FF:10782-110G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005621 | ||
|accession_numbers=CAGE;DRX007920;DRR008792;DRZ000217;DRZ001602;DRZ011567;DRZ012952 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0103744 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100400 | |fonse_cell_line=FF:0100400 | ||
|fonse_cell_line_closure=FF:0100400 | |fonse_cell_line_closure=FF:0100400 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10782-110G8 | |id=FF:10782-110G8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103744 | ||
|is_obsolete= | |||
|library_id=CNhs11870 | |||
|library_id_phase_based=2:CNhs11870 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10782 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10782 | |||
|name=liposarcoma cell line:KMLS-1 | |name=liposarcoma cell line:KMLS-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11870,LSID830,release010,COMPLETED | |profile_hcage=CNhs11870,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0341649341991287,0,0.275469904121696,0,0,0.0653922943194612,0,0.167099661296879,0.379531407883949,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187659405468457,0,0,0.0341649341991287,0,0,0.529138738656737,0,0,0.172895033185389,0,0,0,0,0,0,0,0,0,0,0,0,0.183514936776891,0.177488249166793,0,0,0,0,0,0,0,0.0099499130862943,0,0,0,0,0,0.0525339582906389,0,0.386545907091482,0,0,0.030012614349106,0,0,0,0,0,0,0,0,0.127356241562203,0,0,0,0,0.0683298683982573,0,0,0,0.0876541155737092,0.0636781207811015,0,0.0931706279653312,0,0,0,0.292227334075901,0.152925811482126,0,0,-0.205679546965597,-0.113354347715639,0.0341649341991287,0.225710324405847,0.0636781207811015,0,0.0812762665168361,0.271135998364708,0,0,0.000153570923712106,0.0683298683982573,0,0,0,0,0,0,0.0978430549802301,0,0,0,0,0,0,0.074117613985981,0,0,0,0.101415854876647,0.270426421906507,0,0,0.127356241562203,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0683298683982573,0,0.0812762665168361,0,0,0,0,0.127356241562203,0,0.305851622964251,0,0.225710324405847,0,0,0.126303992059536,0.0364627467976441,-0.206459281105364,0.0357964752310706,0.0636781207811015,0,0.242176116955705,0,0.305851622964251,0,0.0172771484467329,0.0683298683982573,0,0,0.127356241562203,0,0.0511917508019778,0,0.128899066165228,0.0636781207811015,0,0,0,0.0341649341991287,-0.305472230898407,0,0.055005586852453,0.157366063328479,0,0,0,0,0.0707417464825601,0,-0.0525496153954834,0.14299015608243,0.0683298683982573,0.184426807527216,-0.04680465889238,0,0,0,-0.199899347118789,-0.0170535101210836,0,0,0.131813627830269,-0.057528875484259,0,0,1.40372004172589,0,0.0532677211568647,0.321743604113219,0,0.0811554852160934,0,0,0,0,0,0.179311617754543,0,0,0,0,0,0.0895266295806156,0.282283909037267,0.0534820232754499,0,0,0.0066680935115131,0.249966109067231,0,0.048551460727824,0.0587012924531249,0.239949408352283,0.0824819809151391,-0.114472774282313,0,-0.123078109255371,-0.172242783939658,-0.245948505434147,-0.091915497652499,0.284585599038553,0.242005728859844,0.0242778815418295,0.292227334075901,0.0670585755733952,-0.0255689080480921,-0.0930107508227074,-0.00374394970866671,0.27156771444901,-0.200922643342663,0,0,0.0671129162215177,-0.0584846665307976,0,-0.25780405978011,0.186445064219597,-0.0177159805555805,0.055919869827408,-0.264952440739838,0.00164220503625456,0.0872523825561604,-0.0053675942575419,-0.0839535855514938,0.0230370984356994,0.417172989027724,0,0,0,0.0800542901099462,-0.278725147943037,-0.436514555424137,0.0723642749517102,-0.0802578909421266,0.272638154739516,0.050834308470988,0.0869306938359882,0.00833218493345633,0.127356241562203,0.195609265159962,0.156029682252283,0.0683298683982573,0,0,0.0178744308077285,0.0683298683982573,0.0454452873660811,0.121197728581622,-0.105499319993342,0,-0.0044891763609507,0,-0.233607959571485,0,-0.109137760274431,-0.147661473483588,-0.0228886591445606,-0.224303936197979,0,-0.0506790179590471,0.166920110681965,0.0208016482685378,-0.295038563829535,0.4000804691921,-0.179532125532339,0.0398443343310837,-0.208385046925968,0.569179076209439,0.00304854496878947,0.905757884405561,0,0.334078934610447,0.106659679462676,-0.0247887328070209,0.356467604454329,0.0683298683982573,0.112692803288214,0,-0.0592821872819861,0,0.142945725854711,-0.166950884128139,-0.133437751616435,-0.0712547005760908,0,0.118187950844664,-0.788130937773974,0.0683298683982573,-0.0673932754485248,0,0,0.308160212669286,0.303629436759222,-0.211650427864589,-0.104824522480066,0,0.31566068629731,0,0,0.192002226236692,0.105506378052496,0.0683298683982573,-4.7630208769401e-05,0.0974562064932355,0.0876541155737092,0.0113851681272689,0.127356241562203,0,-0.241980767123871,-0.00127828662458085,0.127356241562203,-0.0346609292795163,0.440390167752196,0.366531001193153,-0.125970099924553,0,0.0679104735297696,0,0,-0.0501715244029727,0.127356241562203,0.447504730517121,0,0,0.212846781419905,0,0,0,0.0683298683982573,0,0.0683298683982573,0,0,0,0,0,0,-0.0287891912856888,0.0488862406524061,0,-0.041587410351958,0,0,0,0.946346577210187,0.0683298683982573,0,0,0.0683298683982573,0.557594096665115,0.0380687502476345,0.0562942020781222,0,0,0,0,0.12525901326341,0.20048300877413,0,-0.00450646493542875,0,0,0,0,0.0931706279653312,0,0,0.0341649341991287,0.0341649341991287,0.0105994113445933,0.0983211900492478,0,0,0,0.414915755167213,0,0,0.267626937646644,0.0455776239812584,-0.119365809896845,0,0.0152286163830146,1.2564393671096,0,-0.227943236881118,-0.0132520111485842,0,-0.0834572049685856,-0.131964810427091,0.125582862134495,0,0,-0.0356368073840402,0,0.0341649341991287,-0.0346189183614429,0,0.127356241562203,0.0687310329311545,0,0,0,0,0,0.127356241562203,-0.145984644001498,0.0341649341991287,0,0,0,0.0683298683982573,0,0,0,0,0,0,0.131040173309506,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.025617142235317,0.0101140219408839,0,0.0341649341991287,0,0,0.127356241562203,0,0,0.289814945800645,0.0978430549802301,0,0.0683298683982573,0,0,0.386545907091482,0,0,0,0.0683298683982573,0.579751198013356,0,0,0.028489490770737,0,0,0,0,0,0,0.000657578651646685,0,0,0,0,0,0,0.00403715552675522,0.167099661296879,0,0.0683298683982573,0,0,0,0,0,0.296433836332424,0,0.179311617754543,0,0,-0.0455545053107199,0.550939808243393,0,0,0.120913939616691,0,0.0653922943194612,0,0,0,0,0,0,0.0341649341991287,0,0,0,0,0,0,0,0,0,0,0.0341649341991287,0,0,0,0.559709422661538,0.187587394064957,0.196330752361177,0.00558428976374081,0,0,0.160450552909058,0,0,0,0,0,0,0.00282451017060157,0,0,0,0,0,0,0,0.0341649341991287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636781207811015,0.0282878813923565,0,0,0,0,0.691870156769004,0,0,0.529138738656737,0,0,-0.0237029414022688,0,0,0,0,0.351777804946951,0,0.0178747823075415,0.401463124683736,0.0553089292192128,0,0,0,0.116105635425987,0,0,0.0437361262192478,0,0.00155248097935592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187659405468457,0,0,0,0,0,0,0,0,0,0,0.03416493419912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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=32.77017 | |rna_weight_ug=32.77017 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0200 | |sample_cell_catalog=jcrb0200 | ||
