FF:10772-110F7: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	myelodysplastic syndrome cell line:SKM-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11934
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	76
cell type	myeloid cell
cell line	SKM-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004747

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11934		CAGE		DRX007956		DRR008828

Accession ID Hg19

Library id		BAM		CTSS
CNhs11934		DRZ000253		DRZ001638

Accession ID Hg38

Library id		BAM		CTSS
CNhs11934		DRZ011603		DRZ012988

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.699
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.044
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00227
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0473
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.194
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0.84
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.221
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.729
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.435
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.044
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0549
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.044
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.044
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.572
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0851
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0.022
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.195
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11934

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.142
MA0003.1	MA0003.1	0.864
MA0004.1	MA0004.1	0.00584
MA0006.1	MA0006.1	0.027
MA0007.1	MA0007.1	0.67
MA0009.1	MA0009.1	0.557
MA0014.1	MA0014.1	0.231
MA0017.1	MA0017.1	0.389
MA0018.2	MA0018.2	0.124
MA0019.1	MA0019.1	0.171
MA0024.1	MA0024.1	3.57696e-11
MA0025.1	MA0025.1	0.00823
MA0027.1	MA0027.1	0.897
MA0028.1	MA0028.1	2.21684e-8
MA0029.1	MA0029.1	0.566
MA0030.1	MA0030.1	0.234
MA0031.1	MA0031.1	0.106
MA0035.2	MA0035.2	0.6
MA0038.1	MA0038.1	0.318
MA0039.2	MA0039.2	0.922
MA0040.1	MA0040.1	0.59
MA0041.1	MA0041.1	0.439
MA0042.1	MA0042.1	0.7
MA0043.1	MA0043.1	0.00664
MA0046.1	MA0046.1	0.586
MA0047.2	MA0047.2	0.984
MA0048.1	MA0048.1	0.0865
MA0050.1	MA0050.1	0.0243
MA0051.1	MA0051.1	0.0636
MA0052.1	MA0052.1	0.256
MA0055.1	MA0055.1	0.00109
MA0057.1	MA0057.1	0.964
MA0058.1	MA0058.1	2.33201e-4
MA0059.1	MA0059.1	5.95893e-7
MA0060.1	MA0060.1	1.64813e-7
MA0061.1	MA0061.1	0.31
MA0062.2	MA0062.2	3.74097e-13
MA0065.2	MA0065.2	0.305
MA0066.1	MA0066.1	0.552
MA0067.1	MA0067.1	0.631
MA0068.1	MA0068.1	0.702
MA0069.1	MA0069.1	0.318
MA0070.1	MA0070.1	0.899
MA0071.1	MA0071.1	0.368
MA0072.1	MA0072.1	0.676
MA0073.1	MA0073.1	0.752
MA0074.1	MA0074.1	0.338
MA0076.1	MA0076.1	1.8558e-7
MA0077.1	MA0077.1	0.818
MA0078.1	MA0078.1	0.249
MA0079.2	MA0079.2	0.261
MA0080.2	MA0080.2	8.77444e-12
