FF:10770-110F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004999 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007812;DRR008684;DRZ000109;DRZ001494;DRZ011459;DRZ012844 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.18!151.83!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!2.14!553.73!CEBPA;;chr7:115670804..115670825,-!p1@TFEC!2.12!130.88!TFEC;;chr2:68592406..68592424,+!p1@PLEK!2.12!130.19!PLEK;;chr7:27192185..27192209,-!p1@HOXA3!1.94!86.91!HOXA3;;chr1:92949331..92949377,-!p2@GFI1!1.93!84.85!GFI1;;chr6:135502408..135502459,+!p2@MYB!1.91!92.75!MYB;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.72!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.88!74.88!CREB3L2;;chr6:135502501..135502546,+!p1@MYB!1.84!80.38!MYB;;chr7:50344289..50344323,+!p1@IKZF1!1.83!65.95!IKZF1;;chr7:27196217..27196246,-!p2@HOXA7!1.78!59.08!HOXA7;;chr1:92951607..92951661,-!p1@GFI1!1.75!55.65!GFI1;;chr7:27205136..27205164,-!p1@HOXA9!1.73!53.24!HOXA9;;chr7:137620650..137620677,-!p3@CREB3L2!1.72!51.18!CREB3L2;;chr1:92952473..92952489,-!p3@GFI1!1.63!41.56!GFI1;;chr19:13213662..13213686,-!p1@LYL1!1.60!55.99!LYL1;;chr7:27205106..27205134,-!p2@HOXA9!1.57!36.41!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.56!69.39!DACH1;;chr7:27213893..27213954,-!p1@HOXA10!1.56!35.72!HOXA10;;chr16:85936412..85936431,+!p2@IRF8!1.56!35.04!IRF8;;chr16:85935894..85935904,+!p9@IRF8!1.42!25.08!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.42!25.08!OLIG1;;chr14:75988771..75988826,+!p1@BATF!1.40!31.60!BATF;;chr13:72440901..72440968,-!p4@DACH1!1.40!24.39!DACH1;;chr12:54694807..54694832,-!p3@NFE2!1.39!23.70!NFE2;;chr11:120107344..120107351,+!p1@POU2F3!1.38!27.82!POU2F3;;chr7:27205043..27205050,-!p5@HOXA9!1.37!22.67!HOXA9;;chr10:31288398..31288455,-!p2@ZNF438!1.35!24.73!ZNF438;;chr12:54778471..54778528,-!p1@ZNF385A!1.35!21.30!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.23!100.99!ELF1;;chr13:72441074..72441172,-!p2@DACH1!1.23!15.80!DACH1;;chr21:34442540..34442560,+!p2@OLIG1!1.22!15.46!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.19!189.61!ZEB2;;chr2:66662249..66662267,+!p2@MEIS1!1.19!54.96!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!1.19!19.58!KLF7;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.80!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.19!14.43!SPI1;;chr3:128212033..128212051,-!p1@GATA2!1.17!13.74!GATA2;;chr6:144385698..144385742,-!p2@PLAGL1!1.16!16.49!PLAGL1;;chr11:47400062..47400077,-!p2@SPI1!1.16!13.40!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.15!20.61!IRF5;;chr19:12163769..12163798,-!p1@ZNF878!1.14!16.49!ZNF878;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.11!SATB1;;chr2:102091566..102091581,-!p1@RFX8!1.11!12.02!RFX8;;chr6:135502472..135502489,+!p3@MYB!1.11!12.02!MYB;;chr7:27183114..27183138,-!p3@HOXA5!1.11!12.02!HOXA5;;chr11:32457103..32457123,-!p3@WT1!1.09!11.34!WT1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.49!ZNF595;;chr19:12203100..12203132,+!p1@ZNF788!1.06!21.30!ZNF788;;chr16:54320646..54320672,-!p2@IRX3!1.03!15.11!IRX3;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.44!HHEX;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.05!ETV6;;chr5:88178983..88179012,-!p1@MEF2C!1.01!73.51!MEF2C;;chr1:92949505..92949543,-!p5@GFI1!1.01!9.27!GFI1;;chr6:135516877..135516900,+!p5@MYB!1.00!8.93!MYB;;chr7:27213872..27213886,-!p4@HOXA10!0.98!8.59!HOXA10;;chr19:45971246..45971265,+!p1@FOSB!0.97!158.01!FOSB;;chr11:32457075..32457095,-!p1@WT1!0.97!8.24!WT1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.24!PLEK;;chr6:135513595..135513617,+!p4@MYB!0.95!7.90!MYB;;chr11:47399947..47399961,-!p3@SPI1!0.95!7.90!SPI1;;chrX:147582130..147582147,+!p3@AFF2!0.95!7.90!AFF2;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.24!MXD3;;chr6:126240380..126240430,+!p2@NCOA7!0.94!20.61!NCOA7;;chr2:66662281..66662308,+!p1@MEIS1!0.93!26.79!MEIS1;;chr10:94449675..94449694,+!p2@HHEX!0.93!20.95!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.91!19.58!DLX2;;chr13:72440772..72440847,-!p5@DACH1!0.91!7.21!DACH1;;chr2:60780607..60780624,-!p2@BCL11A!0.90!21.98!BCL11A;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.46!IRX3;;chr14:75988831..75988847,+!p2@BATF!0.90!6.87!BATF;;chr16:54320617..54320643,-!p3@IRX3!0.89!8.93!IRX3;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.90!E2F8;;chr11:47400032..47400043,-!p5@SPI1!0.88!6.53!