|sample_cell_line=KMLS-1 | |sample_cell_line=KMLS-1 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.41187458764461e-229!GO:0043226;organelle;5.77785724880232e-190!GO:0043229;intracellular organelle;1.33592841206417e-189!GO:0043231;intracellular membrane-bound organelle;3.16540150152024e-188!GO:0043227;membrane-bound organelle;5.85878666123701e-188!GO:0005737;cytoplasm;1.09560281125281e-174!GO:0044444;cytoplasmic part;1.1662619444338e-136!GO:0044422;organelle part;1.36149576451423e-130!GO:0044446;intracellular organelle part;4.79920171725761e-129!GO:0032991;macromolecular complex;5.61556995714794e-89!GO:0044238;primary metabolic process;1.8860845071114e-84!GO:0044237;cellular metabolic process;3.6230485948984e-84!GO:0043170;macromolecule metabolic process;5.62198140908098e-83!GO:0030529;ribonucleoprotein complex;1.78468214193938e-76!GO:0005634;nucleus;1.1251171716599e-68!GO:0043233;organelle lumen;3.27165423382908e-68!GO:0031974;membrane-enclosed lumen;3.27165423382908e-68!GO:0005515;protein binding;3.34288775789982e-65!GO:0003723;RNA binding;1.31890261237699e-62!GO:0044428;nuclear part;2.81007812029003e-62!GO:0005739;mitochondrion;9.68544297454266e-62!GO:0031090;organelle membrane;1.58291135149849e-52!GO:0019538;protein metabolic process;1.75546033085107e-48!GO:0005840;ribosome;4.11023412185791e-47!GO:0043283;biopolymer metabolic process;8.98144449256649e-46!GO:0043234;protein complex;3.57734869672271e-45!GO:0016043;cellular component organization and biogenesis;7.05668351691729e-45!GO:0015031;protein transport;8.02960331935708e-45!GO:0033036;macromolecule localization;5.89300517662209e-44!GO:0006396;RNA processing;2.33763443912798e-43!GO:0044260;cellular macromolecule metabolic process;3.460552126692e-43!GO:0006412;translation;8.63437960999763e-43!GO:0044267;cellular protein metabolic process;2.62737685828788e-42!GO:0044429;mitochondrial part;5.93959537338673e-42!GO:0045184;establishment of protein localization;3.70905137635831e-41!GO:0010467;gene expression;7.07785356436479e-41!GO:0008104;protein localization;1.41297813512563e-40!GO:0003735;structural constituent of ribosome;1.63327396761036e-40!GO:0031981;nuclear lumen;9.42155501238308e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.54298746482567e-38!GO:0031967;organelle envelope;2.8088800974705e-37!GO:0031975;envelope;4.78239996662434e-37!GO:0046907;intracellular transport;5.64232401139038e-36!GO:0005829;cytosol;1.48853401609222e-35!GO:0033279;ribosomal subunit;3.91183394594106e-35!GO:0009059;macromolecule biosynthetic process;3.91183394594106e-35!GO:0009058;biosynthetic process;4.22521678829361e-35!GO:0016071;mRNA metabolic process;1.7995905458051e-34!GO:0044249;cellular biosynthetic process;6.68942114310069e-32!GO:0008380;RNA splicing;8.85445228764592e-32!GO:0006397;mRNA processing;1.11750409186829e-29!GO:0006886;intracellular protein transport;3.87549249755681e-29!GO:0006996;organelle organization and biogenesis;4.29904766655924e-27!GO:0005740;mitochondrial envelope;4.29904766655924e-27!GO:0065003;macromolecular complex assembly;6.13083689272338e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.54276664355185e-25!GO:0031966;mitochondrial membrane;1.60482021693062e-25!GO:0005654;nucleoplasm;9.31215862258042e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.48827199628521e-24!GO:0019866;organelle inner membrane;2.98451224904437e-24!GO:0043228;non-membrane-bound organelle;4.96630944668009e-24!GO:0043232;intracellular non-membrane-bound organelle;4.96630944668009e-24!GO:0003676;nucleic acid binding;1.04121241870297e-23!GO:0051649;establishment of cellular localization;7.0490468371133e-23!GO:0051641;cellular localization;8.76697316795051e-23!GO:0022607;cellular component assembly;1.30801642126533e-22!GO:0005743;mitochondrial inner membrane;1.30801642126533e-22!GO:0006119;oxidative phosphorylation;1.43891579689818e-22!GO:0012505;endomembrane system;8.95623075700529e-22!GO:0044445;cytosolic part;1.50532042421475e-21!GO:0005681;spliceosome;1.50532042421475e-21!GO:0005783;endoplasmic reticulum;2.86364355489669e-21!GO:0006259;DNA metabolic process;4.46344048537785e-21!GO:0044455;mitochondrial membrane part;9.90348332296194e-21!GO:0006457;protein folding;1.31302560982691e-20!GO:0000166;nucleotide binding;9.08578150605104e-20!GO:0044451;nucleoplasm part;1.74908386646944e-19!GO:0016070;RNA metabolic process;3.83926331562498e-19!GO:0048770;pigment granule;1.7472924962268e-18!GO:0042470;melanosome;1.7472924962268e-18!GO:0005794;Golgi apparatus;1.96784383772398e-18!GO:0015934;large ribosomal subunit;3.10926642940928e-18!GO:0015935;small ribosomal subunit;6.74848843090602e-18!GO:0044432;endoplasmic reticulum part;1.35557897976895e-17!GO:0031980;mitochondrial lumen;1.61418757746046e-17!GO:0005759;mitochondrial matrix;1.61418757746046e-17!GO:0006512;ubiquitin cycle;3.84443852838643e-17!GO:0007049;cell cycle;5.1820885201577e-17!GO:0016462;pyrophosphatase activity;7.01400090458555e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.20337773079686e-17!GO:0005746;mitochondrial respiratory chain;9.39337656326178e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;9.55282857005283e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20097639965712e-16!GO:0017111;nucleoside-triphosphatase activity;1.21686982503368e-16!GO:0008134;transcription factor binding;1.96016516079322e-16!GO:0016874;ligase activity;3.4600273165142e-16!GO:0048193;Golgi vesicle transport;4.27172593293262e-16!GO:0022618;protein-RNA complex assembly;4.57914062547183e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.45902069936762e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.0898866371399e-15!GO:0003954;NADH dehydrogenase activity;1.0898866371399e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0898866371399e-15!GO:0044265;cellular macromolecule catabolic process;1.97239188164363e-15!GO:0016192;vesicle-mediated transport;2.25998971365908e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.30551593463428e-15!GO:0043285;biopolymer catabolic process;8.62377861966544e-15!GO:0005730;nucleolus;1.31918937302629e-14!GO:0044257;cellular protein catabolic process;1.33047249349534e-14!GO:0019941;modification-dependent protein catabolic process;1.65198672589744e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.65198672589744e-14!GO:0006974;response to DNA damage stimulus;2.53385285021083e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.14266284602877e-14!GO:0008135;translation factor activity, nucleic acid binding;3.41584595351736e-14!GO:0009057;macromolecule catabolic process;3.68536063096019e-14!GO:0051082;unfolded protein binding;3.85240654577562e-14!GO:0006605;protein targeting;4.61812232775409e-14!GO:0032553;ribonucleotide binding;5.22915147851128e-14!GO:0032555;purine ribonucleotide binding;5.22915147851128e-14!GO:0043412;biopolymer modification;7.97298838508029e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.02351078590375e-14!GO:0045271;respiratory chain complex I;9.02351078590375e-14!GO:0005747;mitochondrial respiratory chain complex I;9.02351078590375e-14!GO:0005793;ER-Golgi intermediate compartment;9.48279351965827e-14!GO:0051186;cofactor metabolic process;1.08572106655844e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.1250610815227e-13!GO:0042773;ATP synthesis coupled electron transport;1.1250610815227e-13!GO:0005761;mitochondrial ribosome;1.65044876271117e-13!GO:0000313;organellar ribosome;1.65044876271117e-13!GO:0017076;purine nucleotide binding;2.09990468974868e-13!GO:0030163;protein catabolic process;2.69040538522184e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.83860107357318e-13!GO:0044248;cellular catabolic process;2.93849208508927e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.75096932892367e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.64121424306203e-13!GO:0022402;cell cycle process;1.46420064223291e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.03324114567693e-12!GO:0006464;protein modification process;2.94523443407866e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.58740235168435e-12!GO:0005524;ATP binding;4.84417758203766e-12!GO:0005789;endoplasmic reticulum membrane;1.22038585208112e-11!GO:0000278;mitotic cell cycle;1.49594599349474e-11!GO:0032559;adenyl ribonucleotide binding;1.52538906845277e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.90401755130524e-11!GO:0000375;RNA