MA0081.1	MA0081.1	1.2234e-4
MA0083.1	MA0083.1	1.43128e-5
MA0084.1	MA0084.1	0.938
MA0087.1	MA0087.1	0.213
MA0088.1	MA0088.1	0.00619
MA0090.1	MA0090.1	2.0052e-6
MA0091.1	MA0091.1	0.257
MA0092.1	MA0092.1	0.62
MA0093.1	MA0093.1	0.00182
MA0099.2	MA0099.2	7.54148e-9
MA0100.1	MA0100.1	3.37203e-6
MA0101.1	MA0101.1	0.0709
MA0102.2	MA0102.2	0.00463
MA0103.1	MA0103.1	0.657
MA0104.2	MA0104.2	1.08117e-6
MA0105.1	MA0105.1	0.985
MA0106.1	MA0106.1	0.797
MA0107.1	MA0107.1	0.00856
MA0108.2	MA0108.2	5.01901e-6
MA0111.1	MA0111.1	0.884
MA0112.2	MA0112.2	0.279
MA0113.1	MA0113.1	0.127
MA0114.1	MA0114.1	0.211
MA0115.1	MA0115.1	0.29
MA0116.1	MA0116.1	0.0309
MA0117.1	MA0117.1	0.919
MA0119.1	MA0119.1	0.715
MA0122.1	MA0122.1	0.944
MA0124.1	MA0124.1	0.284
MA0125.1	MA0125.1	0.656
MA0131.1	MA0131.1	0.0019
MA0135.1	MA0135.1	0.349
MA0136.1	MA0136.1	3.0207e-22
MA0137.2	MA0137.2	0.413
MA0138.2	MA0138.2	0.74
MA0139.1	MA0139.1	0.333
MA0140.1	MA0140.1	0.875
MA0141.1	MA0141.1	0.501
MA0142.1	MA0142.1	0.968
MA0143.1	MA0143.1	0.281
MA0144.1	MA0144.1	0.656
MA0145.1	MA0145.1	0.194
MA0146.1	MA0146.1	0.658
MA0147.1	MA0147.1	8.64875e-8
MA0148.1	MA0148.1	0.292
MA0149.1	MA0149.1	0.148
MA0150.1	MA0150.1	0.0143
MA0152.1	MA0152.1	0.462
MA0153.1	MA0153.1	0.229
MA0154.1	MA0154.1	0.909
MA0155.1	MA0155.1	0.0506
MA0156.1	MA0156.1	8.83176e-15
MA0157.1	MA0157.1	0.152
MA0159.1	MA0159.1	0.458
MA0160.1	MA0160.1	0.56
MA0162.1	MA0162.1	0.96
MA0163.1	MA0163.1	1.45378e-5
MA0164.1	MA0164.1	0.755
MA0258.1	MA0258.1	0.536
MA0259.1	MA0259.1	0.00277

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11934

Novel motif	Logo	P-value
1	1	0.231
10	10	0.0701
100	100	0.0925
101	101	0.43
102	102	0.694
103	103	0.695
104	104	0.9
105	105	0.903
106	106	0.00122
107	107	0.0457
108	108	0.43
109	109	0.628
11	11	0.257
110	110	0.881
111	111	0.356
112	112	0.741
113	113	0.215
114	114	0.87
115	115	0.745
116	116	0.722
117	117	0.168
118	118	0.308
119	119	0.186
12	12	0.386
120	120	0.622
121	121	0.559
122	122	0.707
123	123	0.191
124	124	0.79
125	125	0.509
126	126	0.577
127	127	0.15
128	128	0.0635
129	129	0.55
13	13	0.00224
130	130	0.445
131	131	0.0404
132	132	0.704
133	133	0.963
134	134	0.435
135	135	0.139
136	136	0.117
137	137	0.781
138	138	0.504
139	139	0.31
14	14	0.582
140	140	0.305
141	141	0.658
142	142	0.251
143	143	0.0767
144	144	0.541
145	145	0.496
146	146	0.648
147	147	0.0634
148	148	0.251
149	149	0.0303
15	15	0.89
150	150	0.513
151	151	0.182
152	152	0.0109
153	153	0.483
154	154	0.734
155	155	0.231
156	156	0.788
157	157	0.0872
158	158	0.326
159	159	0.818
16	16	0.433
160	160	0.706
161	161	0.819
162	162	0.909
163	163	0.52
164	164	0.0574
165	165	0.866
166	166	0.774
167	167	0.535
168	168	0.0645
169	169	0.281
17	17	0.336
18	18	0.212
19	19	0.567
2	2	0.0778
20	20	0.0575
21	21	0.814
22	22	0.248
23	23	0.00391
24	24	0.0782
25	25	0.474
26	26	0.167
27	27	0.713
28	28	0.848
29	29	0.325
3	3	0.447
30	30	0.0844
31	31	0.0954
32	32	0.133
33	33	0.351
34	34	0.712
35	35	0.732
36	36	0.0409
37	37	0.952
