FF:10789-110H6: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	acute myeloid leukemia (FAB M0) cell line:Kasumi-3
Species:	Human (Homo sapiens)
Library ID:	CNhs13241
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	57
cell type	myeloid progenitor cell
cell line	Kasumi-3
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005659

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13241		CAGE		DRX007772		DRR008644

Accession ID Hg19

Library id		BAM		CTSS
CNhs13241		DRZ000069		DRZ001454

Accession ID Hg38

Library id		BAM		CTSS
CNhs13241		DRZ011419		DRZ012804

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0384
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.506
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0743
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0655
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.32
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.141
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.277
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.406
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.993
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.292
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.263
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0761
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.121
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0761
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.422
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0274
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.194
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0605
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.237
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.406
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13241

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.37189e-5
MA0003.1	MA0003.1	0.259
MA0004.1	MA0004.1	0.116
MA0006.1	MA0006.1	0.393
MA0007.1	MA0007.1	0.936
MA0009.1	MA0009.1	0.126
MA0014.1	MA0014.1	0.313
MA0017.1	MA0017.1	0.00969
MA0018.2	MA0018.2	0.093
MA0019.1	MA0019.1	0.851
MA0024.1	MA0024.1	2.32026e-7
MA0025.1	MA0025.1	0.344
MA0027.1	MA0027.1	0.167
MA0028.1	MA0028.1	7.51645e-6
MA0029.1	MA0029.1	0.612
MA0030.1	MA0030.1	0.279
MA0031.1	MA0031.1	0.96
MA0035.2	MA0035.2	0.00184
MA0038.1	MA0038.1	0.345
MA0039.2	MA0039.2	0.553
MA0040.1	MA0040.1	0.59
MA0041.1	MA0041.1	0.316
MA0042.1	MA0042.1	0.497
MA0043.1	MA0043.1	0.941
MA0046.1	MA0046.1	0.565
MA0047.2	MA0047.2	0.512
MA0048.1	MA0048.1	0.357
MA0050.1	MA0050.1	0.0138
MA0051.1	MA0051.1	0.173
MA0052.1	MA0052.1	0.0987
MA0055.1	MA0055.1	0.00712
MA0057.1	MA0057.1	0.559
MA0058.1	MA0058.1	0.00702
MA0059.1	MA0059.1	0.00794
MA0060.1	MA0060.1	1.42782e-9
MA0061.1	MA0061.1	0.1
MA0062.2	MA0062.2	3.20289e-13
MA0065.2	MA0065.2	0.00463
MA0066.1	MA0066.1	0.376
MA0067.1	MA0067.1	0.728
MA0068.1	MA0068.1	0.778
MA0069.1	MA0069.1	0.04
MA0070.1	MA0070.1	0.703
MA0071.1	MA0071.1	0.0658
MA0072.1	MA0072.1	0.447
MA0073.1	MA0073.1	0.536
MA0074.1	MA0074.1	0.931
MA0076.1	MA0076.1	3.17153e-8
MA0077.1	MA0077.1	0.658
MA0078.1	MA0078.1	0.487
MA0079.2	MA0079.2	0.498
MA0080.2	MA0080.2	3.50931e-15
MA0081.1	MA0081.1	1.40885e-4
MA0083.1	MA0083.1	0.00755
MA0084.1	MA0084.1	0.85
MA0087.1	MA0087.1	0.76
MA0088.1	MA0088.1	0.00301
MA0090.1	MA0090.1	2.72378e-4
MA0091.1	MA0091.1	0.771
MA0092.1	MA0092.1	0.822
MA0093.1	MA0093.1	0.0528
MA0099.2	MA0099.2	0.00942
MA0100.1	MA0100.1	4.04343e-5
MA0101.1	MA0101.1	0.427
MA0102.2	MA0102.2	0.105
MA0103.1	MA0103.1	0.893
MA0104.2	MA0104.2	0.0102
MA0105.1	MA0105.1	0.00114
MA0106.1	MA0106.1	0.736
MA0107.1	MA0107.1	0.76
MA0108.2	MA0108.2	0.00151
MA0111.1	MA0111.1	0.868
MA0112.2	MA0112.2	0.0838
MA0113.1	MA0113.1	0.657
MA0114.1	MA0114.1	0.0209
MA0115.1	MA0115.1	0.0182
MA0116.1	MA0116.1	1.00229e-4
MA0117.1	MA0117.1	0.945
MA0119.1	MA0119.1	0.811
MA0122.1	MA0122.1	0.279
MA0124.1	MA0124.1	0.322
MA0125.1	MA0125.1	0.926
MA0131.1	MA0131.1	0.221
MA0135.1	MA0135.1	0.379
MA0136.1	MA0136.1	2.65594e-24
MA0137.2	MA0137.2	0.072
MA0138.2	MA0138.2	0.406
MA0139.1	MA0139.1	0.673
MA0140.1	MA0140.1	4.37643e-4
MA0141.1	MA0141.1	0.104
MA0142.1	MA0142.1	0.489
MA0143.1	MA0143.1	0.519
MA0144.1	MA0144.1	0.273
MA0145.1	MA0145.1	0.435
MA0146.1	MA0146.1	0.0281
MA0147.1	MA0147.1	0.011
MA0148.1	MA0148.1	0.661
MA0149.1	MA0149.1	0.193
MA0150.1	MA0150.1	0.603
MA0152.1	MA0152.1	0.532
MA0153.1	MA0153.1	0.0183
MA0154.1	MA0154.1	0.0231
MA0155.1	MA0155.1	0.852
MA0156.1	MA0156.1	2.26853e-21
MA0157.1	MA0157.1	0.801
MA0159.1	MA0159.1	0.681
MA0160.1	MA0160.1	0.00226
MA0162.1	MA0162.1	0.539
MA0163.1	MA0163.1	5.25714e-16
MA0164.1	MA0164.1	0.676
MA0258.1	MA0258.1	0.182
MA0259.1	MA0259.1	0.128

