FF:10729-110A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004859 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007968;DRR008840;DRZ000265;DRZ001650;DRZ011615;DRZ013000 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0002573,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:1192,DOID:3193,DOID:962 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103225,FF:0103046 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0103225 | |fonse_cell_line=FF:0103225 | ||
|fonse_cell_line_closure=FF:0103225 | |fonse_cell_line_closure=FF:0103225 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neurofibroma%2520cell%2520line%253aHs%252053%252eT.CNhs11854.10729-110A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neurofibroma%2520cell%2520line%253aHs%252053%252eT.CNhs11854.10729-110A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neurofibroma%2520cell%2520line%253aHs%252053%252eT.CNhs11854.10729-110A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neurofibroma%2520cell%2520line%253aHs%252053%252eT.CNhs11854.10729-110A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neurofibroma%2520cell%2520line%253aHs%252053%252eT.CNhs11854.10729-110A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10729-110A9 | |id=FF:10729-110A9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103046 | ||
|is_obsolete= | |||
|library_id=CNhs11854 | |||
|library_id_phase_based=2:CNhs11854 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10729 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10729 | |||
|name=neurofibroma cell line:Hs 53.T | |name=neurofibroma cell line:Hs 53.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11854,LSID830,release010,COMPLETED | |profile_hcage=CNhs11854,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.252985381594938,0,-0.0106928013577643,0.177504063017191,0,0,0,0,0,0,0,0,0,0,0,0.11991684384043,0,0.310275290304099,0,0,0,0,0,0.25845375728067,0,0,0.157970870512483,0,0,0,0,0,0,0,0,0,0,0.11991684384043,0,0.316223411976091,0,0.213785609188296,0,0,0,0,0,0,0.0357434008073804,0,0,0,0.213785609188296,0,0.046442438325716,0,-0.0969923612426051,0,0,0.0225732166273326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0203653550321071,0.153337930754042,0,0,0,-0.050440545943114,0.142169355538052,0,0.463598300652527,0,0,-0.0980353512377064,0.128132926959982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0105192106716873,0,0,0,0.0475718064049209,0.114380931364858,0,0,0.0976802519499783,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.11991684384043,0,0,0,0,0,0.463598300652527,0,0,0.0437485850057804,0,-0.183158758460664,0.212896511025255,0,0,-0.0139756752282465,0,0,0,0,0.11991684384043,0,0,0,0,0.421378111399005,0,0.305999101959412,0,0.11991684384043,0,0,0.100939508080722,0.107831180782917,0,-0.114299639229295,-0.0683442610773682,0,0,0,0,-0.032076420639746,0,-0.120879483793741,-0.0827201683234173,0,0.00194025696131845,-0.04680465889238,0,0,0,0.236556947439934,0.27745762257863,0,0,0.396097764137841,0.0253020872800029,0,0,1.10765759352263,0,0.159104533918778,0.193213485284551,0,0,0,0,0,0,0,0,0,0.11991684384043,0,0,0,0.23591486949227,0.0294230568697582,0,0,0,0,-0.0221139460133528,0,7.4865552995629e-05,0.176211822395002,0,-0.0263140830399793,0.0986508081796528,0,-0.182472883169484,0.0584001150925971,-0.287036209792297,-0.050440545943114,0.143525610920206,0.223321692131477,0,0.153337930754042,-0.236774650762442,0.0747814804110031,0.0104330638388905,-0.0103067067724928,-0.0201755663089409,-0.0371619079301768,0,0,0,0.170972897783147,0,0,0.192576471716178,0.00973473557316205,0.172779953965454,-0.0459217638021902,0.00180194086264007,-0.181787969925178,-0.0395325284566706,-0.101024799347868,0.0798090697732679,0.498839323178944,0.12671066484749,0.549497978351569,0.0182926233180061,0.0024360097443118,-0.103220920914371,0.120734525847319,0.116645499111261,0.226483186884931,0.145441348110928,0,0.118144633028105,0.153961709609912,0,0.0684826503746027,0.444068757955041,0,0,0,0,0,-0.0713521950749261,-0.539492143030166,0.123556091993182,0,-0.0666892458706255,0.122317334955129,-0.00387774403888052,0,-0.161253487205174,0,0,0.0296442191509541,0,-0.006073685908648,0.505995459871995,0.080454304987706,0.164421867235675,-0.0584468268118252,0.0971608290178547,0.139320466913401,0.0216354616677288,0.259351938345974,0.0571970912650395,0.325176579206036,0,0.636525113554914,-0.0264740598011625,0.0825671341362157,0.202889755274743,0.11991684384043,0.123820418447479,0,0.078237488217102,0,-0.143405431640872,0.220746973608195,-0.439289374580686,-0.14740710674314,0,0.122401647606837,0.942560289638509,0,-0.108196775910242,0,0,-0.0304502394942097,0.0634847585688526,0.112019129055447,0.113367078060626,0,0.357230598105366,0,0,0.200675096206104,-0.115559193923959,0,0.0707750603333071,-0.252791260664669,0.202375907293561,-0.115971073434934,0,0,-0.431914728804428,0,0.290927460291345,-0.192624652136706,0.0752370950605261,0.207849438834952,-0.133409497646326,0,0.0980288963864065,0,0,-0.177527765965176,0,0.394097328722058,0,0,-0.104417566453151,0,0,0,0,0.15684974542857,0.0348444883699476,0,0,0,0.106892804594148,0,0,0.372845774414571,-0.0639058699251032,0,0.0744614903713436,0,0,0,0,0,0,0,0.290927460291345,0.89424440101151,0.00370446636299062,0.0907681935118761,0,0,0,0,0.140688250995252,0.153175091454003,0.11991684384043,-0.0119458626572021,0,0,0,0,-0.0861409897892114,0,0,0.059958421920215,0.059958421920215,-0.057730457053664,-0.12177977744026,0,0,0,0.136349010079534,0,0,0,0,0.00986063803783854,0,0,0,0,0.043789714549789,-0.0815818795468414,0,-0.0420447278607593,0.361517285288903,0.326813176594414,0,0,-0.0475615226015911,0,0.11991684384043,0.175288620344916,0,0.11991684384043,0,0,0,0,0,0,0,-0.000528903211459208,0,0,0,0,0,0,0,0,0,0,0,-0.0191412245016753,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.0358129863042544,0,0,0,0,0,0,0,0,-0.180498479371897,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.355008126034383,0,0,0.309454540433898,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.0106928013577643,0,0.11991684384043,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.0060324701314524,0,0,0,0.10898922439914,0,0.252985381594938,0,0,0,0.059958421920215,0,0.0239574364668427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781275975753028,0.0759322403650773,0.26229046237866,0.00602089091849212,0,0,0.170667621611386,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00140950556470003,0,0,0,0,0.11991684384043,0,0,0.25845375728067,0,0,-0.0920328098005262,0,0,0,0,0.178575324415009,0,0.0653899175772114,0.576730302629011,0.046442438325716,0,0,0,0.256204828518627,0.213785609188296,0,0.0548430212818148,0,0.0531394564215283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310275290304099,0,0,0,0,0,0,0,0,0,0,0,0,0.106892804594148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0259470586447985,0.11991684384043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0398983755717912,0,0,0,0.20021718202428,0,0,0,0,0,0,0,0,0.213785609188296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0490172134016675,0,0,0,0,0,0,0,0,0.11991684384043,0,0,0,0,-0.0482220752390542,0,0.129408976958269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0363126301116996,0,0,0,0,0.166148498527378,0,0,0,0,0,0,0.356411653548727,-0.0292398231108554,0,0,0.413303411681324,0,0,0,0,0,0,0,0,0,0,0.255057854637648,0,0,0.528023218876956,0,0,0.0641196650152675,0,0,0,0,0,0,0,0,0,0.15246543003817,0,0,0,0,0,0,0,0,0,0,0.0714868016147609,0,0,0,0,0,0,0,0,1.18498074428227,0,0,0,0,0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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=34.639 | |rna_weight_ug=34.639 | ||
|sample_age=13 | |sample_age=13 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7033 | |sample_cell_catalog=CRL-7033 | ||