38	38	0.846
39	39	0.362
4	4	0.791
40	40	0.151
41	41	0.413
42	42	0.364
43	43	0.466
44	44	0.705
45	45	0.134
46	46	0.973
47	47	0.179
48	48	0.119
49	49	0.642
5	5	0.361
50	50	0.936
51	51	0.648
52	52	0.0267
53	53	0.846
54	54	0.424
55	55	0.197
56	56	0.573
57	57	0.657
58	58	0.48
59	59	0.711
6	6	0.508
60	60	0.0581
61	61	0.331
62	62	0.874
63	63	0.963
64	64	0.457
65	65	0.279
66	66	0.162
67	67	0.942
68	68	0.296
69	69	0.646
7	7	0.303
70	70	0.0381
71	71	0.207
72	72	0.59
73	73	0.198
74	74	0.173
75	75	0.115
76	76	0.276
77	77	0.216
78	78	0.188
79	79	0.0671
8	8	0.488
80	80	0.26
81	81	0.688
82	82	0.194
83	83	0.674
84	84	0.757
85	85	0.00156
86	86	0.686
87	87	0.187
88	88	0.407
89	89	0.216
9	9	0.999
90	90	0.278
91	91	0.0978
92	92	0.0358
93	93	0.904
94	94	0.915
95	95	0.407
96	96	0.469
97	97	0.383
98	98	0.878
99	99	0.678

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11934

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:225 syndrome
DOID:74 hematopoietic system disease
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
1287 (cardiovascular system disease)
7 (disease of anatomical entity)
74 (hematopoietic system disease)
225 (syndrome)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004747
+|accession_numbers=CAGE;DRX007956;DRR008828;DRZ000253;DRZ001638;DRZ011603;DRZ012988
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=DOID:4,DOID:1287,DOID:7,DOID:74,DOID:225
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.21!160.36!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.13!132.83!PLEK;;chr6:135502501..135502546,+!p1@MYB!2.00!117.47!MYB;;chr6:135502408..135502459,+!p2@MYB!1.90!91.22!MYB;;chr21:34442439..34442455,+!p1@OLIG1!1.76!56.23!OLIG1;;chr1:92949331..92949377,-!p2@GFI1!1.62!40.86!GFI1;;chr7:50344289..50344323,+!p1@IKZF1!1.62!40.86!IKZF1;;chr3:18486354..18486377,-!p2@SATB1!1.49!37.24!SATB1;;chrX:103499602..103499617,-!p1@ESX1!1.49!29.98!ESX1;;chr1:92951607..92951661,-!p1@GFI1!1.49!29.66!GFI1;;chr7:27205136..27205164,-!p1@HOXA9!1.47!28.81!HOXA9;;chr19:33793430..33793447,-!p1@CEBPA!1.44!108.51!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.44!26.78!SPI1;;chr7:27205106..27205134,-!p2@HOXA9!1.39!23.47!HOXA9;;chr21:34442540..34442560,+!p2@OLIG1!1.31!19.20!OLIG1;;chr14:75988771..75988826,+!p1@BATF!1.30!25.07!BATF;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.41!NFE2;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.60!IRF8;;chr6:135502472..135502489,+!p3@MYB!1.25!16.75!MYB;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.12!BCL11A;;chr12:54694807..54694832,-!p3@NFE2!1.23!16.00!NFE2;;chr20:42295745..42295765,+!p1@MYBL2!1.22!250.62!MYBL2;;chr11:32457075..32457095,-!p1@WT1!1.22!15.68!WT1;;chr22:19748231..19748317,+!p1@TBX1!1.22!15.68!TBX1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.30!IKZF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.17!13.87!