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13241

Novel motif	Logo	P-value
1	1	0.37
10	10	0.032
100	100	0.993
101	101	0.613
102	102	0.393
103	103	0.0127
104	104	0.467
105	105	0.518
106	106	0.786
107	107	0.304
108	108	0.253
109	109	0.0322
11	11	0.0374
110	110	0.217
111	111	0.617
112	112	0.351
113	113	0.674
114	114	0.31
115	115	0.457
116	116	0.847
117	117	0.0272
118	118	0.0216
119	119	0.653
12	12	0.463
120	120	0.406
121	121	0.647
122	122	0.361
123	123	0.524
124	124	0.0583
125	125	0.123
126	126	0.115
127	127	0.177
128	128	0.815
129	129	0.216
13	13	0.0014
130	130	0.0524
131	131	0.22
132	132	0.468
133	133	0.731
134	134	0.833
135	135	0.468
136	136	0.119
137	137	0.153
138	138	0.796
139	139	0.944
14	14	0.98
140	140	0.416
141	141	0.624
142	142	0.547
143	143	0.414
144	144	0.246
145	145	0.858
146	146	0.51
147	147	0.0112
148	148	0.845
149	149	0.886
15	15	0.105
150	150	0.339
151	151	0.878
152	152	0.81
153	153	0.221
154	154	0.544
155	155	0.257
156	156	0.361
157	157	0.358
158	158	0.827
159	159	0.487
16	16	0.913
160	160	0.396
161	161	0.063
162	162	0.263
163	163	0.534
164	164	0.544
165	165	0.263
166	166	0.205
167	167	0.447
168	168	0.755
169	169	0.406
17	17	0.973
18	18	0.361
19	19	0.871
2	2	0.797
20	20	0.54
21	21	0.794
22	22	0.419
23	23	0.00686
24	24	0.0207
25	25	0.0242
26	26	0.152
27	27	0.25
28	28	0.97
29	29	0.0573
3	3	0.0201
30	30	0.309
31	31	0.33
32	32	0.0288
33	33	0.0939
34	34	0.528
35	35	0.29
36	36	0.0446
37	37	0.115
38	38	0.458
39	39	0.225
4	4	0.0966
40	40	0.0273
41	41	0.718
42	42	0.0581
43	43	0.452
44	44	0.611
45	45	0.921
46	46	0.17
47	47	0.0153
48	48	0.0202
49	49	0.322
5	5	0.831
50	50	0.897
51	51	0.729
52	52	0.344
53	53	0.305
54	54	0.538
55	55	0.813
56	56	0.828
57	57	0.538
58	58	0.188
59	59	0.229
6	6	0.816
60	60	0.606
61	61	0.136
62	62	0.228
63	63	0.953
64	64	0.191
65	65	0.47
66	66	0.00443
67	67	0.913
68	68	0.526
69	69	0.755
7	7	0.00176
70	70	0.215
71	71	0.0142
72	72	0.465
73	73	0.276
74	74	0.704
75	75	0.0112
76	76	0.276
77	77	0.686
78	78	0.00401
79	79	0.0233
8	8	0.264
80	80	0.358
81	81	0.974
82	82	0.883
83	83	0.0358
84	84	0.8
85	85	0.399
86	86	0.497
87	87	0.0259
88	88	0.324
89	89	0.81
9	9	0.141
90	90	0.283
91	91	0.863
92	92	0.0791
93	93	0.178
94	94	0.763
95	95	7.02915e-5
96	96	0.608
97	97	0.56
98	98	0.39
99	99	0.384