splicing, via transesterification reactions;3.90401755130524e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.90401755130524e-11!GO:0006281;DNA repair;4.10459931131073e-11!GO:0006732;coenzyme metabolic process;5.642902523538e-11!GO:0005635;nuclear envelope;6.0244321904052e-11!GO:0003743;translation initiation factor activity;6.60311920444454e-11!GO:0030554;adenyl nucleotide binding;8.39310085368365e-11!GO:0031965;nuclear membrane;1.56808306296574e-10!GO:0003712;transcription cofactor activity;1.98249761443668e-10!GO:0009259;ribonucleotide metabolic process;2.21392744538366e-10!GO:0043687;post-translational protein modification;2.301169534235e-10!GO:0006413;translational initiation;2.39228814455509e-10!GO:0006163;purine nucleotide metabolic process;2.57174962649858e-10!GO:0009055;electron carrier activity;2.67194902102212e-10!GO:0008639;small protein conjugating enzyme activity;4.18959639256432e-10!GO:0019787;small conjugating protein ligase activity;5.53312348365242e-10!GO:0009150;purine ribonucleotide metabolic process;5.71042166246528e-10!GO:0006446;regulation of translational initiation;7.52543690532084e-10!GO:0004842;ubiquitin-protein ligase activity;7.73577569199199e-10!GO:0000074;regulation of progression through cell cycle;9.20380473662806e-10!GO:0051726;regulation of cell cycle;9.96578985471783e-10!GO:0016604;nuclear body;1.12736955233619e-09!GO:0009719;response to endogenous stimulus;1.24343252757866e-09!GO:0006164;purine nucleotide biosynthetic process;1.48406154055947e-09!GO:0006913;nucleocytoplasmic transport;1.50002487349579e-09!GO:0012501;programmed cell death;1.84384184651477e-09!GO:0005768;endosome;2.08021080357841e-09!GO:0042254;ribosome biogenesis and assembly;2.46560029490554e-09!GO:0051169;nuclear transport;3.14490928911427e-09!GO:0006399;tRNA metabolic process;3.15784629753774e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.17963329100544e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.21689457781235e-09!GO:0006915;apoptosis;3.93869055451788e-09!GO:0016887;ATPase activity;4.03707212209886e-09!GO:0009260;ribonucleotide biosynthetic process;4.28728903566075e-09!GO:0042623;ATPase activity, coupled;4.35761909749089e-09!GO:0044453;nuclear membrane part;4.35761909749089e-09!GO:0030120;vesicle coat;5.21877301260135e-09!GO:0030662;coated vesicle membrane;5.21877301260135e-09!GO:0005788;endoplasmic reticulum lumen;5.35081132206707e-09!GO:0050794;regulation of cellular process;5.57148037143303e-09!GO:0008565;protein transporter activity;5.75788772876472e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.05499644069674e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.72335749235461e-09!GO:0016881;acid-amino acid ligase activity;1.09805045732029e-08!GO:0048523;negative regulation of cellular process;1.12574858700283e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.15290619147995e-08!GO:0044431;Golgi apparatus part;1.28108722153734e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.32545765529289e-08!GO:0006366;transcription from RNA polymerase II promoter;1.42815153439682e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.63566197797454e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.63566197797454e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.73911370075077e-08!GO:0051276;chromosome organization and biogenesis;1.80485065464277e-08!GO:0008219;cell death;1.8848857206492e-08!GO:0016265;death;1.8848857206492e-08!GO:0009141;nucleoside triphosphate metabolic process;2.12391807691591e-08!GO:0015986;ATP synthesis coupled proton transport;2.69858242605702e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.69858242605702e-08!GO:0017038;protein import;3.47373185287312e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.71528868457506e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.71528868457506e-08!GO:0016607;nuclear speck;4.02240481821787e-08!GO:0048475;coated membrane;4.78648989529014e-08!GO:0030117;membrane coat;4.78648989529014e-08!GO:0006323;DNA packaging;4.87840479843184e-08!GO:0004386;helicase activity;5.13298722095975e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.21042402906991e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.21042402906991e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.55736708139073e-08!GO:0005773;vacuole;6.33293479653806e-08!GO:0006461;protein complex assembly;7.65853338418654e-08!GO:0009060;aerobic respiration;7.76618328417717e-08!GO:0000087;M phase of mitotic cell cycle;9.30007102088997e-08!GO:0009056;catabolic process;1.16357907487248e-07!GO:0046034;ATP metabolic process;1.33934724301401e-07!GO:0007067;mitosis;1.40742232762758e-07!GO:0006260;DNA replication;1.97012816549798e-07!GO:0019829;cation-transporting ATPase activity;2.17585470203334e-07!GO:0065002;intracellular protein transport across a membrane;2.25364591939692e-07!GO:0051188;cofactor biosynthetic process;2.51020728084986e-07!GO:0008026;ATP-dependent helicase activity;2.98844763977425e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.15206392686422e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.15206392686422e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.15206392686422e-07!GO:0006754;ATP biosynthetic process;3.66882182261449e-07!GO:0006753;nucleoside phosphate metabolic process;3.66882182261449e-07!GO:0045333;cellular respiration;4.17530274069861e-07!GO:0048519;negative regulation of biological process;4.17530274069861e-07!GO:0007005;mitochondrion organization and biogenesis;4.24901637014586e-07!GO:0022403;cell cycle phase;4.4139977946105e-07!GO:0043038;amino acid activation;5.41850138535494e-07!GO:0006418;tRNA aminoacylation for protein translation;5.41850138535494e-07!GO:0043039;tRNA aminoacylation;5.41850138535494e-07!GO:0000323;lytic vacuole;5.42677398952442e-07!GO:0005764;lysosome;5.42677398952442e-07!GO:0051301;cell division;5.43593912415444e-07!GO:0016740;transferase activity;6.62139935719159e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.77240463540528e-07!GO:0032446;protein modification by small protein conjugation;7.52938572223541e-07!GO:0044440;endosomal part;7.54750608211538e-07!GO:0010008;endosome membrane;7.54750608211538e-07!GO:0043566;structure-specific DNA binding;9.45327106288834e-07!GO:0009117;nucleotide metabolic process;1.03062155270523e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.21352451885541e-06!GO:0005643;nuclear pore;1.25229663811316e-06!GO:0005694;chromosome;1.32834091341705e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.33918612687922e-06!GO:0015630;microtubule cytoskeleton;1.33918612687922e-06!GO:0000139;Golgi membrane;1.34954762404062e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.35504322554046e-06!GO:0016567;protein ubiquitination;1.44121709511958e-06!GO:0031324;negative regulation of cellular metabolic process;1.44598835690776e-06!GO:0000151;ubiquitin ligase complex;1.52181493736969e-06!GO:0016853;isomerase activity;1.74409396102859e-06!GO:0005798;Golgi-associated vesicle;1.87927770834535e-06!GO:0005770;late endosome;1.88125288917931e-06!GO:0006099;tricarboxylic acid cycle;1.97547235617767e-06!GO:0046356;acetyl-CoA catabolic process;1.97547235617767e-06!GO:0006403;RNA localization;2.28259370799321e-06!GO:0050657;nucleic acid transport;2.64148230327853e-06!GO:0051236;establishment of RNA localization;2.64148230327853e-06!GO:0050658;RNA transport;2.64148230327853e-06!GO:0045786;negative regulation of progression through cell cycle;2.65252011420031e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.73615199348398e-06!GO:0003697;single-stranded DNA binding;3.17948635874869e-06!GO:0016568;chromatin modification;3.19815936809697e-06!GO:0045259;proton-transporting ATP synthase complex;3.28458087760086e-06!GO:0051246;regulation