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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004745
|DRA_sample_Accession=CAGE@SAMD00004745
|accession_numbers=CAGE;DRX007919;DRR008791;DRZ000216;DRZ001601
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004745
|accession_numbers=CAGE;DRX007919;DRR008791;DRZ000216;DRZ001601;DRZ011566;DRZ012951
|accession_numbers_RNASeq=RNA-Seq;DRX057138;DRR062897;DRZ007973
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
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|library_id=CNhs11859
|library_id=CNhs11859
|library_id_phase_based=2:CNhs11859
|library_id_phase_based=2:CNhs11859
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10752
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10752
|name=leukemia, chronic megakaryoblastic cell line:MEG-01
|name=leukemia, chronic megakaryoblastic cell line:MEG-01
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 73: Line 79:
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|sample_category=cell lines
Line 96: Line 103:
|top_motifs=GATA6:3.16373147958;POU2F1..3:2.22450166773;STAT5{A,B}:1.53540906131;MYB:1.49652843162;ALX1:1.46795285066;ZBTB16:1.43762813829;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23527185324;bHLH_family:1.1652923212;AIRE:1.1540467445;EN1,2:1.12801792061;ELK1,4_GABP{A,B1}:1.11172811261;IKZF2:1.07101454692;NFY{A,B,C}:1.06167477292;PITX1..3:1.05256686545;PBX1:1.04247268087;NKX2-1,4:0.974925971391;TOPORS:0.87297266865;MYOD1:0.854480298608;ZNF143:0.85098475077;YY1:0.829326853744;POU1F1:0.815103741133;BREu{core}:0.798551580011;ELF1,2,4:0.782219895416;E2F1..5:0.743286382764;PAX8:0.679503769779;NRF1:0.647168497272;CUX2:0.639519420791;NKX3-1:0.636889106001;RBPJ:0.624599660592;CRX:0.603578695988;ATF4:0.549072369211;POU3F1..4:0.528158566802;ZNF148:0.513250373876;FOXP1:0.507576063934;HIF1A:0.506245537393;OCT4_SOX2{dimer}:0.505230846526;FOXQ1:0.49506981871;ATF5_CREB3:0.488524381037;FOX{I1,J2}:0.479035505795;STAT1,3:0.43976895329;CDX1,2,4:0.402828315466;FOXN1:0.383988152008;SPIB:0.377721989289;NKX6-1,2:0.342447753047;TFDP1:0.304732186766;HOXA9_MEIS1:0.296226478131;EVI1:0.270951472043;POU6F1:0.247556028791;NR5A1,2:0.243796453367;STAT2,4,6:0.238233590246;NR6A1:0.232518641537;IRF7:0.231158103891;SPI1:0.220929588412;ETS1,2:0.219904106833;TLX2:0.211156608374;CREB1:0.174871876105;NFE2:0.145434640536;HOX{A6,A7,B6,B7}:0.133897923027;DMAP1_NCOR{1,2}_SMARC:0.0992898272534;PAX4:0.0942213268676;SOX{8,9,10}:0.0888496992637;RUNX1..3:0.0857653900827;IRF1,2:0.0766642723078;PRRX1,2:0.0611192969918;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000252489716184;SOX17:-0.00261315036452;ZNF384:-0.00462431040719;SRF:-0.00565600676448;PAX3,7:-0.0198136561867;AR:-0.0230369462568;NFIX:-0.0322733985702;LHX3,4:-0.0413208386908;CEBPA,B_DDIT3:-0.0714290476044;HES1:-0.0768695711394;PAX6:-0.0784287492252;NANOG{mouse}:-0.0854753490724;ARID5B:-0.0974725403214;HOX{A4,D4}:-0.103607473509;ADNP_IRX_SIX_ZHX:-0.11138369971;HNF4A_NR2F1,2:-0.112757861762;AHR_ARNT_ARNT2:-0.144159401941;ZFP161:-0.144584027155;FOXD3:-0.146557779173;ATF2:-0.150875461016;NKX2-3_NKX2-5:-0.168256412451;HOX{A5,B5}:-0.188734107341;HSF1,2:-0.190277582138;EP300:-0.200322589775;POU5F1:-0.228699783851;PDX1:-0.270255917947;GFI1:-0.272150903005;NHLH1,2:-0.27315880593;BACH2:-0.2737830145;TEF:-0.28334508169;FOXM1:-0.285844756775;FOSL2:-0.297588323784;FOX{F1,F2,J1}:-0.303059728041;SNAI1..3:-0.311274546038;HIC1:-0.323482360945;RREB1:-0.336387696152;NFKB1_REL_RELA:-0.341813622346;NFIL3:-0.373641089372;NANOG:-0.393170278473;ZNF238:-0.394621081492;RORA:-0.398008418564;FOXP3:-0.406497247982;ONECUT1,2:-0.406579249862;T:-0.425228025518;GATA4:-0.427882844738;PAX2:-0.429927721036;HLF:-0.449591066459;TBP:-0.461940638455;LEF1_TCF7_TCF7L1,2:-0.474099674523;NFE2L2:-0.476827912816;FOS_FOS{B,L1}_JUN{B,D}:-0.48432016808;GZF1:-0.484809748849;ZNF423:-0.496411994977;MED-1{core}:-0.496482960515;HBP1_HMGB_SSRP1_UBTF:-0.520949955955;SOX5:-0.526294526061;HNF1A:-0.528420943992;MTF1:-0.544330869207;FOXA2:-0.594657814471;PPARG:-0.598596932393;CDC5L:-0.599989947423;REST:-0.60129215751;RXR{A,B,G}:-0.603097987162;NFE2L1:-0.606509131845;ZEB1:-0.623609156721;GTF2I:-0.648070734537;KLF4:-0.660644746036;FOX{D1,D2}:-0.665950505476;ZBTB6:-0.670014673255;SREBF1,2:-0.680986352979;EGR1..3:-0.683622346493;XBP1:-0.687385583058;HAND1,2:-0.689696045389;GLI1..3:-0.693926233641;MYFfamily:-0.699716873721;UFEwm:-0.700355125746;VSX1,2:-0.701934468233;DBP:-0.705480216592;MZF1:-0.715226066332;RFX2..5_RFXANK_RFXAP:-0.719834910185;MEF2{A,B,C,D}:-0.721398404881;TFAP2B:-0.727023517069;TFAP2{A,C}:-0.739174770264;MAFB:-0.750046326914;BPTF:-0.753076664978;RXRA_VDR{dimer}:-0.755766692104;RFX1:-0.757812159613;NKX3-2:-0.781978817631;HMGA1,2:-0.793529283487;GCM1,2:-0.79746962649;SOX2:-0.84461503126;PATZ1:-0.84935854987;PAX1,9:-0.858544012554;GTF2A1,2:-0.862258444976;TLX1..3_NFIC{dimer}:-0.87379040625;TP53:-0.875802360501;NKX2-2,8:-0.905237847795;ZIC1..3:-0.90876598699;TGIF1:-0.913213775333;TFAP4:-0.91585843944;MYBL2:-0.928361554745;FOXO1,3,4:-0.93069378082;PAX5:-0.935068220585;SMAD1..7,9:-0.966042702013;SP1:-0.984163217869;MTE{core}:-0.989594663944;NFATC1..3:-1.01691008089;IKZF1:-1.03942263602;MAZ:-1.04061683184;JUN:-1.0475905735;TEAD1:-1.06467106713;SPZ1:-1.07572686675;PRDM1:-1.09051986091;ALX4:-1.12362593881;GFI1B:-1.12614066887;ESRRA:-1.14632887057;FOXL1:-1.16457314222;NR1H4:-1.17679970325;XCPE1{core}:-1.19430247901;TBX4,5:-1.22960202314;LMO2:-1.24058855518;ATF6:-1.3129251629;NR3C1:-1.36470808896;TAL1_TCF{3,4,12}:-1.44373926852;TFCP2:-1.5246259803;ESR1:-1.55853245783;HMX1:-1.89267619605;EBF1:-1.9138092093