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13241

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005659
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007772;DRR008644;DRZ000069;DRZ001454;DRZ011419;DRZ012804
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.15!139.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.14!136.35!PLEK;;chr7:27205136..27205164,-!p1@HOXA9!2.14!136.16!HOXA9;;chr2:16080659..16080685,+!p1@MYCN!2.08!118.16!MYCN;;chr21:39870339..39870443,-!p1@ERG!2.05!110.31!ERG;;chr1:25256756..25256774,-!p1@RUNX3!1.90!144.40!RUNX3;;chr4:57522513..57522548,-!p4@HOPX!1.90!78.90!HOPX;;chr12:54694758..54694805,-!p1@NFE2!1.82!77.56!NFE2;;chr4:54966328..54966335,+!p1@GSX2!1.81!63.39!GSX2;;chr12:54694807..54694832,-!p3@NFE2!1.80!62.05!NFE2;;chr19:13213662..13213686,-!p1@LYL1!1.75!81.01!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.74!62.24!MYB;;chr20:31350184..31350200,+!p1@DNMT3B!1.73!107.63!DNMT3B;;chr6:135502501..135502546,+!p1@MYB!1.68!56.30!MYB;;chr9:135854091..135854159,+!p1@GFI1B!1.63!42.13!GFI1B;;chr7:27205106..27205134,-!p2@HOXA9!1.58!37.34!HOXA9;;chr7:50344289..50344323,+!p1@IKZF1!1.58!37.15!IKZF1;;chr7:27213893..27213954,-!p1@HOXA10!1.52!31.79!HOXA10;;chr4:57522598..57522664,-!p3@HOPX!1.50!30.64!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!1.48!29.49!CREB3L2;;chr7:27192185..27192209,-!p1@HOXA3!1.44!26.24!HOXA3;;chr1:92951607..92951661,-!p1@GFI1!1.42!25.09!GFI1;;chr2:16082155..16082169,+!p3@MYCN!1.40!24.13!MYCN;;chr14:75988771..75988826,+!p1@BATF!1.39!30.83!BATF;;chr4:57522674..57522699,-!p5@HOPX!1.39!23.36!HOPX;;chr1:42384532..42384603,-!p2@HIVEP3!1.36!22.02!HIVEP3;;chr19:13213511..13213545,-!p2@LYL1!1.35!23.36!LYL1;;chr19:33793430..33793447,-!p1@CEBPA!1.32!81.58!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.32!19.92!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.29!18.38!SPI1;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.81!KDM5D;;chr8:40755333..40755352,-!p1@ZMAT4!1.26!17.04!ZMAT4;;chr10:94449703..94449718,+!p1@HHEX!1.23!61.47!HHEX;;chr19:13213954..13214021,-!p4@LYL1!1.23!15.89!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.19!14.55!PLEK;;chr8:60031619..60031676,-!p1@TOX!1.18!30.26!TOX;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.02!IKZF1;;chr2:16080635..16080650,+!p4@MYCN!1.13!12.45!MYCN;;chr2:16081912..16081931,+!p2@MYCN!1.12!12.06!MYCN;;chr19:22235279..22235301,+!p1@ZNF257!1.11!22.60!ZNF257;;chr7:27196217..27196246,-!p2@HOXA7!1.11!11.87!HOXA7;;chr7:137620684..137620711,-!p4@CREB3L2!1.10!11.68!CREB3L2;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.77!ELF1;;chr11:47399947..47399961,-!p3@SPI1!1.08!11.11!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!13.02!PLAGL1;;chr3:168864315..168864339,-!p2@MECOM!1.06!17.43!MECOM;;chr12:11802547..11802560,+!p5@ETV6!1.06!14.55!ETV6;;chr12:54778471..54778528,-!p1@ZNF385A!1.05!10.15!ZNF385A;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.39!HHEX;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.41!RUNX1;;chr5:88178983..88179012,-!p1@MEF2C!0.97!65.88!