of protein metabolic process;3.41777058304204e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.45733685146224e-06!GO:0016564;transcription repressor activity;3.48121071568138e-06!GO:0003924;GTPase activity;3.65067273470277e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.06430363397471e-06!GO:0003714;transcription corepressor activity;4.14364633080886e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.25710957043537e-06!GO:0043067;regulation of programmed cell death;4.65699654590112e-06!GO:0006793;phosphorus metabolic process;4.9835280152272e-06!GO:0006796;phosphate metabolic process;4.9835280152272e-06!GO:0016859;cis-trans isomerase activity;5.35492804711799e-06!GO:0006084;acetyl-CoA metabolic process;5.56858365417935e-06!GO:0042981;regulation of apoptosis;5.6488564099092e-06!GO:0009108;coenzyme biosynthetic process;5.96716789940657e-06!GO:0006364;rRNA processing;6.59145799547643e-06!GO:0016787;hydrolase activity;6.60584191815675e-06!GO:0065004;protein-DNA complex assembly;6.91421728015498e-06!GO:0004298;threonine endopeptidase activity;6.94340445277737e-06!GO:0050789;regulation of biological process;7.31363634982999e-06!GO:0000245;spliceosome assembly;7.64949657038318e-06!GO:0006916;anti-apoptosis;7.89458257567664e-06!GO:0043069;negative regulation of programmed cell death;8.53755247098559e-06!GO:0044427;chromosomal part;9.35827565455695e-06!GO:0008654;phospholipid biosynthetic process;9.81235462659267e-06!GO:0051187;cofactor catabolic process;1.11110761449587e-05!GO:0016072;rRNA metabolic process;1.1234272673685e-05!GO:0009109;coenzyme catabolic process;1.15554815862192e-05!GO:0005667;transcription factor complex;1.20890890266998e-05!GO:0016491;oxidoreductase activity;1.21385162814217e-05!GO:0031988;membrane-bound vesicle;1.28482011365232e-05!GO:0006613;cotranslational protein targeting to membrane;1.29827042015063e-05!GO:0046930;pore complex;1.33382164658722e-05!GO:0031252;leading edge;1.40673550209037e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.49254973182266e-05!GO:0009892;negative regulation of metabolic process;1.85318466642597e-05!GO:0043066;negative regulation of apoptosis;1.85524207478946e-05!GO:0006752;group transfer coenzyme metabolic process;1.89430677325469e-05!GO:0019222;regulation of metabolic process;1.90094547207379e-05!GO:0051170;nuclear import;1.90094547207379e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.05658766578981e-05!GO:0008361;regulation of cell size;2.12786988972713e-05!GO:0031982;vesicle;2.14540956568014e-05!GO:0030867;rough endoplasmic reticulum membrane;2.23142129524247e-05!GO:0006606;protein import into nucleus;2.2959431951975e-05!GO:0006333;chromatin assembly or disassembly;2.35052476559109e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.66375059042338e-05!GO:0031410;cytoplasmic vesicle;2.67674906547106e-05!GO:0005813;centrosome;3.07488538761531e-05!GO:0016049;cell growth;3.17483577911876e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19722809740287e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.20425763138238e-05!GO:0016779;nucleotidyltransferase activity;3.37280789964446e-05!GO:0005762;mitochondrial large ribosomal subunit;3.48647124917517e-05!GO:0000315;organellar large ribosomal subunit;3.48647124917517e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.05534366897219e-05!GO:0016563;transcription activator activity;4.21238300429454e-05!GO:0016310;phosphorylation;4.25626926798041e-05!GO:0001558;regulation of cell growth;4.27303858888318e-05!GO:0005769;early endosome;4.700482103612e-05!GO:0051028;mRNA transport;4.86471887109148e-05!GO:0051427;hormone receptor binding;4.94872127839184e-05!GO:0003724;RNA helicase activity;5.06160114076964e-05!GO:0000279;M phase;5.5254573237386e-05!GO:0051789;response to protein stimulus;6.02728207828192e-05!GO:0006986;response to unfolded protein;6.02728207828192e-05!GO:0005815;microtubule organizing center;6.10197081075015e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.42148410562157e-05!GO:0016481;negative regulation of transcription;6.55596225297872e-05!GO:0005905;coated pit;7.43235242243487e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.69522789770081e-05!GO:0031968;organelle outer membrane;8.09787145032634e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.57011462217073e-05!GO:0035257;nuclear hormone receptor binding;0.000100963306532583!GO:0019867;outer membrane;0.000101155760402787!GO:0043021;ribonucleoprotein binding;0.000106940361643767!GO:0005525;GTP binding;0.000116274812258014!GO:0003713;transcription coactivator activity;0.000136169108882993!GO:0000785;chromatin;0.000157717776254926!GO:0044262;cellular carbohydrate metabolic process;0.000170073333988399!GO:0006612;protein targeting to membrane;0.000182178838067411!GO:0030663;COPI coated vesicle membrane;0.000192823590023014!GO:0030126;COPI vesicle coat;0.000192823590023014!GO:0008250;oligosaccharyl transferase complex;0.00019643046930215!GO:0030133;transport vesicle;0.000196954576154356!GO:0004576;oligosaccharyl transferase activity;0.000207093072428227!GO:0007243;protein kinase cascade;0.000213163840000087!GO:0005048;signal sequence binding;0.000217056516814361!GO:0045454;cell redox homeostasis;0.000231823048900115!GO:0051329;interphase of mitotic cell cycle;0.000246592865725404!GO:0015980;energy derivation by oxidation of organic compounds;0.000248594616221541!GO:0046474;glycerophospholipid biosynthetic process;0.000248594616221541!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000274796316245226!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000280196845150084!GO:0046489;phosphoinositide biosynthetic process;0.000285036588407798!GO:0000314;organellar small ribosomal subunit;0.000295950949094672!GO:0005763;mitochondrial small ribosomal subunit;0.000295950949094672!GO:0006091;generation of precursor metabolites and energy;0.000299934306282079!GO:0005885;Arp2/3 protein complex;0.00033847967668581!GO:0019899;enzyme binding;0.000356261731393828!GO:0006891;intra-Golgi vesicle-mediated transport;0.00038734589717192!GO:0006334;nucleosome assembly;0.000436677201327717!GO:0016363;nuclear matrix;0.000449024323175557!GO:0005791;rough endoplasmic reticulum;0.000449450818343182!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000473761692280361!GO:0030137;COPI-coated vesicle;0.000517564023648542!GO:0006839;mitochondrial transport;0.000518814421658016!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000525146561183702!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000550139066477019!GO:0032561;guanyl ribonucleotide binding;0.000569632405962401!GO:0019001;guanyl nucleotide binding;0.000569632405962401!GO:0005741;mitochondrial outer membrane;0.000641097014277157!GO:0043623;cellular protein complex assembly;0.000645038856026092!GO:0007010;cytoskeleton organization and biogenesis;0.000648457377009873!GO:0018196;peptidyl-asparagine modification;0.000676638471637361!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000676638471637361!GO:0007050;cell cycle arrest;0.00072878933739292!GO:0003690;double-stranded DNA binding;0.000762300548603684!GO:0003729;mRNA binding;0.000794079832529629!GO:0003899;DNA-directed RNA polymerase activity;0.000847825141903205!GO:0031497;chromatin assembly;0.000902122897441757!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000919548485499346!GO:0051920;peroxiredoxin activity;0.000949937368600602!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000968604712541061!GO:0030658;transport vesicle membrane;0.000987243782656714!GO:0043284;biopolymer biosynthetic process;0.00103495068851014!GO:0009165;nucleotide biosynthetic process;0.00103905049160847!GO:0031323;regulation of cellular metabolic process;0.00105556105849664!GO:0048522;positive regulation of cellular process;0.00108734845900775!