|sample_cell_line=Hs 53.T | |sample_cell_line=Hs 53.T | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=B | |sample_ethnicity=B | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.82517515958873e-219!GO:0005737;cytoplasm;1.2655320816072e-188!GO:0043226;organelle;8.79882364711902e-172!GO:0043229;intracellular organelle;1.78057184809719e-171!GO:0043231;intracellular membrane-bound organelle;2.35176505583228e-163!GO:0043227;membrane-bound organelle;4.79490473693342e-163!GO:0044444;cytoplasmic part;2.82562543477404e-130!GO:0044422;organelle part;5.41016227262403e-123!GO:0044446;intracellular organelle part;1.06396229826397e-121!GO:0032991;macromolecular complex;4.47509131485128e-87!GO:0005515;protein binding;8.58756419623899e-83!GO:0044238;primary metabolic process;1.02437719633053e-79!GO:0044237;cellular metabolic process;1.62443485141977e-78!GO:0043170;macromolecule metabolic process;2.25755010404904e-75!GO:0030529;ribonucleoprotein complex;1.17084926023916e-73!GO:0043233;organelle lumen;1.13515487350626e-62!GO:0031974;membrane-enclosed lumen;1.13515487350626e-62!GO:0005739;mitochondrion;6.75405531765345e-59!GO:0005634;nucleus;6.8693864869567e-58!GO:0044428;nuclear part;1.61580846179416e-56!GO:0003723;RNA binding;6.53683747352756e-56!GO:0019538;protein metabolic process;1.42686730891904e-53!GO:0044260;cellular macromolecule metabolic process;1.41779428806093e-48!GO:0016043;cellular component organization and biogenesis;1.16147601768283e-47!GO:0044267;cellular protein metabolic process;1.85341872931013e-47!GO:0005840;ribosome;7.95383807536354e-47!GO:0031090;organelle membrane;1.84606989365992e-46!GO:0006412;translation;3.3323109475149e-45!GO:0043234;protein complex;1.93982022218108e-44!GO:0003735;structural constituent of ribosome;8.60136881149761e-42!GO:0015031;protein transport;2.24267699757628e-40!GO:0033036;macromolecule localization;4.2379907939427e-39!GO:0043283;biopolymer metabolic process;4.54665895933469e-39!GO:0044429;mitochondrial part;5.97683639919029e-39!GO:0009058;biosynthetic process;1.03853543990619e-37!GO:0045184;establishment of protein localization;4.35554474126224e-37!GO:0006396;RNA processing;5.13857637495454e-37!GO:0031981;nuclear lumen;8.32680895313676e-37!GO:0009059;macromolecule biosynthetic process;1.06004558763686e-36!GO:0005829;cytosol;1.07699585194847e-36!GO:0008104;protein localization;2.09175101865382e-36!GO:0033279;ribosomal subunit;2.09175101865382e-36!GO:0044249;cellular biosynthetic process;4.03100085579004e-35!GO:0046907;intracellular transport;1.25013004143271e-34!GO:0031967;organelle envelope;2.79196624249357e-34!GO:0031975;envelope;4.31952374056664e-34!GO:0010467;gene expression;8.56788887002961e-33!GO:0043228;non-membrane-bound organelle;6.39784004336234e-31!GO:0043232;intracellular non-membrane-bound organelle;6.39784004336234e-31!GO:0016071;mRNA metabolic process;1.95170347570853e-30!GO:0006996;organelle organization and biogenesis;2.48767816548499e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.86866292019618e-28!GO:0006886;intracellular protein transport;1.1620397961082e-27!GO:0008380;RNA splicing;2.70963339151756e-27!GO:0065003;macromolecular complex assembly;3.44978184553551e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.07409434244363e-26!GO:0006397;mRNA processing;1.003783130814e-25!GO:0005740;mitochondrial envelope;1.71255711556804e-25!GO:0022607;cellular component assembly;4.89207851449016e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.35516372149057e-24!GO:0031966;mitochondrial membrane;4.59224149543485e-24!GO:0019866;organelle inner membrane;9.11315038925719e-24!GO:0005654;nucleoplasm;4.69301258758296e-23!GO:0005743;mitochondrial inner membrane;3.95513626106214e-22!GO:0044445;cytosolic part;2.83641114331617e-21!GO:0051649;establishment of cellular localization;3.21722168493958e-21!GO:0051641;cellular localization;3.4493525465011e-21!GO:0006119;oxidative phosphorylation;2.57913378516055e-20!GO:0000166;nucleotide binding;5.34926129037637e-20!GO:0005783;endoplasmic reticulum;6.09841089282267e-20!GO:0044455;mitochondrial membrane part;8.19035844883038e-20!GO:0005681;spliceosome;8.47834436806962e-20!GO:0006457;protein folding;9.79283340864696e-20!GO:0012505;endomembrane system;1.09255484882816e-19!GO:0015934;large ribosomal subunit;1.4079827746313e-19!GO:0044451;nucleoplasm part;1.43643986903175e-18!GO:0006259;DNA metabolic process;2.04965256039505e-18!GO:0008134;transcription factor binding;3.29640339371808e-18!GO:0005794;Golgi apparatus;7.64055395026127e-18!GO:0015935;small ribosomal subunit;7.80563681584327e-18!GO:0048770;pigment granule;1.51937002980361e-17!GO:0042470;melanosome;1.51937002980361e-17!GO:0016462;pyrophosphatase activity;4.09960649223617e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.59335042266722e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.37173436783679e-17!GO:0017111;nucleoside-triphosphatase activity;9.61288988171648e-17!GO:0016874;ligase activity;2.5455172083872e-16!GO:0048193;Golgi vesicle transport;2.91848282404821e-16!GO:0005746;mitochondrial respiratory chain;3.14512386531341e-16!GO:0007049;cell cycle;3.78079347606198e-16!GO:0006512;ubiquitin cycle;4.63159811539994e-16!GO:0031980;mitochondrial lumen;5.23948470084057e-16!GO:0005759;mitochondrial matrix;5.23948470084057e-16!GO:0022618;protein-RNA complex assembly;7.95863777301571e-16!GO:0043412;biopolymer modification;1.05931198315357e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.09342534211824e-15!GO:0044432;endoplasmic reticulum part;1.97158677535103e-15!GO:0019941;modification-dependent protein catabolic process;2.28978741822341e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.28978741822341e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.36485678360089e-15!GO:0044257;cellular protein catabolic process;2.88360394727181e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.11108569520276e-15!GO:0044265;cellular macromolecule catabolic process;5.76855316968488e-15!GO:0043285;biopolymer catabolic process;8.22273905559789e-15!GO:0032553;ribonucleotide binding;1.06008891367436e-14!GO:0032555;purine ribonucleotide binding;1.06008891367436e-14!GO:0006605;protein targeting;1.58960781425357e-14!GO:0005730;nucleolus;1.59601250353666e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.66931406676509e-14!GO:0003954;NADH dehydrogenase activity;1.66931406676509e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.66931406676509e-14!GO:0003676;nucleic acid binding;1.78190646550491e-14!GO:0006464;protein modification process;2.62967385918181e-14!GO:0017076;purine nucleotide binding;3.30725256581583e-14!GO:0051082;unfolded protein binding;4.35520622905795e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.63122253376057e-14!GO:0000502;proteasome complex (sensu Eukaryota);7.27735927454508e-14!GO:0008135;translation factor activity, nucleic acid binding;9.03954722260311e-14!GO:0005761;mitochondrial ribosome;1.30504593708876e-13!GO:0000313;organellar ribosome;1.30504593708876e-13!GO:0030163;protein catabolic process;1.51830255945609e-13!GO:0009057;macromolecule catabolic process;2.06963114476319e-13!GO:0016192;vesicle-mediated transport;2.90547804765661e-13!GO:0051186;cofactor metabolic process;4.69128699763977e-13!GO:0016070;RNA metabolic process;6.75243560718405e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.99940673797213e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.52946171792006e-12!GO:0045271;respiratory chain complex I;1.52946171792006e-12!GO:0005747;mitochondrial respiratory chain complex I;1.52946171792006e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.73972135585517e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.73972135585517e-12!GO:0042773;ATP synthesis coupled electron transport;1.73972135585517e-12!GO:0022402;cell cycle process;2.54945080122489e-12!GO:0005524;ATP