FF:10781-110G7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005620 | |||
|accession_numbers=CAGE;DRX008011;DRR008883;DRZ000308;DRZ001693;DRZ011658;DRZ013043 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000163,CL:0000167,CL:0000164,CL:0000502,CL:0000172,CL:0000255,CL:0000173 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994,DOID:169,DOID:4430 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:10781-110G7 | |fonse_cell_line=FF:10781-110G7 | ||
|fonse_cell_line_closure=FF:10781-110G7 | |fonse_cell_line_closure=FF:10781-110G7 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10781-110G7 | |id=FF:10781-110G7 | ||
|is_a=CL:0000173;;DOID:4430;;EFO:0002091;;FF:0000003;;FF:0000210 | |is_a=CL:0000173;;DOID:4430;;EFO:0002091;;FF:0000003;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11869 | |||
|library_id_phase_based=2:CNhs11869 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10781 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10781 | |||
|name=somatostatinoma cell line:QGP-1 | |name=somatostatinoma cell line:QGP-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11869,LSID830,release010,COMPLETED | |profile_hcage=CNhs11869,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.0919048039302623,0,0,0,0,0,-0.160318030086386,0.0919048039302623,0.0135738253981444,-0.138199998774825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.014393896548076,0,0,0,0.433535267642773,0,-0.00605309233779522,0,0,0.0992844726032285,0,0,0,0,0,0,0,0,0,0,0,0,0.01947660574146,0,0,0,0,0,0,0,0,0.205888924058684,0,0,0,0,0,0.0453044557196281,0,-0.00508755731234284,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0775314107726541,0.134617200545136,0.40378647412956,0,0,0.113485063103334,0.0189065424756489,0,0,0,0.0919048039302623,-0.00613054730744413,0.0516787629663534,0,0,0,0,0,0,0.0919048039302623,0,0,0,0.22806201525037,0,0,0,0,0,0,-0.05042119195733,0.167716906896504,0,0,0,-0.0357552144051005,0,0,0.0109528105761388,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.00613054730744413,0,0.0919048039302623,0,0,0,0,0.807572948259121,0,0,0,0,0.409412608883207,0.0234891780394567,0.616259116865714,0.382405856692497,0,0,-0.033463672035597,0,0,0,0,0,0,0,0,0,1.35223051945917,0,0.649121781745149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.090399607701258,-0.0683442610773682,0,0,0,0,-0.224288267369193,0,0.046837423102763,-0.0827201683234173,0.552847527874537,-0.204233970069287,-0.055712496781182,0,0,0,-0.391308612207109,0.111660625380557,0,0,-0.121779851751874,0.04671239668971,0,0,-0.391044581551635,0,0.271957457323065,0.142583216193209,0,0.0293365552069693,0,0,0,0,0,0,0,0,0.167716906896504,0,0,-0.0574934668214365,-0.159271689782465,0,0,0,0,0.355919791063081,0.0919048039302623,0.0919048039302623,-0.141045093574476,-0.177727172554599,0.129810855413383,0.205844358126645,0,-0.302389727009913,-0.0181993791750758,-0.359645559393528,-0.352152309520731,-0.147401849371139,-0.189981719549847,-0.0642281951587423,0.0626330977832126,0.351288246577842,0.193727060822054,-0.065775652045623,-0.0073277600115938,-0.00634931113611348,0.188047572852279,0.0919048039302623,0.288407123604235,-0.0775089264793031,0.0731960419560689,0.0260369307236273,0.0132959444720504,-0.15198052807622,0.135052157966045,0.280122515686081,0.143699345275034,0.291446528022418,0.362980231724701,0.877157075134635,-0.0746885219347,0,-0.337713871455448,0.0510423029296675,0.0919048039302623,0.0919048039302623,0.0799294501162596,0.0811584281782228,0.122784311052067,0.0176187376490631,-0.25173639942889,0.0993726458191354,0,-0.328930215055287,0.183075098715046,0.167716906896504,0,-0.196029299909517,0,0,0,0.0155700827982977,0,-0.0906525629399249,0.0434932373346075,0.105278624845008,0,0.105255048419341,0.0430516071421355,-0.0195911966696583,0,0.22944815174619,0.0300703007712853,0.0846737786006024,0.132094921366996,0.057626508122285,-0.0404928006584403,0.197356060493823,-0.164990696339003,0.0378130849512979,1.07911404888003,-0.0518784698328228,0.15868988353522,0.178948647413531,0.0342889206388819,0.148432187242275,-0.0881268324752877,0.167716906896504,0.134617200545136,0.0591123526092213,0.254358679619775,-0.022161448408546,0,-0.326006212264362,0,0.207064127553969,0.0480066661672752,0.138195820396645,-0.54043375147324,0.537718458553912,0.0422554268873454,0,0.110279818326415,-0.62041403087747,0.0919048039302623,0.0340818719990514,0,0.288407123604235,-0.058462279404377,0.879399747933037,0.169017954489481,-0.0551310032309428,0,0.00125140282769964,0,0.288407123604235,0.639477176359017,-0.067759130867885,0,0.00652149856041941,-0.271068727812843,0.0743774227476137,-0.0240662695046718,0,0,-0.0903105706268683,0.0630882581460463,0,0.313462449125274,0.0282999587924606,0.323578907584292,-0.253326341486756,0.038170188490323,0.648461338377814,0.008401937811892,0,-0.177527765965176,0,0.15343242830995,0,0,-0.0821643897023201,0.115612949391958,0,0,1.34193308718309,0.0206990175537093,0,0,0,0,0,0,0,0.147572836303546,0.32376013372646,0,0.196569670131266,0,0,0,0,0,0,0,0,-1.59233083881968,0.0962138576761498,-0.12301741567642,0,0,0,0,0.278582739907203,0.0851705615095111,0,0.0358542003988719,0,0.0459524019651312,0,0,0.00576381414105094,0,0,0,0.144203561802117,0.0341743468765983,-0.0895485248141775,0,0,0,0.0114527220024445,0,0,0,0,-0.142463867785423,0,0,-0.137624030925702,0,0.214641247987021,0.67532270412876,0,0.245463714930072,-0.584371051469042,-0.0328962563313482,0,0,0.0270599918143473,0,0,-0.168873786347702,0,0.0919048039302623,0,0,0,0,0,0.0919048039302623,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.0292992750454117,-0.0922240566585104,0,0,0.0617058015661525,0,0,0,0,0.021846378886228,-0.0533693168479569,0,0,0,0,0,0,0,0,0.0544950595527272,0.22806201525037,0,0,0,0,-0.00508755731234284,0,0,0,0,-0.276399997549649,0,0,0.331569671454536,0,0,0,0,0,0,0,0,0,0.0919048039302623,0,0,0,-0.123319086035448,-0.156427097540891,0,0.0919048039302623,0,0,0,0.0919048039302623,0,0.0135738253981444,0,0,0,0,0.0538325331875265,0,0,0,0.318406193518431,0,-0.160318030086386,0,0,0,0.191373965480948,0,0.0919048039302623,0,0.0459524019651312,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.379661455529598,0,-0.195302712042647,0.00383237628875421,0,0,-0.116507821441997,0,0,0,0,0,0,0.0146119779366041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167716906896504,0,0,0,0,0,0,-0.0154155255197837,0,0,0,0,0,0,0,-0.00605309233779522,0,0,0.122986685364881,0,0,0,0,0,0,-0.0102819569737812,-0.237267997858016,0.0988752250587129,0,0,0,0.223309311200473,0,0,0.0858399270715711,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0919048039302623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.014393896548076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0459524019651312,0,0,0,0,0,0,0.0119410386897146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0118863356616239,0,0,0,-0.121181425726781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.11702174334616,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.204030491374208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.1273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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=142.305 | |rna_weight_ug=142.305 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0183 | |sample_cell_catalog=jcrb0183 | ||