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0011469149296337!GO:0030176;integral to endoplasmic reticulum membrane;0.00124321480513272!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00127006830836124!GO:0015399;primary active transmembrane transporter activity;0.00127006830836124!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00127023507131286!GO:0030036;actin cytoskeleton organization and biogenesis;0.00127677469896031!GO:0040008;regulation of growth;0.00131726221273915!GO:0051168;nuclear export;0.00136592960885245!GO:0007006;mitochondrial membrane organization and biogenesis;0.00139975185035403!GO:0051325;interphase;0.00142662294921807!GO:0030132;clathrin coat of coated pit;0.00149123686689619!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00150183090151306!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00150183090151306!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00150183090151306!GO:0005819;spindle;0.00155081653372837!GO:0043681;protein import into mitochondrion;0.00158466837493416!GO:0030134;ER to Golgi transport vesicle;0.00168868647809139!GO:0006626;protein targeting to mitochondrion;0.00173184199500623!GO:0006350;transcription;0.00176505510163801!GO:0045045;secretory pathway;0.00178640466445758!GO:0016044;membrane organization and biogenesis;0.00179159677900249!GO:0005774;vacuolar membrane;0.00180176692685462!GO:0008033;tRNA processing;0.00187387377718834!GO:0008186;RNA-dependent ATPase activity;0.00187387377718834!GO:0031902;late endosome membrane;0.0020325951524014!GO:0030127;COPII vesicle coat;0.00229281412445286!GO:0012507;ER to Golgi transport vesicle membrane;0.00229281412445286!GO:0006497;protein amino acid lipidation;0.00234206215115736!GO:0006414;translational elongation;0.0023675197810406!GO:0007040;lysosome organization and biogenesis;0.00237481443881195!GO:0006302;double-strand break repair;0.00243906300297862!GO:0000075;cell cycle checkpoint;0.002463441131386!GO:0006261;DNA-dependent DNA replication;0.00248249620410961!GO:0045892;negative regulation of transcription, DNA-dependent;0.00254125082606165!GO:0048500;signal recognition particle;0.00296083917668092!GO:0007033;vacuole organization and biogenesis;0.00312936078817883!GO:0030660;Golgi-associated vesicle membrane;0.00320564143571247!GO:0019843;rRNA binding;0.0032112503776431!GO:0030027;lamellipodium;0.00347022368300308!GO:0035258;steroid hormone receptor binding;0.00347137949932964!GO:0006892;post-Golgi vesicle-mediated transport;0.00369988633640656!GO:0065009;regulation of a molecular function;0.00380167569594498!GO:0065007;biological regulation;0.00380315287487183!GO:0031072;heat shock protein binding;0.00381024888109285!GO:0008047;enzyme activator activity;0.00415632803380403!GO:0006289;nucleotide-excision repair;0.00418982951284618!GO:0042802;identical protein binding;0.00422024353307624!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00425548472763592!GO:0006383;transcription from RNA polymerase III promoter;0.00427469530047569!GO:0046467;membrane lipid biosynthetic process;0.00432115080465634!GO:0006506;GPI anchor biosynthetic process;0.00433092934082493!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00459076850916946!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00459076850916946!GO:0048471;perinuclear region of cytoplasm;0.00461068576495988!GO:0004004;ATP-dependent RNA helicase activity;0.00485827777561422!GO:0006505;GPI anchor metabolic process;0.00509080624076329!GO:0044437;vacuolar part;0.00516433912163932!GO:0030521;androgen receptor signaling pathway;0.00517598146047665!GO:0030659;cytoplasmic vesicle membrane;0.00527048052142907!GO:0045792;negative regulation of cell size;0.00533745167409418!GO:0005765;lysosomal membrane;0.00541322659446386!GO:0042158;lipoprotein biosynthetic process;0.0057043142452962!GO:0007051;spindle organization and biogenesis;0.00581298737848797!GO:0000082;G1/S transition of mitotic cell cycle;0.00589355626772566!GO:0008180;signalosome;0.00589355626772566!GO:0003682;chromatin binding;0.00592992411701325!GO:0031543;peptidyl-proline dioxygenase activity;0.00596261266567263!GO:0030118;clathrin coat;0.00605965294255789!GO:0045893;positive regulation of transcription, DNA-dependent;0.0060774991032746!GO:0030308;negative regulation of cell growth;0.00614959426549508!GO:0006650;glycerophospholipid metabolic process;0.00616463811637827!GO:0030384;phosphoinositide metabolic process;0.00640247233808926!GO:0046483;heterocycle metabolic process;0.00675784910693752!GO:0005874;microtubule;0.00679531455054948!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00679706155830723!GO:0045047;protein targeting to ER;0.00679706155830723!GO:0004674;protein serine/threonine kinase activity;0.00699033710153062!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00704852908409093!GO:0006740;NADPH regeneration;0.00718112535306923!GO:0006098;pentose-phosphate shunt;0.00718112535306923!GO:0004177;aminopeptidase activity;0.00720673488980537!GO:0051539;4 iron, 4 sulfur cluster binding;0.00730428166646637!GO:0005869;dynactin complex;0.00745664478360748!GO:0030029;actin filament-based process;0.00745664478360748!GO:0017166;vinculin binding;0.0077242089445606!GO:0008092;cytoskeletal protein binding;0.00838078355570591!GO:0035035;histone acetyltransferase binding;0.00853910455586181!GO:0003711;transcription elongation regulator activity;0.00853910455586181!GO:0044433;cytoplasmic vesicle part;0.00856546848857131!GO:0046519;sphingoid metabolic process;0.00856953592165321!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00857479617999771!GO:0010468;regulation of gene expression;0.00868015404547403!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00874654748989316!GO:0003684;damaged DNA binding;0.00875681940415596!GO:0019798;procollagen-proline dioxygenase activity;0.00879707744251692!GO:0016197;endosome transport;0.00884241454664299!GO:0006402;mRNA catabolic process;0.00885295360004354!GO:0007030;Golgi organization and biogenesis;0.00914087913098463!GO:0043492;ATPase activity, coupled to movement of substances;0.00939859995358865!GO:0022890;inorganic cation transmembrane transporter activity;0.00961121682817167!GO:0006818;hydrogen transport;0.00968185563748431!GO:0008312;7S RNA binding;0.00985284200139261!GO:0015631;tubulin binding;0.00995096490929073!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0101505306452793!GO:0051087;chaperone binding;0.0102517377073902!GO:0015992;proton transport;0.0105498499480195!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0108907557392157!GO:0030125;clathrin vesicle coat;0.0108907557392157!GO:0030665;clathrin coated vesicle membrane;0.0108907557392157!GO:0009112;nucleobase metabolic process;0.0110360530365036!GO:0030880;RNA polymerase complex;0.0112080291634749!GO:0005684;U2-dependent spliceosome;0.0113386376216986!GO:0031418;L-ascorbic acid binding;0.011375343572165!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0115904997370438!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0119967624506635!GO:0045941;positive regulation of transcription;0.0120253561144541!GO:0030518;steroid hormone receptor signaling pathway;0.012438547438779!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0126130702712556!GO:0048487;beta-tubulin binding;0.0128614403873494!GO:0031901;early endosome membrane;0.0128945450998119!GO:0012506;vesicle membrane;0.013002741263344!GO:0006672;ceramide metabolic process;0.0130066278403121!GO:0050681;androgen receptor binding;0.0132219981344931!GO:0000059;protein import into nucleus, docking;0.0132771813926421!GO:0007264;small GTPase mediated signal transduction;0.0133219773836461!GO:0005832;chaperonin-containing T-complex;0.0133219773836461!GO:0003678;DNA helicase activity;0.0134052537502437!GO:0005586;collagen type III;0.0135650241932469!