binding;2.95903389287156e-12!GO:0043687;post-translational protein modification;3.29718034995273e-12!GO:0032559;adenyl ribonucleotide binding;3.85565817935814e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.70259315678404e-12!GO:0003712;transcription cofactor activity;7.37901022623137e-12!GO:0044248;cellular catabolic process;8.90567849585653e-12!GO:0005793;ER-Golgi intermediate compartment;1.26212694464659e-11!GO:0030554;adenyl nucleotide binding;1.71191809668179e-11!GO:0000278;mitotic cell cycle;1.78351921462942e-11!GO:0048523;negative regulation of cellular process;5.59832919009639e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.20720007175924e-11!GO:0000375;RNA splicing, via transesterification reactions;7.20720007175924e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.20720007175924e-11!GO:0003743;translation initiation factor activity;1.39490659791233e-10!GO:0012501;programmed cell death;1.42247636569048e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.68178938542348e-10!GO:0008639;small protein conjugating enzyme activity;1.92536886571578e-10!GO:0006366;transcription from RNA polymerase II promoter;2.31062583422898e-10!GO:0009055;electron carrier activity;2.31204460957694e-10!GO:0006915;apoptosis;2.59677887384271e-10!GO:0004842;ubiquitin-protein ligase activity;3.16638648906655e-10!GO:0019787;small conjugating protein ligase activity;3.47514846103436e-10!GO:0005789;endoplasmic reticulum membrane;5.59920376957893e-10!GO:0006413;translational initiation;6.05810526074098e-10!GO:0006732;coenzyme metabolic process;6.52302677699601e-10!GO:0006913;nucleocytoplasmic transport;1.02113069876889e-09!GO:0031965;nuclear membrane;1.20431510741625e-09!GO:0005635;nuclear envelope;1.38215534624665e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.47420938970429e-09!GO:0042254;ribosome biogenesis and assembly;1.93867512485733e-09!GO:0008219;cell death;2.01456702585233e-09!GO:0016265;death;2.01456702585233e-09!GO:0051169;nuclear transport;2.03881653391879e-09!GO:0006974;response to DNA damage stimulus;2.19620090919842e-09!GO:0006446;regulation of translational initiation;2.85771705987494e-09!GO:0016604;nuclear body;3.68335098528262e-09!GO:0048519;negative regulation of biological process;5.05922176091848e-09!GO:0016887;ATPase activity;5.12585507904024e-09!GO:0009259;ribonucleotide metabolic process;5.2014922642435e-09!GO:0030120;vesicle coat;5.95792238096119e-09!GO:0030662;coated vesicle membrane;5.95792238096119e-09!GO:0008565;protein transporter activity;6.19252806476288e-09!GO:0044453;nuclear membrane part;6.19252806476288e-09!GO:0016881;acid-amino acid ligase activity;9.85731224573679e-09!GO:0042623;ATPase activity, coupled;9.93911851093254e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.6781183449297e-08!GO:0044431;Golgi apparatus part;1.7520386019682e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.7609312785287e-08!GO:0017038;protein import;2.12897632858285e-08!GO:0003714;transcription corepressor activity;2.27124777201092e-08!GO:0006461;protein complex assembly;2.30495522929609e-08!GO:0006163;purine nucleotide metabolic process;2.49823761888522e-08!GO:0005788;endoplasmic reticulum lumen;2.54796225640439e-08!GO:0009150;purine ribonucleotide metabolic process;3.39301081311568e-08!GO:0016564;transcription repressor activity;4.21318832207928e-08!GO:0051276;chromosome organization and biogenesis;5.04447121689988e-08!GO:0051726;regulation of cell cycle;5.07473875761549e-08!GO:0009260;ribonucleotide biosynthetic process;5.14508779316195e-08!GO:0006399;tRNA metabolic process;5.46188021069305e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.74787167483425e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;6.86898957086438e-08!GO:0006793;phosphorus metabolic process;7.38658116180729e-08!GO:0006796;phosphate metabolic process;7.38658116180729e-08!GO:0000074;regulation of progression through cell cycle;7.86393549375125e-08!GO:0006164;purine nucleotide biosynthetic process;8.13989299343685e-08!GO:0051246;regulation of protein metabolic process;8.92324420352102e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.06156016151318e-07!GO:0022403;cell cycle phase;1.22860591850721e-07!GO:0009060;aerobic respiration;1.30025383171653e-07!GO:0050794;regulation of cellular process;1.32215821133965e-07!GO:0005768;endosome;1.39231974176116e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.75481956155605e-07!GO:0006323;DNA packaging;2.03473287985387e-07!GO:0048475;coated membrane;2.1964486009661e-07!GO:0030117;membrane coat;2.1964486009661e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.40498412684843e-07!GO:0009719;response to endogenous stimulus;2.41507746885488e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.61123851314272e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.61123851314272e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.61123851314272e-07!GO:0009141;nucleoside triphosphate metabolic process;2.6901039428469e-07!GO:0015986;ATP synthesis coupled proton transport;2.93896040839002e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.93896040839002e-07!GO:0000087;M phase of mitotic cell cycle;2.93896040839002e-07!GO:0007067;mitosis;3.27759391553655e-07!GO:0006281;DNA repair;3.27759391553655e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.41016150130529e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.41016150130529e-07!GO:0065002;intracellular protein transport across a membrane;3.50479556846218e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.12775651946448e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.18219687972617e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.18219687972617e-07!GO:0031324;negative regulation of cellular metabolic process;4.5293473090505e-07!GO:0004386;helicase activity;4.57785769881367e-07!GO:0005643;nuclear pore;4.67613441405638e-07!GO:0043038;amino acid activation;4.89129467089143e-07!GO:0006418;tRNA aminoacylation for protein translation;4.89129467089143e-07!GO:0043039;tRNA aminoacylation;4.89129467089143e-07!GO:0016607;nuclear speck;5.43332814136672e-07!GO:0019829;cation-transporting ATPase activity;5.6540197036052e-07!GO:0045333;cellular respiration;6.67582138902242e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.39225867153562e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.39225867153562e-07!GO:0009056;catabolic process;8.552231724971e-07!GO:0003924;GTPase activity;9.1383838265444e-07!GO:0000151;ubiquitin ligase complex;1.0450907352124e-06!GO:0007010;cytoskeleton organization and biogenesis;1.16713521581263e-06!GO:0005694;chromosome;1.16722123193799e-06!GO:0005798;Golgi-associated vesicle;1.24977317916724e-06!GO:0005667;transcription factor complex;1.34807873199481e-06!GO:0016310;phosphorylation;1.41709886875533e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.5453224849211e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.58770924874081e-06!GO:0016740;transferase activity;1.64910997049999e-06!GO:0051301;cell division;1.78463160914189e-06!GO:0046034;ATP metabolic process;1.83315735083536e-06!GO:0032446;protein modification by small protein conjugation;1.91975084148363e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.96447041004077e-06!GO:0030029;actin filament-based process;1.97685387553882e-06!GO:0043069;negative regulation of programmed cell death;2.0328738767026e-06!GO:0015630;microtubule cytoskeleton;2.18716634121122e-06!GO:0043067;regulation of programmed cell death;2.2597612002634e-06!GO:0031988;membrane-bound vesicle;2.26844852109271e-06!GO:0008026;ATP-dependent helicase activity;2.39146032977863e-06!GO:0016567;protein ubiquitination;2.39146032977863e-06!GO:0042981;regulation of apoptosis;2.4794187392982e-06!GO:0007005;mitochondrion organization and biogenesis;2.4794187392982e-06!GO:0000139;Golgi