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.15!174.55!ZEB2;;chr1:167298300..167298319,+!p2@POU2F1!1.15!13.23!POU2F1;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.12!BARX1;;chr20:50159198..50159299,-!p1@NFATC2!1.13!18.14!NFATC2;;chr7:113726357..113726443,+!p1@FOXP2!1.12!21.23!FOXP2;;chr20:42295713..42295738,+!p2@MYBL2!1.11!70.84!MYBL2;;chr7:137620684..137620711,-!p4@CREB3L2!1.11!11.74!CREB3L2;;chr10:94449703..94449718,+!p1@HHEX!1.10!45.24!HHEX;;chr13:41593425..41593480,-!p1@ELF1!1.09!71.91!ELF1;;chr1:92952473..92952489,-!p3@GFI1!1.09!11.20!GFI1;;chrX:103499660..103499666,-!p2@ESX1!1.09!11.20!ESX1;;chr10:31288398..31288455,-!p2@ZNF438!1.06!12.27!ZNF438;;chr21:36421535..36421610,-!p2@RUNX1!1.05!36.92!RUNX1;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.36!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.05!10.35!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.03!9.71!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.03!9.71!ZNF385A;;chr19:12203100..12203132,+!p1@ZNF788!1.02!19.63!ZNF788;;chr11:31832658..31832681,-!p1@PAX6!1.01!9.18!PAX6;;chr11:47400045..47400060,-!p6@SPI1!0.99!8.75!SPI1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.94!HES6;;chr1:156470515..156470542,-!p2@MEF2D!0.95!42.36!MEF2D;;chr17:41277372..41277418,-!p1@BRCA1!0.95!29.98!BRCA1;;chr16:54320617..54320643,-!p3@IRX3!0.94!10.14!IRX3;;chr8:145669791..145669834,-!p1@TONSL!0.93!22.41!TONSL;;chr15:76629123..76629151,+!p1@ISL2!0.93!8.43!ISL2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.47!IKZF1;;chr11:128563948..128564003,+!p1@FLI1!0.92!92.72!FLI1;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.10!NCOA7;;chr19:22817119..22817145,+!p1@ZNF492!0.90!11.95!ZNF492;;chr11:47399996..47400014,-!p4@SPI1!0.89!6.72!SPI1;;chr2:60780753..60780800,-!p1@BCL11A!0.88!34.03!BCL11A;;chr16:54320646..54320672,-!p2@IRX3!0.88!10.35!IRX3;;chr7:27213893..27213954,-!p1@HOXA10!0.88!6.61!HOXA10;;chr1:92949505..92949543,-!p5@GFI1!0.88!6.51!GFI1;;chr2:185463247..185463263,+!p1@ZNF804A!0.87!11.74!ZNF804A;;chr16:54320158..54320200,-!p5@IRX3!0.87!9.50!IRX3;;chr2:60778035..60778060,-!p4@BCL11A!0.87!7.68!BCL11A;;chr6:15246200..15246214,+!p2@JARID2!0.85!17.50!JARID2;;chr12:11802547..11802560,+!p5@ETV6!0.85!8.64!ETV6;;chr6:144385698..144385742,-!p2@PLAGL1!0.85!7.58!PLAGL1;;chr2:200320768..200320800,-!p4@SATB2!0.85!6.08!SATB2;;chr6:20402102..20402152,+!p1@E2F3!0.84!26.03!E2F3;;chr6:126240442..126240459,+!p4@NCOA7!0.84!7.79!NCOA7;;chr7:27196267..27196311,-!p1@HOXA7!0.84!5.97!HOXA7;;chr11:6947720..6947812,+!p1@ZNF215!0.83!7.68!ZNF215;;chr7:115670804..115670825,-!p1@TFEC!0.82!5.65!TFEC;;chr16:54320675..54320715,-!p1@IRX3!0.81!12.27!IRX3;;chr10:101292684..101292706,+!p1@NKX2-3!0.80!5.33!NKX2-3;;chr10:131762504..131762555,-!p1@EBF3!0.80!5.33!EBF3;;chr2:208031943..208031978,-!p5@KLF7!0.79!7.15!KLF7;;chr2:60781201..60781258,-!p3@BCL11A!0.79!5.23!BCL11A;;chr16:54320322..54320343,-!p7@IRX3!0.78!5.01!IRX3;;chr11:19262461..19262476,-!p5@E2F8!0.78!5.01!E2F8;;chrX:66763856..66763896,+!p1@AR!0.77!7.26!AR;;chr2:68592394..68592405,+!p2@PLEK!0.77!4.91!PLEK;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.19!ETV4;;chrX:101186981..101187030,-!p1@ZMAT1!0.76!16.96!ZMAT1;;chr10:94449675..94449694,+!p2@HHEX!0.76!13.76!HHEX;;chr6:126240463..126240489,+!p6@NCOA7!0.76!5.44!NCOA7;;chr19:13213511..13213545,-!p2@LYL1!0.76!5.23!LYL1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.75!10.67!SOHLH2;;chr1:25256756..25256774,-!p1@RUNX3!0.75!9.28!RUNX3;;chr2:200322654..200322707,-!p2@SATB2!0.75!6.93!SATB2;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.15!GATA2;;chr11:19262486..19262512,-!p4@E2F8!0.74!5.76!E2F8;;chr6:135516877..135516900,+!p5@MYB!0.74!4.48!MYB;;chr21:36421518..36421532,-!p11@RUNX1!0.74!4.48!RUNX1;;chr1:247171347..247171366,-!p2@ZNF695!0.73!8.54!ZNF695;;chr2:145277882..145277967,-!p3@ZEB2!0.72!7.90!ZEB2;;chr8:128747661..128747703,+!p6@MYC!0.71!5.76!MYC;;chr11:19263160..19263176,-!p1@E2F8!0.71!5.01!E2F8;;chr11:32457103..32457123,-!p3@WT1!0.71!4.16!WT1;;chr17:48046543..48046575,+!p2@DLX4!0.71!4.16!DLX4;;chr8:128748470..128748487,+!p1@MYC!0.70!501.34!MYC;;chr8:123793708..123793723,+!p6@ZHX2!0.70!4.05!ZHX2;;chr14:37131058..37131139,+!p1@PAX9!0.70!4.05!PAX9;;chr1:167298384..167298412,+!p3@POU2F1!0.70!4.05!POU2F1;;chr2:100759037..100759058,-!p2@AFF3!0.70!4.05!AFF3;;chr20:32274179..32274213,-!p1@E2F1!0.69!29.34!E2F1;;chr7:64126535..64126559,+!p2@ZNF107!0.69!9.07!ZNF107;;chr7:27135591..27135658,-!p1@HOXA1!0.69!8.11!HOXA1;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.87!ZBTB16;;chr17:42295777..42295816,-!p7@UBTF!0.69!4.80!UBTF;;chr16:54320280..54320291,-!p9@IRX3!0.69!3.95!IRX3;;chr10:31146697..31146708,-!p11@ZNF438!0.69!3.95!ZNF438;;chr1:247171316..247171336,-!p3@ZNF695!0.68!5.97!ZNF695;;chr12:54694653..54694672,-!p2@NFE2!0.68!3.84!NFE2;;chr7:27224842..27224872,-!p1@HOXA11!0.68!3.73!HOXA11;;chr2:63277948..63277974,+!p1@OTX1!0.68!3.73!OTX1;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.11!WDHD1;;chr6:15246217..15246228,+!p3@JARID2!0.67!7.04!JARID2;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.63!RFX8;;chr10:31146746..31146755,-!p14@ZNF438!0.67!3.63!ZNF438;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.63!E2F8;;chr1:151319710..151319774,-!p1@RFX5!0.66!40.65!RFX5;;chr6:31126291..31126399,+!p1@TCF19!0.66!39.05!TCF19;;chr6:126240356..126240379,+!p7@NCOA7!0.66!4.48!NCOA7;;chr11:47399920..47399931,-!p7@SPI1!0.66!3.52!SPI1;;chr16:54319010..54319041,-!p8@IRX3!0.66!3.52!IRX3;;chr5:176738887..176738934,-!p1@MXD3!0.65!26.89!MXD3;;chr15:41913690..41913753,+!p2@MGA!0.65!9.39!MGA;;chr1:221052994..221053008,+!p6@HLX!0.65!4.27!HLX;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.46!NFATC1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.37!L3MBTL4;;chr3:71631151..71631194,-!p15@FOXP1!0.64!3.84!FOXP1;;chr19:10416315..10416333,-!p1@ZGLP1!0.64!3.41!ZGLP1;;chr19:13213954..13214021,-!p4@LYL1!0.64!3.41!LYL1;;chr3:126076264..126076305,-!p2@KLF15!0.63!4.80!KLF15;;chr1:227751231..227751273,+!p1@ZNF678!0.62!23.