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0137834090318522!GO:0008094;DNA-dependent ATPase activity;0.0139113385496151!GO:0051252;regulation of RNA metabolic process;0.0140932037916587!GO:0003746;translation elongation factor activity;0.0142444994022769!GO:0006352;transcription initiation;0.0142836142915615!GO:0000339;RNA cap binding;0.0143953485543865!GO:0003923;GPI-anchor transamidase activity;0.0144181430413575!GO:0016255;attachment of GPI anchor to protein;0.0144181430413575!GO:0042765;GPI-anchor transamidase complex;0.0144181430413575!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145459284855162!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.014548395454987!GO:0005637;nuclear inner membrane;0.0146063516994955!GO:0000209;protein polyubiquitination;0.014822371923004!GO:0003756;protein disulfide isomerase activity;0.0149612946663809!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0149612946663809!GO:0043022;ribosome binding;0.0151788614782584!GO:0005801;cis-Golgi network;0.0154716671575455!GO:0008632;apoptotic program;0.0156853125734952!GO:0006897;endocytosis;0.016240928537481!GO:0010324;membrane invagination;0.016240928537481!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0165771963762833!GO:0008139;nuclear localization sequence binding;0.0168586865601026!GO:0016251;general RNA polymerase II transcription factor activity;0.0170222146181122!GO:0009967;positive regulation of signal transduction;0.0172496581583187!GO:0007088;regulation of mitosis;0.0172925877707078!GO:0008022;protein C-terminus binding;0.0176739000822132!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0182669381379605!GO:0001726;ruffle;0.0188974943066932!GO:0045936;negative regulation of phosphate metabolic process;0.0193832032576641!GO:0005862;muscle thin filament tropomyosin;0.0194792360483753!GO:0016741;transferase activity, transferring one-carbon groups;0.0195444790952088!GO:0008168;methyltransferase activity;0.0199670430784706!GO:0006007;glucose catabolic process;0.0200346796387662!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0202150739520649!GO:0000428;DNA-directed RNA polymerase complex;0.0202150739520649!GO:0003702;RNA polymerase II transcription factor activity;0.0202814637681349!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.020626035505622!GO:0007093;mitotic cell cycle checkpoint;0.02084113676032!GO:0030149;sphingolipid catabolic process;0.0214035161772851!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.021434972809084!GO:0044452;nucleolar part;0.0215593242714655!GO:0031124;mRNA 3'-end processing;0.0217603192491901!GO:0032940;secretion by cell;0.0226000385221315!GO:0008287;protein serine/threonine phosphatase complex;0.0229116225377549!GO:0045926;negative regulation of growth;0.0229978241928642!GO:0042585;germinal vesicle;0.0232735120083536!GO:0032774;RNA biosynthetic process;0.0233176009324132!GO:0043087;regulation of GTPase activity;0.0235908414224595!GO:0008484;sulfuric ester hydrolase activity;0.0239162537741884!GO:0000287;magnesium ion binding;0.0239401436494702!GO:0031625;ubiquitin protein ligase binding;0.0241264510586863!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0243182928424903!GO:0006351;transcription, DNA-dependent;0.0243182928424903!GO:0022408;negative regulation of cell-cell adhesion;0.024346680929276!GO:0005657;replication fork;0.024362391974168!GO:0048144;fibroblast proliferation;0.0246550058244491!GO:0048145;regulation of fibroblast proliferation;0.0246550058244491!GO:0007034;vacuolar transport;0.0247498722729861!GO:0006144;purine base metabolic process;0.0252784901673909!GO:0030119;AP-type membrane coat adaptor complex;0.0256612797459524!GO:0051052;regulation of DNA metabolic process;0.0259044828448868!GO:0005876;spindle microtubule;0.0261397570290233!GO:0031529;ruffle organization and biogenesis;0.0264103590268634!GO:0006354;RNA elongation;0.0265385392431573!GO:0051287;NAD binding;0.0266095914404591!GO:0032984;macromolecular complex disassembly;0.0268194933808504!GO:0016272;prefoldin complex;0.0269406091884566!GO:0022406;membrane docking;0.027292527471678!GO:0048278;vesicle docking;0.027292527471678!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0274639772340481!GO:0010257;NADH dehydrogenase complex assembly;0.0274639772340481!GO:0033108;mitochondrial respiratory chain complex assembly;0.0274639772340481!GO:0001527;microfibril;0.0274639772340481!GO:0006595;polyamine metabolic process;0.0275329165089499!GO:0043624;cellular protein complex disassembly;0.0282227054985844!GO:0006378;mRNA polyadenylation;0.0283631412727066!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0283631412727066!GO:0015002;heme-copper terminal oxidase activity;0.0283631412727066!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0283631412727066!GO:0004129;cytochrome-c oxidase activity;0.0283631412727066!GO:0006611;protein export from nucleus;0.0287616693361264!GO:0008610;lipid biosynthetic process;0.0290157677784126!GO:0006401;RNA catabolic process;0.0295193978784256!GO:0000049;tRNA binding;0.0296245180904098!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0299140293520293!GO:0006509;membrane protein ectodomain proteolysis;0.0299817017566825!GO:0033619;membrane protein proteolysis;0.0299817017566825!GO:0006310;DNA recombination;0.0301730830251695!GO:0006984;ER-nuclear signaling pathway;0.0308990751097446!GO:0051540;metal cluster binding;0.030989261620024!GO:0051536;iron-sulfur cluster binding;0.030989261620024!GO:0008629;induction of apoptosis by intracellular signals;0.0314323317404221!GO:0004656;procollagen-proline 4-dioxygenase activity;0.031970855887749!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.031970855887749!GO:0006739;NADP metabolic process;0.032186991499214!GO:0048468;cell development;0.0324828035467544!GO:0000118;histone deacetylase complex;0.0329178021421075!GO:0016126;sterol biosynthetic process;0.0333325107629787!GO:0050790;regulation of catalytic activity;0.0348291971533426!GO:0006368;RNA elongation from RNA polymerase II promoter;0.035490186123092!GO:0006904;vesicle docking during exocytosis;0.0355173690836935!GO:0031371;ubiquitin conjugating enzyme complex;0.0357084276044358!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0357084276044358!GO:0043433;negative regulation of transcription factor activity;0.0359142464695453!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.035966192043606!GO:0005758;mitochondrial intermembrane space;0.0360837828644673!GO:0000776;kinetochore;0.0361112488645547!GO:0005975;carbohydrate metabolic process;0.0365133971945159!GO:0042326;negative regulation of phosphorylation;0.0375162033037377!GO:0005784;translocon complex;0.0382748504434698!GO:0007017;microtubule-based process;0.0382748504434698!GO:0051128;regulation of cellular component organization and biogenesis;0.0383657599010895!GO:0030522;intracellular receptor-mediated signaling pathway;0.0383657599010895!GO:0030911;TPR domain binding;0.0384595625317673!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0385846177803219!GO:0046914;transition metal ion binding;0.0392423186494549!GO:0019377;glycolipid catabolic process;0.0393260921300275!GO:0042026;protein refolding;0.0397562301158395!GO:0032508;DNA duplex unwinding;0.0400055664885133!GO:0032392;DNA geometric change;0.0400055664885133!GO:0006607;NLS-bearing substrate import into nucleus;0.0403738421890826!GO:0000726;non-recombinational repair;0.0407526013035437!GO:0016408;C-acyltransferase activity;0.0408360973123486!GO:0008143;poly(A) binding;0.0411688270014666!GO:0048146;positive regulation of fibroblast proliferation;0.0411688270014666!GO:0030131;clathrin adaptor complex;0.0413806221671781!GO:0001953;negative regulation of cell-matrix adhesion;0.041942799204098!