FF:10699-109G6: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	acute myeloid leukemia (FAB M7) cell line:M-MOK
Species:	Human (Homo sapiens)
Library ID:	CNhs13049
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	unknown
cell type	megakaryoblast
cell line	M-MOK
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004764

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13049		CAGE		DRX007820		DRR008692

Accession ID Hg19

Library id		BAM		CTSS
CNhs13049		DRZ000117		DRZ001502

Accession ID Hg38

Library id		BAM		CTSS
CNhs13049		DRZ011467		DRZ012852

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0256
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.59
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.109
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00945
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.092
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.797
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.114
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.038
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.58
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.183
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13049

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.61925e-4
MA0003.1	MA0003.1	0.948
MA0004.1	MA0004.1	0.222
MA0006.1	MA0006.1	0.135
MA0007.1	MA0007.1	0.512
MA0009.1	MA0009.1	0.9
MA0014.1	MA0014.1	0.289
MA0017.1	MA0017.1	0.117
MA0018.2	MA0018.2	0.025
MA0019.1	MA0019.1	0.117
MA0024.1	MA0024.1	2.2164e-13
MA0025.1	MA0025.1	0.387
MA0027.1	MA0027.1	0.0104
MA0028.1	MA0028.1	3.70786e-6
MA0029.1	MA0029.1	0.0585
MA0030.1	MA0030.1	0.396
MA0031.1	MA0031.1	0.761
MA0035.2	MA0035.2	7.17388e-12
MA0038.1	MA0038.1	0.0907
MA0039.2	MA0039.2	0.11
MA0040.1	MA0040.1	0.373
MA0041.1	MA0041.1	0.0949
MA0042.1	MA0042.1	0.0606
MA0043.1	MA0043.1	0.129
MA0046.1	MA0046.1	0.816
MA0047.2	MA0047.2	0.205
MA0048.1	MA0048.1	0.334
MA0050.1	MA0050.1	0.00496
MA0051.1	MA0051.1	0.0189
MA0052.1	MA0052.1	0.0665
MA0055.1	MA0055.1	0.0831
MA0057.1	MA0057.1	0.51
MA0058.1	MA0058.1	0.193
MA0059.1	MA0059.1	0.044
MA0060.1	MA0060.1	5.55923e-11
MA0061.1	MA0061.1	0.678
MA0062.2	MA0062.2	6.24957e-12
MA0065.2	MA0065.2	0.0373
MA0066.1	MA0066.1	0.846
MA0067.1	MA0067.1	0.637
MA0068.1	MA0068.1	0.136
MA0069.1	MA0069.1	0.04
MA0070.1	MA0070.1	0.902
MA0071.1	MA0071.1	0.0736
MA0072.1	MA0072.1	0.279
MA0073.1	MA0073.1	0.756
MA0074.1	MA0074.1	0.856
MA0076.1	MA0076.1	1.24528e-6
MA0077.1	MA0077.1	0.904
MA0078.1	MA0078.1	0.562
MA0079.2	MA0079.2	0.482
MA0080.2	MA0080.2	4.64202e-9
MA0081.1	MA0081.1	0.0224
MA0083.1	MA0083.1	7.6801e-5
MA0084.1	MA0084.1	0.713
MA0087.1	MA0087.1	0.137
MA0088.1	MA0088.1	0.00473
MA0090.1	MA0090.1	2.1855e-5
MA0091.1	MA0091.1	0.512
MA0092.1	MA0092.1	0.471
MA0093.1	MA0093.1	0.243
MA0099.2	MA0099.2	6.21296e-9
MA0100.1	MA0100.1	9.16993e-7
MA0101.1	MA0101.1	0.839
MA0102.2	MA0102.2	0.126
MA0103.1	MA0103.1	0.598
MA0104.2	MA0104.2	0.00815
MA0105.1	MA0105.1	0.0379
MA0106.1	MA0106.1	0.315
MA0107.1	MA0107.1	0.318
MA0108.2	MA0108.2	2.99456e-11
MA0111.1	MA0111.1	0.331
MA0112.2	MA0112.2	0.69
MA0113.1	MA0113.1	0.756
MA0114.1	MA0114.1	0.104
MA0115.1	MA0115.1	0.297
MA0116.1	MA0116.1	0.0233
MA0117.1	MA0117.1	0.665
MA0119.1	MA0119.1	0.806
MA0122.1	MA0122.1	0.364
MA0124.1	MA0124.1	0.582
MA0125.1	MA0125.1	0.774
MA0131.1	MA0131.1	0.152
MA0135.1	MA0135.1	0.149
MA0136.1	MA0136.1	2.73039e-12
MA0137.2	MA0137.2	0.848
MA0138.2	MA0138.2	0.288
MA0139.1	MA0139.1	0.293
MA0140.1	MA0140.1	3.09209e-15
MA0141.1	MA0141.1	0.112
MA0142.1	MA0142.1	0.924
MA0143.1	MA0143.1	0.502
MA0144.1	MA0144.1	0.985
MA0145.1	MA0145.1	0.207
MA0146.1	MA0146.1	0.527
MA0147.1	MA0147.1	0.00122
MA0148.1	MA0148.1	0.34
MA0149.1	MA0149.1	0.368
MA0150.1	MA0150.1	0.0209
MA0152.1	MA0152.1	0.399
MA0153.1	MA0153.1	0.176
MA0154.1	MA0154.1	0.273
MA0155.1	MA0155.1	0.663
MA0156.1	MA0156.1	3.01276e-13
MA0157.1	MA0157.1	0.545
MA0159.1	MA0159.1	0.463
MA0160.1	MA0160.1	0.0231
MA0162.1	MA0162.1	0.555
MA0163.1	MA0163.1	2.89768e-5
MA0164.1	MA0164.1	0.215
MA0258.1	MA0258.1	0.974
MA0259.1	MA0259.1	0.00856

