FF:10790-110H7: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	teratocarcinoma cell line:NCC-IT-A3
Species:	Human (Homo sapiens)
Library ID:	CNhs11878
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mediastinum
dev stage	NA
sex	male
age	24
cell type	germ cell
cell line	NCC-IT-A3
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005042

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11878		CAGE		DRX008019		DRR008891

Accession ID Hg19

Library id		BAM		CTSS
CNhs11878		DRZ000316		DRZ001701

Accession ID Hg38

Library id		BAM		CTSS
CNhs11878		DRZ011666		DRZ013051

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.325
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.603
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0.0858
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.0858
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0.0225
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0658
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0655
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.045
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.045
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.788
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.216
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0303
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.321
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11878

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.09182e-4
MA0003.1	MA0003.1	0.0849
MA0004.1	MA0004.1	0.967
MA0006.1	MA0006.1	0.884
MA0007.1	MA0007.1	0.977
MA0009.1	MA0009.1	0.615
MA0014.1	MA0014.1	0.787
MA0017.1	MA0017.1	0.16
MA0018.2	MA0018.2	0.883
MA0019.1	MA0019.1	0.435
MA0024.1	MA0024.1	2.57259e-6
MA0025.1	MA0025.1	0.26
MA0027.1	MA0027.1	0.735
MA0028.1	MA0028.1	4.21713e-5
MA0029.1	MA0029.1	0.661
MA0030.1	MA0030.1	0.145
MA0031.1	MA0031.1	0.163
MA0035.2	MA0035.2	0.861
MA0038.1	MA0038.1	1.95481e-4
MA0039.2	MA0039.2	0.0294
MA0040.1	MA0040.1	0.208
MA0041.1	MA0041.1	0.149
MA0042.1	MA0042.1	0.424
MA0043.1	MA0043.1	0.767
MA0046.1	MA0046.1	0.191
MA0047.2	MA0047.2	0.00813
MA0048.1	MA0048.1	0.222
MA0050.1	MA0050.1	3.13132e-8
MA0051.1	MA0051.1	3.99188e-7
MA0052.1	MA0052.1	0.00117
MA0055.1	MA0055.1	0.0805
MA0057.1	MA0057.1	0.441
MA0058.1	MA0058.1	0.807
MA0059.1	MA0059.1	0.997
MA0060.1	MA0060.1	2.15902e-15
MA0061.1	MA0061.1	0.00667
MA0062.2	MA0062.2	8.07042e-4
MA0065.2	MA0065.2	0.924
MA0066.1	MA0066.1	0.493
MA0067.1	MA0067.1	0.341
MA0068.1	MA0068.1	0.00634
MA0069.1	MA0069.1	0.44
MA0070.1	MA0070.1	0.568
MA0071.1	MA0071.1	0.692
MA0072.1	MA0072.1	0.598
MA0073.1	MA0073.1	0.536
MA0074.1	MA0074.1	0.167
MA0076.1	MA0076.1	2.31886e-5
MA0077.1	MA0077.1	0.117
MA0078.1	MA0078.1	0.75
MA0079.2	MA0079.2	0.532
MA0080.2	MA0080.2	4.96116e-11
MA0081.1	MA0081.1	0.085
MA0083.1	MA0083.1	3.01388e-4
MA0084.1	MA0084.1	0.0955
MA0087.1	MA0087.1	0.697
MA0088.1	MA0088.1	0.215
MA0090.1	MA0090.1	0.114
MA0091.1	MA0091.1	0.0918
MA0092.1	MA0092.1	0.12
MA0093.1	MA0093.1	0.958
MA0099.2	MA0099.2	1.97587e-16
MA0100.1	MA0100.1	0.347
MA0101.1	MA0101.1	0.0751
MA0102.2	MA0102.2	0.00105
MA0103.1	MA0103.1	0.715
MA0104.2	MA0104.2	0.471
MA0105.1	MA0105.1	0.0188
MA0106.1	MA0106.1	0.142
MA0107.1	MA0107.1	0.00706
MA0108.2	MA0108.2	0.608
MA0111.1	MA0111.1	0.731
MA0112.2	MA0112.2	2.79118e-4
MA0113.1	MA0113.1	0.0808
MA0114.1	MA0114.1	0.78
MA0115.1	MA0115.1	0.0923
MA0116.1	MA0116.1	0.173
MA0117.1	MA0117.1	0.915
MA0119.1	MA0119.1	0.0415
MA0122.1	MA0122.1	0.973
MA0124.1	MA0124.1	0.417
MA0125.1	MA0125.1	0.396
MA0131.1	MA0131.1	0.166
MA0135.1	MA0135.1	0.0531
MA0136.1	MA0136.1	2.7811e-7
MA0137.2	MA0137.2	0.266
MA0138.2	MA0138.2	0.0624
MA0139.1	MA0139.1	0.628
MA0140.1	MA0140.1	0.789
MA0141.1	MA0141.1	0.756
MA0142.1	MA0142.1	5.2373e-18
MA0143.1	MA0143.1	8.14698e-6
MA0144.1	MA0144.1	0.0395
MA0145.1	MA0145.1	0.295
MA0146.1	MA0146.1	0.494
MA0147.1	MA0147.1	0.344
MA0148.1	MA0148.1	0.0525
MA0149.1	MA0149.1	0.981
MA0150.1	MA0150.1	0.00203
MA0152.1	MA0152.1	0.708
MA0153.1	MA0153.1	0.13
MA0154.1	MA0154.1	0.043
MA0155.1	MA0155.1	0.422
MA0156.1	MA0156.1	0.00706
MA0157.1	MA0157.1	0.208
MA0159.1	MA0159.1	0.384
MA0160.1	MA0160.1	0.337
MA0162.1	MA0162.1	0.449
MA0163.1	MA0163.1	0.0459
MA0164.1	MA0164.1	0.934
MA0258.1	MA0258.1	0.171
MA0259.1	MA0259.1	0.201