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!0.97!8.23!SPI1;;chr19:20011744..20011770,+!p1@ZNF93!0.96!32.75!ZNF93;;chr17:79881332..79881348,-!p3@MAFG!0.96!12.06!MAFG;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.58!HOXB2;;chr5:321810..321877,+!p1@AHRR!0.95!25.66!AHRR;;chr19:24097706..24097731,+!p2@ZNF726!0.95!15.32!ZNF726;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.85!SPI1;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.81!NCOA7;;chr7:50343634..50343717,+!p2@IKZF1!0.93!7.47!IKZF1;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.28!ZBTB20;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.15!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.94!ZNF788;;chr3:18486354..18486377,-!p2@SATB1!0.91!9.00!SATB1;;chr4:57522753..57522760,-!p18@HOPX!0.91!7.09!HOPX;;chr2:192015750..192015793,-!p2@STAT4!0.90!9.58!STAT4;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.77!ZNF90;;chr20:50159198..50159299,-!p1@NFATC2!0.88!9.96!NFATC2;;chr2:208031943..208031978,-!p5@KLF7!0.87!8.81!KLF7;;chr11:128563948..128564003,+!p1@FLI1!0.86!79.09!FLI1;;chr17:1959369..1959388,+!p2@HIC1!0.86!17.04!HIC1;;chr19:36391434..36391450,-!p1@NFKBID!0.86!12.83!NFKBID;;chr19:13213704..13213726,-!p3@LYL1!0.86!8.43!LYL1;;chr7:115670804..115670825,-!p1@TFEC!0.86!6.32!TFEC;;chr7:128577972..128578047,+!p1@IRF5!0.85!9.96!IRF5;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.58!HOXB2;;chr4:57522166..57522260,-!p2@HOPX!0.85!7.09!HOPX;;chr8:60031563..60031574,-!p7@TOX!0.85!6.13!TOX;;chr22:29196547..29196563,-!p2@XBP1!0.84!231.15!XBP1;;chr6:20402102..20402152,+!p1@E2F3!0.84!25.66!E2F3;;chr5:88179017..88179046,-!p2@MEF2C!0.84!25.28!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.84!23.94!ZNF439;;chr7:149470641..149470694,-!p1@ZNF467!0.83!27.58!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!0.83!16.66!JARID2;;chr19:13213555..13213568,-!p5@LYL1!0.83!5.75!LYL1;;chr1:92949331..92949377,-!p2@GFI1!0.83!5.75!GFI1;;chr3:128212033..128212051,-!p1@GATA2!0.83!5.75!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.83!5.75!ATXN7;;chr9:20382446..20382493,-!p4@MLLT3!0.83!5.75!MLLT3;;chr9:117150254..117150271,-!p1@AKNA!0.82!16.09!AKNA;;chr6:126240442..126240459,+!p4@NCOA7!0.82!7.28!NCOA7;;chr19:21106081..21106115,+!p2@ZNF85!0.80!16.85!ZNF85;;chr2:192015701..192015743,-!p1@STAT4!0.80!7.47!STAT4;;chr4:57522701..57522712,-!p10@HOPX!0.80!5.36!HOPX;;chr10:94451574..94451587,+!p6@HHEX!0.79!5.17!HHEX;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.89!PRDM8;;chr6:135502472..135502489,+!p3@MYB!0.78!4.98!MYB;;chr6:391743..391759,+!p1@IRF4!0.78!4.98!IRF4;;chr17:46622175..46622186,-!p12@HOXB2!0.78!4.98!HOXB2;;chr19:45579725..45579743,-!p1@ZNF296!0.77!23.75