|sample_cell_line=QGP-1 | |sample_cell_line=QGP-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.16402256073232e-243!GO:0043226;organelle;2.9237617637087e-202!GO:0043229;intracellular organelle;1.400008063012e-201!GO:0043231;intracellular membrane-bound organelle;4.20640628774942e-197!GO:0043227;membrane-bound organelle;4.20640628774942e-197!GO:0005737;cytoplasm;1.02334932998494e-174!GO:0044422;organelle part;6.14478979209613e-138!GO:0044446;intracellular organelle part;4.37626249606184e-136!GO:0044444;cytoplasmic part;2.13149231404331e-128!GO:0032991;macromolecular complex;1.60913663975052e-89!GO:0044237;cellular metabolic process;2.15268857945716e-84!GO:0044238;primary metabolic process;2.971699909624e-83!GO:0043170;macromolecule metabolic process;2.6347642505251e-77!GO:0030529;ribonucleoprotein complex;2.97111164304033e-76!GO:0005634;nucleus;1.20672001187305e-74!GO:0003723;RNA binding;2.74011715207189e-68!GO:0043233;organelle lumen;3.34156966257592e-68!GO:0031974;membrane-enclosed lumen;3.34156966257592e-68!GO:0044428;nuclear part;3.71989541639636e-67!GO:0005739;mitochondrion;1.16437481756368e-58!GO:0031090;organelle membrane;4.19437366886249e-56!GO:0005515;protein binding;3.05828713539985e-55!GO:0043283;biopolymer metabolic process;5.10403996880435e-50!GO:0015031;protein transport;1.11619243250822e-49!GO:0010467;gene expression;6.48505195737744e-49!GO:0006396;RNA processing;2.5485161139538e-48!GO:0033036;macromolecule localization;1.0548808983006e-47!GO:0005840;ribosome;1.07012365428132e-46!GO:0043234;protein complex;2.84322099813688e-45!GO:0045184;establishment of protein localization;1.9278353836169e-44!GO:0008104;protein localization;3.74091562197777e-44!GO:0006412;translation;2.40305294458201e-42!GO:0031981;nuclear lumen;9.77203292875259e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.95496414064084e-42!GO:0019538;protein metabolic process;1.55686143860118e-41!GO:0044429;mitochondrial part;8.40165903126312e-41!GO:0003735;structural constituent of ribosome;2.39986092500551e-39!GO:0031967;organelle envelope;1.71431461095489e-38!GO:0031975;envelope;2.12692354750164e-38!GO:0044267;cellular protein metabolic process;2.44709711345347e-38!GO:0016043;cellular component organization and biogenesis;2.46410853220705e-38!GO:0044260;cellular macromolecule metabolic process;7.32067891352092e-38!GO:0016071;mRNA metabolic process;1.27045459640881e-36!GO:0046907;intracellular transport;1.63334323296104e-36!GO:0009058;biosynthetic process;8.19682398994211e-36!GO:0033279;ribosomal subunit;4.61341188723644e-35!GO:0008380;RNA splicing;3.83340045500877e-34!GO:0009059;macromolecule biosynthetic process;1.6151563914346e-33!GO:0044249;cellular biosynthetic process;2.30776674061076e-33!GO:0006397;mRNA processing;9.87883199399437e-33!GO:0006886;intracellular protein transport;1.58779082264898e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.76770117111774e-29!GO:0051649;establishment of cellular localization;6.94517200971568e-29!GO:0005829;cytosol;2.86867497382119e-28!GO:0003676;nucleic acid binding;9.29944382090363e-28!GO:0051641;cellular localization;9.59251678651052e-28!GO:0005654;nucleoplasm;6.57363429505483e-27!GO:0000166;nucleotide binding;8.95120571742405e-27!GO:0005740;mitochondrial envelope;9.17651849762691e-27!GO:0006996;organelle organization and biogenesis;1.02039526418388e-26!GO:0012505;endomembrane system;1.41711062126443e-26!GO:0016070;RNA metabolic process;4.01899406519504e-25!GO:0019866;organelle inner membrane;5.46001923227163e-25!GO:0031966;mitochondrial membrane;6.2007442442294e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.32113947131468e-24!GO:0043228;non-membrane-bound organelle;1.99388248494687e-24!GO:0043232;intracellular non-membrane-bound organelle;1.99388248494687e-24!GO:0065003;macromolecular complex assembly;2.4938510986692e-23!GO:0005743;mitochondrial inner membrane;5.7347331217682e-23!GO:0005681;spliceosome;1.29580695643293e-22!GO:0044451;nucleoplasm part;2.35852483166268e-22!GO:0005794;Golgi apparatus;9.04592054633053e-22!GO:0006457;protein folding;1.00628924628808e-20!GO:0006119;oxidative phosphorylation;1.06951379378457e-20!GO:0044445;cytosolic part;2.67857346631273e-20!GO:0022607;cellular component assembly;4.5833726723511e-20!GO:0006259;DNA metabolic process;3.56831504944542e-19!GO:0032553;ribonucleotide binding;3.99009284357123e-19!GO:0032555;purine ribonucleotide binding;3.99009284357123e-19!GO:0016462;pyrophosphatase activity;6.2403180515366e-19!GO:0044455;mitochondrial membrane part;6.70519387797803e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.04556183692588e-19!GO:0015934;large ribosomal subunit;8.87694058997965e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;8.90000897033111e-19!GO:0022618;protein-RNA complex assembly;3.06055655200568e-18!GO:0016874;ligase activity;3.18689224376719e-18!GO:0017076;purine nucleotide binding;4.45085885339281e-18!GO:0017111;nucleoside-triphosphatase activity;6.89760959206273e-18!GO:0006512;ubiquitin cycle;8.31003795919892e-18!GO:0015935;small ribosomal subunit;2.35079792050384e-17!GO:0031980;mitochondrial lumen;3.119480928546e-17!GO:0005759;mitochondrial matrix;3.119480928546e-17!GO:0005730;nucleolus;5.99662028739078e-17!GO:0016192;vesicle-mediated transport;5.99662028739078e-17!GO:0048193;Golgi vesicle transport;1.14707904888581e-16!GO:0005783;endoplasmic reticulum;1.82494112998131e-16!GO:0043412;biopolymer modification;1.99680821769319e-16!GO:0044265;cellular macromolecule catabolic process;6.25416287508082e-16!GO:0008134;transcription factor binding;6.59043240584179e-16!GO:0051082;unfolded protein binding;1.14884701712642e-15!GO:0005746;mitochondrial respiratory chain;2.8248405904806e-15!GO:0044432;endoplasmic reticulum part;5.71847583855359e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.36989538357237e-15!GO:0019941;modification-dependent protein catabolic process;1.5407808497046e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.5407808497046e-14!GO:0008135;translation factor activity, nucleic acid binding;1.65280071981617e-14!GO:0044257;cellular protein catabolic process;2.41047700328789e-14!GO:0006464;protein modification process;2.52679173931505e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.54577595247818e-14!GO:0003954;NADH dehydrogenase activity;2.54577595247818e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.54577595247818e-14!GO:0032559;adenyl ribonucleotide binding;2.73536965898691e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.95030128561886e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.98238560594291e-14!GO:0005524;ATP binding;5.06246875068083e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.14284464651147e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.63271073674199e-13!GO:0000375;RNA splicing, via transesterification reactions;1.63271073674199e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.63271073674199e-13!GO:0030554;adenyl nucleotide binding;3.63948555681398e-13!GO:0005761;mitochondrial ribosome;4.02201246004327e-13!GO:0000313;organellar ribosome;4.02201246004327e-13!GO:0044431;Golgi apparatus part;6.5606493457971e-13!GO:0043285;biopolymer catabolic process;1.13878105189894e-12!GO:0016604;nuclear body;1.65225563132573e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.89144468303054e-12!GO:0042773;ATP synthesis coupled electron transport;1.89144468303054e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.89144468303054e-12!GO:0045271;respiratory chain complex I;1.89144468303054e-12!GO:0005747;mitochondrial