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.87!82.44!FLI1;;chr10:22292591..22292606,-!p2@DNAJC1!0.87!10.65!DNAJC1;;chr20:50159198..50159299,-!p1@NFATC2!0.87!9.62!NFATC2;;chr19:48774586..48774670,+!p1@ZNF114!0.86!7.90!ZNF114;;chr2:100759010..100759035,-!p1@AFF3!0.86!6.18!AFF3;;chr16:85936600..85936623,+!p4@IRF8!0.86!6.18!IRF8;;chrY:21906594..21906622,-!p1@KDM5D!0.86!6.18!KDM5D;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.51!NFATC3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.48!ETV4;;chr2:60780753..60780800,-!p1@BCL11A!0.84!31.26!BCL11A;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.62!EBF4;;chr7:115670792..115670797,-!p2@TFEC!0.84!5.84!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!0.84!5.84!IKZF1;;chr19:13213954..13214021,-!p4@LYL1!0.84!5.84!LYL1;;chr1:156470515..156470542,-!p2@MEF2D!0.83!32.29!MEF2D;;chr19:20011744..20011770,+!p1@ZNF93!0.82!23.36!ZNF93;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.30!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!0.81!6.18!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.80!6.87!NCOA7;;chr7:27196196..27196210,-!p5@HOXA7!0.79!5.15!HOXA7;;chr7:27205066..27205067,-!p7@HOXA9!0.79!5.15!HOXA9;;chr7:50344251..50344288,+!p3@IKZF1!0.79!5.15!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!0.79!5.15!SPI1;;chr12:54694653..54694672,-!p2@NFE2!0.79!5.15!NFE2;;chr2:100759037..100759058,-!p2@AFF3!0.79!5.15!AFF3;;chr13:114238997..114239077,+!p1@TFDP1!0.78!275.49!TFDP1;;chr17:45810594..45810608,+!p1@TBX21!0.76!4.81!TBX21;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.81!ZFY;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.55!BRCA1;;chrX:101186981..101187030,-!p1@ZMAT1!0.74!16.14!ZMAT1;;chr10:31288370..31288393,-!p3@ZNF438!0.74!4.47!ZNF438;;chr11:19262421..19262455,-!p3@E2F8!0.74!4.47!E2F8;;chr11:19262461..19262476,-!p5@E2F8!0.74!4.47!E2F8;;chr6:135516909..135516925,+!p6@MYB!0.74!4.47!MYB;;chr21:36260980..36261011,-!p1@RUNX1!0.73!141.18!RUNX1;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.38!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.73!19.58!E2F3;;chr7:150974206..150974255,-!p1@SMARCD3!0.71!28.85!SMARCD3;;chr7:64838786..64838809,+!p2@ZNF92!0.71!26.11!ZNF92;;chr2:60781201..60781258,-!p3@BCL11A!0.71!4.12!BCL11A;;chr3:27763807..27763822,-!p1@EOMES!0.71!4.12!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!0.71!4.12!ATXN7;;chr7:101459230..101459243,+!p2@CUX1!0.69!21.64!CUX1;;chr2:43454125..43454146,-!p2@ZFP36L2!0.68!3.78!ZFP36L2;;chr11:32456894..32456906,-!p8@WT1!0.68!3.78!WT1;;chr19:58740449..58740456,+!p3@ZNF544!0.68!3.78!ZNF544;;chr7:99070499..99070523,+!p1@ZNF789!0.67!22.33!ZNF789;;chr5:88179017..88179046,-!p2@MEF2C!0.67!16.83!MEF2C;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.84!ETV4;;chr11:19263192..19263222,-!p2@E2F8!0.66!4.47!E2F8;;chr1:40105299..40105326,-!p1@HEYL!0.65!3.44!HEYL;;chr21:36421147..36421193,-!p10@RUNX1!0.65!3.44!RUNX1;;chr21:36421518..36421532,-!p11@RUNX1!0.65!3.44!RUNX1;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr16:54320322..54320343,-!p7@IRX3!0.65!3.44!IRX3;;chr16:85936539..85936562,+!p3@IRF8!0.65!3.44!IRF8;;chr7:27205089..27205096,-!p4@HOXA9!0.65!3.44!HOXA9;;chr12:11802600..11802685,+!p1@ETV6!0.64!59.77!ETV6;;chr14:55493763..55493824,-!p1@WDHD1!0.64!29.88!WDHD1;;chr9:117160738..117160782,-!p2@AKNA!0.64!16.14!AKNA;;chr2:169312600..169312606,+!p2@CERS6!0.63!5.50!CERS6;;chr2:8822176..8822196,+!p1@ID2!0.62!537.24!ID2;;chr4:87928142..87928165,+!p5@AFF1!0.62!12.71!AFF1;;chr15:57511609..57511651,+!p2@TCF12!0.62!5.84!TCF12;;chr6:44355325..44355340,+!p4@CDC5L!0.62!3.78!CDC5L;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.38!MBD4;;chr3:71630980..71631110,-!p3@FOXP1!0.61!12.37!FOXP1;;chr2:145277882..145277967,-!p3@ZEB2!0.61!5.84!ZEB2;;chr10:48355030..48355090,+!p1@ZNF488!0.61!4.12!ZNF488;;chr1:67390715..67390733,+!p7@MIER1!0.61!4.12!MIER1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.09!NFE2;;chr7:27183263..27183284,-!p2@HOXA5!0.61!3.09!HOXA5;;chr17:48046543..48046575,+!p2@DLX4!0.61!3.09!DLX4;;chr14:45722360..45722415,-!p1@MIS18BP1!0.60!56.68!MIS18BP1;;chr12:2986275..2986363,-!p1@FOXM1!0.60!36.41!FOXM1;;chr7:99156145..99156207,+!p5@ZNF655!0.60!11.68!ZNF655;;chr1:59249645..59249656,-!p4@JUN!0.60!8.59!JUN;;chr13:45011349..45011391,-!p4@TSC22D1!0.60!8.24!TSC22D1;;chr7:99156393..99156433,+!p6@ZNF655!0.60!7.56!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.59!14.08!MBNL3;;chr19:926055..926068,+!p2@ARID3A!0.59!7.21!ARID3A;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.84!E2F2;;chr19:50168861..50168873,-!p3@IRF3!0.59!5.50!IRF3;;chr6:45390002..45390023,+!p6@RUNX2!0.59!5.50!RUNX2;;chr1:25256756..25256774,-!p1@RUNX3!0.58!5.84!