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13049

Novel motif	Logo	P-value
1	1	0.146
10	10	0.0705
100	100	0.733
101	101	0.308
102	102	0.143
103	103	0.295
104	104	0.476
105	105	0.781
106	106	0.204
107	107	0.225
108	108	0.458
109	109	0.183
11	11	0.161
110	110	0.322
111	111	0.654
112	112	0.795
113	113	0.197
114	114	0.624
115	115	0.339
116	116	0.511
117	117	0.0355
118	118	0.397
119	119	0.556
12	12	0.966
120	120	0.271
121	121	0.962
122	122	0.59
123	123	0.00283
124	124	0.0461
125	125	0.718
126	126	0.291
127	127	0.491
128	128	0.594
129	129	0.332
13	13	0.00639
130	130	0.0244
131	131	0.991
132	132	0.303
133	133	0.974
134	134	0.434
135	135	0.897
136	136	0.263
137	137	0.364
138	138	0.613
139	139	0.53
14	14	0.86
140	140	0.154
141	141	0.668
142	142	0.707
143	143	0.383
144	144	0.51
145	145	0.763
146	146	0.332
147	147	0.209
148	148	0.897
149	149	0.296
15	15	0.145
150	150	0.84
151	151	0.941
152	152	0.101
153	153	0.48
154	154	0.119
155	155	0.0761
156	156	0.79
157	157	0.578
158	158	0.952
159	159	0.464
16	16	0.279
160	160	0.679
161	161	0.192
162	162	0.765
163	163	0.172
164	164	0.897
165	165	0.572
166	166	0.162
167	167	0.152
168	168	0.179
169	169	0.645
17	17	0.41
18	18	0.431
19	19	0.821
2	2	0.543
20	20	0.436
21	21	0.919
22	22	0.71
23	23	0.0398
24	24	0.139
25	25	0.102
26	26	0.495
27	27	0.949
28	28	0.905
29	29	0.0266
3	3	0.321
30	30	0.182
31	31	0.311
32	32	0.0113
33	33	0.541
34	34	0.952
35	35	0.39
36	36	0.0513
37	37	0.77
38	38	0.459
39	39	0.0891
4	4	0.00295
40	40	0.615
41	41	0.766
42	42	0.164
43	43	0.677
44	44	0.798
45	45	0.769
46	46	0.276
47	47	0.0381
48	48	0.215
49	49	0.27
5	5	0.639
50	50	0.47
51	51	0.722
52	52	0.191
53	53	0.754
54	54	0.677
55	55	0.336
56	56	0.879
57	57	0.0599
58	58	0.136
59	59	0.839
6	6	0.634
60	60	0.88
61	61	0.202
62	62	0.106
63	63	0.424
64	64	0.206
65	65	0.243
66	66	2.30523e-5
67	67	0.225
68	68	0.441
69	69	0.59
7	7	0.0169
70	70	0.184
71	71	0.0476
72	72	0.602
73	73	0.198
74	74	0.911
75	75	0.014
76	76	0.958
77	77	0.333
78	78	0.00245
79	79	0.00279
8	8	0.476
80	80	0.52
81	81	0.785
82	82	0.804
83	83	0.211
84	84	0.75
85	85	0.0793
86	86	0.605
87	87	0.276
88	88	0.257
89	89	0.302
9	9	0.646
90	90	0.224
91	91	0.855
92	92	0.079
93	93	0.959
94	94	0.742
95	95	0.249
96	96	0.609
97	97	0.689
98	98	0.0251
99	99	0.209