|top_motifs=GATA6:3.16373147958;POU2F1..3:2.22450166773;STAT5{A,B}:1.53540906131;MYB:1.49652843162;ALX1:1.46795285066;ZBTB16:1.43762813829;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23527185324;bHLH_family:1.1652923212;AIRE:1.1540467445;EN1,2:1.12801792061;ELK1,4_GABP{A,B1}:1.11172811261;IKZF2:1.07101454692;NFY{A,B,C}:1.06167477292;PITX1..3:1.05256686545;PBX1:1.04247268087;NKX2-1,4:0.974925971391;TOPORS:0.87297266865;MYOD1:0.854480298608;ZNF143:0.85098475077;YY1:0.829326853744;POU1F1:0.815103741133;BREu{core}:0.798551580011;ELF1,2,4:0.782219895416;E2F1..5:0.743286382764;PAX8:0.679503769779;NRF1:0.647168497272;CUX2:0.639519420791;NKX3-1:0.636889106001;RBPJ:0.624599660592;CRX:0.603578695988;ATF4:0.549072369211;POU3F1..4:0.528158566802;ZNF148:0.513250373876;FOXP1:0.507576063934;HIF1A:0.506245537393;OCT4_SOX2{dimer}:0.505230846526;FOXQ1:0.49506981871;ATF5_CREB3:0.488524381037;FOX{I1,J2}:0.479035505795;STAT1,3:0.43976895329;CDX1,2,4:0.402828315466;FOXN1:0.383988152008;SPIB:0.377721989289;NKX6-1,2:0.342447753047;TFDP1:0.304732186766;HOXA9_MEIS1:0.296226478131;EVI1:0.270951472043;POU6F1:0.247556028791;NR5A1,2:0.243796453367;STAT2,4,6:0.238233590246;NR6A1:0.232518641537;IRF7:0.231158103891;SPI1:0.220929588412;ETS1,2:0.219904106833;TLX2:0.211156608374;CREB1:0.174871876105;NFE2:0.145434640536;HOX{A6,A7,B6,B7}:0.133897923027;DMAP1_NCOR{1,2}_SMARC:0.0992898272534;PAX4:0.0942213268676;SOX{8,9,10}:0.0888496992637;RUNX1..3:0.0857653900827;IRF1,2:0.0766642723078;PRRX1,2:0.0611192969918;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000252489716184;SOX17:-0.00261315036452;ZNF384:-0.00462431040719;SRF:-0.00565600676448;PAX3,7:-0.0198136561867;AR:-0.0230369462568;NFIX:-0.0322733985702;LHX3,4:-0.0413208386908;CEBPA,B_DDIT3:-0.0714290476044;HES1:-0.0768695711394;PAX6:-0.0784287492252;NANOG{mouse}:-0.0854753490724;ARID5B:-0.0974725403214;HOX{A4,D4}:-0.103607473509;ADNP_IRX_SIX_ZHX:-0.11138369971;HNF4A_NR2F1,2:-0.112757861762;AHR_ARNT_ARNT2:-0.144159401941;ZFP161:-0.144584027155;FOXD3:-0.146557779173;ATF2:-0.150875461016;NKX2-3_NKX2-5:-0.168256412451;HOX{A5,B5}:-0.188734107341;HSF1,2:-0.190277582138;EP300:-0.200322589775;POU5F1:-0.228699783851;PDX1:-0.270255917947;GFI1:-0.272150903005;NHLH1,2:-0.27315880593;BACH2:-0.2737830145;TEF:-0.28334508169;FOXM1:-0.285844756775;FOSL2:-0.297588323784;FOX{F1,F2,J1}:-0.303059728041;SNAI1..3:-0.311274546038;HIC1:-0.323482360945;RREB1:-0.336387