respiratory chain complex I;1.89144468303054e-12!GO:0006605;protein targeting;2.23202204222021e-12!GO:0009057;macromolecule catabolic process;2.48099976971769e-12!GO:0005635;nuclear envelope;2.48099976971769e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.89331326329739e-12!GO:0051186;cofactor metabolic process;5.37980530336022e-12!GO:0044248;cellular catabolic process;5.72575461017045e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.32042380399434e-12!GO:0031965;nuclear membrane;9.9176869395908e-12!GO:0003743;translation initiation factor activity;1.04646249649546e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.24691766179328e-11!GO:0042254;ribosome biogenesis and assembly;1.29294977489196e-11!GO:0043687;post-translational protein modification;1.31794099193298e-11!GO:0005789;endoplasmic reticulum membrane;2.68043042774037e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.98596134660363e-11!GO:0006413;translational initiation;3.54113852147686e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;3.57735004813476e-11!GO:0016568;chromatin modification;4.89331043148859e-11!GO:0030163;protein catabolic process;5.13168852139587e-11!GO:0006446;regulation of translational initiation;5.66136500962195e-11!GO:0007049;cell cycle;8.44921971799658e-11!GO:0051276;chromosome organization and biogenesis;8.81022763325781e-11!GO:0006366;transcription from RNA polymerase II promoter;9.69100295724155e-11!GO:0016887;ATPase activity;1.01299075590825e-10!GO:0044453;nuclear membrane part;1.22700805408386e-10!GO:0003712;transcription cofactor activity;1.26167336160727e-10!GO:0048770;pigment granule;1.35022413910346e-10!GO:0042470;melanosome;1.35022413910346e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.60115547583908e-10!GO:0031982;vesicle;1.63938332781564e-10!GO:0045045;secretory pathway;1.66780868694149e-10!GO:0006323;DNA packaging;2.06039863454911e-10!GO:0042623;ATPase activity, coupled;2.19187362913554e-10!GO:0006399;tRNA metabolic process;3.41121688831884e-10!GO:0031410;cytoplasmic vesicle;3.43954340631163e-10!GO:0006732;coenzyme metabolic process;3.67533578801676e-10!GO:0008565;protein transporter activity;7.39948242444564e-10!GO:0000139;Golgi membrane;8.89679018899096e-10!GO:0006974;response to DNA damage stimulus;8.97806839813967e-10!GO:0006913;nucleocytoplasmic transport;1.15486998249312e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16180941730846e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24980701165505e-09!GO:0016607;nuclear speck;1.65960512074542e-09!GO:0051169;nuclear transport;2.28183739155049e-09!GO:0004386;helicase activity;2.34206651208057e-09!GO:0008639;small protein conjugating enzyme activity;2.55229765519728e-09!GO:0009055;electron carrier activity;3.69127369159434e-09!GO:0019829;cation-transporting ATPase activity;4.33839884791691e-09!GO:0005643;nuclear pore;4.5130122596756e-09!GO:0015630;microtubule cytoskeleton;5.57896752799161e-09!GO:0004842;ubiquitin-protein ligase activity;6.39091044558634e-09!GO:0005793;ER-Golgi intermediate compartment;9.27197527218147e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.12992537601135e-08!GO:0006403;RNA localization;1.45645790063349e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.45856506036854e-08!GO:0050657;nucleic acid transport;1.48751195026848e-08!GO:0051236;establishment of RNA localization;1.48751195026848e-08!GO:0050658;RNA transport;1.48751195026848e-08!GO:0019787;small conjugating protein ligase activity;2.00306021744247e-08!GO:0065002;intracellular protein transport across a membrane;2.13586925309654e-08!GO:0031988;membrane-bound vesicle;3.35262868171594e-08!GO:0006163;purine nucleotide metabolic process;3.47244401126503e-08!GO:0005768;endosome;4.06727711857406e-08!GO:0008026;ATP-dependent helicase activity;4.3108832501839e-08!GO:0016881;acid-amino acid ligase activity;5.71735492639934e-08!GO:0016023;cytoplasmic membrane-bound vesicle;6.35032258921368e-08!GO:0006281;DNA repair;6.39343560954557e-08!GO:0009259;ribonucleotide metabolic process;6.50204021035133e-08!GO:0015986;ATP synthesis coupled proton transport;7.63661725467803e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.63661725467803e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.63661725467803e-08!GO:0004812;aminoacyl-tRNA ligase activity;7.63661725467803e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.63661725467803e-08!GO:0009141;nucleoside triphosphate metabolic process;9.03743951706659e-08!GO:0005694;chromosome;9.17842603078816e-08!GO:0051188;cofactor biosynthetic process;9.37316966983959e-08!GO:0009150;purine ribonucleotide metabolic process;9.81181258445148e-08!GO:0006164;purine nucleotide biosynthetic process;1.03603763980617e-07!GO:0032446;protein modification by small protein conjugation;1.2781305675143e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.57131961632285e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.58439592846828e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.58439592846828e-07!GO:0006364;rRNA processing;1.80320600873787e-07!GO:0016567;protein ubiquitination;2.11128146350943e-07!GO:0043038;amino acid activation;2.16568587416244e-07!GO:0006418;tRNA aminoacylation for protein translation;2.16568587416244e-07!GO:0043039;tRNA aminoacylation;2.16568587416244e-07!GO:0016740;transferase activity;2.42110022923595e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.63031803472181e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.63031803472181e-07!GO:0016072;rRNA metabolic process;2.67413460283745e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.69440293913174e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.69440293913174e-07!GO:0000245;spliceosome assembly;2.71685048175202e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.87702084765479e-07!GO:0048475;coated membrane;2.87702084765479e-07!GO:0030117;membrane coat;2.87702084765479e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.56715512442525e-07!GO:0009060;aerobic respiration;3.70252229719352e-07!GO:0009260;ribonucleotide biosynthetic process;3.91430036619571e-07!GO:0006793;phosphorus metabolic process;4.12819033902595e-07!GO:0006796;phosphate metabolic process;4.12819033902595e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.20585013895422e-07!GO:0046930;pore complex;5.61336588466321e-07!GO:0051028;mRNA transport;5.97392240022896e-07!GO:0016564;transcription repressor activity;7.64900581482948e-07!GO:0019222;regulation of metabolic process;7.87492646247391e-07!GO:0006754;ATP biosynthetic process;9.27997831097583e-07!GO:0006753;nucleoside phosphate metabolic process;9.27997831097583e-07!GO:0022402;cell cycle process;1.09952588437161e-06!GO:0046034;ATP metabolic process;1.18225865818011e-06!GO:0045333;cellular respiration;1.22533705365068e-06!GO:0005525;GTP binding;1.3790537982323e-06!GO:0009108;coenzyme biosynthetic process;1.38882938307605e-06!GO:0017038;protein import;1.50067998430137e-06!GO:0030120;vesicle coat;1.57594852795978e-06!GO:0030662;coated vesicle membrane;1.57594852795978e-06!GO:0000785;chromatin;2.24602184801066e-06!GO:0006461;protein complex assembly;2.30643642187947e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.3282683003148e-06!GO:0043566;structure-specific DNA binding;2.37977111920842e-06!GO:0032940;secretion by cell;2.4708852828352e-06!GO:0005874;microtubule;2.99749553953784e-06!GO:0012501;programmed cell death;3.32832671885212e-06!GO:0006260;DNA