membrane;3.02981290563446e-06!GO:0008092;cytoskeletal protein binding;3.3285120452851e-06!GO:0043066;negative regulation of apoptosis;3.47984682332614e-06!GO:0051188;cofactor biosynthetic process;3.5209036145957e-06!GO:0051187;cofactor catabolic process;3.5209036145957e-06!GO:0006260;DNA replication;3.59905607787522e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.64659809247825e-06!GO:0046930;pore complex;3.77099885307783e-06!GO:0006754;ATP biosynthetic process;3.83345596242495e-06!GO:0006753;nucleoside phosphate metabolic process;3.83345596242495e-06!GO:0065004;protein-DNA complex assembly;3.84078779377303e-06!GO:0006099;tricarboxylic acid cycle;4.19617027274648e-06!GO:0046356;acetyl-CoA catabolic process;4.19617027274648e-06!GO:0008361;regulation of cell size;4.3515425227092e-06!GO:0031252;leading edge;4.72779397845062e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.63010715737507e-06!GO:0009109;coenzyme catabolic process;5.7966031922052e-06!GO:0051789;response to protein stimulus;6.16385323941926e-06!GO:0006986;response to unfolded protein;6.16385323941926e-06!GO:0016049;cell growth;6.21341492117046e-06!GO:0009892;negative regulation of metabolic process;6.68095143270558e-06!GO:0051170;nuclear import;6.97492411726709e-06!GO:0006916;anti-apoptosis;7.28886366341583e-06!GO:0006403;RNA localization;7.76843394852036e-06!GO:0050657;nucleic acid transport;7.91303202233559e-06!GO:0051236;establishment of RNA localization;7.91303202233559e-06!GO:0050658;RNA transport;7.91303202233559e-06!GO:0006364;rRNA processing;8.09967769822656e-06!GO:0006606;protein import into nucleus;8.97998081576162e-06!GO:0045259;proton-transporting ATP synthase complex;1.0442976134487e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.10692579266926e-05!GO:0043566;structure-specific DNA binding;1.16064845640583e-05!GO:0006084;acetyl-CoA metabolic process;1.16587879883621e-05!GO:0016491;oxidoreductase activity;1.21529281517198e-05!GO:0043623;cellular protein complex assembly;1.26325372931443e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.26383910300653e-05!GO:0050789;regulation of biological process;1.35051030072777e-05!GO:0044427;chromosomal part;1.35051030072777e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35913708132239e-05!GO:0016072;rRNA metabolic process;1.3856562482101e-05!GO:0016787;hydrolase activity;1.44213568706e-05!GO:0000245;spliceosome assembly;1.44213568706e-05!GO:0016853;isomerase activity;1.56944693764527e-05!GO:0045786;negative regulation of progression through cell cycle;1.65214054888004e-05!GO:0016481;negative regulation of transcription;1.67289335503609e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.67453701186902e-05!GO:0031982;vesicle;1.7958068775288e-05!GO:0006613;cotranslational protein targeting to membrane;1.81854403660607e-05!GO:0009117;nucleotide metabolic process;1.92254719218337e-05!GO:0031410;cytoplasmic vesicle;1.92463126590913e-05!GO:0006333;chromatin assembly or disassembly;2.0183597753932e-05!GO:0005813;centrosome;2.17166993075022e-05!GO:0005762;mitochondrial large ribosomal subunit;2.23370825212858e-05!GO:0000315;organellar large ribosomal subunit;2.23370825212858e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.3516558677638e-05!GO:0003697;single-stranded DNA binding;2.64400216028009e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.15261556157253e-05!GO:0000785;chromatin;3.23575027538927e-05!GO:0001558;regulation of cell growth;3.44936023929119e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.57864328294373e-05!GO:0005815;microtubule organizing center;3.68480074276875e-05!GO:0016568;chromatin modification;3.76638358158167e-05!GO:0006752;group transfer coenzyme metabolic process;4.13828614079096e-05!GO:0008654;phospholipid biosynthetic process;4.92682559317736e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.71658609428477e-05!GO:0004298;threonine endopeptidase activity;5.73841935155485e-05!GO:0000279;M phase;5.78151082409061e-05!GO:0030867;rough endoplasmic reticulum membrane;5.85470689209404e-05!GO:0005905;coated pit;5.93683201504549e-05!GO:0045454;cell redox homeostasis;6.39453604430669e-05!GO:0005770;late endosome;6.75199215749849e-05!GO:0016563;transcription activator activity;7.97781382198655e-05!GO:0030133;transport vesicle;8.42052148213057e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.66392391085701e-05!GO:0044440;endosomal part;9.98631357717067e-05!GO:0010008;endosome membrane;9.98631357717067e-05!GO:0051329;interphase of mitotic cell cycle;0.000100752429043825!GO:0005773;vacuole;0.000101734674051658!GO:0005525;GTP binding;0.000101734674051658!GO:0005769;early endosome;0.000104303920239225!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000105769444468944!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000112564446307614!GO:0051325;interphase;0.00011413257765604!GO:0003713;transcription coactivator activity;0.000115335256065458!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000117964962757063!GO:0009108;coenzyme biosynthetic process;0.000118356433539016!GO:0051028;mRNA transport;0.000135161564764533!GO:0016859;cis-trans isomerase activity;0.000148809897435671!GO:0030663;COPI coated vesicle membrane;0.000156077525820504!GO:0030126;COPI vesicle coat;0.000156077525820504!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000185902025245234!GO:0005048;signal sequence binding;0.000220082761411964!GO:0019899;enzyme binding;0.000228252780902891!GO:0043021;ribonucleoprotein binding;0.000228915445659677!GO:0000314;organellar small ribosomal subunit;0.000228915445659677!GO:0005763;mitochondrial small ribosomal subunit;0.000228915445659677!GO:0005885;Arp2/3 protein complex;0.000337283080802649!GO:0051427;hormone receptor binding;0.000344671301735167!GO:0006334;nucleosome assembly;0.000346508914907162!GO:0019867;outer membrane;0.000348991419825188!GO:0030137;COPI-coated vesicle;0.00035435437881058!GO:0008250;oligosaccharyl transferase complex;0.000360195927243009!GO:0032561;guanyl ribonucleotide binding;0.000368708443655601!GO:0019001;guanyl nucleotide binding;0.000368708443655601!GO:0003724;RNA helicase activity;0.000371885874370451!GO:0031968;organelle outer membrane;0.00037789541304785!GO:0004576;oligosaccharyl transferase activity;0.000382402302775349!GO:0033116;ER-Golgi intermediate compartment membrane;0.000404567534011953!GO:0016779;nucleotidyltransferase activity;0.000408241255979393!GO:0048522;positive regulation of cellular process;0.000434660875026864!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000490975527156754!GO:0000323;lytic vacuole;0.000493971162544018!GO:0005764;lysosome;0.000493971162544018!GO:0006091;generation of precursor metabolites and energy;0.000535034214399188!GO:0005819;spindle;0.000543274537604927!GO:0035257;nuclear hormone receptor binding;0.000624825017413913!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000635756199966566!GO:0031497;chromatin assembly;0.000659153943883156!GO:0005791;rough endoplasmic reticulum;0.000687514915068125!GO:0044262;cellular carbohydrate metabolic process;0.00070292037731495!GO:0006891;intra-Golgi vesicle-mediated transport;0.000736122245665513!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00073815366341528!GO:0015399;primary active transmembrane transporter activity;0.00073815366341528!GO:0048471;perinuclear region of cytoplasm;0.000885118029232523!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000904689819036063!GO:0030658;transport vesicle membrane;0.00094870212238767!GO:0005741;mitochondrial outer membrane;0.000966755864776361!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000967489599275479!GO:0030132;clathrin coat of coated pit;0.00104301394650934!GO:0051920;peroxiredoxin activity;0.00108945890027077!GO:0040008;regulation of growth;0.0011070631723706!GO:0046474;glycerophospholipid biosynthetic process;0.00114188307925321!GO:0016197;endosome transport;0.00114188307925321!GO:0007243;protein kinase cascade;0.00114660572635499!GO:0018196;peptidyl-asparagine modification;0.00116293269030956!