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11878

Novel motif	Logo	P-value
1	1	0.46
10	10	0.631
100	100	0.481
101	101	0.955
102	102	0.875
103	103	0.0322
104	104	0.592
105	105	0.159
106	106	0.00259
107	107	0.19
108	108	0.824
109	109	0.264
11	11	0.384
110	110	0.572
111	111	0.648
112	112	0.112
113	113	0.0541
114	114	0.184
115	115	0.874
116	116	0.893
117	117	0.973
118	118	0.73
119	119	0.32
12	12	0.603
120	120	0.596
121	121	0.275
122	122	0.687
123	123	0.205
124	124	0.548
125	125	0.163
126	126	0.463
127	127	0.282
128	128	0.216
129	129	0.316
13	13	0.291
130	130	0.121
131	131	0.48
132	132	0.732
133	133	0.196
134	134	0.41
135	135	0.0143
136	136	0.207
137	137	0.478
138	138	0.167
139	139	0.0418
14	14	0.804
140	140	0.609
141	141	0.773
142	142	0.817
143	143	0.0535
144	144	0.892
145	145	0.302
146	146	0.261
147	147	0.879
148	148	0.081
149	149	0.0365
15	15	0.183
150	150	0.586
151	151	0.0839
152	152	0.0349
153	153	0.617
154	154	0.908
155	155	0.992
156	156	0.274
157	157	0.729
158	158	0.376
159	159	0.245
16	16	0.25
160	160	0.212
161	161	0.55
162	162	0.862
163	163	0.215
164	164	0.322
165	165	0.454
166	166	0.729
167	167	0.542
168	168	0.21
169	169	0.0124
17	17	0.196
18	18	0.168
19	19	0.163
2	2	0.12
20	20	0.656
21	21	0.819
22	22	0.107
23	23	0.0091
24	24	0.622
25	25	0.77
26	26	0.63
27	27	0.0869
28	28	0.715
29	29	0.956
3	3	0.518
30	30	0.331
31	31	0.605
32	32	0.0243
33	33	0.911
34	34	0.332
35	35	0.84
36	36	0.948
37	37	0.317
38	38	0.417
39	39	0.426
4	4	0.803
40	40	0.898
41	41	0.197
42	42	0.816
43	43	0.23
44	44	0.909
45	45	0.24
46	46	0.114
47	47	0.558
48	48	0.657
49	49	0.329
5	5	0.305
50	50	0.947
51	51	0.397
52	52	0.45
53	53	0.86
54	54	0.499
55	55	0.189
56	56	0.497
57	57	0.846
58	58	0.205
59	59	0.0676
6	6	0.475
60	60	0.0738
61	61	0.734
62	62	0.0999
63	63	0.208
64	64	0.583
65	65	0.0546
66	66	0.109
67	67	0.733
68	68	0.158
69	69	0.626
7	7	0.919
70	70	0.0192
71	71	0.146
72	72	0.424
73	73	0.0685
74	74	0.832
75	75	0.931
76	76	0.701
77	77	0.075
78	78	0.717
79	79	0.0227
8	8	0.278
80	80	0.0227
81	81	0.574
82	82	0.104
83	83	0.633
84	84	0.509
85	85	0.0212
86	86	0.587
87	87	0.519
88	88	0.42
89	89	0.0154
9	9	0.0419
90	90	0.72
91	91	0.513
92	92	0.032
93	93	0.384
94	94	0.281
95	95	0.399
96	96	0.197
97	97	0.761
98	98	0.927
99	99	0.986