replication;3.37143347135646e-06!GO:0009056;catabolic process;3.52237779275493e-06!GO:0044427;chromosomal part;3.63016144042541e-06!GO:0005770;late endosome;3.98711669676305e-06!GO:0000151;ubiquitin ligase complex;4.09607674287277e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.11462426457215e-06!GO:0006915;apoptosis;5.28428405319931e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.28610123578457e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.83024924404098e-06!GO:0009719;response to endogenous stimulus;8.09649041535255e-06!GO:0006613;cotranslational protein targeting to membrane;8.59789993313712e-06!GO:0007005;mitochondrion organization and biogenesis;9.34043171218561e-06!GO:0045259;proton-transporting ATP synthase complex;9.61540906322165e-06!GO:0003924;GTPase activity;1.01461020436353e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.09302876086114e-05!GO:0031324;negative regulation of cellular metabolic process;1.16461440632344e-05!GO:0003697;single-stranded DNA binding;1.16809085477094e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.16880612819787e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.1699977474044e-05!GO:0050794;regulation of cellular process;1.17757206211772e-05!GO:0006333;chromatin assembly or disassembly;1.25632276619745e-05!GO:0003724;RNA helicase activity;1.28366018499791e-05!GO:0016310;phosphorylation;1.28366018499791e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.49814022886401e-05!GO:0032561;guanyl ribonucleotide binding;1.56564570379041e-05!GO:0019001;guanyl nucleotide binding;1.56564570379041e-05!GO:0006752;group transfer coenzyme metabolic process;1.58899575347311e-05!GO:0044440;endosomal part;1.72013758797886e-05!GO:0010008;endosome membrane;1.72013758797886e-05!GO:0006099;tricarboxylic acid cycle;1.76929282879079e-05!GO:0046356;acetyl-CoA catabolic process;1.76929282879079e-05!GO:0006350;transcription;1.77603502306948e-05!GO:0048471;perinuclear region of cytoplasm;2.03755549246127e-05!GO:0008219;cell death;2.18470431093328e-05!GO:0016265;death;2.18470431093328e-05!GO:0009892;negative regulation of metabolic process;2.20580122416503e-05!GO:0003713;transcription coactivator activity;2.35241676053112e-05!GO:0008654;phospholipid biosynthetic process;2.44462752421014e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.95505810673232e-05!GO:0016779;nucleotidyltransferase activity;3.2123444605869e-05!GO:0005667;transcription factor complex;3.38580874771325e-05!GO:0003714;transcription corepressor activity;3.38580874771325e-05!GO:0009109;coenzyme catabolic process;3.43166836693225e-05!GO:0006084;acetyl-CoA metabolic process;3.56685825635001e-05!GO:0000314;organellar small ribosomal subunit;3.99608435306543e-05!GO:0005763;mitochondrial small ribosomal subunit;3.99608435306543e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.56475556799443e-05!GO:0015399;primary active transmembrane transporter activity;4.56475556799443e-05!GO:0005762;mitochondrial large ribosomal subunit;4.64913891501066e-05!GO:0000315;organellar large ribosomal subunit;4.64913891501066e-05!GO:0051427;hormone receptor binding;4.83664306908665e-05!GO:0005798;Golgi-associated vesicle;4.88628292233747e-05!GO:0043623;cellular protein complex assembly;5.04735473996097e-05!GO:0051168;nuclear export;7.09943258281109e-05!GO:0005773;vacuole;7.92668827458485e-05!GO:0016481;negative regulation of transcription;8.07702823236828e-05!GO:0031323;regulation of cellular metabolic process;8.43018922261274e-05!GO:0005788;endoplasmic reticulum lumen;8.48090640739974e-05!GO:0065004;protein-DNA complex assembly;8.54928461535333e-05!GO:0051187;cofactor catabolic process;8.66453142124961e-05!GO:0000278;mitotic cell cycle;8.83476456330648e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.03157083358718e-05!GO:0035257;nuclear hormone receptor binding;9.40144901509631e-05!GO:0048523;negative regulation of cellular process;9.99813816399797e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000112048071388336!GO:0009117;nucleotide metabolic process;0.000126611617274505!GO:0045454;cell redox homeostasis;0.000126611617274505!GO:0051246;regulation of protein metabolic process;0.00013364651629536!GO:0007264;small GTPase mediated signal transduction;0.000133836594329318!GO:0016859;cis-trans isomerase activity;0.000145066985417894!GO:0016787;hydrolase activity;0.000148105715404264!GO:0010468;regulation of gene expression;0.000154154028606561!GO:0051170;nuclear import;0.000161316693809649!GO:0051789;response to protein stimulus;0.000167637427211473!GO:0006986;response to unfolded protein;0.000167637427211473!GO:0003729;mRNA binding;0.00017101176937523!GO:0016563;transcription activator activity;0.000188794833379604!GO:0033116;ER-Golgi intermediate compartment membrane;0.000208837951009546!GO:0043021;ribonucleoprotein binding;0.000214229193282246!GO:0005813;centrosome;0.000270775992127717!GO:0006606;protein import into nucleus;0.000307080696563972!GO:0015631;tubulin binding;0.000307080696563972!GO:0031252;leading edge;0.00030722399836996!GO:0016853;isomerase activity;0.000312033804745102!GO:0019867;outer membrane;0.000340336453318105!GO:0019899;enzyme binding;0.000340877273020944!GO:0030176;integral to endoplasmic reticulum membrane;0.000386322032179816!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000406497601733479!GO:0008033;tRNA processing;0.000421739057242706!GO:0043492;ATPase activity, coupled to movement of substances;0.000431509779968925!GO:0030880;RNA polymerase complex;0.000454925693134678!GO:0031968;organelle outer membrane;0.000454925693134678!GO:0005741;mitochondrial outer membrane;0.000466762850738863!GO:0006351;transcription, DNA-dependent;0.000511391963335365!GO:0032774;RNA biosynthetic process;0.000512213266199467!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000518533967575926!GO:0031072;heat shock protein binding;0.000523814984639312!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000536394635591089!GO:0003899;DNA-directed RNA polymerase activity;0.000577645989391623!GO:0008186;RNA-dependent ATPase activity;0.000643852244845721!GO:0051726;regulation of cell cycle;0.000649135235995307!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000676578820669688!GO:0006612;protein targeting to membrane;0.000686651170603199!GO:0006818;hydrogen transport;0.000711358918744805!GO:0030867;rough endoplasmic reticulum membrane;0.000719787492526433!GO:0005839;proteasome core complex (sensu Eukaryota);0.000771978150268536!GO:0048500;signal recognition particle;0.000771978150268536!GO:0016491;oxidoreductase activity;0.000793370829249999!GO:0008017;microtubule binding;0.000793370829249999!GO:0046467;membrane lipid biosynthetic process;0.000799568983678993!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000815539445967207!GO:0008287;protein serine/threonine phosphatase complex;0.000824670064754043!GO:0000074;regulation of progression through cell cycle;0.000833125821927426!GO:0005815;microtubule organizing center;0.000839281289266028!GO:0005885;Arp2/3 protein complex;0.000851578169157072!GO:0015992;proton transport;0.000863106610184238!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000891513938331156!GO:0000428;DNA-directed RNA polymerase complex;0.000891513938331156!GO:0006891;intra-Golgi vesicle-mediated transport;0.000904117516519541!GO:0050789;regulation of biological process;0.000919961078063472!GO:0043069;negative regulation of programmed cell death;0.000935619952054815!