58!ZNF678;;chr17:46655730..46655791,-!p1@HOXB4!0.62!8.86!HOXB4;;chr1:156470494..156470505,-!p3@MEF2D!0.62!4.91!MEF2D;;chr6:28304275..28304282,-!p7@ZNF323!0.62!3.20!ZNF323;;chr8:128748308..128748324,+!p2@MYC!0.61!102.64!MYC;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.61!12.91!ZNF670;;chr6:126102254..126102289,+!p5@NCOA7!0.61!9.82!NCOA7;;chrX:84499081..84499115,+!p2@ZNF711!0.61!4.91!ZNF711;;chr6:135513595..135513617,+!p4@MYB!0.61!3.09!MYB;;chr17:48045917..48045977,+!p1@DLX4!0.61!3.09!DLX4;;chr18:55102598..55102623,+!p1@ONECUT2!0.61!3.09!ONECUT2;;chr18:56940611..56940660,-!p1@RAX!0.61!3.09!RAX;;chr6:15246261..15246312,+!p1@JARID2!0.60!87.81!JARID2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.60!56.65!MIS18BP1;;chr8:124286495..124286548,-!p1@ZHX1!0.60!35.42!ZHX1;;chr2:200322229..200322251,-!p3@SATB2!0.60!2.99!SATB2;;chr19:10305581..10305646,-!p1@DNMT1!0.59!124.40!DNMT1;;chr19:12203069..12203094,+!p2@ZNF788!0.59!4.59!ZNF788;;chr16:54320101..54320125,-!p4@IRX3!0.59!4.48!IRX3;;chr8:128747757..128747800,+!p7@MYC!0.59!4.16!MYC;;chr7:27190547..27190591,-!p1@HOXA6!0.59!2.88!HOXA6;;chr7:50348268..50348366,+!p4@IKZF1!0.59!2.88!IKZF1;;chr2:172949484..172949522,+!p1@DLX1!0.59!2.88!DLX1;;chr2:42721205..42721307,+!p4@MTA3!0.59!2.88!MTA3;;chr21:36260980..36261011,-!p1@RUNX1!0.58!100.50!RUNX1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!45.45!HMGA1;;chr7:64126503..64126528,+!p1@ZNF107!0.58!24.01!ZNF107;;chr9:20622444..20622468,-!p2@MLLT3!0.58!10.56!MLLT3;;chrX:131623932..131623964,-!p7@MBNL3!0.58!4.37!MBNL3;;chr4:87857491..87857519,+!p10@AFF1!0.58!4.16!AFF1;;chrX:66763815..66763854,+!p2@AR!0.57!3.84!AR;;chr17:42295897..42295953,-!p10@UBTF!0.57!3.84!UBTF;;chr1:153940354..153940395,+!p1@CREB3L4!0.56!12.91!CREB3L4;;chr11:130184470..130184533,-!p2@ZBTB44!0.56!8.54!ZBTB44;;chr19:12163769..12163798,-!p1@ZNF878!0.56!3.63!ZNF878;;chr1:167298425..167298440,+!p8@POU2F1!0.56!2.67!POU2F1;;chr6:135516909..135516925,+!p6@MYB!0.56!2.67!MYB;;chr10:111967345..111967422,+!p1@MXI1!0.55!52.71!MXI1;;chr6:144329500..144329526,-!p4@PLAGL1!0.55!6.93!PLAGL1;;chr19:925727..925784,+!p3@ARID3A!0.55!6.29!ARID3A;;chr19:13213704..13213726,-!p3@LYL1!0.55!3.63!LYL1;;chr17:46675420..46675465,-!p3@HOXB6!0.55!3.09!HOXB6;;chr1:3569072..3569093,+!p1@TP73!0.55!2.56!TP73;;chr2:60778062..60778075,-!p6@BCL11A!0.55!2.56!BCL11A;;chr6:135516978..135516993,+!p7@MYB!0.55!2.56!MYB;;chr7:27224795..27224840,-!p2@HOXA11!0.55!2.56!HOXA11;;chr10:31288370..31288393,-!p3@ZNF438!0.55!2.56!ZNF438;;chr14:23588242..23588262,-!p1@CEBPE!0.55!2.56!CEBPE;;chr4:4291837..4291859,-!p2@LYAR!0.54!9.71!LYAR;;chr14:45722287..45722308,-!p2@MIS18BP1!0.54!7.79!MIS18BP1;;chr1:221052733..221052749,+!p2@HLX!0.54!3.41!HLX;;chr18:55102628..55102646,+!p2@ONECUT2!0.54!2.45!ONECUT2;;chr5:35959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@@ Line 