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11878

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007912
+|DRA_sample_Accession=CAGE@SAMD00005042
+|accession_numbers=CAGE;DRX008019;DRR008891;DRZ000316;DRZ001701;DRZ011666;DRZ013051
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.19!154.83!SOX2;;chr6:10415484..10415508,-!p3@TFAP2A!2.15!140.84!TFAP2A;;chrX:136648279..136648295,+!p1@ZIC3!2.14!136.58!ZIC3;;chr20:31350184..31350200,+!p1@DNMT3B!2.10!251.75!DNMT3B;;chrX:136648643..136648711,+!p2@ZIC3!1.98!93.53!ZIC3;;chr14:57277178..57277203,-!p1@OTX2!1.89!76.27!OTX2;;chr6:31138439..31138475,-!p1@POU5F1!1.88!74.19!POU5F1;;chr5:2751762..2751784,-!p1@IRX2!1.87!73.10!IRX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.84!83.15!TFAP2A;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.78!58.68!NANOGP1;;chr1:164528687..164528711,+!p6@PBX1!1.73!61.63!PBX1;;chr3:181429741..181429767,+!p2@SOX2!1.73!52.88!SOX2;;chr5:153857778..153857794,-!p1@HAND1!1.72!51.35!HAND1;;chr15:57511609..57511651,+!p2@TCF12!1.68!77.25!TCF12;;chrX:136648297..136648319,+!p3@ZIC3!1.68!46.77!ZIC3;;chr5:2751785..2751808,-!p2@IRX2!1.66!44.91!IRX2;;chr12:19556998..19557013,+!p6@AEBP2!1.62!40.97!AEBP2;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.57!TFAP2A;;chr8:70983476..70983493,-!p1@PRDM14!1.54!33.33!PRDM14;;chr8:37963466..37963506,+!p3@ASH2L!1.53!40.87!ASH2L;;chr2:16080659..16080685,+!p1@MYCN!1.52!32.34!MYCN;;chr10:135043702..135043729,+!p1@UTF1!1.47!28.30!UTF1;;chr2:16081912..16081931,+!p2@MYCN!1.44!26.77!MYCN;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.90!DLX5;;chr4:188916918..188916942,+!p1@ZFP42!1.41!24.91!ZFP42;;chr1:151032922..151032951,+!p2@MLLT11!1.40!39.12!MLLT11;;chr6:391743..391759,+!p1@IRF4!1.40!24.26!IRF4;;chr20:50418972..50419029,-!p1@SALL4!1.38!22.95!SALL4;;chrX:136650899..136650918,+!p7@ZIC3!1.36!21.96!ZIC3;;chr5:3595977..3595999,+!p1@IRX1!1.36!21.74!IRX1;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr2:25475120..25475176,-!p2@DNMT3A!1.35!28.96!DNMT3A;;chr1:158975744..158975769,+!p10@IFI16!1.33!20.54!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.56!ZNF90;;chr2:5832508..5832524,+!p1@SOX11!1.32!20.00!SOX11;;chr19:22193731..22193751,-!p1@ZNF208!1.31!19.45!ZNF208;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.30!177.34!ZNF595;;chr4:299227..299272,-!p1@ZNF732!1.30!18.90!ZNF732;;chr12:19556960..19556982,+!p10@AEBP2!1.27!17.81!AEBP2;;chr14:57272369..57272391,-!p2@OTX2!1.26!17.37!OTX2;;chr12:7941989..7942014,+!p1@NANOG!1.26!17.15!NANOG;;chr1:247171316..247171336,-!p3@ZNF695!1.25!25.02!ZNF695;;chr8:70983443..70983460,-!p2@PRDM14!1.25!16.61!PRDM14;;chrX:136648768..136648781,+!p6@ZIC3!1.22!15.41!ZIC3;;chr12:66218183..66218209,+!p4@HMGA2!1.19!27.43!HMGA2;;chrX:131547625..131547644,-!p4@MBNL3!1.19!14.64!MBNL3;;chr13:95364784..95364806,-!p1@SOX21!1.19!14.53!SOX21;;chr8:37963407..37963454,+!p2@ASH2L!1.18!41.96!ASH2L;;chr9:114287433..114287513,+!p1@ZNF483!1.18!36.82!ZNF483;;chrX:136648554..136648576,+!p4@ZIC3!1.18!14.10!ZIC3;;chr2:60780607..60780624,-!p2@BCL11A!1.17!41.74!