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00106575602990191!GO:0006916;anti-apoptosis;0.00111619058309089!GO:0007017;microtubule-based process;0.00113911468204481!GO:0015980;energy derivation by oxidation of organic compounds;0.00122526200082283!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00132077113705919!GO:0048519;negative regulation of biological process;0.00135483177621866!GO:0022406;membrane docking;0.00138459852427405!GO:0048278;vesicle docking;0.00138459852427405!GO:0006892;post-Golgi vesicle-mediated transport;0.0014022719978865!GO:0030133;transport vesicle;0.00140246272942748!GO:0022403;cell cycle phase;0.00143082715023132!GO:0043066;negative regulation of apoptosis;0.00168051529383636!GO:0051920;peroxiredoxin activity;0.00169492005537624!GO:0051287;NAD binding;0.00171231047350626!GO:0005769;early endosome;0.00171916743631527!GO:0008168;methyltransferase activity;0.00176943695862623!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00176943695862623!GO:0004004;ATP-dependent RNA helicase activity;0.00177393302578435!GO:0000323;lytic vacuole;0.00181567999221834!GO:0005764;lysosome;0.00181567999221834!GO:0000049;tRNA binding;0.00184736549108171!GO:0016741;transferase activity, transferring one-carbon groups;0.00186292949311!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00195341055718361!GO:0006338;chromatin remodeling;0.00200142894374527!GO:0004674;protein serine/threonine kinase activity;0.00200874159715381!GO:0045449;regulation of transcription;0.00205162178350146!GO:0003690;double-stranded DNA binding;0.00209996243908111!GO:0006383;transcription from RNA polymerase III promoter;0.00210962864481095!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0021194553619588!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00217439650662135!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00217439650662135!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00217439650662135!GO:0004298;threonine endopeptidase activity;0.00219751786220127!GO:0005875;microtubule associated complex;0.00229198329355074!GO:0000087;M phase of mitotic cell cycle;0.00229768117365863!GO:0006904;vesicle docking during exocytosis;0.00239602705666462!GO:0006261;DNA-dependent DNA replication;0.00240325602848366!GO:0009165;nucleotide biosynthetic process;0.00246740746671687!GO:0006402;mRNA catabolic process;0.00255778456696385!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00272854490249589!GO:0045047;protein targeting to ER;0.00272854490249589!GO:0030137;COPI-coated vesicle;0.00274574438231015!GO:0006414;translational elongation;0.00275730098413948!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00276425066644574!GO:0003682;chromatin binding;0.00278044495783852!GO:0046489;phosphoinositide biosynthetic process;0.00292428371922108!GO:0007067;mitosis;0.00296802827365601!GO:0030384;phosphoinositide metabolic process;0.0029821412812293!GO:0043067;regulation of programmed cell death;0.00298576497421529!GO:0030134;ER to Golgi transport vesicle;0.00303120979402835!GO:0030658;transport vesicle membrane;0.0030988692054443!GO:0046474;glycerophospholipid biosynthetic process;0.00315623915971808!GO:0051301;cell division;0.00319605541654663!GO:0006091;generation of precursor metabolites and energy;0.00322838578731471!GO:0005905;coated pit;0.00336865709642589!GO:0031902;late endosome membrane;0.00336989251119406!GO:0042981;regulation of apoptosis;0.00337362480773123!GO:0048487;beta-tubulin binding;0.00345531730503281!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00345799279662798!GO:0000059;protein import into nucleus, docking;0.00355410793961142!GO:0043681;protein import into mitochondrion;0.00378260496708212!GO:0030118;clathrin coat;0.0038023964956019!GO:0051087;chaperone binding;0.00381998289373867!GO:0030127;COPII vesicle coat;0.00391557235806217!GO:0012507;ER to Golgi transport vesicle membrane;0.00391557235806217!GO:0044452;nucleolar part;0.00392435351692237!GO:0005048;signal sequence binding;0.00394112791920629!GO:0006650;glycerophospholipid metabolic process;0.00394112791920629!GO:0030135;coated vesicle;0.00398921212333851!GO:0005684;U2-dependent spliceosome;0.00401091538372501!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00401091538372501!GO:0006352;transcription initiation;0.00409597663883675!GO:0006839;mitochondrial transport;0.00409597663883675!GO:0003702;RNA polymerase II transcription factor activity;0.00430233367164744!GO:0003711;transcription elongation regulator activity;0.00432732755657001!GO:0031716;calcitonin receptor binding;0.00456492553285786!GO:0001984;vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure;0.00456492553285786!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00466544102606633!GO:0006405;RNA export from nucleus;0.00467390963475105!GO:0008312;7S RNA binding;0.00483332119383311!GO:0035258;steroid hormone receptor binding;0.00487940882846676!GO:0045892;negative regulation of transcription, DNA-dependent;0.00489045252288816!GO:0040029;regulation of gene expression, epigenetic;0.00494435279799644!GO:0031970;organelle envelope lumen;0.00498832353294749!GO:0005637;nuclear inner membrane;0.00507664012188839!GO:0012506;vesicle membrane;0.00533075767460275!GO:0006626;protein targeting to mitochondrion;0.00539259156670881!GO:0044433;cytoplasmic vesicle part;0.00547333774762523!GO:0016251;general RNA polymerase II transcription factor activity;0.00571082264819538!GO:0016272;prefoldin complex;0.00577397611148414!GO:0030663;COPI coated vesicle membrane;0.0057853206490097!GO:0030126;COPI vesicle coat;0.0057853206490097!GO:0016301;kinase activity;0.00596579737328217!GO:0045786;negative regulation of progression through cell cycle;0.00604216984775762!GO:0030660;Golgi-associated vesicle membrane;0.00672028868846538!GO:0019752;carboxylic acid metabolic process;0.00674635969401638!GO:0006401;RNA catabolic process;0.00773573601029952!GO:0006355;regulation of transcription, DNA-dependent;0.00787412994355666!GO:0006082;organic acid metabolic process;0.00830819855484229!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00832464778007505!GO:0000287;magnesium ion binding;0.00903010207968372!GO:0006611;protein export from nucleus;0.0092679298083277!GO:0008022;protein C-terminus binding;0.00927865523806708!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00927865523806708!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00927865523806708!GO:0000792;heterochromatin;0.0094464331307903!GO:0008276;protein methyltransferase activity;0.0104367251281188!GO:0031497;chromatin assembly;0.0111468749994563!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111468749994563!GO:0030145;manganese ion binding;0.0112326243668997!GO:0005774;vacuolar membrane;0.0114752796638588!GO:0030659;cytoplasmic vesicle membrane;0.0120595688439246!GO:0005832;chaperonin-containing T-complex;0.0123942977552684!GO:0016311;dephosphorylation;0.0123942977552684!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0123942977552684!GO:0015002;heme-copper terminal oxidase activity;0.0123942977552684!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0123942977552684!GO:0004129;cytochrome-c oxidase activity;0.0123942977552684!GO:0016363;nuclear matrix;0.0127323068934402!GO:0044262;cellular carbohydrate metabolic process;0.0131252171090377!GO:0004722;protein serine/threonine phosphatase activity;0.0131808547724448!GO:0016197;endosome transport;0.0132143408665795!GO:0030503;regulation of cell redox homeostasis;0.0132143408665795!GO:0006376;mRNA splice site selection;0.0132510477389357!