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13049

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:9119 acute myeloid leukemia
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
9119 (acute myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007715
+|DRA_sample_Accession=CAGE@SAMD00004764
+|accession_numbers=CAGE;DRX007820;DRR008692;DRZ000117;DRZ001502;DRZ011467;DRZ012852
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:135502501..135502546,+!p1@MYB!2.21!190.52!MYB;;chr21:39870339..39870443,-!p1@ERG!2.15!138.89!ERG;;chr6:135502408..135502459,+!p2@MYB!2.04!123.90!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.93!83.93!PLEK;;chr12:54785074..54785122,-!p2@ZNF385A!1.82!98.92!ZNF385A;;chr10:8096631..8096660,+!p1@GATA3!1.78!70.61!GATA3;;chr2:16080659..16080685,+!p1@MYCN!1.78!58.95!MYCN;;chr7:137620650..137620677,-!p3@CREB3L2!1.70!48.63!CREB3L2;;chr2:5832508..5832524,+!p1@SOX11!1.69!48.30!SOX11;;chr12:53730126..53730146,-!p1@SP7!1.67!45.63!SP7;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!48.63!ZNF385A;;chr6:15401104..15401166,+!p5@JARID2!1.62!40.97!JARID2;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.62!ZBTB16;;chr8:93107451..93107468,-!p2@RUNX1T1!1.59!38.30!RUNX1T1;;chr7:137620684..137620711,-!p4@CREB3L2!1.54!33.31!CREB3L2;;chr5:88178983..88179012,-!p1@MEF2C!1.50!227.82!MEF2C;;chr3:128206762..128206781,-!p2@GATA2!1.50!181.52!GATA2;;chr8:60031619..60031676,-!p1@TOX!1.50!64.95!TOX;;chr3:18486354..18486377,-!p2@SATB1!1.50!38.30!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.50!30.98!PLEK;;chr21:36421347..36421380,-!p8@RUNX1!1.49!29.64!RUNX1;;chr10:94449703..94449718,+!p1@HHEX!1.47!106.92!HHEX;;chr4:57522598..57522664,-!p3@HOPX!1.47!28.64!HOPX;;chr12:54694758..54694805,-!p1@NFE2!1.45!32.64!NFE2;;chr17:48072574..48072597,-!p1@DLX3!1.43!25.98!DLX3;;chr1:92951607..92951661,-!p1@GFI1!1.41!24.98!GFI1;;chr21:36421535..36421610,-!p2@RUNX1!1.40!84.27!RUNX1;;chr20:50159198..50159299,-!p1@NFATC2!1.40!34.97!NFATC2;;chr10:94449675..94449694,+!p2@HHEX!1.39!62.28!HHEX;;chr12:66218836..66218888,+!p1@HMGA2!1.38!207.17!HMGA2;;chr13:72441315..72441454,-!p1@DACH1!1.37!44.63!DACH1;;chr4:57522674..57522699,-!p5@HOPX!1.36!21.65!HOPX;;chr5:134369905..134369972,-!p1@PITX1!1.35!32.31!PITX1;;chr6:135502472..135502489,+!p3@MYB!1.35!21.32!MYB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.32!ZBED1;;chrX:131624056..131624069,-!p2@MBNL3!1.30!25.65!MBNL3;;chr1:202777535..202777556,-!p1@KDM5B!1.29!597.20!KDM5B;;chr9:135853402..135853417,+!p4@GFI1B!1.29!18.65!GFI1B;;chr12:53730147..53730177,-!p2@SP7!1.28!17.99!SP7;;chrX:131623932..131623964,-!p7@MBNL3!1.27!24.98!MBNL3;;chr13:79177703..79177729,-!p2@POU4F1!1.27!17.65!POU4F1;;chr9:135854091..135854159,+!p1@GFI1B!1.26!17.32!GFI1B;;chr1:25291475..25291511,-!p2@RUNX3!1.26!17.32!RUNX3;;chr14:75988771..75988826,+!p1@BATF!1.22!20.65!BATF;;chr20:42295745..42295765,+!p1@MYBL2!1.21!241.81!