36: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myelodysplastic%2520syndrome%2520cell%2520line%253aSKM-1.CNhs11934.10772-110F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myelodysplastic%2520syndrome%2520cell%2520line%253aSKM-1.CNhs11934.10772-110F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myelodysplastic%2520syndrome%2520cell%2520line%253aSKM-1.CNhs11934.10772-110F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myelodysplastic%2520syndrome%2520cell%2520line%253aSKM-1.CNhs11934.10772-110F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10772-110F7
 |is_a=DOID:225;;DOID:74;;EFO:0002091;;FF:0000003;;FF:0000210
 |is_obsolete=
+|library_id=CNhs11934
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+|microRNAs_nn=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10772
 |name=myelodysplastic syndrome cell line:SKM-1
 |namespace=FANTOM5
@@ Line 44: / Line 59: @@
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-|profile_rnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 59: / Line 77: @@
 |rna_weight_ug=9.40653
 |sample_age=76
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0118
 |sample_cell_line=SKM-1
@@ Line 80: / Line 99: @@
 |top_motifs=MYB:2.12624025534;E2F1..5:1.75324808807;NFY{A,B,C}:1.33489119083;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.21022376933;bHLH_family:1.13279903785;YY1:1.06653108576;EP300:1.05569388078;ELK1,4_GABP{A,B1}:0.953035414514;BREu{core}:0.945066593907;NRF1:0.936691468057;HBP1_HMGB_SSRP1_UBTF:0.906302498831;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.891038838446;SPIB:0.859059981313;ELF1,2,4:0.857523098169;HIF1A:0.823036870189;ZNF143:0.807474864577;TEF:0.805602661482;SPI1:0.725748955664;PAX8:0.720399714416;PITX1..3:0.710945131674;FOXP1:0.708416259787;DMAP1_NCOR{1,2}_SMARC:0.697543621606;POU5F1:0.654171802531;RUNX1..3:0.62899880336;NANOG{mouse}:0.59009013131;NANOG:0.587599189126;MYOD1:0.553150462497;FOXA2:0.523702872002;VSX1,2:0.51521243888;NKX2-2,8:0.503642181705;NR5A1,2:0.491609171838;ETS1,2:0.425378685853;NKX3-1:0.407238499901;TLX2:0.385698222515;CEBPA,B_DDIT3:0.372622048165;NR6A1:0.367192622365;POU2F1..3:0.354693767216;PBX1:0.34769536293;FOXQ1:0.294835965378;POU3F1..4:0.288452662781;TFDP1:0.286518365425;GATA6:0.281166829808;NFIL3:0.268763932995;CRX:0.256104428371;RFX2..5_RFXANK_RFXAP:0.237839734555;GFI1:0.219484906947;OCT4_SOX2{dimer}:0.202747472133;RBPJ:0.200835448283;CUX2:0.198071036394;HOX{A6,A7,B6,B7}:0.188677185404;FOXD3:0.169794191914;POU1F1:0.168950293125;PAX4:0.164824070734;FOXP3:0.146018900838;PAX5:0.144131290864;HAND1,2:0.14227786506;DBP:0.0983103862964;ZNF238:0.094355380958;TOPORS:0.093388437846;SOX{8,9,10}:0.0864377217255;MTF1:0.0734435365819;ONECUT1,2:0.061832007506;IRF7:0.0597757023907;HOXA9_MEIS1:0.0462277377229;AHR_ARNT_ARNT2:0.0391719458656;NKX2-3_NKX2-5:0.0259282557579;AIRE:0.0166023573604;PDX1:0.0158545787439;HLF:-0.00368067901915;PRRX1,2:-0.00402001736586;ATF5_CREB3:-0.00592425028821;ALX1:-0.00858037462466;IRF1,2:-0.0255094123408;ARID5B:-0.0516649899989;PAX2:-0.0528110943743;REST:-0.0567