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0132510477389357!GO:0022890;inorganic cation transmembrane transporter activity;0.0137940511081229!GO:0005869;dynactin complex;0.0140877742714461!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0141623062794038!GO:0009225;nucleotide-sugar metabolic process;0.0146057873229732!GO:0003746;translation elongation factor activity;0.0146712182336445!GO:0004448;isocitrate dehydrogenase activity;0.0146960960039839!GO:0005669;transcription factor TFIID complex;0.0150538647681519!GO:0006505;GPI anchor metabolic process;0.0152592506527235!GO:0030027;lamellipodium;0.0154777653131463!GO:0006506;GPI anchor biosynthetic process;0.0154799380014585!GO:0004576;oligosaccharyl transferase activity;0.0156405913717802!GO:0008139;nuclear localization sequence binding;0.0157799582182389!GO:0016126;sterol biosynthetic process;0.0157799582182389!GO:0008601;protein phosphatase type 2A regulator activity;0.0158889413315746!GO:0050662;coenzyme binding;0.0160420040106451!GO:0007010;cytoskeleton organization and biogenesis;0.0160420040106451!GO:0003756;protein disulfide isomerase activity;0.0168047768446768!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0168047768446768!GO:0019887;protein kinase regulator activity;0.0171875834203535!GO:0000159;protein phosphatase type 2A complex;0.0175691486815559!GO:0030968;unfolded protein response;0.0176074427567678!GO:0008610;lipid biosynthetic process;0.0176580137471554!GO:0008250;oligosaccharyl transferase complex;0.017746970687027!GO:0051252;regulation of RNA metabolic process;0.017746970687027!GO:0033673;negative regulation of kinase activity;0.0182707268809457!GO:0006469;negative regulation of protein kinase activity;0.0182707268809457!GO:0048245;eosinophil chemotaxis;0.0186158310737111!GO:0019207;kinase regulator activity;0.0186451515200494!GO:0006984;ER-nuclear signaling pathway;0.0188000755156722!GO:0043414;biopolymer methylation;0.0189853575234591!GO:0006497;protein amino acid lipidation;0.0192167682092257!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0192167682092257!GO:0010257;NADH dehydrogenase complex assembly;0.0192167682092257!GO:0033108;mitochondrial respiratory chain complex assembly;0.0192167682092257!GO:0000096;sulfur amino acid metabolic process;0.0192167682092257!GO:0005938;cell cortex;0.0196910329889025!GO:0019318;hexose metabolic process;0.0197592493748787!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0202422901645545!GO:0006334;nucleosome assembly;0.0203951818548259!GO:0005791;rough endoplasmic reticulum;0.020710936040683!GO:0030433;ER-associated protein catabolic process;0.021227242816772!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.021227242816772!GO:0006643;membrane lipid metabolic process;0.0214103640140118!GO:0051540;metal cluster binding;0.0217006918178198!GO:0051536;iron-sulfur cluster binding;0.0217006918178198!GO:0004527;exonuclease activity;0.0217325883408179!GO:0031124;mRNA 3'-end processing;0.0217807160980281!GO:0009081;branched chain family amino acid metabolic process;0.0219278367382736!GO:0004721;phosphoprotein phosphatase activity;0.0219278367382736!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0227660772773911!GO:0006400;tRNA modification;0.0237960528466435!GO:0000279;M phase;0.0237960528466435!GO:0008180;signalosome;0.0240704364975701!GO:0030695;GTPase regulator activity;0.0242420369797673!GO:0006595;polyamine metabolic process;0.0243124256193999!GO:0045947;negative regulation of translational initiation;0.024392487077862!GO:0030521;androgen receptor signaling pathway;0.0248792120032983!GO:0005996;monosaccharide metabolic process;0.0249156193059748!GO:0050811;GABA receptor binding;0.0249156193059748!GO:0044437;vacuolar part;0.0249156193059748!GO:0005758;mitochondrial intermembrane space;0.0251310220354009!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0252296780356262!GO:0051329;interphase of mitotic cell cycle;0.0258464459860232!GO:0006695;cholesterol biosynthetic process;0.0260197626051296!GO:0051325;interphase;0.0266156961882931!GO:0016791;phosphoric monoester hydrolase activity;0.0267708492677543!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0270199502858414!GO:0006144;purine base metabolic process;0.027306057604049!GO:0005083;small GTPase regulator activity;0.0273262155748051!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0273689228437625!GO:0006607;NLS-bearing substrate import into nucleus;0.0281291897646079!GO:0043407;negative regulation of MAP kinase activity;0.0282275223109453!GO:0051775;response to redox state;0.0286780785868206!GO:0006980;redox signal response;0.0286780785868206!GO:0003684;damaged DNA binding;0.0307848103228273!GO:0006470;protein amino acid dephosphorylation;0.0308136299451021!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0309909184166696!GO:0008092;cytoskeletal protein binding;0.0312107588329626!GO:0005819;spindle;0.0312107588329626!GO:0043022;ribosome binding;0.0315236458022167!GO:0032259;methylation;0.0318179205594718!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0320564235851587!GO:0050178;phenylpyruvate tautomerase activity;0.0321763848322967!GO:0035035;histone acetyltransferase binding;0.0321962783953192!GO:0007030;Golgi organization and biogenesis;0.0322514489896885!GO:0030119;AP-type membrane coat adaptor complex;0.0326106585601284!GO:0045603;positive regulation of endothelial cell differentiation;0.0330202321369553!GO:0006302;double-strand break repair;0.0332064030551009!GO:0051128;regulation of cellular component organization and biogenesis;0.0335145241690477!GO:0030911;TPR domain binding;0.0339709625523016!GO:0007243;protein kinase cascade;0.0340827036674482!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0341923749889408!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0342347859156171!GO:0030508;thiol-disulfide exchange intermediate activity;0.0342371356048418!GO:0006520;amino acid metabolic process;0.03464479467618!GO:0017134;fibroblast growth factor binding;0.0347113659894112!GO:0051052;regulation of DNA metabolic process;0.035068469463988!GO:0051539;4 iron, 4 sulfur cluster binding;0.0351525295654317!GO:0005795;Golgi stack;0.0352557795337902!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0353469847919615!GO:0006516;glycoprotein catabolic process;0.0353469847919615!GO:0016615;malate dehydrogenase activity;0.0355483911287242!GO:0000118;histone deacetylase complex;0.0364956541665646!GO:0048037;cofactor binding;0.0370861236810416!GO:0000339;RNA cap binding;0.0374613579001853!GO:0005802;trans-Golgi network;0.0379540634346443!GO:0051348;negative regulation of transferase activity;0.0383243734118028!GO:0006644;phospholipid metabolic process;0.0392714967271385!GO:0000790;nuclear chromatin;0.0399885169237743!GO:0018196;peptidyl-asparagine modification;0.0404542839440183!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0404542839440183!GO:0031625;ubiquitin protein ligase binding;0.0404579533598692!GO:0007040;lysosome organization and biogenesis;0.0406699152571154!GO:0030518;steroid hormone receptor signaling pathway;0.0407635475477218!GO:0006378;mRNA polyadenylation;0.0407635475477218!GO:0009451;RNA modification;0.0419927399111028!GO:0001726;ruffle;0.0422937861157393!GO:0008652;amino acid biosynthetic process;0.0428051738049652!