696152;NFKB1_REL_RELA:-0.341813622346;NFIL3:-0.373641089372;NANOG:-0.393170278473;ZNF238:-0.394621081492;RORA:-0.398008418564;FOXP3:-0.406497247982;ONECUT1,2:-0.406579249862;T:-0.425228025518;GATA4:-0.427882844738;PAX2:-0.429927721036;HLF:-0.449591066459;TBP:-0.461940638455;LEF1_TCF7_TCF7L1,2:-0.474099674523;NFE2L2:-0.476827912816;FOS_FOS{B,L1}_JUN{B,D}:-0.48432016808;GZF1:-0.484809748849;ZNF423:-0.496411994977;MED-1{core}:-0.496482960515;HBP1_HMGB_SSRP1_UBTF:-0.520949955955;SOX5:-0.526294526061;HNF1A:-0.528420943992;MTF1:-0.544330869207;FOXA2:-0.594657814471;PPARG:-0.598596932393;CDC5L:-0.599989947423;REST:-0.60129215751;RXR{A,B,G}:-0.603097987162;NFE2L1:-0.606509131845;ZEB1:-0.623609156721;GTF2I:-0.648070734537;KLF4:-0.660644746036;FOX{D1,D2}:-0.665950505476;ZBTB6:-0.670014673255;SREBF1,2:-0.680986352979;EGR1..3:-0.683622346493;XBP1:-0.687385583058;HAND1,2:-0.689696045389;GLI1..3:-0.693926233641;MYFfamily:-0.699716873721;UFEwm:-0.700355125746;VSX1,2:-0.701934468233;DBP:-0.705480216592;MZF1:-0.715226066332;RFX2..5_RFXANK_RFXAP:-0.719834910185;MEF2{A,B,C,D}:-0.721398404881;TFAP2B:-0.727023517069;TFAP2{A,C}:-0.739174770264;MAFB:-0.750046326914;BPTF:-0.753076664978;RXRA_VDR{dimer}:-0.755766692104;RFX1:-0.757812159613;NKX3-2:-0.781978817631;HMGA1,2:-0.793529283487;GCM1,2:-0.79746962649;SOX2:-0.84461503126;PATZ1:-0.84935854987;PAX1,9:-0.858544012554;GTF2A1,2:-0.862258444976;TLX1..3_NFIC{dimer}:-0.87379040625;TP53:-0.875802360501;NKX2-2,8:-0.905237847795;ZIC1..3:-0.90876598699;TGIF1:-0.913213775333;TFAP4:-0.91585843944;MYBL2:-0.928361554745;FOXO1,3,4:-0.93069378082;PAX5:-0.935068220585;SMAD1..7,9:-0.966042702013;SP1:-0.984163217869;MTE{core}:-0.989594663944;NFATC1..3:-1.01691008089;IKZF1:-1.03942263602;MAZ:-1.04061683184;JUN:-1.0475905735;TEAD1:-1.06467106713;SPZ1:-1.07572686675;PRDM1:-1.09051986091;ALX4:-1.12362593881;GFI1B:-1.12614066887;ESRRA:-1.14632887057;FOXL1:-1.16457314222;NR1H4:-1.17679970325;XCPE1{core}:-1.19430247901;TBX4,5:-1.22960202314;LMO2:-1.24058855518;ATF6:-1.3129251629;NR3C1:-1.36470808896;TAL1_TCF{3,4,12}:-1.44373926852;TFCP2:-1.5246259803;ESR1:-1.55853245783;HMX1:-1.89267619605;EBF1:-1.9138092093
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10752-110D5;search_select_hide=table117:FF:10752-110D5
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:leukemia, chronic megakaryoblastic cell line:MEG-01
Species:Human (Homo sapiens)
Library ID:CNhs11859
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age56
cell typemegakaryoblast
cell lineMEG-01
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004745
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11859 CAGE DRX007919 DRR008791
Accession ID Hg19