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.58!4.47!MAFG;;chr4:26321361..26321377,+!p6@RBPJ!0.58!3.78!RBPJ;;chrX:131622958..131622978,-!p3@MBNL3!0.58!3.78!MBNL3;;chr12:69753448..69753577,+!p1@YEATS4!0.57!66.98!YEATS4;;chr10:97889784..97889827,+!p1@ZNF518A!0.57!16.14!ZNF518A;;chr19:20011775..20011800,+!p2@ZNF93!0.57!5.50!ZNF93;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.44!BCL11A;;chr2:113977697..113977733,-!p6@PAX8!0.57!2.75!PAX8;;chr2:145277589..145277612,-!p12@ZEB2!0.57!2.75!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.75!KDM5D;;chr16:54320280..54320291,-!p9@IRX3!0.57!2.75!IRX3;;chr19:13213555..13213568,-!p5@LYL1!0.57!2.75!LYL1;;chr19:33864740..33864747,+!p4@CEBPG!0.57!2.75!CEBPG;;chr1:25291475..25291511,-!p2@RUNX3!0.57!2.75!RUNX3;;chr1:40105347..40105358,-!p2@HEYL!0.57!2.75!HEYL;;chr10:22292613..22292674,-!p1@DNAJC1!0.56!96.87!DNAJC1;;chr7:64126503..64126528,+!p1@ZNF107!0.56!23.01!ZNF107;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.12!MBNL3;;chr19:21950362..21950388,-!p1@ZNF100!0.55!28.85!ZNF100;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.55!20.27!ZNF700;;chr16:68118689..68118733,+!p3@NFATC3!0.55!7.56!NFATC3;;chr11:61520075..61520136,+!p1@C11orf9!0.55!6.18!C11orf9;;chr5:88179195..88179224,-!p3@MEF2C!0.55!4.47!MEF2C;;chr19:53039233..53039247,+!p2@ZNF808!0.55!4.12!ZNF808;;chr2:43453734..43453751,-!p1@ZFP36L2!0.54!339.38!ZFP36L2;;chr13:46542074..46542106,-!p6@ZC3H13!0.54!3.44!ZC3H13;;chr19:45579725..45579743,-!p1@ZNF296!0.53!13.40!ZNF296;;chr7:149470641..149470694,-!p1@ZNF467!0.53!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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.18!151.83!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!2.14!553.73!CEBPA;;chr7:115670804..115670825,-!p1@TFEC!2.12!130.88!TFEC;;chr2:68592406..68592424,+!p1@PLEK!2.12!130.19!PLEK;;chr7:27192185..27192209,-!p1@HOXA3!1.94!86.91!HOXA3;;chr1:92949331..92949377,-!p2@GFI1!1.93!84.85!GFI1;;chr6:135502408..135502459,+!p2@MYB!1.91!92.75!MYB;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.72!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.88!74.88!CREB3L2;;chr6:135502501..135502546,+!p1@MYB!1.84!80.38!MYB;;chr7:50344289..50344323,+!p1@IKZF1!1.83!65.95!IKZF1;;chr7:27196217..27196246,-!p2@HOXA7!1.78!59.08!HOXA7;;chr1:92951607..92951661,-!p1@GFI1!1.75!55.65!GFI1;;chr7:27205136..27205164,-!p1@HOXA9!1.73!53.24!HOXA9;;chr7:137620650..137620677,-!p3@CREB3L2!1.72!51.18!CREB3L2;;chr1:92952473..92952489,-!p3@GFI1!1.63!41.56!GFI1;;chr19:13213662..13213686,-!p1@LYL1!1.60!55.99!LYL1;;chr7:27205106..27205134,-!p2@HOXA9!1.57!36.41!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.56!69.39!DACH1;;chr7:27213893..27213954,-!p1@HOXA10!1.56!35.72!HOXA10;;chr16:85936412..85936431,+!p2@IRF8!1.56!35.04!IRF8;;chr16:85935894..85935904,+!p9@IRF8!1.42!25.08!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.42!25.08!OLIG1;;chr14:75988771..75988826,+!p1@BATF!1.40!31.60!BATF;;chr13:72440901..72440968,-!p4@DACH1!1.40!24.39!DACH1;;chr12:54694807..54694832,-!p3@NFE2!1.39!23.70!NFE2;;chr11:120107344..120107351,+!p1@POU2F3!1.38!27.82!POU2F3;;chr7:27205043..27205050,-!p5@HOXA9!1.37!22.67!HOXA9;;chr10:31288398..31288455,-!p2@ZNF438!1.35!24.73!ZNF438;;chr12:54778471..54778528,-!p1@ZNF385A!1.35!21.30!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.23!100.99!ELF1;;chr13:72441074..72441172,-!p2@DACH1!1.23!15.80!DACH1;;chr21:34442540..34442560,+!p2@OLIG1!1.22!15.46!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.19!189.61!ZEB2;;chr2:66662249..66662267,+!p2@MEIS1!1.19!54.96!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!1.19!19.58!KLF7;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.80!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.19!14.43!SPI1;;chr3:128212033..128212051,-!p1@GATA2!1.17!13.74!GATA2;;chr6:144385698..144385742,-!p2@PLAGL1!1.16!16.49!PLAGL1;;chr11:47400062..47400077,-!p2@SPI1!1.16!13.40!