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!1.15!21.85!ZNF492;;chr14:90085820..90085840,-!p6@FOXN3!1.15!13.11!FOXN3;;chr20:50419055..50419066,-!p3@SALL4!1.14!12.89!SALL4;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.90!MLLT11;;chr17:41623009..41623053,-!p4@ETV4!1.11!19.45!ETV4;;chr17:7493405..7493419,-!p1@SOX15!1.11!11.91!SOX15;;chr2:88752207..88752218,-!p1@FOXI3!1.11!11.91!FOXI3;;chrX:136648753..136648767,+!p5@ZIC3!1.10!11.47!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.08!10.93!DNMT3A;;chr5:3595934..3595957,+!p2@IRX1!1.07!10.82!IRX1;;chr1:247171347..247171366,-!p2@ZNF695!1.06!19.34!ZNF695;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.60!IRX1;;chrX:129402866..129402880,-!p1@ZNF280C!1.05!59.99!ZNF280C;;chr5:124082322..124082364,-!p1@ZNF608!1.05!26.44!ZNF608;;chr2:119604456..119604501,-!p2@EN1!1.04!10.05!EN1;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.62!ZNF680;;chrX:136648735..136648747,+!p9@ZIC3!1.03!9.83!ZIC3;;chr17:46132044..46132080,+!p4@NFE2L1!1.03!9.72!NFE2L1;;chr2:42795745..42795824,+!p1@MTA3!1.02!88.51!MTA3;;chr2:16082155..16082169,+!p3@MYCN!1.02!9.51!MYCN;;chr3:57234000..57234014,-!p1@HESX1!1.02!9.51!HESX1;;chrX:136648807..136648822,+!p8@ZIC3!1.02!9.51!ZIC3;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.16!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.01!20.54!SOHLH2;;chr2:60780753..60780800,-!p1@BCL11A!1.00!45.02!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.66!ETV4;;chrX:84499081..84499115,+!p2@ZNF711!1.00!13.55!ZNF711;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.22!HMGA2;;chr6:15246261..15246312,+!p1@JARID2!0.99!216.78!JARID2;;chr19:23433144..23433204,-!p1@ZNF724P!0.99!39.88!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.99!9.51!HMGA2;;chr7:64363638..64363667,+!p1@ZNF273!0.98!44.03!ZNF273;;chr17:41622925..41622976,-!p3@ETV4!0.98!13.00!ETV4;;chr1:151032957..151032968,+!p7@MLLT11!0.98!8.52!MLLT11;;chr18:56530136..56530199,+!p3@ZNF532!0.97!12.78!ZNF532;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.41!ZNF727;;chr19:58545454..58545498,+!p1@ZSCAN1!0.97!8.30!ZSCAN1;;chr12:7079780..7079791,-!p2@PHB2!0.96!43.71!PHB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.96!31.80!HNRPK;;chr19:58400344..58400364,-!p2@ZNF814!0.96!12.02!ZNF814;;chr6:1378155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@@ Line 38: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10790-110H7
 |is_a=EFO:0002091;;FF:0000210;;FF:0100306
 |is_obsolete=
-|library_ids=CNhs11878
+|library_id=CNhs11878
+|library_id_phase_based=2:CNhs11878
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10790
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10790
 |name=teratocarcinoma cell line:NCC-IT-A3
 |namespace=FANTOM5
@@ Line 47: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11878,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10790-110H7;search_select_hide=table117:FF:10790-110H7
-|DRA_sample_Accession=CAGE@DRS007912
-|accession_numbers=DRX008019;DRR008891;DRZ000316;DRZ001701;CAGE
-|library_id=CNhs11878
 }}

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FF:10790-110H7: Difference between revisions

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Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0