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00116293269030956!GO:0006612;protein targeting to membrane;0.00127550183539081!GO:0019222;regulation of metabolic process;0.00127939590121216!GO:0031072;heat shock protein binding;0.00127939590121216!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00128772369632564!GO:0045892;negative regulation of transcription, DNA-dependent;0.00139419089283377!GO:0003729;mRNA binding;0.00139902039589463!GO:0006839;mitochondrial transport;0.00140473672573676!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00159856272411471!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00159856272411471!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00159856272411471!GO:0051252;regulation of RNA metabolic process;0.00159975622080037!GO:0051168;nuclear export;0.0016510884764922!GO:0043681;protein import into mitochondrion;0.00181852541572893!GO:0007050;cell cycle arrest;0.00182760713480857!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0019862113028869!GO:0007264;small GTPase mediated signal transduction;0.00199083667216158!GO:0030134;ER to Golgi transport vesicle;0.00201629329466229!GO:0006892;post-Golgi vesicle-mediated transport;0.00204407604055404!GO:0043284;biopolymer biosynthetic process;0.00215709929229097!GO:0003779;actin binding;0.00218210916990262!GO:0016044;membrane organization and biogenesis;0.0022337661992797!GO:0003899;DNA-directed RNA polymerase activity;0.0022337661992797!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00228937048434724!GO:0000082;G1/S transition of mitotic cell cycle;0.00232602109095936!GO:0048500;signal recognition particle;0.0025771331632165!GO:0030127;COPII vesicle coat;0.002645788198486!GO:0012507;ER to Golgi transport vesicle membrane;0.002645788198486!GO:0004177;aminopeptidase activity;0.00274526307408965!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00278240043354403!GO:0019843;rRNA binding;0.00286509669489551!GO:0030660;Golgi-associated vesicle membrane;0.00292958096189049!GO:0006414;translational elongation;0.00294087684998458!GO:0051128;regulation of cellular component organization and biogenesis;0.00295236460608031!GO:0015631;tubulin binding;0.00299355194888274!GO:0006626;protein targeting to mitochondrion;0.00340011919051692!GO:0043488;regulation of mRNA stability;0.0035133086394126!GO:0043487;regulation of RNA stability;0.0035133086394126!GO:0065007;biological regulation;0.0035133086394126!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00368725604443791!GO:0030027;lamellipodium;0.00369432081667921!GO:0045941;positive regulation of transcription;0.00379022036655012!GO:0017166;vinculin binding;0.00381994621386794!GO:0008139;nuclear localization sequence binding;0.00403555890626141!GO:0007006;mitochondrial membrane organization and biogenesis;0.00403884142026027!GO:0043492;ATPase activity, coupled to movement of substances;0.00407985041069462!GO:0016363;nuclear matrix;0.00410079718137223!GO:0008186;RNA-dependent ATPase activity;0.00416563247146351!GO:0009165;nucleotide biosynthetic process;0.00416563247146351!GO:0030659;cytoplasmic vesicle membrane;0.00445609888258164!GO:0004674;protein serine/threonine kinase activity;0.00450892940206369!GO:0008022;protein C-terminus binding;0.00458818861119381!GO:0000059;protein import into nucleus, docking;0.00478405126627319!GO:0000075;cell cycle checkpoint;0.00503879365347705!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00509310438933449!GO:0001726;ruffle;0.0051342092548312!GO:0030521;androgen receptor signaling pathway;0.00516087215692995!GO:0003690;double-stranded DNA binding;0.00518298695857589!GO:0045893;positive regulation of transcription, DNA-dependent;0.00532067929200656!GO:0048487;beta-tubulin binding;0.00576939460099348!GO:0046489;phosphoinositide biosynthetic process;0.00625692885634052!GO:0048468;cell development;0.00640993722993803!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00640993722993803!GO:0015002;heme-copper terminal oxidase activity;0.00640993722993803!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00640993722993803!GO:0004129;cytochrome-c oxidase activity;0.00640993722993803!GO:0007051;spindle organization and biogenesis;0.0064695227421684!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00665947810104965!GO:0045047;protein targeting to ER;0.00665947810104965!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00675662495095859!GO:0006402;mRNA catabolic process;0.0069225853247086!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0070113765577452!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00737710404806153!GO:0030118;clathrin coat;0.00758005608157117!GO:0051087;chaperone binding;0.00772769246470937!GO:0045045;secretory pathway;0.00782641701161931!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00799920280016098!GO:0006509;membrane protein ectodomain proteolysis;0.00811401728948816!GO:0033619;membrane protein proteolysis;0.00811401728948816!GO:0046483;heterocycle metabolic process;0.00820434662192559!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00822449507619118!GO:0065009;regulation of a molecular function;0.00822449507619118!GO:0035258;steroid hormone receptor binding;0.00833600012572108!GO:0003682;chromatin binding;0.00854455055503077!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00865218477206483!GO:0030041;actin filament polymerization;0.00889319262888118!GO:0005869;dynactin complex;0.00912314413943571!GO:0006650;glycerophospholipid metabolic process;0.0091327986410967!GO:0019752;carboxylic acid metabolic process;0.0091476684999714!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00918456881701449!GO:0006595;polyamine metabolic process;0.0095561483211171!GO:0006383;transcription from RNA polymerase III promoter;0.00959257617143925!GO:0008154;actin polymerization and/or depolymerization;0.00959507319851324!GO:0008047;enzyme activator activity;0.00979573614304205!GO:0030176;integral to endoplasmic reticulum membrane;0.00985425065902308!GO:0008312;7S RNA binding;0.00989998863375735!GO:0000049;tRNA binding;0.0099716418415247!GO:0006082;organic acid metabolic process;0.00997195641402836!GO:0051287;NAD binding;0.0101733455595093!GO:0004004;ATP-dependent RNA helicase activity;0.01019919080644!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.01019919080644!GO:0031543;peptidyl-proline dioxygenase activity;0.0102791475595503!GO:0005583;fibrillar collagen;0.0104078566600857!GO:0003684;damaged DNA binding;0.0104602047168184!GO:0005801;cis-Golgi network;0.0104804420830083!GO:0003746;translation elongation factor activity;0.0109423683679509!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0117896656057862!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0117896656057862!GO:0051101;regulation of DNA binding;0.0122024222645802!GO:0005684;U2-dependent spliceosome;0.0123978297083445!GO:0030125;clathrin vesicle coat;0.0125283951766086!GO:0030665;clathrin coated vesicle membrane;0.0125283951766086!GO:0003711;transcription elongation regulator activity;0.0125821856565774!GO:0030833;regulation of actin filament polymerization;0.0126046542194048!GO:0046467;membrane lipid biosynthetic process;0.0126310815274533!GO:0006352;transcription initiation;0.0126467765674135!GO:0031625;ubiquitin protein ligase binding;0.0128387482191559!GO:0030880;RNA polymerase complex;0.0130514230665298!GO:0006740;NADPH regeneration;0.0131461618535785!GO:0006098;pentose-phosphate shunt;0.0131461618535785!GO:0048518;positive regulation of biological process;0.0131849141019296!GO:0000339;RNA cap binding;0.0132984963227027!GO:0001527;microfibril;0.0134938379846624!GO:0005856;cytoskeleton;0.0135623589234017!