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.15!20.61!IRF5;;chr19:12163769..12163798,-!p1@ZNF878!1.14!16.49!ZNF878;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.11!SATB1;;chr2:102091566..102091581,-!p1@RFX8!1.11!12.02!RFX8;;chr6:135502472..135502489,+!p3@MYB!1.11!12.02!MYB;;chr7:27183114..27183138,-!p3@HOXA5!1.11!12.02!HOXA5;;chr11:32457103..32457123,-!p3@WT1!1.09!11.34!WT1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.49!ZNF595;;chr19:12203100..12203132,+!p1@ZNF788!1.06!21.30!ZNF788;;chr16:54320646..54320672,-!p2@IRX3!1.03!15.11!IRX3;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.44!HHEX;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.05!ETV6;;chr5:88178983..88179012,-!p1@MEF2C!1.01!73.51!MEF2C;;chr1:92949505..92949543,-!p5@GFI1!1.01!9.27!GFI1;;chr6:135516877..135516900,+!p5@MYB!1.00!8.93!MYB;;chr7:27213872..27213886,-!p4@HOXA10!0.98!8.59!HOXA10;;chr19:45971246..45971265,+!p1@FOSB!0.97!158.01!FOSB;;chr11:32457075..32457095,-!p1@WT1!0.97!8.24!WT1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.24!PLEK;;chr6:135513595..135513617,+!p4@MYB!0.95!7.90!MYB;;chr11:47399947..47399961,-!p3@SPI1!0.95!7.90!SPI1;;chrX:147582130..147582147,+!p3@AFF2!0.95!7.90!AFF2;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.24!MXD3;;chr6:126240380..126240430,+!p2@NCOA7!0.94!20.61!NCOA7;;chr2:66662281..66662308,+!p1@MEIS1!0.93!26.79!MEIS1;;chr10:94449675..94449694,+!p2@HHEX!0.93!20.95!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.91!19.58!DLX2;;chr13:72440772..72440847,-!p5@DACH1!0.91!7.21!DACH1;;chr2:60780607..60780624,-!p2@BCL11A!0.90!21.98!BCL11A;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.46!IRX3;;chr14:75988831..75988847,+!p2@BATF!0.90!6.87!BATF;;chr16:54320617..54320643,-!p3@IRX3!0.89!8.93!IRX3;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.90!E2F8;;chr11:47400032..47400043,-!p5@SPI1!0.88!6.53!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.87!82.44!FLI1;;chr10:22292591..22292606,-!p2@DNAJC1!0.87!10.65!DNAJC1;;chr20:50159198..50159299,-!p1@NFATC2!0.87!9.62!NFATC2;;chr19:48774586..48774670,+!p1@ZNF114!0.86!7.90!ZNF114;;chr2:100759010..100759035,-!p1@AFF3!0.86!6.18!AFF3;;chr16:85936600..85936623,+!p4@IRF8!0.86!6.18!IRF8;;chrY:21906594..21906622,-!p1@KDM5D!0.86!6.18!KDM5D;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.51!NFATC3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.48!ETV4;;chr2:60780753..60780800,-!p1@BCL11A!0.84!31.26!BCL11A;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.62!EBF4;;chr7:115670792..115670797,-!p2@TFEC!0.84!5.84!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!0.84!5.84!IKZF1;;chr19:13213954..13214021,-!p4@LYL1!0.84!5.84!LYL1;;chr1:156470515..156470542,-!p2@MEF2D!0.83!32.29!MEF2D;;chr19:20011744..20011770,+!p1@ZNF93!0.82!23.36!ZNF93;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.30!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!0.81!6.18!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.80!6.87!NCOA7;;chr7:27196196..27196210,-!p5@HOXA7!0.79!5.15!HOXA7;;chr7:27205066..27205067,-!p7@HOXA9!0.79!5.15!HOXA9;;chr7:50344251..50344288,+!p3@IKZF1!0.79!5.15!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!0.79!5.15!SPI1;;chr12:54694653..54694672,-!p2@NFE2!0.79!5.15!NFE2;;chr2:100759037..100759058,-!p2@AFF3!0.79!5.15!AFF3;;chr13:114238997..114239077,+!p1@TFDP1!0.78!275.49!TFDP1;;chr17:45810594..45810608,+!p1@TBX21!0.76!4.81!TBX21;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.81!ZFY;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.55!BRCA1;;chrX:101186981..101187030,-!p1@ZMAT1!0.74!16.14!ZMAT1;;chr10:31288370..31288393,-!p3@ZNF438!0.74!4.47!ZNF438;;chr11:19262421..19262455,-!p3@E2F8!0.74!4.47!E2F8;;chr11:19262461..19262476,-!p5@E2F8!0.74!4.47!E2F8;;chr6:135516909..135516925,+!p6@MYB!0.74!4.47!MYB;;chr21:36260980..36261011,-!p1@RUNX1!0.73!141.18!RUNX1;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.38!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.73!19.58!E2F3;;chr7:150974206..150974255,-!p1@SMARCD3!0.71!28.85!SMARCD3;;chr7:64838786..64838809,+!p2@ZNF92!0.71!26.11!ZNF92;;chr2:60781201..60781258,-!p3@BCL11A!0.71!4.12!BCL11A;;chr3:27763807..27763822,-!p1@EOMES!0.71!4.12!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!0.71!4.12!ATXN7;;chr7:101459230..101459243,+!p2@CUX1!0.69!21.64!CUX1;;chr2:43454125..43454146,-!p2@ZFP36L2!0.68!3.78!ZFP36L2;;chr11:32456894..32456906,-!p8@WT1!0.68!3.78!WT1;;chr19:58740449..58740456,+!p3@ZNF544!0.68!3.78!ZNF544;;chr7:99070499..99070523,+!p1@ZNF789!0.67!22.33!ZNF789;;chr5:88179017..88179046,-!p2@MEF2C!0.67!16.83!MEF2C;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.84!ETV4;;chr11:19263192..19263222,-!p2@E2F8!0.66!4.47!E2F8;;chr1:40105299..40105326,-!p1@HEYL!0.65!3.44!HEYL;;chr21:36421147..36421193,-!p10@RUNX1!0.65!3.44!RUNX1;;chr21:36421518..36421532,-!p11@RUNX1!0.65!3.44!RUNX1;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr16:54320322..54320343,-!p7@IRX3!0.65!3.44!IRX3;;chr16:85936539..85936562,+!p3@IRF8!0.65!3.44!IRF8;;chr7:27205089..27205096,-!p4@HOXA9!0.65!3.44!HOXA9;;chr12:11802600..11802685,+