300090631;CDX1,2,4:-0.0684361361346;AR:-0.0801437482117;BPTF:-0.0813257165345;STAT1,3:-0.0852808793551;EN1,2:-0.0872851547187;IKZF1:-0.0993325194871;LHX3,4:-0.101900806663;HOX{A4,D4}:-0.109315083936;ZNF423:-0.121975672243;HNF1A:-0.146391586424;SNAI1..3:-0.157650242084;PAX6:-0.173935016684;FOXM1:-0.18057553789;ZEB1:-0.184253202001;NKX2-1,4:-0.195591793986;PRDM1:-0.199856303762;HOX{A5,B5}:-0.214047903448;GCM1,2:-0.21743472348;MEF2{A,B,C,D}:-0.225681821917;NKX6-1,2:-0.265557577685;ATF4:-0.266274311597;SREBF1,2:-0.274133640816;FOX{I1,J2}:-0.276667457066;ZBTB16:-0.279170585272;HNF4A_NR2F1,2:-0.281821581435;TBP:-0.285833022075;CREB1:-0.315522223076;PAX3,7:-0.318961046535;IKZF2:-0.32686001174;RFX1:-0.33381017432;KLF4:-0.339540103526;NHLH1,2:-0.369183756759;POU6F1:-0.375598552275;ZFP161:-0.376727130712;NFKB1_REL_RELA:-0.377668241048;MZF1:-0.396248060271;FOX{F1,F2,J1}:-0.428833070205;MYBL2:-0.436745829896;EBF1:-0.448505887404;FOXN1:-0.492744382888;SP1:-0.494073583656;FOS_FOS{B,L1}_JUN{B,D}:-0.495629814988;TGIF1:-0.50151455551;STAT5{A,B}:-0.503516977125;NFE2:-0.510605060022;GATA4:-0.511301438835;RORA:-0.51219162525;HSF1,2:-0.517009157769;FOSL2:-0.517522136314;HES1:-0.517898992445;BACH2:-0.586536035042;UFEwm:-0.597445328423;HIC1:-0.600679103732;LMO2:-0.604367155018;MYFfamily:-0.615287400212;ESRRA:-0.621020668459;ZNF384:-0.637481830736;TFAP2B:-0.64274476932;LEF1_TCF7_TCF7L1,2:-0.65670991321;ALX4:-0.657344607364;SOX17:-0.657703680293;ADNP_IRX_SIX_ZHX:-0.666740043789;PPARG:-0.677918895494;NFIX:-0.70977176692;NKX3-2:-0.71141937957;XBP1:-0.712942742295;SOX5:-0.763281963561;NFE2L2:-0.782637124075;T:-0.783483689804;GTF2A1,2:-0.802434056168;GTF2I:-0.816613769554;ZNF148:-0.822158957924;TP53:-0.851525798993;ATF2:-0.858487429773;ATF6:-0.864179314951;ESR1:-0.877262514368;EVI1:-0.881862114929;GZF1:-0.912408757234;MTE{core}:-0.92086415089;NR3C1:-0.928347183336;RREB1:-0.934575147945;MED-1{core}:-0.956489243866;NFE2L1:-0.976837710407;FOX{D1,D2}:-0.98401615716;FOXL1:-0.986286389159;STAT2,4,6:-0.992187144066;RXRA_VDR{dimer}:-0.994530807788;NR1H4:-0.999540003067;TFAP2{A,C}:-1.00293971155;FOXO1,3,4:-1.00608115397;SRF:-1.01687067241;ZIC1..3:-1.01714050609;TEAD1:-1.03791213683;XCPE1{core}:-1.04341144588;PATZ1:-1.04899156582;MAFB:-1.12335408241;TLX1..3_NFIC{dimer}:-1.12910460208;SOX2:-1.16223171981;HMGA1,2:-1.17114692759;TAL1_TCF{3,4,12}:-1.17284027015;MAZ:-1.18427185311;TFAP4:-1.2226421821;ZBTB6:-1.2306375551;RXR{A,B,G}:-1.24282110954;EGR1..3:-1.24473999066;GFI1B:-1.30083365055;PAX1,9:-1.32553013507;CDC5L:-1.36499331047;SMAD1..7,9:-1.38427945786;TFCP2:-1.42652040703;SPZ1:-1.46998970392;HMX1:-1.49533187031;JUN:-1.51322175239;NFATC1..3:-1.53330777443;TBX4,5:-1.63661162985;GLI1..3:-1.7244774484
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10772-110F7;search_select_hide=table117:FF:10772-110F7
 }}

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FF:10772-110F7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0