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0137272260245416!GO:0006261;DNA-dependent DNA replication;0.0138003058057598!GO:0007030;Golgi organization and biogenesis;0.0140923645600026!GO:0008033;tRNA processing;0.0144544987671923!GO:0022890;inorganic cation transmembrane transporter activity;0.0145005354794268!GO:0044433;cytoplasmic vesicle part;0.0148009716617462!GO:0051052;regulation of DNA metabolic process;0.0151177382992568!GO:0042802;identical protein binding;0.0151556886570611!GO:0031418;L-ascorbic acid binding;0.0152214774181711!GO:0031529;ruffle organization and biogenesis;0.0152793874583314!GO:0048144;fibroblast proliferation;0.0153336858876131!GO:0048145;regulation of fibroblast proliferation;0.0153336858876131!GO:0031901;early endosome membrane;0.0154187269174537!GO:0005100;Rho GTPase activator activity;0.0157340011927562!GO:0050681;androgen receptor binding;0.0160842403963943!GO:0043022;ribosome binding;0.0161051717420857!GO:0030032;lamellipodium biogenesis;0.0162420779311574!GO:0044452;nucleolar part;0.0162420779311574!GO:0005637;nuclear inner membrane;0.0164406911686113!GO:0008180;signalosome;0.0164846196979549!GO:0008610;lipid biosynthetic process;0.0174704666826414!GO:0031124;mRNA 3'-end processing;0.0174704666826414!GO:0016301;kinase activity;0.0174938148599963!GO:0005874;microtubule;0.0178519370162414!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0179377556623943!GO:0005862;muscle thin filament tropomyosin;0.0180184250225294!GO:0008632;apoptotic program;0.018136785671708!GO:0048146;positive regulation of fibroblast proliferation;0.018219733885589!GO:0016791;phosphoric monoester hydrolase activity;0.0183030012711656!GO:0016272;prefoldin complex;0.0183488870503775!GO:0009112;nucleobase metabolic process;0.0184284208334136!GO:0045792;negative regulation of cell size;0.0187901157664675!GO:0009967;positive regulation of signal transduction;0.0188808707433598!GO:0019798;procollagen-proline dioxygenase activity;0.0191341694629584!GO:0022415;viral reproductive process;0.0199557213380983!GO:0007040;lysosome organization and biogenesis;0.0199557213380983!GO:0005669;transcription factor TFIID complex;0.0199889703932909!GO:0030308;negative regulation of cell growth;0.0203631947118498!GO:0006818;hydrogen transport;0.0203631947118498!GO:0015992;proton transport;0.0204246357652062!GO:0006497;protein amino acid lipidation;0.0205071875007206!GO:0006778;porphyrin metabolic process;0.0209378560165469!GO:0033013;tetrapyrrole metabolic process;0.0209378560165469!GO:0016311;dephosphorylation;0.0213849169213817!GO:0006401;RNA catabolic process;0.0217405839975272!GO:0005581;collagen;0.0218716585064664!GO:0031272;regulation of pseudopodium formation;0.0220268801503105!GO:0031269;pseudopodium formation;0.0220268801503105!GO:0031344;regulation of cell projection organization and biogenesis;0.0220268801503105!GO:0031268;pseudopodium organization and biogenesis;0.0220268801503105!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0220268801503105!GO:0031274;positive regulation of pseudopodium formation;0.0220268801503105!GO:0006607;NLS-bearing substrate import into nucleus;0.0220611043257243!GO:0005832;chaperonin-containing T-complex;0.0221730825490011!GO:0007265;Ras protein signal transduction;0.022210774294686!GO:0044420;extracellular matrix part;0.0226039766958773!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.022882480250359!GO:0033043;regulation of organelle organization and biogenesis;0.022882480250359!GO:0043433;negative regulation of transcription factor activity;0.0234047741299193!GO:0003756;protein disulfide isomerase activity;0.0234047741299193!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0234047741299193!GO:0008243;plasminogen activator activity;0.0242492896966244!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0244278250215759!GO:0000428;DNA-directed RNA polymerase complex;0.0244278250215759!GO:0006144;purine base metabolic process;0.0246968383884642!GO:0003678;DNA helicase activity;0.024832717213873!GO:0051098;regulation of binding;0.0255888332850262!GO:0006302;double-strand break repair;0.0258040120685914!GO:0006611;protein export from nucleus;0.0259203262957411!GO:0033673;negative regulation of kinase activity;0.0261775064803809!GO:0006469;negative regulation of protein kinase activity;0.0261775064803809!GO:0035035;histone acetyltransferase binding;0.0264230017208219!GO:0030384;phosphoinositide metabolic process;0.0271415275829978!GO:0030119;AP-type membrane coat adaptor complex;0.0274278959570342!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0276290218721327!GO:0012506;vesicle membrane;0.0279502652235612!GO:0005096;GTPase activator activity;0.0283414413401421!GO:0007052;mitotic spindle organization and biogenesis;0.0286808325971313!GO:0006417;regulation of translation;0.0286808325971313!GO:0030518;steroid hormone receptor signaling pathway;0.0286955982391905!GO:0009225;nucleotide-sugar metabolic process;0.0286955982391905!GO:0050811;GABA receptor binding;0.0287464853813349!GO:0007021;tubulin folding;0.028818446263133!GO:0004722;protein serine/threonine phosphatase activity;0.0289835756477655!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0294539817165222!GO:0008287;protein serine/threonine phosphatase complex;0.0301189760300083!GO:0030508;thiol-disulfide exchange intermediate activity;0.0307302262392141!GO:0016126;sterol biosynthetic process;0.0313168385871875!GO:0042168;heme metabolic process;0.0317527861956848!GO:0016860;intramolecular oxidoreductase activity;0.0318548601480317!GO:0000786;nucleosome;0.0319690024045036!GO:0000776;kinetochore;0.0327257608069804!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0328929684269944!GO:0006354;RNA elongation;0.0338510508052537!GO:0005938;cell cortex;0.0340045758059386!GO:0000118;histone deacetylase complex;0.0340122889151318!GO:0016408;C-acyltransferase activity;0.0342212964348293!GO:0016251;general RNA polymerase II transcription factor activity;0.034283922222145!GO:0051348;negative regulation of transferase activity;0.0343743979707944!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0344579697241353!GO:0018193;peptidyl-amino acid modification;0.0350750074935374!GO:0006289;nucleotide-excision repair;0.0353523278172165!GO:0030145;manganese ion binding;0.0354025169714995!GO:0042158;lipoprotein biosynthetic process;0.0359629152779791!GO:0006739;NADP metabolic process;0.0363401319401237!GO:0050178;phenylpyruvate tautomerase activity;0.0364967354830597!GO:0006979;response to oxidative stress;0.0365151494033169!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0370653149177236!GO:0030911;TPR domain binding;0.0372786891471928!GO:0030433;ER-associated protein catabolic process;0.0375237907042741!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0375237907042741!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0378200673308058!GO:0006506;GPI anchor biosynthetic process;0.0383244295466939!GO:0006984;ER-nuclear signaling pathway;0.0387940316168367!GO:0008234;cysteine-type peptidase activity;0.0388672633623076!GO:0000209;protein polyubiquitination;0.0390993115697836!GO:0031371;ubiquitin conjugating enzyme complex;0.0400447286944068!GO:0032984;macromolecular complex disassembly;0.0402284668079297!GO:0007033;vacuole organization and biogenesis;0.0405213135832917!GO:0009116;nucleoside metabolic process;0.0411386515246166!GO:0006007;glucose catabolic process;0.0411649841789687!GO:0016584;nucleosome positioning;0.0413967316256945!GO:0019206;nucleoside kinase activity;0.0415795270852184!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0415795270852184!