!p1@ETV6!0.64!59.77!ETV6;;chr14:55493763..55493824,-!p1@WDHD1!0.64!29.88!WDHD1;;chr9:117160738..117160782,-!p2@AKNA!0.64!16.14!AKNA;;chr2:169312600..169312606,+!p2@CERS6!0.63!5.50!CERS6;;chr2:8822176..8822196,+!p1@ID2!0.62!537.24!ID2;;chr4:87928142..87928165,+!p5@AFF1!0.62!12.71!AFF1;;chr15:57511609..57511651,+!p2@TCF12!0.62!5.84!TCF12;;chr6:44355325..44355340,+!p4@CDC5L!0.62!3.78!CDC5L;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.38!MBD4;;chr3:71630980..71631110,-!p3@FOXP1!0.61!12.37!FOXP1;;chr2:145277882..145277967,-!p3@ZEB2!0.61!5.84!ZEB2;;chr10:48355030..48355090,+!p1@ZNF488!0.61!4.12!ZNF488;;chr1:67390715..67390733,+!p7@MIER1!0.61!4.12!MIER1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.09!NFE2;;chr7:27183263..27183284,-!p2@HOXA5!0.61!3.09!HOXA5;;chr17:48046543..48046575,+!p2@DLX4!0.61!3.09!DLX4;;chr14:45722360..45722415,-!p1@MIS18BP1!0.60!56.68!MIS18BP1;;chr12:2986275..2986363,-!p1@FOXM1!0.60!36.41!FOXM1;;chr7:99156145..99156207,+!p5@ZNF655!0.60!11.68!ZNF655;;chr1:59249645..59249656,-!p4@JUN!0.60!8.59!JUN;;chr13:45011349..45011391,-!p4@TSC22D1!0.60!8.24!TSC22D1;;chr7:99156393..99156433,+!p6@ZNF655!0.60!7.56!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.59!14.08!MBNL3;;chr19:926055..926068,+!p2@ARID3A!0.59!7.21!ARID3A;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.84!E2F2;;chr19:50168861..50168873,-!p3@IRF3!0.59!5.50!IRF3;;chr6:45390002..45390023,+!p6@RUNX2!0.59!5.50!RUNX2;;chr1:25256756..25256774,-!p1@RUNX3!0.58!5.84!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.58!4.47!MAFG;;chr4:26321361..26321377,+!p6@RBPJ!0.58!3.78!RBPJ;;chrX:131622958..131622978,-!p3@MBNL3!0.58!3.78!MBNL3;;chr12:69753448..69753577,+!p1@YEATS4!0.57!66.98!YEATS4;;chr10:97889784..97889827,+!p1@ZNF518A!0.57!16.14!ZNF518A;;chr19:20011775..20011800,+!p2@ZNF93!0.57!5.50!ZNF93;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.44!BCL11A;;chr2:113977697..113977733,-!p6@PAX8!0.57!2.75!PAX8;;chr2:145277589..145277612,-!p12@ZEB2!0.57!2.75!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.75!KDM5D;;chr16:54320280..54320291,-!p9@IRX3!0.57!2.75!IRX3;;chr19:13213555..13213568,-!p5@LYL1!0.57!2.75!LYL1;;chr19:33864740..33864747,+!p4@CEBPG!0.57!2.75!CEBPG;;chr1:25291475..25291511,-!p2@RUNX3!0.57!2.75!RUNX3;;chr1:40105347..40105358,-!p2@HEYL!0.57!2.75!HEYL;;chr10:22292613..22292674,-!p1@DNAJC1!0.56!96.87!DNAJC1;;chr7:64126503..64126528,+!p1@ZNF107!0.56!23.01!ZNF107;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.12!MBNL3;;chr19:21950362..21950388,-!p1@ZNF100!0.55!28.85!ZNF100;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.55!20.27!ZNF700;;chr16:68118689..68118733,+!p3@NFATC3!0.55!7.56!NFATC3;;chr11:61520075..61520136,+!p1@C11orf9!0.55!6.18!C11orf9;;chr5:88179195..88179224,-!p3@MEF2C!0.55!4.47!MEF2C;;chr19:53039233..53039247,+!p2@ZNF808!0.55!4.12!ZNF808;;chr2:43453734..43453751,-!p1@ZFP36L2!0.54!339.38!ZFP36L2;;chr13:46542074..46542106,-!p6@ZC3H13!0.54!3.44!ZC3H13;;chr19:45579725..45579743,-!p1@ZNF296!0.53!13.40!ZNF296;;chr7:149470641..149470694,-!p1@ZNF467!0.53!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| ||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10770-110F5 | |id=FF:10770-110F5 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101883 | |is_a=EFO:0002091;;FF:0000210;;FF:0101883 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13051 | |||
|library_id_phase_based=2:CNhs13051 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10770 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10770 | |||
|name=acute myeloid leukemia (FAB M5) cell line:P31/FUJ | |name=acute myeloid leukemia (FAB M5) cell line:P31/FUJ | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13051,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13051,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0320786315960833,0.307606423309587,0.0900977146760695,0.801416183578698,0,0,0,0,0,0,0,0,0,0,0.227117834445179,0,0,-0.153323010348428,0,0,0,0.368817709851813,0,0.513929765111984,0,0,0.816463812970126,0,0,0,0,0,0,0,0,0,0,0,0,0.200174237575766,0.307606423309587,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.038925074000699,0,0.210614062066982,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128239398490303,0,0,0,0,0,0,0,0,0,0,-0.42433225077747,0.0641196992451515,0,0,0.0192473103647989,0.139824564908696,0.0641196992451515,0,0,0,0.0302040472525964,0.551239626639283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.227117834445179,0,0,0.067237981509817,0.198734633081111,0,0,0.201919414118729,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 78: | ||