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!1.21!61.62!E2F3;;chr21:36421518..36421532,-!p11@RUNX1!1.20!14.99!RUNX1;;chr3:63953435..63953499,+!p1@ATXN7!1.18!13.99!ATXN7;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.32!GATA3;;chr9:130954041..130954121,-!p2@CIZ1!1.16!57.29!CIZ1;;chr21:36260980..36261011,-!p1@RUNX1!1.15!370.71!RUNX1;;chr12:66218255..66218304,+!p3@HMGA2!1.15!34.97!HMGA2;;chr11:113930401..113930422,+!p3@ZBTB16!1.14!12.66!ZBTB16;;chr1:47697881..47697910,-!p4@TAL1!1.14!12.66!TAL1;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.65!ZBTB16;;chr12:66218183..66218209,+!p4@HMGA2!1.12!23.65!HMGA2;;chrX:84499081..84499115,+!p2@ZNF711!1.12!17.99!ZNF711;;chr13:79177674..79177701,-!p1@POU4F1!1.11!11.99!POU4F1;;chr14:65569101..65569119,-!p3@MAX!1.10!36.97!MAX;;chr2:16082155..16082169,+!p3@MYCN!1.10!11.66!MYCN;;chr5:88179017..88179046,-!p2@MEF2C!1.09!45.63!MEF2C;;chr2:172949484..172949522,+!p1@DLX1!1.09!11.32!DLX1;;chr11:128563948..128564003,+!p1@FLI1!1.08!133.56!FLI1;;chr7:149470641..149470694,-!p1@ZNF467!1.07!49.63!ZNF467;;chr20:31350184..31350200,+!p1@DNMT3B!1.05!21.32!DNMT3B;;chr2:5832493..5832507,+!p2@SOX11!1.05!10.33!SOX11;;chrX:147582130..147582147,+!p3@AFF2!1.05!10.33!AFF2;;chr3:18466787..18466839,-!p1@SATB1!1.04!44.96!SATB1;;chrX:84498989..84499003,+!p1@ZNF711!1.04!13.66!ZNF711;;chr11:32457103..32457123,-!p3@WT1!1.04!9.99!WT1;;chr20:42295713..42295738,+!p2@MYBL2!1.03!58.29!MYBL2;;chr16:88519669..88519726,+!p1@ZFPM1!1.02!86.93!ZFPM1;;chrX:129244885..129244926,-!p3@ELF4!1.02!23.65!ELF4;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.66!HMGA2;;chr19:13213511..13213545,-!p2@LYL1!1.02!10.33!LYL1;;chr8:128748308..128748324,+!p2@MYC!1.01!258.13!MYC;;chr3:141747459..141747475,-!p1@TFDP2!1.01!78.27!TFDP2;;chr12:66218212..66218244,+!p5@HMGA2!1.01!13.66!HMGA2;;chr11:32457075..32457095,-!p1@WT1!1.01!9.33!WT1;;chrX:129244840..129244881,-!p2@ELF4!1.00!35.31!ELF4;;chr12:11802547..11802560,+!p5@ETV6!0.99!12.32!ETV6;;chrX:131623982..131624011,-!p6@MBNL3!0.98!12.66!MBNL3;;chrX:131624020..131624048,-!p9@MBNL3!0.98!10.33!MBNL3;;chr10:8095593..8095625,+!p3@GATA3!0.98!9.99!GATA3;;chr13:41593425..41593480,-!p1@ELF1!0.97!53.96!ELF1;;chrX:131623044..131623089,-!p1@MBNL3!0.97!35.64!MBNL3;;chr3:178789993..178790049,-!p5@ZMAT3!0.96!11.99!ZMAT3;;chr3:24536253..24536328,-!p1@THRB!0.95!15.32!THRB;;chr1:247171316..247171336,-!p3@ZNF695!0.95!11.99!ZNF695;;chr19:48774586..48774670,+!p1@ZNF114!0.95!9.99!ZNF114;;chr3:37217736..37217753,-!p2@LRRFIP2!0.94!33.64!LRRFIP2;;chr12:54778471..54778528,-!p1@ZNF385A!0.94!7.66!ZNF385A;;chr17:45810594..45810608,+!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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10699-109G6
 |is_a=DOID:9119;;EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
-|library_ids=CNhs13049
+|library_id=CNhs13049
+|library_id_phase_based=2:CNhs13049
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10699
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10699
 |name=acute myeloid leukemia (FAB M7) cell line:M-MOK
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13049,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007715
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 }}

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FF:10699-109G6: Difference between revisions

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Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0