Library idBAMCTSS
CNhs11859 DRZ000216 DRZ001601
Accession ID Hg38

Library idBAMCTSS
CNhs11859 DRZ011566 DRZ012951
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004745
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10081 RNA-Seq DRX057138 DRR062897
Accession ID Hg19

Library idBAMCTSS
RDhi10081 DRZ007973


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.349
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.386
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0.732
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0343
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.149
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.066
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0343
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.025
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.265
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0343
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.138
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340.615
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.186
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0918
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0.066
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0902
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0343
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0343
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0343
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.349
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0343
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0343
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0171
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.066
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0.279
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11859

Jaspar motifP-value
MA0002.20.762
MA0003.10.443
MA0004.10.0319
MA0006.10.2
MA0007.10.943
MA0009.10.24
MA0014.10.833
MA0017.10.771
MA0018.20.278
MA0019.10.352
MA0024.10.00815
MA0025.10.643
MA0027.10.417
MA0028.11.73111e-9
MA0029.10.0099
MA0030.10.449
MA0031.10.0677
MA0035.22.66462e-18
MA0038.10.966
MA0039.20.721
MA0040.10.0719
MA0041.10.417
MA0042.10.663
MA0043.10.494
MA0046.10.182
MA0047.20.928
MA0048.10.0764
MA0050.13.42132e-5
MA0051.14.72871e-4
MA0052.10.0029
MA0055.10.00441
MA0057.10.59
MA0058.10.0183
MA0059.11.86635e-5
MA0060.11.10018e-13
MA0061.10.223
MA0062.21.05141e-15
MA0065.20.814
MA0066.10.216
MA0067.10.339
MA0068.10.603
MA0069.10.447
MA0070.10.3
MA0071.10.666
MA0072.10.972
MA0073.10.624
MA0074.10.177
MA0076.14.7427e-10
MA0077.10.206
MA0078.10.63
MA0079.20.963
MA0080.21.23392e-5
MA0081.10.0208
MA0083.10.288
MA0084.10.513
MA0087.10.0402
MA0088.12.20093e-4
MA0090.12.81848e-4
MA0091.10.369
MA0092.10.586
MA0093.10.0115
MA0099.20.126
MA0100.10.0077
MA0101.10.414
MA0102.20.0914
MA0103.10.557
MA0104.25.31435e-6
MA0105.10.149
MA0106.10.892
MA0107.10.0385
MA0108.20.215
MA0111.10.272
MA0112.20.477
MA0113.10.108
MA0114.10.829
MA0115.10.711
MA0116.10.106
MA0117.10.714
MA0119.10.849
MA0122.10.271
MA0124.10.721
MA0125.10.693
MA0131.10.122
MA0135.10.175
MA0136.12.02453e-9
MA0137.20.015
MA0138.20.242
MA0139.10.341
MA0140.19.71098e-31
MA0141.10.938
MA0142.10.87
MA0143.10.322
MA0144.10.743
MA0145.10.333
MA0146.10.587
MA0147.11.88464e-7
MA0148.10.477
MA0149.10.111
MA0150.10.446
MA0152.10.211
MA0153.10.0434
MA0154.10.367
MA0155.10.362
MA0156.11.74983e-9
MA0157.10.0368
MA0159.10.804
MA0160.10.729
MA0162.10.675
MA0163.12.3824e-4
MA0164.10.653
MA0258.10.951
MA0259.10.00605



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11859

Novel motifP-value
10.424
100.0395
1000.937
1010.189
1020.411
1030.686
1040.973
1050.484
1060.114
1070.172
1080.394
1090.234
110.394
1100.863
1110.0597
1120.926
1130.435
1140.527
1150.0173
1160.299
1170.0778
1180.193
1190.228
120.958
1200.357
1210.632
1220.86
1230.277
1240.68
1250.48
1260.239
1270.268
1280.096
1290.143
130.00192
1300.705
1310.547
1320.186
1330.172
1340.527
1350.0118
1360.0247
1370.817
1380.987
1390.153
140.504
1400.571
1410.284
1420.434
1430.442
1440.534
1450.363
1460.154
1470.213
1480.37
1490.00245
150.831
1500.826
1510.228
1520.111
1530.823
1540.829
1550.303
1560.678
1570.607
1580.727
1590.258
160.44
1600.637
1610.367
1620.862
1630.28
1640.926
1650.871
1660.177
1670.43
1680.386
1690.527
170.926
180.984
190.534
20.0258
200.0125
210.135
220.501
230.0019
240.279
250.521
260.289
270.0435
280.18
290.221
30.404
300.0094
310.399
320.0078
330.182
340.295
350.817
360.0389
370.302
380.972
390.211
40.0893
400.563
410.192
420.258
430.841
440.665
450.508
460.386
470.178
480.259
490.581
50.563
500.92
510.886
520.159
530.447
540.533
550.124
560.893
570.431
580.314
590.181
60.263
600.426
610.0645
620.779
630.803
640.648
650.263
663.18647e-7
670.478
680.208
690.675
70.276
700.794
710.114
720.848
730.965
740.228
750.00386
760.349
770.0424
780.038
790.0285
80.419
800.0127
810.509
820.254
830.402
840.986
850.357
860.919
870.123
880.453
890.131
90.35
900.134
910.145
920.314
930.925
940.878
950.0425
960.763
970.479
980.416
990.391



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11859


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0102581 (MEG-01 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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