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0415795270852184!GO:0045936;negative regulation of phosphate metabolic process;0.0422054228287234!GO:0006779;porphyrin biosynthetic process;0.0422054228287234!GO:0033014;tetrapyrrole biosynthetic process;0.0422054228287234!GO:0000287;magnesium ion binding;0.0427926652652759!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0428832546690821!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0428832546690821!GO:0045334;clathrin-coated endocytic vesicle;0.0431196928784839!GO:0031323;regulation of cellular metabolic process;0.0434581188046456!GO:0001872;zymosan binding;0.0436284647568318!GO:0001878;response to yeast;0.0436284647568318!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0436284647568318!GO:0001725;stress fiber;0.0439280404888719!GO:0032432;actin filament bundle;0.0439280404888719!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0441728870827627!GO:0030131;clathrin adaptor complex;0.0444909358271633!GO:0008629;induction of apoptosis by intracellular signals;0.0449582315419085!GO:0009081;branched chain family amino acid metabolic process;0.0449582315419085!GO:0005099;Ras GTPase activator activity;0.0449582315419085!GO:0007034;vacuolar transport;0.0452648910120977!GO:0051539;4 iron, 4 sulfur cluster binding;0.0453107230656387!GO:0007088;regulation of mitosis;0.0455221344954786!GO:0022408;negative regulation of cell-cell adhesion;0.0455221344954786!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0458779593555966!GO:0007093;mitotic cell cycle checkpoint;0.0458779593555966!GO:0004721;phosphoprotein phosphatase activity;0.0462902000311926!GO:0031301;integral to organelle membrane;0.0464139938133925!GO:0051059;NF-kappaB binding;0.0464139938133925!GO:0031902;late endosome membrane;0.04691569267044!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0474391415692116!GO:0045926;negative regulation of growth;0.0486287931854075!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0496036819455586!GO:0008538;proteasome activator activity;0.0496473686848805!GO:0030496;midbody;0.0498559946505281 | |||
|sample_id=10729 | |sample_id=10729 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=peripheral nervous system | |sample_tissue=peripheral nervous system | ||
|top_motifs=HMGA1,2:1.68413699071;HES1:1.62530119785;SRF:1.60725185296;FOXL1:1.52938825048;GLI1..3:1.51403729324;MYBL2:1.46397376622;EVI1:1.46176124247;TAL1_TCF{3,4,12}:1.37121486141;GCM1,2:1.32347676823;ALX4:1.31539069128;XBP1:1.31288351806;TEAD1:1.30970937179;HIF1A:1.29960337201;NKX3-1:1.24193619087;NR3C1:1.22150596783;HAND1,2:1.15937315497;NKX2-2,8:1.1583529186;UFEwm:1.1283337637;HOX{A5,B5}:1.0841615408;TFAP4:1.06865765863;ADNP_IRX_SIX_ZHX:1.05145809834;ZNF384:0.978348783252;NFATC1..3:0.969999326389;IKZF1:0.965246258982;HBP1_HMGB_SSRP1_UBTF:0.960254133127;TFAP2{A,C}:0.957745020603;MAFB:0.93127843027;TFAP2B:0.880123541249;KLF4:0.87898660429;XCPE1{core}:0.824861202006;ZNF423:0.814189888375;PITX1..3:0.788696763395;GTF2A1,2:0.786031576863;ZIC1..3:0.785893864778;TOPORS:0.781623435929;MTE{core}:0.776838704692;TEF:0.768619263187;LHX3,4:0.756501801403;HMX1:0.755896813533;SOX17:0.755681414996;NFE2L1:0.755483264564;MAZ:0.747930874044;GFI1B:0.733022853629;POU5F1:0.73160033243;TLX1..3_NFIC{dimer}:0.711507384578;AIRE:0.673100834055;TP53:0.669461319584;PAX4:0.667947971093;HIC1:0.642148337972;TBX4,5:0.588597943192;ZNF148:0.583641787166;NKX2-1,4:0.579269846429;EN1,2:0.57448434064;EBF1:0.554826935366;PRDM1:0.547488158209;TFCP2:0.538903134204;GTF2I:0.531830175019;GATA4:0.52567700171;FOXP1:0.524959483323;AHR_ARNT_ARNT2:0.511200204528;PATZ1:0.501420013902;RXR{A,B,G}:0.498703445841;ESR1:0.484976740541;HSF1,2:0.481138965476;PAX1,9:0.47521015133;POU3F1..4:0.45276621599;VSX1,2:0.444550728675;EGR1..3:0.426515071195;RXRA_VDR{dimer}:0.418932724533;POU1F1:0.414667647809;PAX3,7:0.376145976016;MZF1:0.374585316123;GZF1:0.348759814983;PAX8:0.319227011738;LEF1_TCF7_TCF7L1,2:0.315640837949;MEF2{A,B,C,D}:0.308642109287;HLF:0.268910294515;DBP:0.245157705465;ATF6:0.237117299006;MED-1{core}:0.218433474118;CDC5L:0.216125393861;STAT2,4,6:0.214800020702;STAT5{A,B}:0.212482678298;TFDP1:0.209597151338;NANOG{mouse}:0.183916559949;ZBTB6:0.174146695315;ZNF238:0.163355151028;MTF1:0.156376519458;NFE2L2:0.0988191871385;TBP:0.0897286405154;FOXA2:0.0891956172087;HOX{A4,D4}:0.0855404066907;NKX3-2:0.0849046991832;PPARG:0.0229614305241;SMAD1..7,9:0.0158887997427;PAX6:0.00824440045023;GFI1:-0.00841357111593;MYFfamily:-0.022782972603;POU6F1:-0.0235563406185;ZFP161:-0.0274375360636;ZBTB16:-0.0481727924388;NFIX:-0.0504796768107;BACH2:-0.0528634617877;CRX:-0.0534587199843;AR:-0.0655449549645;SPZ1:-0.0846949293519;FOSL2:-0.0864102822998;SP1:-0.0879385919399;HNF1A:-0.0978753047864;ONECUT1,2:-0.105448895241;PAX5:-0.106471919901;FOS_FOS{B,L1}_JUN{B,D}:-0.121205347238;MYB:-0.125266671582;RREB1:-0.134701589393;PRRX1,2:-0.153095731184;BREu{core}:-0.166358071657;SOX2:-0.168196481136;FOXD3:-0.169305958538;REST:-0.18343393799;ZNF143:-0.186618617239;RUNX1..3:-0.192820382585;IRF1,2:-0.198036681281;SOX5:-0.209129169911;ARID5B:-0.211663681136;CEBPA,B_DDIT3:-0.214793265662;FOX{F1,F2,J1}:-0.260711567448;NFE2:-0.279043584838;PAX2:-0.283606188305;NHLH1,2:-0.311650800021;NR6A1:-0.315318198121;FOXQ1:-0.330142734705;bHLH_family:-0.332536918665;NFKB1_REL_RELA:-0.347159589347;IKZF2:-0.359507451242;RFX1:-0.373790853379;DMAP1_NCOR{1,2}_SMARC:-0.374857856632;FOXM1:-0.403665290035;ATF2:-0.405740292308;E2F1..5:-0.40991997488;CUX2:-0.412412449887;T:-0.441037085169;CDX1,2,4:-0.442706277405;FOXO1,3,4:-0.444573649574;JUN:-0.446072842782;ETS1,2:-0.485539572143;ATF5_CREB3:-0.492115481956;HOXA9_MEIS1:-0.493247089845;GATA6:-0.494476412757;ATF4:-0.500499662652;POU2F1..3:-0.502870213009;SPI1:-0.526098762113;NRF1:-0.531514516819;RORA:-0.53642081658;TGIF1:-0.537559489451;CREB1:-0.539532170831;SOX{8,9,10}:-0.549780527179;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.55224762526;TLX2:-0.55560526905;HOX{A6,A7,B6,B7}:-0.558222573982;HNF4A_NR2F1,2:-0.562620592395;NKX2-3_NKX2-5:-0.567012645424;OCT4_SOX2{dimer}:-0.602134524188;FOX{D1,D2}:-0.603592732321;LMO2:-0.603857599706;ELK1,4_GABP{A,B1}:-0.625271172583;SNAI1..3:-0.665244054513;PDX1:-0.667234210605;ALX1:-0.682408702318;EP300:-0.724308801279;IRF7:-0.724493073864;SPIB:-0.744352805412;NR5A1,2:-0.7462622601;NANOG:-0.755205860264;ELF1,2,4:-0.764177071943;YY1:-0.77980291001;NFIL3:-0.779814287483;ESRRA:-0.783323768735;NKX6-1,2:-0.800172964497;BPTF:-0.80157439893;FOXN1:-0.819532836762;ZEB1:-0.854503438349;RBPJ:-0.855753528264;FOX{I1,J2}:-0.878056719166;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.893884852864;FOXP3:-1.03435312426;NFY{A,B,C}:-1.07234055004;SREBF1,2:-1.17923185864;MYOD1:-1.24150932101;NR1H4:-1.25249372437;STAT1,3:-1.28440363087;RFX2..5_RFXANK_RFXAP:-1.42497681702;PBX1:-1.42693790254 | |top_motifs=HMGA1,2:1.68413699071;HES1:1.62530119785;SRF:1.60725185296;FOXL1:1.52938825048;GLI1..3:1.51403729324;MYBL2:1.46397376622;EVI1:1.46176124247;TAL1_TCF{3,4,12}:1.37121486141;GCM1,2:1.32347676823;ALX4:1.31539069128;XBP1:1.31288351806;TEAD1:1.30970937179;HIF1A:1.29960337201;NKX3-1:1.24193619087;NR3C1:1.22150596783;HAND1,2:1.15937315497;NKX2-2,8:1.1583529186;UFEwm:1.1283337637;HOX{A5,B5}:1.0841615408;TFAP4:1.06865765863;ADNP_IRX_SIX_ZHX:1.05145809834;ZNF384:0.978348783252;NFATC1..3:0.969999326389;IKZF1:0.965246258982;HBP1_HMGB_SSRP1_UBTF:0.960254133127;TFAP2{A,C}:0.957745020603;MAFB:0.93127843027;TFAP2B:0.880123541249;KLF4:0.87898660429;XCPE1{core}:0.824861202006;ZNF423:0.814189888375;PITX1..3:0.788696763395;GTF2A1,2:0.786031576863;ZIC1..3:0.785893864778;TOPORS:0.781623435929;MTE{core}:0.776838704692;TEF:0.768619263187;LHX3,4:0.756501801403;HMX1:0.755896813533;SOX17:0.755681414996;NFE2L1:0.755483264564;MAZ:0.747930874044;GFI1B:0.733022853629;POU5F1:0.73160033243;TLX1..3_NFIC{dimer}:0.711507384578;AIRE:0.673100834055;TP53:0.669461319584;PAX4:0.667947971093;HIC1:0.642148337972;TBX4,5:0.588597943192;ZNF148:0.583641787166;NKX2-1,4:0.579269846429;EN1,2:0.57448434064;EBF1:0.554826935366;PRDM1:0.547488158209;TFCP2:0.538903134204;GTF2I:0.531830175019;GATA4:0.52567700171;FOXP1:0.524959483323;AHR_ARNT_ARNT2:0.511200204528;PATZ1:0.501420013902;RXR{A,B,G}:0.498703445841;ESR1:0.484976740541;HSF1,2:0.481138965476;PAX1,9:0.47521015133;POU3F1..4:0.45276621599;VSX1,2:0.444550728675;EGR1..3:0.426515071195;RXRA_VDR{dimer}:0.418932724533;POU1F1:0.414667647809;PAX3,7:0.376145976016;MZF1:0.374585316123;GZF1:0.348759814983;PAX8:0.319227011738;LEF1_TCF7_TCF7L1,2:0.315640837949;MEF2{A,B,C,D}:0.308642109287;HLF:0.268910294515;DBP:0.245157705465;ATF6:0.237117299006;MED-1{core}:0.218433474118;CDC5L:0.216125393861;STAT2,4,6:0.214800020702;STAT5{A,B}:0.212482678298;TFDP1:0.209597151338;NANOG{mouse}:0.183916559949;ZBTB6:0.174146695315;ZNF238:0.163355151028;MTF1:0.156376519458;NFE2L2:0.0988191871385;TBP:0.0897286405154;FOXA2:0.0891956172087;HOX{A4,D4}:0.0855404066907;NKX3-2:0.0849046991832;PPARG:0.0229614305241;SMAD1..7,9:0.0158887997427;PAX6:0.00824440045023;GFI1:-0.00841357111593;MYFfamily:-0.022782972603;POU6F1:-0.0235563406185;ZFP161:-0.0274375360636;ZBTB16:-0.0481727924388;NFIX:-0.0504796768107;BACH2:-0.0528634617877;CRX:-0.0534587199843;AR:-0.0655449549645;SPZ1:-0.0846949293519;FOSL2:-0.0864102822998;SP1:-0.0879385919399;HNF1A:-0.0978753047864;ONECUT1,2:-0.105448895241;PAX5:-0.106471919901;FOS_FOS{B,L1}_JUN{B,D}:-0.121205347238;MYB:-0.125266671582;RREB1:-0.134701589393;PRRX1,2:-0.153095731184;BREu{core}:-0.166358071657;SOX2:-0.168196481136;FOXD3:-0.169305958538;REST:-0.18343393799;ZNF143:-0.186618617239;RUNX1..3:-0.192820382585;IRF1,2:-0.198036681281;SOX5:-0.209129169911;ARID5B:-0.211663681136;CEBPA,B_DDIT3:-0.214793265662;FOX{F1,F2,J1}:-0.260711567448;NFE2:-0.279043584838;PAX2:-0.283606188305;NHLH1,2:-0.311650800021;NR6A1:-0.315318198121;FOXQ1:-0.330142734705;bHLH_family:-0.332536918665;NFKB1_REL_RELA:-0.347159589347;IKZF2:-0.359507451242;RFX1:-0.373790853379;DMAP1_NCOR{1,2}_SMARC:-0.374857856632;FOXM1:-0.403665290035;ATF2:-0.405740292308;E2F1..5:-0.40991997488;CUX2:-0.412412449887;T:-0.441037085169;CDX1,2,4:-0.442706277405;FOXO1,3,4:-0.444573649574;JUN:-0.446072842782;ETS1,2:-0.485539572143;ATF5_CREB3:-0.492115481956;HOXA9_MEIS1:-0.493247089845;GATA6:-0.494476412757;ATF4:-0.500499662652;POU2F1..3:-0.502870213009;SPI1:-0.526098762113;NRF1:-0.531514516819;RORA:-0.53642081658;TGIF1:-0.537559489451;CREB1:-0.539532170831;SOX{8,9,10}:-0.549780527179;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.55224762526;TLX2:-0.55560526905;HOX{A6,A7,B6,B7}:-0.558222573982;HNF4A_NR2F1,2:-0.562620592395;NKX2-3_NKX2-5:-0.567012645424;OCT4_SOX2{dimer}:-0.602134524188;FOX{D1,D2}:-0.603592732321;LMO2:-0.603857599706;ELK1,4_GABP{A,B1}:-0.625271172583;SNAI1..3:-0.665244054513;PDX1:-0.667234210605;ALX1:-0.682408702318;EP300:-0.724308801279;IRF7:-0.724493073864;SPIB:-0.744352805412;NR5A1,2:-0.7462622601;NANOG:-0.755205860264;ELF1,2,4:-0.764177071943;YY1:-0.77980291001;NFIL3:-0.779814287483;ESRRA:-0.783323768735;NKX6-1,2:-0.800172964497;BPTF:-0.80157439893;FOXN1:-0.819532836762;ZEB1:-0.854503438349;RBPJ:-0.855753528264;FOX{I1,J2}:-0.878056719166;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.893884852864;FOXP3:-1.03435312426;NFY{A,B,C}:-1.07234055004;SREBF1,2:-1.17923185864;MYOD1:-1.24150932101;NR1H4:-1.25249372437;STAT1,3:-1.28440363087;RFX2..5_RFXANK_RFXAP:-1.42497681702;PBX1:-1.42693790254 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10729-110A9;search_select_hide=table117:FF:10729-110A9 | |||
}} | }} | ||
Latest revision as of 15:02, 3 June 2020
| Name: | neurofibroma cell line:Hs 53.T |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11854 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11854
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11854
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.723 |
| 10 | 10 | 0.245 |
| 100 | 100 | 0.512 |
| 101 | 101 | 0.35 |
| 102 | 102 | 0.0571 |
| 103 | 103 | 0.592 |
| 104 | 104 | 0.697 |
| 105 | 105 | 0.58 |
| 106 | 106 | 0.0688 |
| 107 | 107 | 0.0123 |
| 108 | 108 | 0.125 |
| 109 | 109 | 0.306 |
| 11 | 11 | 0.777 |
| 110 | 110 | 0.675 |
| 111 | 111 | 0.847 |
| 112 | 112 | 0.395 |
| 113 | 113 | 0.177 |
| 114 | 114 | 0.329 |
| 115 | 115 | 0.0937 |
| 116 | 116 | 0.0207 |
| 117 | 117 | 0.0894 |
| 118 | 118 | 0.241 |
| 119 | 119 | 0.279 |
| 12 | 12 | 0.338 |
| 120 | 120 | 0.926 |
| 121 | 121 | 0.929 |
| 122 | 122 | 0.356 |
| 123 | 123 | 0.64 |
| 124 | 124 | 0.599 |
| 125 | 125 | 0.806 |
| 126 | 126 | 0.351 |
| 127 | 127 | 0.413 |
| 128 | 128 | 0.235 |
| 129 | 129 | 0.14 |
| 13 | 13 | 0.214 |
| 130 | 130 | 0.711 |
| 131 | 131 | 0.821 |
| 132 | 132 | 0.17 |
| 133 | 133 | 0.358 |
| 134 | 134 | 0.483 |
| 135 | 135 | 0.658 |
| 136 | 136 | 0.39 |
| 137 | 137 | 0.136 |
| 138 | 138 | 0.553 |
| 139 | 139 | 0.355 |
| 14 | 14 | 0.265 |
| 140 | 140 | 0.985 |
| 141 | 141 | 0.588 |
| 142 | 142 | 0.545 |
| 143 | 143 | 0.956 |
| 144 | 144 | 0.696 |
| 145 | 145 | 0.756 |
| 146 | 146 | 0.337 |
| 147 | 147 | 0.0552 |
| 148 | 148 | 0.0343 |
| 149 | 149 | 0.0529 |
| 15 | 15 | 0.564 |
| 150 | 150 | 0.133 |
| 151 | 151 | 0.678 |
| 152 | 152 | 0.0395 |
| 153 | 153 | 0.433 |
| 154 | 154 | 0.237 |
| 155 | 155 | 0.0118 |
| 156 | 156 | 0.379 |
| 157 | 157 | 0.217 |
| 158 | 158 | 0.00158 |
| 159 | 159 | 0.158 |
| 16 | 16 | 0.0674 |
| 160 | 160 | 0.774 |
| 161 | 161 | 0.6 |
| 162 | 162 | 0.243 |
| 163 | 163 | 0.525 |
| 164 | 164 | 0.471 |
| 165 | 165 | 0.316 |
| 166 | 166 | 0.0184 |
| 167 | 167 | 0.737 |
| 168 | 168 | 0.477 |
| 169 | 169 | 0.346 |
| 17 | 17 | 0.539 |
| 18 | 18 | 0.0772 |
| 19 | 19 | 0.0772 |
| 2 | 2 | 0.507 |
| 20 | 20 | 0.47 |
| 21 | 21 | 0.104 |
| 22 | 22 | 0.703 |
| 23 | 23 | 0.0701 |
| 24 | 24 | 0.194 |
| 25 | 25 | 0.216 |
| 26 | 26 | 0.688 |
| 27 | 27 | 0.87 |
| 28 | 28 | 0.377 |
| 29 | 29 | 0.134 |
| 3 | 3 | 0.823 |
| 30 | 30 | 0.43 |
| 31 | 31 | 0.512 |
| 32 | 32 | 1.53443e-12 |
| 33 | 33 | 0.498 |
| 34 | 34 | 0.617 |
| 35 | 35 | 0.145 |
| 36 | 36 | 0.0277 |
| 37 | 37 | 0.962 |
| 38 | 38 | 0.453 |
| 39 | 39 | 0.207 |
| 4 | 4 | 0.748 |
| 40 | 40 | 0.0408 |
| 41 | 41 | 0.535 |
| 42 | 42 | 0.62 |
| 43 | 43 | 0.943 |
| 44 | 44 | 0.806 |
| 45 | 45 | 0.977 |
| 46 | 46 | 0.379 |
| 47 | 47 | 0.686 |
| 48 | 48 | 0.856 |
| 49 | 49 | 0.837 |
| 5 | 5 | 0.415 |
| 50 | 50 | 0.489 |
| 51 | 51 | 0.807 |
| 52 | 52 | 0.27 |
| 53 | 53 | 0.83 |
| 54 | 54 | 0.659 |
| 55 | 55 | 0.206 |
| 56 | 56 | 0.897 |
| 57 | 57 | 0.383 |
| 58 | 58 | 0.351 |
| 59 | 59 | 0.412 |
| 6 | 6 | 0.447 |
| 60 | 60 | 0.451 |
| 61 | 61 | 0.446 |
| 62 | 62 | 0.874 |
| 63 | 63 | 0.443 |
| 64 | 64 | 0.69 |
| 65 | 65 | 0.572 |
| 66 | 66 | 0.569 |
| 67 | 67 | 0.974 |
| 68 | 68 | 0.384 |
| 69 | 69 | 0.523 |
| 7 | 7 | 0.272 |
| 70 | 70 | 0.44 |
| 71 | 71 | 0.462 |
| 72 | 72 | 0.289 |
| 73 | 73 | 0.12 |
| 74 | 74 | 0.268 |
| 75 | 75 | 0.284 |
| 76 | 76 | 0.274 |
| 77 | 77 | 0.153 |
| 78 | 78 | 0.151 |
| 79 | 79 | 0.0143 |
| 8 | 8 | 0.127 |
| 80 | 80 | 0.285 |
| 81 | 81 | 0.73 |
| 82 | 82 | 0.67 |
| 83 | 83 | 0.292 |
| 84 | 84 | 0.926 |
| 85 | 85 | 0.0508 |
| 86 | 86 | 0.81 |
| 87 | 87 | 0.824 |
| 88 | 88 | 0.456 |
| 89 | 89 | 0.661 |
| 9 | 9 | 0.994 |
| 90 | 90 | 0.977 |
| 91 | 91 | 0.741 |
| 92 | 92 | 0.15 |
| 93 | 93 | 0.839 |
| 94 | 94 | 0.393 |
| 95 | 95 | 0.326 |
| 96 | 96 | 0.946 |
| 97 | 97 | 0.624 |
| 98 | 98 | 0.539 |
| 99 | 99 | 0.00513 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11854
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103046 neurofibroma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
1192 (peripheral nervous system neoplasm)
3193 (peripheral nerve sheath neoplasm)
962 (neurofibroma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103225 (neurilemoma cell line sample)
0103046 (neurofibroma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