!ZNF296;;chr19:24097675..24097699,+!p1@ZNF726!0.77!17.43!ZNF726;;chr3:128206762..128206781,-!p2@GATA2!0.76!32.56!GATA2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.89!BCL11A;;chr3:71355163..71355209,-!p5@FOXP1!0.76!6.89!FOXP1;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.79!IKZF1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.81!ZNF43;;chr3:44626446..44626477,+!p1@ZNF660!0.75!8.81!ZNF660;;chr12:54785074..54785122,-!p2@ZNF385A!0.75!7.47!ZNF385A;;chr19:53039233..53039247,+!p2@ZNF808!0.75!7.09!ZNF808;;chr17:40440481..40440550,+!p1@STAT5A!0.74!36.00!STAT5A;;chr19:19976683..19976709,+!p1@ZNF253!0.74!21.83!ZNF253;;chr17:46622070..46622109,-!p1@HOXB2!0.74!10.72!HOXB2;;chr19:23299814..23299844,+!p1@ZNF730!0.73!5.55!ZNF730;;chr16:88752861..88752884,-!p2@SNAI3!0.73!4.40!SNAI3;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.40!HOXB4;;chr17:42295682..42295731,-!p17@UBTF!0.72!4.21!UBTF;;chr17:61920280..61920343,-!p2@SMARCD2!0.71!44.81!SMARCD2;;chr14:74226961..74227020,-!p1@C14orf43!0.71!30.45!C14orf43;;chr19:23433144..23433204,-!p1@ZNF724P!0.71!20.49!ZNF724P;;chr17:53342311..53342400,+!p1@HLF!0.71!4.79!HLF;;chr19:12551785..12551823,-!p1@ZNF443!0.70!6.89!ZNF443;;chr22:29196492..29196503,-!p3@XBP1!0.70!6.51!XBP1;;chr8:60031534..60031553,-!p8@TOX!0.70!4.02!TOX;;chr7:64838786..64838809,+!p2@ZNF92!0.69!25.09!ZNF92;;chr17:1958388..1958404,+!p1@HIC1!0.68!27.39!HIC1;;chr1:153940354..153940395,+!p1@CREB3L4!0.68!17.43!CREB3L4;;chr19:21950332..21950356,-!p2@ZNF100!0.68!8.81!ZNF100;;chrY:2803415..2803468,+!p1@ZFY!0.68!3.83!ZFY;;chr21:40177845..40177863,+!p1@ETS2!0.67!251.26!ETS2;;chr18:45457423..45457468,-!p5@SMAD2!0.67!15.32!SMAD2;;chr19:12551824..12551846,-!p2@ZNF443!0.67!5.17!ZNF443;;chr19:20011731..20011743,+!p3@ZNF93!0.67!4.98!ZNF93;;chr14:75988831..75988847,+!p2@BATF!0.67!3.64!BATF;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.64!RFX8;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.64!E2F8;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr19:23941680..23941704,-!p1@ZNF681!0.66!11.68!ZNF681;;chr19:23941647..23941672,-!p2@ZNF681!0.66!6.32!ZNF681;;chr3:141747459..141747475,-!p1@TFDP2!0.65!33.70!TFDP2;;chr14:55493763..55493824,-!p1@WDHD1!0.65!30.45!WDHD1;;chr19:53073532..53073551,+!p1@ZNF701!0.65!18.00!ZNF701;;chr1:33004996..33005017,+!p3@ZBTB8A!0.65!4.98!ZBTB8A;;chr18:45457909..45457939,-!p8@SMAD2!0.65!4.40!SMAD2;;chr19:22235310..22235319,+!p2@ZNF257!0.65!3.45!ZNF257;;chr7:63505799..63505904,+!p1@ZNF727!0.65!3.45!ZNF727;;chr1:25291475..25291511,-!p2@RUNX3!0.65!3.45!RUNX3;;chr10:51572339..51572376,+!p4@NCOA4!0.64!8.43!NCOA4;;chr19:20748574..20748599,-!p1@ZNF737!0.63!22.98!ZNF737;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.17!HOXB4;;chr21:36421347..36421380,-!p8@RUNX1!0.63!3.26!RUNX1;;chr2:60781201..60781258,-!p3@BCL11A!0.63!3.26!BCL11A;;chr3:168865250..168865272,-!p5@MECOM!0.63!3.26!MECOM;;chr7:27205175..27205184,-!p3@HOXA9!0.63!3.26!HOXA9;;chr12:96588368..96588394,+!p3@ELK3!0.62!9.77!