|rna_weight_ug=16.37523 | |rna_weight_ug=16.37523 | ||
|sample_age=7 | |sample_age=7 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0091 | |sample_cell_catalog=jcrb0091 | ||
|sample_cell_line=P31/FUJ | |sample_cell_line=P31/FUJ | ||
| Line 80: | Line 100: | ||
|top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:1.97993188826;MYB:1.55211658341;E2F1..5:1.26971023429;POU2F1..3:1.23776527687;NFY{A,B,C}:1.08106953958;NR5A1,2:1.05300870133;NKX2-2,8:1.03549637705;FOXD3:1.01001212279;SPIB:0.974096796944;YY1:0.920789447989;HAND1,2:0.902845465398;PDX1:0.895113458572;IKZF2:0.831562563478;DMAP1_NCOR{1,2}_SMARC:0.781540637504;SPI1:0.735541199009;POU1F1:0.714841372003;TEF:0.67407210292;PAX4:0.629140577623;RUNX1..3:0.62735951121;CRX:0.625067780384;GATA6:0.601580120307;PAX8:0.595493749894;XBP1:0.579038770723;ETS1,2:0.574977503254;ELF1,2,4:0.485506938946;GFI1:0.482052791897;HBP1_HMGB_SSRP1_UBTF:0.417825851761;NFIL3:0.396410170396;VSX1,2:0.395466028299;GCM1,2:0.386314435364;MYOD1:0.383066578335;CEBPA,B_DDIT3:0.369038594684;ZNF143:0.366619898631;RXRA_VDR{dimer}:0.362525818346;CUX2:0.35520531046;ALX1:0.342141410574;BREu{core}:0.327096448723;FOXQ1:0.312145319113;PAX3,7:0.309535918484;ZBTB16:0.289554988778;IRF7:0.278265334367;AIRE:0.278051090314;NFE2L1:0.272870762664;GZF1:0.232436226911;FOXP3:0.22762635912;NR6A1:0.221627482126;ONECUT1,2:0.219157037284;ZNF148:0.21807500616;POU5F1:0.172096262081;EN1,2:0.155445844216;FOXP1:0.14845594849;NFIX:0.141255733669;NRF1:0.134876248205;ELK1,4_GABP{A,B1}:0.132614367614;PRRX1,2:0.128067469119;NANOG{mouse}:0.123618810341;OCT4_SOX2{dimer}:0.117602707045;IRF1,2:0.116988049397;SOX17:0.115121793571;NFE2L2:0.0637341531402;TLX2:0.040429372459;MYFfamily:0.0379009483299;HOXA9_MEIS1:0.0334639876677;ARID5B:0.0318818944356;POU6F1:0.0252708163395;TFDP1:0.00789671728956;NKX2-3_NKX2-5:0.00334105155237;ESR1:-0.00923845285213;HOX{A5,B5}:-0.0255517051198;HOX{A6,A7,B6,B7}:-0.0414027926333;NKX3-1:-0.0490896079683;REST:-0.0703647804507;HLF:-0.0740689643649;NKX3-2:-0.0749478736402;CDX1,2,4:-0.0930501847753;GATA4:-0.104871955549;HMX1:-0.110772336405;T:-0.113386366191;MYBL2:-0.114552721589;FOX{I1,J2}:-0.130588036247;PAX5:-0.134254890431;ZNF238:-0.155329169726;ATF5_CREB3:-0.158223769359;TOPORS:-0.159479855284;PRDM1:-0.166049862953;PAX2:-0.170054656467;SPZ1:-0.176664492743;FOXA2:-0.189956400467;PITX1..3:-0.194399048542;HNF1A:-0.212477561825;NFKB1_REL_RELA:-0.215271808612;NANOG:-0.215370265638;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.226761960391;DBP:-0.231123738313;HNF4A_NR2F1,2:-0.255411038812;TGIF1:-0.265109155624;ESRRA:-0.273064263491;ZEB1:-0.276616732012;SREBF1,2:-0.282536027395;SOX{8,9,10}:-0.300802524203;FOSL2:-0.327957972523;NFE2:-0.330350562746;NKX2-1,4:-0.338984506932;IKZF1:-0.33932046835;RFX2..5_RFXANK_RFXAP:-0.340285794656;KLF4:-0.371693407425;LHX3,4:-0.371991507025;STAT5{A,B}:-0.380273179952;bHLH_family:-0.396616848402;UFEwm:-0.400605490451;SNAI1..3:-0.406262438811;NKX6-1,2:-0.421771687967;MEF2{A,B,C,D}:-0.428321020749;ZBTB6:-0.444219740311;HOX{A4,D4}:-0.453489375655;FOX{F1,F2,J1}:-0.467090045747;AR:-0.474124624245;TAL1_TCF{3,4,12}:-0.478376017941;SRF:-0.483718960206;POU3F1..4:-0.490317523921;FOS_FOS{B,L1}_JUN{B,D}:-0.490464232278;HES1:-0.492893135628;MTE{core}:-0.498050764357;TBP:-0.52194341998;PBX1:-0.564175513382;EVI1:-0.56642221374;BACH2:-0.571094546601;PPARG:-0.577956774673;ZFP161:-0.592254521616;MTF1:-0.604660659424;CREB1:-0.614786714613;STAT1,3:-0.634185821956;ZIC1..3:-0.638961593842;RXR{A,B,G}:-0.665177767107;FOXM1:-0.67038471653;FOXN1:-0.6705125265;BPTF:-0.678158324999;ATF4:-0.715143664306;NHLH1,2:-0.716842008473;SMAD1..7,9:-0.71755259587;HIF1A:-0.718802485578;EBF1:-0.733097267621;RFX1:-0.768046656869;ZNF384:-0.773057661274;TFAP2{A,C}:-0.801616610568;ATF2:-0.830880497926;RREB1:-0.848917981628;RORA:-0.849756521879;GFI1B:-0.854829128779;RBPJ:-0.87854373107;MZF1:-0.884665623825;HSF1,2:-0.891521475115;HMGA1,2:-0.930407766559;EP300:-0.932768184131;FOXO1,3,4:-0.951557282711;CDC5L:-0.96153663381;PAX6:-0.97584470063;MED-1{core}:-0.979397445426;ATF6:-0.991999110521;LMO2:-0.992384465053;STAT2,4,6:-0.997345290352;GTF2A1,2:-1.02908250296;SOX5:-1.03406204491;GLI1..3:-1.04033475516;AHR_ARNT_ARNT2:-1.04048796735;LEF1_TCF7_TCF7L1,2:-1.04973715557;NFATC1..3:-1.05169378185;TLX1..3_NFIC{dimer}:-1.05238349561;SP1:-1.0552753093;TFAP4:-1.05739216412;NR1H4:-1.07764770091;TFCP2:-1.09354262319;TP53:-1.1009394542;ALX4:-1.1286686632;GTF2I:-1.12868820784;MAZ:-1.16349157944;SOX2:-1.16928236553;ADNP_IRX_SIX_ZHX:-1.18483681707;NR3C1:-1.22235756638;HIC1:-1.23631463406;ZNF423:-1.25314747601;MAFB:-1.29245236698;TEAD1:-1.33360394602;FOX{D1,D2}:-1.39365382529;FOXL1:-1.40399191447;PAX1,9:-1.44569820634;EGR1..3:-1.46498473874;TBX4,5:-1.47420240703;XCPE1{core}:-1.57023407034;JUN:-1.57489494425;TFAP2B:-1.60125443674;PATZ1:-1.62593347455 | |top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:1.97993188826;MYB:1.55211658341;E2F1..5:1.26971023429;POU2F1..3:1.23776527687;NFY{A,B,C}:1.08106953958;NR5A1,2:1.05300870133;NKX2-2,8:1.03549637705;FOXD3:1.01001212279;SPIB:0.974096796944;YY1:0.920789447989;HAND1,2:0.902845465398;PDX1:0.895113458572;IKZF2:0.831562563478;DMAP1_NCOR{1,2}_SMARC:0.781540637504;SPI1:0.735541199009;POU1F1:0.714841372003;TEF:0.67407210292;PAX4:0.629140577623;RUNX1..3:0.62735951121;CRX:0.625067780384;GATA6:0.601580120307;PAX8:0.595493749894;XBP1:0.579038770723;ETS1,2:0.574977503254;ELF1,2,4:0.485506938946;GFI1:0.482052791897;HBP1_HMGB_SSRP1_UBTF:0.417825851761;NFIL3:0.396410170396;VSX1,2:0.395466028299;GCM1,2:0.386314435364;MYOD1:0.383066578335;CEBPA,B_DDIT3:0.369038594684;ZNF143:0.366619898631;RXRA_VDR{dimer}:0.362525818346;CUX2:0.35520531046;ALX1:0.342141410574;BREu{core}:0.327096448723;FOXQ1:0.312145319113;PAX3,7:0.309535918484;ZBTB16:0.289554988778;IRF7:0.278265334367;AIRE:0.278051090314;NFE2L1:0.272870762664;GZF1:0.232436226911;FOXP3:0.22762635912;NR6A1:0.221627482126;ONECUT1,2:0.219157037284;ZNF148:0.21807500616;POU5F1:0.172096262081;EN1,2:0.155445844216;FOXP1:0.14845594849;NFIX:0.141255733669;NRF1:0.134876248205;ELK1,4_GABP{A,B1}:0.132614367614;PRRX1,2:0.128067469119;NANOG{mouse}:0.123618810341;OCT4_SOX2{dimer}:0.117602707045;IRF1,2:0.116988049397;SOX17:0.115121793571;NFE2L2:0.0637341531402;TLX2:0.040429372459;MYFfamily:0.0379009483299;HOXA9_MEIS1:0.0334639876677;ARID5B:0.0318818944356;POU6F1:0.0252708163395;TFDP1:0.00789671728956;NKX2-3_NKX2-5:0.00334105155237;ESR1:-0.00923845285213;HOX{A5,B5}:-0.0255517051198;HOX{A6,A7,B6,B7}:-0.0414027926333;NKX3-1:-0.0490896079683;REST:-0.0703647804507;HLF:-0.0740689643649;NKX3-2:-0.0749478736402;CDX1,2,4:-0.0930501847753;GATA4:-0.104871955549;HMX1:-0.110772336405;T:-0.113386366191;MYBL2:-0.114552721589;FOX{I1,J2}:-0.130588036247;PAX5:-0.134254890431;ZNF238:-0.155329169726;ATF5_CREB3:-0.158223769359;TOPORS:-0.159479855284;PRDM1:-0.166049862953;PAX2:-0.170054656467;SPZ1:-0.176664492743;FOXA2:-0.189956400467;PITX1..3:-0.194399048542;HNF1A:-0.212477561825;NFKB1_REL_RELA:-0.215271808612;NANOG:-0.215370265638;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.226761960391;DBP:-0.231123738313;HNF4A_NR2F1,2:-0.255411038812;TGIF1:-0.265109155624;ESRRA:-0.273064263491;ZEB1:-0.276616732012;SREBF1,2:-0.282536027395;SOX{8,9,10}:-0.300802524203;FOSL2:-0.327957972523;NFE2:-0.330350562746;NKX2-1,4:-0.338984506932;IKZF1:-0.33932046835;RFX2..5_RFXANK_RFXAP:-0.340285794656;KLF4:-0.371693407425;LHX3,4:-0.371991507025;STAT5{A,B}:-0.380273179952;bHLH_family:-0.396616848402;UFEwm:-0.400605490451;SNAI1..3:-0.406262438811;NKX6-1,2:-0.421771687967;MEF2{A,B,C,D}:-0.428321020749;ZBTB6:-0.444219740311;HOX{A4,D4}:-0.453489375655;FOX{F1,F2,J1}:-0.467090045747;AR:-0.474124624245;TAL1_TCF{3,4,12}:-0.478376017941;SRF:-0.483718960206;POU3F1..4:-0.490317523921;FOS_FOS{B,L1}_JUN{B,D}:-0.490464232278;HES1:-0.492893135628;MTE{core}:-0.498050764357;TBP:-0.52194341998;PBX1:-0.564175513382;EVI1:-0.56642221374;BACH2:-0.571094546601;PPARG:-0.577956774673;ZFP161:-0.592254521616;MTF1:-0.604660659424;CREB1:-0.614786714613;STAT1,3:-0.634185821956;ZIC1..3:-0.638961593842;RXR{A,B,G}:-0.665177767107;FOXM1:-0.67038471653;FOXN1:-0.6705125265;BPTF:-0.678158324999;ATF4:-0.715143664306;NHLH1,2:-0.716842008473;SMAD1..7,9:-0.71755259587;HIF1A:-0.718802485578;EBF1:-0.733097267621;RFX1:-0.768046656869;ZNF384:-0.773057661274;TFAP2{A,C}:-0.801616610568;ATF2:-0.830880497926;RREB1:-0.848917981628;RORA:-0.849756521879;GFI1B:-0.854829128779;RBPJ:-0.87854373107;MZF1:-0.884665623825;HSF1,2:-0.891521475115;HMGA1,2:-0.930407766559;EP300:-0.932768184131;FOXO1,3,4:-0.951557282711;CDC5L:-0.96153663381;PAX6:-0.97584470063;MED-1{core}:-0.979397445426;ATF6:-0.991999110521;LMO2:-0.992384465053;STAT2,4,6:-0.997345290352;GTF2A1,2:-1.02908250296;SOX5:-1.03406204491;GLI1..3:-1.04033475516;AHR_ARNT_ARNT2:-1.04048796735;LEF1_TCF7_TCF7L1,2:-1.04973715557;NFATC1..3:-1.05169378185;TLX1..3_NFIC{dimer}:-1.05238349561;SP1:-1.0552753093;TFAP4:-1.05739216412;NR1H4:-1.07764770091;TFCP2:-1.09354262319;TP53:-1.1009394542;ALX4:-1.1286686632;GTF2I:-1.12868820784;MAZ:-1.16349157944;SOX2:-1.16928236553;ADNP_IRX_SIX_ZHX:-1.18483681707;NR3C1:-1.22235756638;HIC1:-1.23631463406;ZNF423:-1.25314747601;MAFB:-1.29245236698;TEAD1:-1.33360394602;FOX{D1,D2}:-1.39365382529;FOXL1:-1.40399191447;PAX1,9:-1.44569820634;EGR1..3:-1.46498473874;TBX4,5:-1.47420240703;XCPE1{core}:-1.57023407034;JUN:-1.57489494425;TFAP2B:-1.60125443674;PATZ1:-1.62593347455 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10770-110F5;search_select_hide=table117:FF:10770-110F5 | |||