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0428130153783032!GO:0008536;Ran GTPase binding;0.0431711982701634!GO:0005765;lysosomal membrane;0.043283876581639!GO:0030131;clathrin adaptor complex;0.043287279737613!GO:0004860;protein kinase inhibitor activity;0.0433734747558184!GO:0008538;proteasome activator activity;0.0436864378930234!GO:0019783;small conjugating protein-specific protease activity;0.0436864378930234!GO:0046483;heterocycle metabolic process;0.0438275552698835!GO:0000776;kinetochore;0.0443399312876474!GO:0007004;telomere maintenance via telomerase;0.0446246729514553!GO:0042158;lipoprotein biosynthetic process;0.0459005351697161!GO:0042147;retrograde transport, endosome to Golgi;0.0460445392727345!GO:0004348;glucosylceramidase activity;0.0462535221627408!GO:0008449;N-acetylglucosamine-6-sulfatase activity;0.0465288170882814!GO:0004680;casein kinase activity;0.0467762133502095!GO:0006509;membrane protein ectodomain proteolysis;0.0471124863861198!GO:0033619;membrane protein proteolysis;0.0471124863861198!GO:0006284;base-excision repair;0.0472932525311826!GO:0008097;5S rRNA binding;0.0491976742195569 | |||
|sample_id=10781 | |sample_id=10781 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=HIF1A:2.56163358125;LMO2:2.43753319621;HOX{A6,A7,B6,B7}:2.34594920313;ADNP_IRX_SIX_ZHX:2.20743591821;FOXA2:2.0483554624;DBP:2.02461475462;ARID5B:1.94431565825;SNAI1..3:1.90815241355;ATF6:1.87265273247;ZEB1:1.81972125482;ONECUT1,2:1.61390919923;BREu{core}:1.50360371128;ELK1,4_GABP{A,B1}:1.46546876475;NKX2-3_NKX2-5:1.36520090898;FOXQ1:1.34653504049;ATF5_CREB3:1.3160704198;VSX1,2:1.2976692647;SOX{8,9,10}:1.2567272126;POU6F1:1.25389408637;MYOD1:1.25080754996;EGR1..3:1.2175096194;FOXN1:1.1665301049;NANOG:1.11261675989;NKX6-1,2:1.10060662507;TFAP2B:1.07586693012;AHR_ARNT_ARNT2:1.06664299158;FOX{D1,D2}:1.02537334097;XBP1:1.02404640781;NKX2-1,4:1.01886536587;JUN:1.01002333452;POU1F1:1.00063073352;bHLH_family:0.948749343031;ALX1:0.922604364651;MED-1{core}:0.894868163222;FOX{F1,F2,J1}:0.878714344088;ZBTB16:0.863746268045;CRX:0.828836791222;PAX3,7:0.825671536292;SREBF1,2:0.774048409836;REST:0.768872020514;SOX17:0.751133535819;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.738554940034;ZBTB6:0.730924183787;HAND1,2:0.723119775937;PRRX1,2:0.697959018419;PATZ1:0.683870785957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.674259196215;ATF2:0.648522156377;AIRE:0.644191795316;RORA:0.611081480966;CREB1:0.605320649338;CEBPA,B_DDIT3:0.598898822645;HOX{A4,D4}:0.59842208434;ZNF143:0.576432551816;TEF:0.559383827709;ZNF423:0.517743311766;FOXD3:0.515156046883;ATF4:0.515132740908;MYFfamily:0.49852065922;MAFB:0.488269253066;SOX2:0.486813021844;MTF1:0.475824174717;RFX1:0.463799265383;ZFP161:0.460798624523;SOX5:0.443265023457;GFI1:0.438351021432;PAX8:0.432188374282;NFY{A,B,C}:0.429838070817;HMGA1,2:0.414461176264;NR5A1,2:0.399759395336;PAX5:0.38350496215;MTE{core}:0.365473348985;HIC1:0.354428544351;GATA6:0.3512812056;TFAP2{A,C}:0.345190467981;PPARG:0.345028475302;FOXM1:0.334346637077;LEF1_TCF7_TCF7L1,2:0.333762183516;PAX2:0.329282233753;NHLH1,2:0.329015301608;FOXL1:0.326913090082;HOXA9_MEIS1:0.32671250167;XCPE1{core}:0.317166637426;PDX1:0.311855376463;NRF1:0.289687024117;CDC5L:0.277658905895;CUX2:0.267260332332;PAX1,9:0.249986349865;TOPORS:0.242904378767;YY1:0.224173145191;HLF:0.200857497357;SP1:0.17724559887;POU2F1..3:0.145530311687;TFDP1:0.131818854288;PITX1..3:0.124189357402;ESRRA:0.121586552996;AR:0.0931358280188;FOXP3:0.0916487029412;TFCP2:0.0513700584375;NFE2L1:0.0322554540009;NFE2:0.0285106377924;MZF1:0.0206564633782;PBX1:0.0152428991012;IKZF2:0.0150602171488;FOSL2:0.0101907636232;STAT5{A,B}:0.00888786041146;ZIC1..3:-0.0123335796322;T:-0.0400806624982;NKX3-2:-0.0409896287976;POU5F1:-0.0436609503033;NKX3-1:-0.0515718347466;ELF1,2,4:-0.0545131871418;OCT4_SOX2{dimer}:-0.0610304869137;GTF2I:-0.0910359001678;GFI1B:-0.0976831972615;HNF1A:-0.110234706107;KLF4:-0.111110609863;FOXP1:-0.112478454577;GZF1:-0.112488667358;NFE2L2:-0.119046516151;PAX4:-0.1284143155;RFX2..5_RFXANK_RFXAP:-0.136277390064;CDX1,2,4:-0.148949641724;STAT1,3:-0.149243516909;NFIX:-0.160279151861;POU3F1..4:-0.169184240579;EVI1:-0.218752478815;FOX{I1,J2}:-0.225466962175;HNF4A_NR2F1,2:-0.233636490853;FOS_FOS{B,L1}_JUN{B,D}:-0.258974115124;TAL1_TCF{3,4,12}:-0.262244196344;BACH2:-0.28936739467;TBX4,5:-0.29320064186;E2F1..5:-0.317735497951;MEF2{A,B,C,D}:-0.340333195535;MAZ:-0.347133004708;FOXO1,3,4:-0.348355499727;MYB:-0.355361412881;ZNF148:-0.355541127123;LHX3,4:-0.366717263273;SPI1:-0.37745011063;GCM1,2:-0.379848605488;PRDM1:-0.383678477965;BPTF:-0.393736289279;TGIF1:-0.411832519344;TP53:-0.412560356475;EBF1:-0.42332700869;NR1H4:-0.428260091707;RREB1:-0.43594966242;EP300:-0.442706982945;RBPJ:-0.468864923351;PAX6:-0.47584619696;SPZ1:-0.520344568921;NR3C1:-0.54450922958;NFKB1_REL_RELA:-0.57427520461;GATA4:-0.579248578786;ETS1,2:-0.587441088014;NANOG{mouse}:-0.60312699991;DMAP1_NCOR{1,2}_SMARC:-0.624194373324;SPIB:-0.639023806247;HOX{A5,B5}:-0.659081925613;TLX1..3_NFIC{dimer}:-0.699754240908;RUNX1..3:-0.731672213824;UFEwm:-0.736097680967;NR6A1:-0.786037321678;NFIL3:-0.835058473711;SMAD1..7,9:-0.88951489151;MYBL2:-0.894186571865;NKX2-2,8:-0.897879498171;GTF2A1,2:-0.902868975141;IRF1,2:-0.903373525387;ZNF384:-0.924906126571;ESR1:-0.928630214414;IKZF1:-0.961727900475;TEAD1:-0.962654154628;TBP:-0.970300054556;EN1,2:-0.986338343739;IRF7:-0.989905177723;STAT2,4,6:-0.99294569502;ZNF238:-1.08321987522;HMX1:-1.08840500095;SRF:-1.11096311618;NFATC1..3:-1.2117657027;TFAP4:-1.22582582181;TLX2:-1.28548060644;RXRA_VDR{dimer}:-1.38602408852;ALX4:-1.39657009049;GLI1..3:-1.44315973951;RXR{A,B,G}:-1.56092495596;HSF1,2:-1.67886217871;HES1:-1.82519062181;HBP1_HMGB_SSRP1_UBTF:-1.9473455441 | |top_motifs=HIF1A:2.56163358125;LMO2:2.43753319621;HOX{A6,A7,B6,B7}:2.34594920313;ADNP_IRX_SIX_ZHX:2.20743591821;FOXA2:2.0483554624;DBP:2.02461475462;ARID5B:1.94431565825;SNAI1..3:1.90815241355;ATF6:1.87265273247;ZEB1:1.81972125482;ONECUT1,2:1.61390919923;BREu{core}:1.50360371128;ELK1,4_GABP{A,B1}:1.46546876475;NKX2-3_NKX2-5:1.36520090898;FOXQ1:1.34653504049;ATF5_CREB3:1.3160704198;VSX1,2:1.2976692647;SOX{8,9,10}:1.2567272126;POU6F1:1.25389408637;MYOD1:1.25080754996;EGR1..3:1.2175096194;FOXN1:1.1665301049;NANOG:1.11261675989;NKX6-1,2:1.10060662507;TFAP2B:1.07586693012;AHR_ARNT_ARNT2:1.06664299158;FOX{D1,D2}:1.02537334097;XBP1:1.02404640781;NKX2-1,4:1.01886536587;JUN:1.01002333452;POU1F1:1.00063073352;bHLH_family:0.948749343031;ALX1:0.922604364651;MED-1{core}:0.894868163222;FOX{F1,F2,J1}:0.878714344088;ZBTB16:0.863746268045;CRX:0.828836791222;PAX3,7:0.825671536292;SREBF1,2:0.774048409836;REST:0.768872020514;SOX17:0.751133535819;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.738554940034;ZBTB6:0.730924183787;HAND1,2:0.723119775937;PRRX1,2:0.697959018419;PATZ1:0.683870785957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.674259196215;ATF2:0.648522156377;AIRE:0.644191795316;RORA:0.611081480966;CREB1:0.605320649338;CEBPA,B_DDIT3:0.598898822645;HOX{A4,D4}:0.59842208434;ZNF143:0.576432551816;TEF:0.559383827709;ZNF423:0.517743311766;FOXD3:0.515156046883;ATF4:0.515132740908;MYFfamily:0.49852065922;MAFB:0.488269253066;SOX2:0.486813021844;MTF1:0.475824174717;RFX1:0.463799265383;ZFP161:0.460798624523;SOX5:0.443265023457;GFI1:0.438351021432;PAX8:0.432188374282;NFY{A,B,C}:0.429838070817;