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.77!HOXB2;;chr9:127533519..127533573,-!p2@NR6A1!0.62!4.02!NR6A1;;chr12:54785054..54785072,-!p4@ZNF385A!0.62!3.64!ZNF385A;;chr1:149858461..149858479,+!p1@BOLA1!0.61!1472.68!BOLA1;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.03!ZEB2;;chr10:105110831..105110885,-!p1@PCGF6!0.61!35.24!PCGF6;;chr19:23869970..23869991,-!p1@ZNF675!0.61!13.60!ZNF675;;chr19:12405606..12405629,-!p2@ZNF44!0.61!6.70!ZNF44;;chr2:217277271..217277290,+!p3@SMARCAL1!0.61!5.36!SMARCAL1;;chr10:45496320..45496336,+!p3@ZNF22!0.61!3.06!ZNF22;;chr12:54694653..54694672,-!p2@NFE2!0.61!3.06!NFE2;;chr19:21106049..21106072,+!p1@ZNF85!0.60!19.53!ZNF85;;chr15:57511609..57511651,+!p2@TCF12!0.60!5.55!TCF12;;chr3:168865194..168865245,-!p3@MECOM!0.60!4.02!MECOM;;chr12:11802600..11802685,+!p1@ETV6!0.59!52.86!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!0.59!20.49!NCOA4;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.28!GLI2;;chr19:19976714..19976729,+!p3@ZNF253!0.59!6.13!ZNF253;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.94!E2F2;;chr10:94449649..94449664,+!p3@HHEX!0.59!4.60!HHEX;;chr19:12163769..12163798,-!p1@ZNF878!0.59!4.02!ZNF878;;chr17:45810594..45810608,+!p1@TBX21!0.59!2.87!TBX21;;chr18:55102598..55102623,+!p1@ONECUT2!0.59!2.87!ONECUT2;;chr6:15246741..15246765,+!p9@JARID2!0.59!2.87!JARID2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.58!54.00!MIS18BP1;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.79!MXD3;;chr12:11802575..11802592,+!p6@ETV6!0.58!4.40!ETV6;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.17!TCF19;;chr11:130184470..130184533,-!p2@ZBTB44!0.57!8.62!ZBTB44;;chr19:13213634..13213645,-!p8@LYL1!0.57!2.68!LYL1;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.68!KDM5D;;chr19:6110474..6110551,-!p1@RFX2!0.56!19.53!RFX2;;chr16:331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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10789-110H6
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
+|library_id=CNhs13241
+|library_id_phase_based=2:CNhs13241
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10789
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10789
 |name=acute myeloid leukemia (FAB M0) cell line:Kasumi-3
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13241,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=1.07514
 |sample_age=57
+|sample_category=cell lines
 |sample_cell_catalog=jcrb1004
 |sample_cell_line=Kasumi-3
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10789-110H6;search_select_hide=table117:FF:10789-110H6
 }}

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FF:10789-110H6: Difference between revisions

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Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0