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0422505084533099!GO:0030508;thiol-disulfide exchange intermediate activity;0.0423354579072101!GO:0050811;GABA receptor binding;0.042364084496116!GO:0000775;chromosome, pericentric region;0.0425938302537047!GO:0048593;camera-type eye morphogenesis;0.0427473137008093!GO:0006405;RNA export from nucleus;0.0428086391046031!GO:0004563;beta-N-acetylhexosaminidase activity;0.0428086391046031!GO:0007052;mitotic spindle organization and biogenesis;0.0428514028653639!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0430706755359145!GO:0043241;protein complex disassembly;0.0434780898204407!GO:0008538;proteasome activator activity;0.0442165344385242!GO:0048518;positive regulation of biological process;0.0442165344385242!GO:0005096;GTPase activator activity;0.044958143445586!GO:0043488;regulation of mRNA stability;0.0452019874053113!GO:0043487;regulation of RNA stability;0.0452019874053113!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0459100996441423!GO:0007041;lysosomal transport;0.0462250149909939!GO:0042770;DNA damage response, signal transduction;0.0462250149909939!GO:0008270;zinc ion binding;0.0467932251893604!GO:0000152;nuclear ubiquitin ligase complex;0.0470896471253952!GO:0006778;porphyrin metabolic process;0.0471084420734407!GO:0033013;tetrapyrrole metabolic process;0.0471084420734407!GO:0050662;coenzyme binding;0.0475811181626405!GO:0031970;organelle envelope lumen;0.0476049218370934!GO:0008320;protein transmembrane transporter activity;0.0482225123148153!GO:0045449;regulation of transcription;0.0482225123148153!GO:0009116;nucleoside metabolic process;0.049023680276812!GO:0043065;positive regulation of apoptosis;0.0493133543540348!GO:0045334;clathrin-coated endocytic vesicle;0.0493439375213959!GO:0031123;RNA 3'-end processing;0.0495541819410264!GO:0016301;kinase activity;0.0498029670064303!GO:0004003;ATP-dependent DNA helicase activity;0.0498029670064303 | |||
|sample_id=10782 | |sample_id=10782 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=retroperitoneum | |sample_tissue=retroperitoneum | ||
|top_motifs=EVI1:2.17165339971;NKX3-1:2.01210709223;HMGA1,2:1.97304796213;ALX4:1.56333786549;TAL1_TCF{3,4,12}:1.55215555339;HIF1A:1.42365290997;ZNF384:1.40122415953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37633085799;AIRE:1.34320052414;POU3F1..4:1.28745970509;RXR{A,B,G}:1.2327353161;HOX{A5,B5}:1.21453872189;NR3C1:1.15931973226;ATF6:1.11080649263;NANOG{mouse}:1.01402961755;TBX4,5:0.991847401845;DBP:0.990926045168;RXRA_VDR{dimer}:0.974226508142;PAX4:0.967759201339;TOPORS:0.952757513539;UFEwm:0.952458006037;HSF1,2:0.94604190202;TEAD1:0.891687769119;PDX1:0.841771297911;PAX8:0.839265887598;FOXD3:0.813436815621;IKZF1:0.786520075549;HOX{A4,D4}:0.77301387783;ADNP_IRX_SIX_ZHX:0.768884513646;PITX1..3:0.755628924905;PRDM1:0.737859395628;NR1H4:0.73324314806;EN1,2:0.716961467802;TFAP2{A,C}:0.710008899324;GZF1:0.703420863173;HBP1_HMGB_SSRP1_UBTF:0.700238551302;AHR_ARNT_ARNT2:0.692403371697;GFI1B:0.670152028124;XBP1:0.668284007832;TP53:0.63088813036;PRRX1,2:0.622111095436;ZBTB16:0.615176963674;SOX17:0.600793717104;GTF2A1,2:0.59182392876;HES1:0.586245111218;TFAP2B:0.5708977323;NKX2-2,8:0.569514624064;ARID5B:0.511153153155;MZF1:0.478391451771;TFAP4:0.470180091398;NKX6-1,2:0.466261488957;NFE2L1:0.44635012767;ZNF143:0.426169512184;YY1:0.423301227993;CDC5L:0.411594848961;MTE{core}:0.408076373897;HIC1:0.406215013948;GTF2I:0.404987214104;ZBTB6:0.384394470409;BACH2:0.359601314421;NRF1:0.356381115376;MAZ:0.349779466171;ELK1,4_GABP{A,B1}:0.345173284899;KLF4:0.331275003966;FOXM1:0.325060284397;TLX1..3_NFIC{dimer}:0.318164401083;TFCP2:0.309515936348;PPARG:0.309410132781;NR6A1:0.309295403538;NFATC1..3:0.275650821952;FOXA2:0.27409997908;EBF1:0.269232054195;NKX3-2:0.248540579123;FOXN1:0.243195980433;SPZ1:0.237769925277;SRF:0.236152935519;GFI1:0.221834885862;GLI1..3:0.206907512878;ESR1:0.204232149768;NFE2L2:0.194424472147;SREBF1,2:0.17741283578;TEF:0.166423957094;CDX1,2,4:0.163919649345;MYBL2:0.162954839398;POU6F1:0.160485287489;SMAD1..7,9:0.150266348892;ZNF238:0.142929904997;LEF1_TCF7_TCF7L1,2:0.135433562823;MED-1{core}:0.129781771021;LHX3,4:0.117106059611;FOXL1:0.106462424559;FOSL2:0.102955513109;MYFfamily:0.101983679307;STAT5{A,B}:0.0995118019813;STAT1,3:0.0990687251443;NFE2:0.094864465918;PAX2:0.0874958389586;ZIC1..3:0.0665463406292;CREB1:0.0570730334843;FOXP1:0.0561058023716;ONECUT1,2:0.0463906976993;MAFB:0.0430431729126;GATA4:0.0296019556192;HMX1:0.0264399622254;PBX1:-0.00364995456864;FOS_FOS{B,L1}_JUN{B,D}:-0.0123408895321;IRF1,2:-0.0161523354514;PAX6:-0.0184712956428;REST:-0.0609559262854;NKX2-3_NKX2-5:-0.0861280544892;ZFP161:-0.0990588989026;HNF1A:-0.106058827751;RUNX1..3:-0.115596450386;NKX2-1,4:-0.127222519753;STAT2,4,6:-0.141889475185;PAX1,9:-0.153989924422;BREu{core}:-0.160489913786;HLF:-0.161539565331;SOX2:-0.169333877152;NHLH1,2:-0.177804092441;TFDP1:-0.180522738656;GCM1,2:-0.182435183759;E2F1..5:-0.187348382202;POU1F1:-0.20748458227;bHLH_family:-0.208265329847;IKZF2:-0.210967164503;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.229795343058;MYB:-0.247807330669;EGR1..3:-0.259363450329;SP1:-0.319558755317;ZNF148:-0.333937175166;OCT4_SOX2{dimer}:-0.339976011498;PATZ1:-0.351519179017;HNF4A_NR2F1,2:-0.35644285777;ELF1,2,4:-0.362134305906;ATF5_CREB3:-0.364548629838;NFY{A,B,C}:-0.370429293417;XCPE1{core}:-0.370868441662;MEF2{A,B,C,D}:-0.384528052805;NFKB1_REL_RELA:-0.408277469932;SOX{8,9,10}:-0.412389274392;MTF1:-0.422906911623;RREB1:-0.430572825295;SPI1:-0.44421422114;DMAP1_NCOR{1,2}_SMARC:-0.456769999035;PAX3,7:-0.480310846781;RFX1:-0.484419695699;ATF2:-0.498803422222;JUN:-0.499255705199;SPIB:-0.504222143472;ALX1:-0.515621313806;CRX:-0.522882923762;AR:-0.52362256466;TGIF1:-0.533198674107;IRF7:-0.539686569081;TLX2:-0.544476050606;FOXQ1:-0.610746990962;ETS1,2:-0.642580769868;T:-0.65058535752;NFIX:-0.679108273563;CUX2:-0.679175625985;LMO2:-0.728168598592;ESRRA:-0.731230477054;FOXO1,3,4:-0.732304986969;NANOG:-0.753777433492;GATA6:-0.766638017613;RORA:-0.767128120899;HOXA9_MEIS1:-0.772483185669;FOX{D1,D2}:-0.777754691209;HAND1,2:-0.794002213744;TBP:-0.824122389293;EP300:-0.828074750096;ATF4:-0.828318105737;FOX{I1,J2}:-0.841094281639;RBPJ:-0.852860537556;PAX5:-0.887061338005;POU5F1:-0.893597239271;POU2F1..3:-0.912861360235;CEBPA,B_DDIT3:-0.933651588455;FOXP3:-1.0229307021;RFX2..5_RFXANK_RFXAP:-1.03532078937;VSX1,2:-1.05420736869;BPTF:-1.06467511486;FOX{F1,F2,J1}:-1.08454718096;NFIL3:-1.11167778787;NR5A1,2:-1.18081341891;HOX{A6,A7,B6,B7}:-1.18157381954;SNAI1..3:-1.24015095309;ZNF423:-1.27803228021;ZEB1:-1.29413735456;MYOD1:-1.3127963092;SOX5:-1.51575578575 | |top_motifs=EVI1:2.17165339971;NKX3-1:2.01210709223;HMGA1,2:1.97304796213;ALX4:1.56333786549;TAL1_TCF{3,4,12}:1.55215555339;HIF1A:1.42365290997;ZNF384:1.40122415953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37633085799;AIRE:1.34320052414;POU3F1..4:1.28745970509;RXR{A,B,G}:1.2327353161;HOX{A5,B5}:1.21453872189;NR3C1:1.15931973226;ATF6:1.11080649263;NANOG{mouse}:1.01402961755;TBX4,5:0.991847401845;DBP:0.990926045168;RXRA_VDR{dimer}:0.974226508142;PAX4:0.967759201339;TOPORS:0.952757513539;UFEwm:0.952458006037;HSF1,2:0.94604190202;TEAD1:0.891687769119;PDX1:0.841771297911;PAX8:0.839265887598;FOXD3:0.813436815621;IKZF1:0.786520075549;HOX{A4,D4}:0.77301387783;ADNP_IRX_SIX_ZHX:0.768884513646;PITX1..3:0.755628924905;PRDM1:0.737859395628;NR1H4:0.73324314806;EN1,2:0.716961467802;TFAP2{A,C}:0.710008899324;GZF1:0.703420863173;HBP1_HMGB_SSRP1_UBTF:0.700238551302;AHR_ARNT_ARNT2:0.692403371697;GFI1B:0.670152028124;XBP1:0.668284007832;TP53:0.63088813036;PRRX1,2:0.622111095436;ZBTB16:0.615176963674;SOX17:0.600793717104;GTF2A1,2:0.59182392876;HES1:0.586245111218;TFAP2B:0.5708977323;NKX2-2,8:0.569514624064;ARID5B:0.511153153155;MZF1:0.478391451771;TFAP4:0.470180091398;NKX6-1,2:0.466261488957;NFE2L1:0.44635012767;ZNF143:0.426169512184;YY1:0.423301227993;CDC5L:0.411594848961;MTE{core}:0.408076373897;HIC1:0.406215013948;GTF2I:0.404987214104;ZBTB6:0.384394470409;BACH2:0.359601314421;NRF1:0.356381115376;MAZ:0.349779466171;ELK1,4_GABP{A,B1}:0.345173284899;KLF4:0.331275003966;FOXM1:0.325060284397;TLX1..3_NFIC{dimer}:0.318164401083;TFCP2:0.309515936348;PPARG:0.309410132781;NR6A1:0.309295403538;NFATC1..3:0.275650821952;FOXA2:0.27409997908;EBF1:0.269232054195;NKX3-2:0.248540579123;FOXN1:0.243195980433;SPZ1:0.237769925277;SRF:0.236152935519;GFI1:0.221834885862;GLI1..3:0.206907512878;ESR1:0.204232149768;NFE2L2:0.194424472147;SREBF1,2:0.17741283578;TEF:0.166423957094;CDX1,2,4:0.163919649345;MYBL2:0.162954839398;POU6F1:0.160485287489;SMAD1..7,9:0.150266348892;ZNF238:0.142929904997;LEF1_TCF7_TCF7L1,2:0.135433562823;MED-1{core}:0.129781771021;LHX3,4:0.117106059611;FOXL1:0.106462424559;FOSL2:0.102955513109;MYFfamily:0.101983679307;STAT5{A,B}:0.0995118019813;STAT1,3:0.0990687251443;NFE2:0.094864465918;PAX2:0.0874958389586;ZIC1..3:0.0665463406292;CREB1:0.0570730334843;FOXP1:0.0561058023716;ONECUT1,2:0.0463906976993;MAFB:0.0430431729126;GATA4:0.0296019556192;HMX1:0.0264399622254;PBX1:-0.00364995456864;FOS_FOS{B,L1}_JUN{B,D}:-0.0123408895321;IRF1,2:-0.0161523354514;PAX6:-0.0184712956428;REST:-0.0609559262854;NKX2-3_NKX2-5:-0.0861280544892;ZFP161:-0.0990588989026;HNF1A:-0.106058827751;RUNX1..3:-0.115596450386;NKX2-1,4:-0.127222519753;STAT2,4,6:-0.141889475185;PAX1,9:-0.153989924422;BREu{core}:-0.160489913786;HLF:-0.161539565331;SOX2:-0.169333877152;NHLH1,2:-0.177804092441;TFDP1:-0.180522738656;GCM1,2:-0.182435183759;E2F1..5:-0.187348382202;POU1F1:-0.20748458227;bHLH_family:-0.208265329847;IKZF2:-0.210967164503;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.229795343058;MYB:-0.247807330669;EGR1..3:-0.259363450329;SP1:-0.319558755317;ZNF148:-0.333937175166;OCT4_SOX2{dimer}:-0.339976011498;PATZ1:-0.351519179017;HNF4A_NR2F1,2:-0.35644285777;ELF1,2,4:-0.362134305906;ATF5_CREB3:-0.364548629838;NFY{A,B,C}:-0.370429293417;XCPE1{core}:-0.370868441662;MEF2{A,B,C,D}:-0.384528052805;NFKB1_REL_RELA:-0.408277469932;SOX{8,9,10}:-0.412389274392;MTF1:-0.422906911623;RREB1:-0.430572825295;SPI1:-0.44421422114;DMAP1_NCOR{1,2}_SMARC:-0.456769999035;PAX3,7:-0.480310846781;RFX1:-0.484419695699;ATF2:-0.498803422222;JUN:-0.499255705199;SPIB:-0.504222143472;ALX1:-0.515621313806;CRX:-0.522882923762;AR:-0.52362256466;TGIF1:-0.533198674107;IRF7:-0.539686569081;TLX2:-0.544476050606;FOXQ1:-0.610746990962;ETS1,2:-0.642580769868;T:-0.65058535752;NFIX:-0.679108273563;CUX2:-0.679175625985;LMO2:-0.728168598592;ESRRA:-0.731230477054;FOXO1,3,4:-0.732304986969;NANOG:-0.753777433492;GATA6:-0.766638017613;RORA:-0.767128120899;HOXA9_MEIS1:-0.772483185669;FOX{D1,D2}:-0.777754691209;HAND1,2:-0.794002213744;TBP:-0.824122389293;EP300:-0.828074750096;ATF4:-0.828318105737;FOX{I1,J2}:-0.841094281639;RBPJ:-0.852860537556;PAX5:-0.887061338005;POU5F1:-0.893597239271;POU2F1..3:-0.912861360235;CEBPA,B_DDIT3:-0.933651588455;FOXP3:-1.0229307021;RFX2..5_RFXANK_RFXAP:-1.03532078937;VSX1,2:-1.05420736869;BPTF:-1.06467511486;FOX{F1,F2,J1}:-1.08454718096;NFIL3:-1.11167778787;NR5A1,2:-1.18081341891;HOX{A6,A7,B6,B7}:-1.18157381954;SNAI1..3:-1.24015095309;ZNF423:-1.27803228021;ZEB1:-1.29413735456;MYOD1:-1.3127963092;SOX5:-1.51575578575 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10782-110G8;search_select_hide=table117:FF:10782-110G8 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | liposarcoma cell line:KMLS-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11870 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11870
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11870
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.602 |
| 10 | 10 | 0.641 |
| 100 | 100 | 0.454 |
| 101 | 101 | 0.786 |
| 102 | 102 | 0.695 |
| 103 | 103 | 0.895 |
| 104 | 104 | 0.442 |
| 105 | 105 | 0.29 |
| 106 | 106 | 0.0809 |
| 107 | 107 | 0.282 |
| 108 | 108 | 0.115 |
| 109 | 109 | 0.295 |
| 11 | 11 | 0.36 |
| 110 | 110 | 0.361 |
| 111 | 111 | 0.781 |
| 112 | 112 | 0.836 |
| 113 | 113 | 0.026 |
| 114 | 114 | 0.448 |
| 115 | 115 | 0.852 |
| 116 | 116 | 0.279 |
| 117 | 117 | 0.541 |
| 118 | 118 | 0.629 |
| 119 | 119 | 0.897 |
| 12 | 12 | 0.519 |
| 120 | 120 | 0.968 |
| 121 | 121 | 0.992 |
| 122 | 122 | 0.0269 |
| 123 | 123 | 0.881 |
| 124 | 124 | 0.903 |
| 125 | 125 | 0.767 |
| 126 | 126 | 0.0452 |
| 127 | 127 | 0.745 |
| 128 | 128 | 0.239 |
| 129 | 129 | 0.467 |
| 13 | 13 | 0.15 |
| 130 | 130 | 0.541 |
| 131 | 131 | 0.501 |
| 132 | 132 | 0.327 |
| 133 | 133 | 0.62 |
| 134 | 134 | 0.863 |
| 135 | 135 | 0.241 |
| 136 | 136 | 0.742 |
| 137 | 137 | 0.636 |
| 138 | 138 | 0.906 |
| 139 | 139 | 0.969 |
| 14 | 14 | 0.244 |
| 140 | 140 | 0.78 |
| 141 | 141 | 0.103 |
| 142 | 142 | 0.951 |
| 143 | 143 | 0.528 |
| 144 | 144 | 0.265 |
| 145 | 145 | 0.431 |
| 146 | 146 | 0.0866 |
| 147 | 147 | 0.229 |
| 148 | 148 | 0.793 |
| 149 | 149 | 0.922 |
| 15 | 15 | 0.0884 |
| 150 | 150 | 0.182 |
| 151 | 151 | 0.2 |
| 152 | 152 | 0.897 |
| 153 | 153 | 0.792 |
| 154 | 154 | 0.261 |
| 155 | 155 | 0.172 |
| 156 | 156 | 0.54 |
| 157 | 157 | 0.774 |
| 158 | 158 | 0.0152 |
| 159 | 159 | 0.158 |
| 16 | 16 | 0.369 |
| 160 | 160 | 0.103 |
| 161 | 161 | 0.013 |
| 162 | 162 | 0.269 |
| 163 | 163 | 0.297 |
| 164 | 164 | 0.645 |
| 165 | 165 | 0.619 |
| 166 | 166 | 0.147 |
| 167 | 167 | 0.488 |
| 168 | 168 | 0.157 |
| 169 | 169 | 0.319 |
| 17 | 17 | 0.893 |
| 18 | 18 | 0.444 |
| 19 | 19 | 0.527 |
| 2 | 2 | 0.871 |
| 20 | 20 | 0.756 |
| 21 | 21 | 0.256 |
| 22 | 22 | 0.701 |
| 23 | 23 | 0.119 |
| 24 | 24 | 0.58 |
| 25 | 25 | 0.0806 |
| 26 | 26 | 0.91 |
| 27 | 27 | 0.467 |
| 28 | 28 | 0.469 |
| 29 | 29 | 0.473 |
| 3 | 3 | 0.569 |
| 30 | 30 | 0.494 |
| 31 | 31 | 0.743 |
| 32 | 32 | 7.64878e-6 |
| 33 | 33 | 0.475 |
| 34 | 34 | 0.356 |
| 35 | 35 | 0.781 |
| 36 | 36 | 0.102 |
| 37 | 37 | 0.864 |
| 38 | 38 | 0.194 |
| 39 | 39 | 0.553 |
| 4 | 4 | 0.948 |
| 40 | 40 | 0.00726 |
| 41 | 41 | 0.209 |
| 42 | 42 | 0.445 |
| 43 | 43 | 0.455 |
| 44 | 44 | 0.807 |
| 45 | 45 | 0.21 |
| 46 | 46 | 0.861 |
| 47 | 47 | 0.583 |
| 48 | 48 | 0.582 |
| 49 | 49 | 0.252 |
| 5 | 5 | 0.608 |
| 50 | 50 | 0.824 |
| 51 | 51 | 0.529 |
| 52 | 52 | 0.202 |
| 53 | 53 | 0.729 |
| 54 | 54 | 0.559 |
| 55 | 55 | 0.0335 |
| 56 | 56 | 0.888 |
| 57 | 57 | 0.783 |
| 58 | 58 | 0.259 |
| 59 | 59 | 0.221 |
| 6 | 6 | 0.668 |
| 60 | 60 | 0.0608 |
| 61 | 61 | 0.699 |
| 62 | 62 | 0.295 |
| 63 | 63 | 0.413 |
| 64 | 64 | 0.354 |
| 65 | 65 | 0.248 |
| 66 | 66 | 0.51 |
| 67 | 67 | 0.914 |
| 68 | 68 | 0.629 |
| 69 | 69 | 0.711 |
| 7 | 7 | 0.0229 |
| 70 | 70 | 0.158 |
| 71 | 71 | 0.818 |
| 72 | 72 | 0.281 |
| 73 | 73 | 0.889 |
| 74 | 74 | 0.323 |
| 75 | 75 | 0.762 |
| 76 | 76 | 0.95 |
| 77 | 77 | 0.914 |
| 78 | 78 | 0.551 |
| 79 | 79 | 0.261 |
| 8 | 8 | 0.913 |
| 80 | 80 | 0.25 |
| 81 | 81 | 0.947 |
| 82 | 82 | 0.601 |
| 83 | 83 | 0.513 |
| 84 | 84 | 0.784 |
| 85 | 85 | 0.373 |
| 86 | 86 | 0.666 |
| 87 | 87 | 0.636 |
| 88 | 88 | 0.649 |
| 89 | 89 | 0.616 |
| 9 | 9 | 0.33 |
| 90 | 90 | 0.273 |
| 91 | 91 | 0.169 |
| 92 | 92 | 0.999 |
| 93 | 93 | 0.776 |
| 94 | 94 | 0.813 |
| 95 | 95 | 0.88 |
| 96 | 96 | 0.749 |
| 97 | 97 | 0.605 |
| 98 | 98 | 0.00588 |
| 99 | 99 | 0.312 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11870
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103744 liposarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0103744 (liposarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