HMGA1,2:0.414461176264;NR5A1,2:0.399759395336;PAX5:0.38350496215;MTE{core}:0.365473348985;HIC1:0.354428544351;GATA6:0.3512812056;TFAP2{A,C}:0.345190467981;PPARG:0.345028475302;FOXM1:0.334346637077;LEF1_TCF7_TCF7L1,2:0.333762183516;PAX2:0.329282233753;NHLH1,2:0.329015301608;FOXL1:0.326913090082;HOXA9_MEIS1:0.32671250167;XCPE1{core}:0.317166637426;PDX1:0.311855376463;NRF1:0.289687024117;CDC5L:0.277658905895;CUX2:0.267260332332;PAX1,9:0.249986349865;TOPORS:0.242904378767;YY1:0.224173145191;HLF:0.200857497357;SP1:0.17724559887;POU2F1..3:0.145530311687;TFDP1:0.131818854288;PITX1..3:0.124189357402;ESRRA:0.121586552996;AR:0.0931358280188;FOXP3:0.0916487029412;TFCP2:0.0513700584375;NFE2L1:0.0322554540009;NFE2:0.0285106377924;MZF1:0.0206564633782;PBX1:0.0152428991012;IKZF2:0.0150602171488;FOSL2:0.0101907636232;STAT5{A,B}:0.00888786041146;ZIC1..3:-0.0123335796322;T:-0.0400806624982;NKX3-2:-0.0409896287976;POU5F1:-0.0436609503033;NKX3-1:-0.0515718347466;ELF1,2,4:-0.0545131871418;OCT4_SOX2{dimer}:-0.0610304869137;GTF2I:-0.0910359001678;GFI1B:-0.0976831972615;HNF1A:-0.110234706107;KLF4:-0.111110609863;FOXP1:-0.112478454577;GZF1:-0.112488667358;NFE2L2:-0.119046516151;PAX4:-0.1284143155;RFX2..5_RFXANK_RFXAP:-0.136277390064;CDX1,2,4:-0.148949641724;STAT1,3:-0.149243516909;NFIX:-0.160279151861;POU3F1..4:-0.169184240579;EVI1:-0.218752478815;FOX{I1,J2}:-0.225466962175;HNF4A_NR2F1,2:-0.233636490853;FOS_FOS{B,L1}_JUN{B,D}:-0.258974115124;TAL1_TCF{3,4,12}:-0.262244196344;BACH2:-0.28936739467;TBX4,5:-0.29320064186;E2F1..5:-0.317735497951;MEF2{A,B,C,D}:-0.340333195535;MAZ:-0.347133004708;FOXO1,3,4:-0.348355499727;MYB:-0.355361412881;ZNF148:-0.355541127123;LHX3,4:-0.366717263273;SPI1:-0.37745011063;GCM1,2:-0.379848605488;PRDM1:-0.383678477965;BPTF:-0.393736289279;TGIF1:-0.411832519344;TP53:-0.412560356475;EBF1:-0.42332700869;NR1H4:-0.428260091707;RREB1:-0.43594966242;EP300:-0.442706982945;RBPJ:-0.468864923351;PAX6:-0.47584619696;SPZ1:-0.520344568921;NR3C1:-0.54450922958;NFKB1_REL_RELA:-0.57427520461;GATA4:-0.579248578786;ETS1,2:-0.587441088014;NANOG{mouse}:-0.60312699991;DMAP1_NCOR{1,2}_SMARC:-0.624194373324;SPIB:-0.639023806247;HOX{A5,B5}:-0.659081925613;TLX1..3_NFIC{dimer}:-0.699754240908;RUNX1..3:-0.731672213824;UFEwm:-0.736097680967;NR6A1:-0.786037321678;NFIL3:-0.835058473711;SMAD1..7,9:-0.88951489151;MYBL2:-0.894186571865;NKX2-2,8:-0.897879498171;GTF2A1,2:-0.902868975141;IRF1,2:-0.903373525387;ZNF384:-0.924906126571;ESR1:-0.928630214414;IKZF1:-0.961727900475;TEAD1:-0.962654154628;TBP:-0.970300054556;EN1,2:-0.986338343739;IRF7:-0.989905177723;STAT2,4,6:-0.99294569502;ZNF238:-1.08321987522;HMX1:-1.08840500095;SRF:-1.11096311618;NFATC1..3:-1.2117657027;TFAP4:-1.22582582181;TLX2:-1.28548060644;RXRA_VDR{dimer}:-1.38602408852;ALX4:-1.39657009049;GLI1..3:-1.44315973951;RXR{A,B,G}:-1.56092495596;HSF1,2:-1.67886217871;HES1:-1.82519062181;HBP1_HMGB_SSRP1_UBTF:-1.9473455441 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10781-110G7;search_select_hide=table117:FF:10781-110G7 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | somatostatinoma cell line:QGP-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11869 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11869
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11869
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.244 |
| 10 | 10 | 0.121 |
| 100 | 100 | 0.442 |
| 101 | 101 | 0.604 |
| 102 | 102 | 0.159 |
| 103 | 103 | 0.00841 |
| 104 | 104 | 0.467 |
| 105 | 105 | 0.948 |
| 106 | 106 | 0.131 |
| 107 | 107 | 0.271 |
| 108 | 108 | 0.408 |
| 109 | 109 | 0.0439 |
| 11 | 11 | 0.109 |
| 110 | 110 | 0.12 |
| 111 | 111 | 0.5 |
| 112 | 112 | 0.169 |
| 113 | 113 | 0.575 |
| 114 | 114 | 0.0544 |
| 115 | 115 | 0.825 |
| 116 | 116 | 0.436 |
| 117 | 117 | 0.0854 |
| 118 | 118 | 0.129 |
| 119 | 119 | 0.0957 |
| 12 | 12 | 0.585 |
| 120 | 120 | 0.551 |
| 121 | 121 | 0.0618 |
| 122 | 122 | 0.309 |
| 123 | 123 | 0.617 |
| 124 | 124 | 0.943 |
| 125 | 125 | 0.315 |
| 126 | 126 | 0.285 |
| 127 | 127 | 0.476 |
| 128 | 128 | 0.394 |
| 129 | 129 | 0.569 |
| 13 | 13 | 0.0732 |
| 130 | 130 | 0.553 |
| 131 | 131 | 0.586 |
| 132 | 132 | 0.757 |
| 133 | 133 | 0.99 |
| 134 | 134 | 0.801 |
| 135 | 135 | 0.0249 |
| 136 | 136 | 0.9 |
| 137 | 137 | 0.0161 |
| 138 | 138 | 0.866 |
| 139 | 139 | 0.923 |
| 14 | 14 | 0.568 |
| 140 | 140 | 0.896 |
| 141 | 141 | 0.381 |
| 142 | 142 | 0.337 |
| 143 | 143 | 0.0332 |
| 144 | 144 | 0.147 |
| 145 | 145 | 0.0446 |
| 146 | 146 | 0.506 |
| 147 | 147 | 0.492 |
| 148 | 148 | 0.0744 |
| 149 | 149 | 0.123 |
| 15 | 15 | 0.369 |
| 150 | 150 | 0.344 |
| 151 | 151 | 0.336 |
| 152 | 152 | 0.38 |
| 153 | 153 | 0.294 |
| 154 | 154 | 0.868 |
| 155 | 155 | 0.741 |
| 156 | 156 | 0.715 |
| 157 | 157 | 0.439 |
| 158 | 158 | 0.411 |
| 159 | 159 | 0.7 |
| 16 | 16 | 0.209 |
| 160 | 160 | 0.00483 |
| 161 | 161 | 0.0462 |
| 162 | 162 | 0.891 |
| 163 | 163 | 0.878 |
| 164 | 164 | 0.0777 |
| 165 | 165 | 0.219 |
| 166 | 166 | 0.0158 |
| 167 | 167 | 0.367 |
| 168 | 168 | 0.0187 |
| 169 | 169 | 0.0531 |
| 17 | 17 | 0.248 |
| 18 | 18 | 0.715 |
| 19 | 19 | 0.0742 |
| 2 | 2 | 0.699 |
| 20 | 20 | 0.915 |
| 21 | 21 | 0.0476 |
| 22 | 22 | 0.134 |
| 23 | 23 | 0.159 |
| 24 | 24 | 0.0646 |
| 25 | 25 | 0.493 |
| 26 | 26 | 0.271 |
| 27 | 27 | 0.396 |
| 28 | 28 | 0.608 |
| 29 | 29 | 0.14 |
| 3 | 3 | 0.0412 |
| 30 | 30 | 0.777 |
| 31 | 31 | 0.799 |
| 32 | 32 | 0.00576 |
| 33 | 33 | 0.15 |
| 34 | 34 | 0.135 |
| 35 | 35 | 0.196 |
| 36 | 36 | 0.099 |
| 37 | 37 | 0.0902 |
| 38 | 38 | 0.37 |
| 39 | 39 | 0.0409 |
| 4 | 4 | 0.849 |
| 40 | 40 | 0.0727 |
| 41 | 41 | 0.199 |
| 42 | 42 | 0.247 |
| 43 | 43 | 0.0728 |
| 44 | 44 | 0.494 |
| 45 | 45 | 0.69 |
| 46 | 46 | 0.32 |
| 47 | 47 | 0.283 |
| 48 | 48 | 0.232 |
| 49 | 49 | 0.149 |
| 5 | 5 | 0.324 |
| 50 | 50 | 0.401 |
| 51 | 51 | 0.4 |
| 52 | 52 | 0.588 |
| 53 | 53 | 0.433 |
| 54 | 54 | 0.782 |
| 55 | 55 | 0.752 |
| 56 | 56 | 0.87 |
| 57 | 57 | 0.524 |
| 58 | 58 | 0.365 |
| 59 | 59 | 0.0147 |
| 6 | 6 | 0.648 |
| 60 | 60 | 0.232 |
| 61 | 61 | 0.407 |
| 62 | 62 | 0.1 |
| 63 | 63 | 0.11 |
| 64 | 64 | 0.785 |
| 65 | 65 | 0.233 |
| 66 | 66 | 0.481 |
| 67 | 67 | 0.709 |
| 68 | 68 | 0.872 |
| 69 | 69 | 0.577 |
| 7 | 7 | 0.615 |
| 70 | 70 | 0.0255 |
| 71 | 71 | 0.0561 |
| 72 | 72 | 0.195 |
| 73 | 73 | 0.248 |
| 74 | 74 | 0.182 |
| 75 | 75 | 0.226 |
| 76 | 76 | 0.807 |
| 77 | 77 | 0.0536 |
| 78 | 78 | 0.432 |
| 79 | 79 | 0.0255 |
| 8 | 8 | 0.081 |
| 80 | 80 | 0.0349 |
| 81 | 81 | 0.127 |
| 82 | 82 | 0.0264 |
| 83 | 83 | 0.165 |
| 84 | 84 | 0.406 |
| 85 | 85 | 0.211 |
| 86 | 86 | 0.542 |
| 87 | 87 | 0.75 |
| 88 | 88 | 0.409 |
| 89 | 89 | 0.126 |
| 9 | 9 | 0.143 |
| 90 | 90 | 0.541 |
| 91 | 91 | 0.176 |
| 92 | 92 | 0.52 |
| 93 | 93 | 0.782 |
| 94 | 94 | 0.387 |
| 95 | 95 | 0.136 |
| 96 | 96 | 0.127 |
| 97 | 97 | 0.808 |
| 98 | 98 | 0.714 |
| 99 | 99 | 0.586 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11869
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000173 pancreatic D cell
DOID:4430 somatostatinoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000167 (peptide hormone secreting cell)
0000164 (enteroendocrine cell)
0000502 (type D enteroendocrine cell)
0000172 (somatostatin secreting cell)
0000255 (eukaryotic cell)
0000173 (pancreatic D cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
4430 (somatostatinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002351 (progenitor cell of endocrine pancreas)