}} | }} | ||
Latest revision as of 15:03, 3 June 2020
| Name: | acute myeloid leukemia (FAB M5) cell line:P31/FUJ |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13051 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13051
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13051
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0285 |
| 10 | 10 | 0.0239 |
| 100 | 100 | 0.425 |
| 101 | 101 | 0.0503 |
| 102 | 102 | 0.454 |
| 103 | 103 | 0.077 |
| 104 | 104 | 0.911 |
| 105 | 105 | 0.932 |
| 106 | 106 | 0.384 |
| 107 | 107 | 0.986 |
| 108 | 108 | 0.896 |
| 109 | 109 | 0.035 |
| 11 | 11 | 0.026 |
| 110 | 110 | 0.169 |
| 111 | 111 | 0.0182 |
| 112 | 112 | 0.415 |
| 113 | 113 | 0.67 |
| 114 | 114 | 0.0641 |
| 115 | 115 | 0.625 |
| 116 | 116 | 0.319 |
| 117 | 117 | 0.0482 |
| 118 | 118 | 0.252 |
| 119 | 119 | 0.223 |
| 12 | 12 | 0.952 |
| 120 | 120 | 0.528 |
| 121 | 121 | 0.727 |
| 122 | 122 | 0.823 |
| 123 | 123 | 0.129 |
| 124 | 124 | 0.0501 |
| 125 | 125 | 0.046 |
| 126 | 126 | 0.0211 |
| 127 | 127 | 0.0954 |
| 128 | 128 | 0.547 |
| 129 | 129 | 0.218 |
| 13 | 13 | 0.0539 |
| 130 | 130 | 0.358 |
| 131 | 131 | 0.389 |
| 132 | 132 | 0.976 |
| 133 | 133 | 0.797 |
| 134 | 134 | 0.343 |
| 135 | 135 | 0.758 |
| 136 | 136 | 0.203 |
| 137 | 137 | 0.518 |
| 138 | 138 | 0.183 |
| 139 | 139 | 0.365 |
| 14 | 14 | 0.967 |
| 140 | 140 | 0.522 |
| 141 | 141 | 0.0891 |
| 142 | 142 | 0.603 |
| 143 | 143 | 0.0416 |
| 144 | 144 | 0.925 |
| 145 | 145 | 0.59 |
| 146 | 146 | 0.991 |
| 147 | 147 | 0.483 |
| 148 | 148 | 0.0133 |
| 149 | 149 | 0.33 |
| 15 | 15 | 0.229 |
| 150 | 150 | 0.513 |
| 151 | 151 | 0.785 |
| 152 | 152 | 0.237 |
| 153 | 153 | 0.381 |
| 154 | 154 | 0.941 |
| 155 | 155 | 0.11 |
| 156 | 156 | 0.678 |
| 157 | 157 | 0.39 |
| 158 | 158 | 0.907 |
| 159 | 159 | 0.92 |
| 16 | 16 | 0.602 |
| 160 | 160 | 0.336 |
| 161 | 161 | 0.049 |
| 162 | 162 | 0.7 |
| 163 | 163 | 0.434 |
| 164 | 164 | 0.505 |
| 165 | 165 | 0.478 |
| 166 | 166 | 0.441 |
| 167 | 167 | 0.547 |
| 168 | 168 | 0.679 |
| 169 | 169 | 0.417 |
| 17 | 17 | 0.659 |
| 18 | 18 | 0.572 |
| 19 | 19 | 0.355 |
| 2 | 2 | 0.864 |
| 20 | 20 | 0.93 |
| 21 | 21 | 0.381 |
| 22 | 22 | 0.782 |
| 23 | 23 | 0.583 |
| 24 | 24 | 0.341 |
| 25 | 25 | 0.297 |
| 26 | 26 | 0.0361 |
| 27 | 27 | 0.381 |
| 28 | 28 | 0.666 |
| 29 | 29 | 0.0175 |
| 3 | 3 | 0.05 |
| 30 | 30 | 0.267 |
| 31 | 31 | 0.953 |
| 32 | 32 | 0.409 |
| 33 | 33 | 0.297 |
| 34 | 34 | 0.992 |
| 35 | 35 | 0.248 |
| 36 | 36 | 0.0289 |
| 37 | 37 | 0.293 |
| 38 | 38 | 0.313 |
| 39 | 39 | 0.589 |
| 4 | 4 | 0.0148 |
| 40 | 40 | 0.115 |
| 41 | 41 | 0.381 |
| 42 | 42 | 0.182 |
| 43 | 43 | 0.234 |
| 44 | 44 | 0.234 |
| 45 | 45 | 0.997 |
| 46 | 46 | 0.0609 |
| 47 | 47 | 0.0141 |
| 48 | 48 | 0.0536 |
| 49 | 49 | 0.0848 |
| 5 | 5 | 0.5 |
| 50 | 50 | 0.97 |
| 51 | 51 | 0.704 |
| 52 | 52 | 0.509 |
| 53 | 53 | 0.548 |
| 54 | 54 | 0.914 |
| 55 | 55 | 0.855 |
| 56 | 56 | 0.723 |
| 57 | 57 | 0.17 |
| 58 | 58 | 0.11 |
| 59 | 59 | 0.365 |
| 6 | 6 | 0.381 |
| 60 | 60 | 0.421 |
| 61 | 61 | 0.221 |
| 62 | 62 | 0.0506 |
| 63 | 63 | 0.368 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.579 |
| 66 | 66 | 8.54933e-5 |
| 67 | 67 | 0.49 |
| 68 | 68 | 0.992 |
| 69 | 69 | 0.168 |
| 7 | 7 | 0.0845 |
| 70 | 70 | 0.337 |
| 71 | 71 | 0.0184 |
| 72 | 72 | 0.765 |
| 73 | 73 | 0.678 |
| 74 | 74 | 0.824 |
| 75 | 75 | 0.00538 |
| 76 | 76 | 0.476 |
| 77 | 77 | 0.947 |
| 78 | 78 | 0.169 |
| 79 | 79 | 0.646 |
| 8 | 8 | 0.0636 |
| 80 | 80 | 0.478 |
| 81 | 81 | 0.118 |
| 82 | 82 | 0.474 |
| 83 | 83 | 0.587 |
| 84 | 84 | 0.593 |
| 85 | 85 | 0.543 |
| 86 | 86 | 0.386 |
| 87 | 87 | 0.206 |
| 88 | 88 | 0.251 |
| 89 | 89 | 0.35 |
| 9 | 9 | 0.688 |
| 90 | 90 | 0.186 |
| 91 | 91 | 1 |
| 92 | 92 | 0.837 |
| 93 | 93 | 0.732 |
| 94 | 94 | 0.185 |
| 95 | 95 | 0.136 |
| 96 | 96 | 0.127 |
| 97 | 97 | 0.47 |
| 98 | 98 | 0.285 |
| 99 | 99 | 0.846 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13051
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
