FF:10792-110H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005413 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007804;DRR008676;DRZ000101;DRZ001486;DRZ011451;DRZ012836 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10792-110H9 | |id=FF:10792-110H9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101883 | ||
|is_obsolete= | |||
|library_id=CNhs13052 | |||
|library_id_phase_based=2:CNhs13052 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10792 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10792 | |||
|name=acute myeloid leukemia (FAB M2) cell line:Kasumi-6 | |name=acute myeloid leukemia (FAB M2) cell line:Kasumi-6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13052,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13052,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0537401810315495,0,0,0,0,0.10506389932175,0,-0.112662868920916,0.535430112384809,0,0,0,0,0,0,0,0,0,0,0.193568230737617,0,0,-0.153323010348428,0,0,0,0,0,0.413441113376821,0,0,0.41447036896765,0,0,0,0,0,0,0,0,0,0,0,0,-0.0307039883051056,0.27935148601805,0,0,0,0,0,0,0,0.0295251599187151,0,0,0,0.547426958746512,0,-0.0201222447497941,0,0.0965758694950116,0,0,0.0962246035245198,0,0,0,0,0,0,0,0,0,0,0.326988596678969,0,0,0,0,0,0,0,0,0,0.240847606889758,0,0,-0.0142351943053385,-0.354401394550498,0,0,0,-0.0584468268118252,0.0248574374403157,0.0537401810315495,0,0,0.107480362063099,0.0955328794999103,0.297843745170525,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,-0.0426334128909115,0.107480362063099,0,0,-0.036034780460373,-0.14242554553225,0,0,0.107480362063099,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.107480362063099,0.0955328794999103,0,0.107480362063099,0,0,0.107480362063099,0,0,0.265381929408136,0,0,0,-0.247178875285564,0.294069554014879,-0.474086218752008,-0.143515142523472,0.0967841153688085,0,-0.330494971540762,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.0727167655109672,0,0.08266011675383,0.0215163657805616,0,0.0162078960427233,-0.0683442610773682,0,0,0,0,-0.0407655892614482,0,-0.0133991217306417,0.110848062414199,-0.221611588102807,-0.445591931887236,-0.055712496781182,0,0,0,-0.442680529505415,-0.179735012927724,0,0,0.0926747484091195,-0.181349618560659,0,0,-0.391044581551635,0,-0.289779512696191,-0.0604397418968705,0,0.175200875526783,0,0,0,0,0,0.265381929408136,0,0,0.107480362063099,0,0,-0.0574934668214365,0,0.193568230737617,0,0,0,-0.377742730654885,0,0,-0.373286155956567,-0.0216643979831024,-0.0005159229300597,-0.256708296629493,0,0.0785421873745528,-0.0499040711629685,-0.265858783948055,-0.00543141679385983,-0.147401849371139,-0.189981719549847,0,0.103471775541817,-0.592704398376395,-0.00322998646286765,-0.156750749794891,0.046061397125747,-1.2314085082871,-0.301920372252247,0,0,0,-0.499761857829294,0,0,-0.490114714476774,-0.0506897481715375,-0.507493138136226,-0.535026415031877,-0.181333109199089,0.273543280719488,-0.0395325284566706,-0.130447856217626,-0.0114262378898439,0.278684213193702,0,0.511399009644878,-0.0877514257027229,-0.0361587110399547,-0.313802426834954,0.371156501819488,0,-0.218595532402845,-0.0683442610773682,0.190465957192233,-0.716542508809737,0.078557673394843,0,-0.0404476547983361,-0.251788634192443,0,0,0.380931914384466,0,0,-0.0536667731616995,-0.539492143030166,0.239254118716824,0,0.0323872104100591,-0.00341377906324364,-0.0415865755301475,0,-0.0233528816147619,-0.146009897457394,-0.0633583527006759,0.281526133611584,0,-0.215314410462589,0.0203390110354597,-0.234105308351445,0.0497148748806313,-0.0584468268118252,0.108171966689433,0.0314095644659536,-0.0588507648595726,-0.681459502727128,0,-0.0881268324752877,-0.210162025788965,-0.88354475051838,0.0375027483620486,-0.0472292895463378,-0.420035605890087,0,-0.245384524045765,0,-0.203872110056206,0,0.357734315540021,-0.54043375147324,0.941380684903344,-0.061110487031788,0,0.129641698029054,-0.788130937773974,0,-0.27238437317198,-0.0418423631493412,0,0.278542116987348,-0.697695966512583,0.0845348351789631,-0.138989456679195,0,-0.790080158389657,0,0,-0.143648634714494,0.432010846252919,0.107480362063099,-0.062402614514024,0.0312354029620624,-0.0928170315504165,-0.00849071137183514,0.380931914384466,0,-0.645700337992725,0,0,0.341619412010162,-0.0636048451378017,-0.354401394550498,0.12760557289771,0,-0.108622809454255,0,0.107480362063099,0.0160404647724411,0.580693721397589,-0.087904590797688,0,0.107480362063099,-0.03542669643783,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,0.341462169693765,-0.247352968153349,0,0,0,0,0,0,0,-0.129406115216345,0,0,-0.376327469741682,0.0820983718202798,0.0705508150611965,0,0,0,0,0.213185797768512,0.0621453673134119,0,-0.131862706497632,0,0,0,0,0.240847606889758,0,0.107480362063099,0.0537401810315495,0.0537401810315495,0.414379223218705,0.210700240766781,0,0,0,0.59568749034105,0,0,0,0,-0.253413822888072,0,0.059013468682344,0.391203057317568,0,-0.268032790228254,0.111986351190775,0,0.135865296384184,-0.125444695097569,-0.420928071105785,0,0,-0.261347131789888,0,0,0.296457656059711,0,0,0,0,0,0,0,0.107480362063099,0,0.453172371617552,0,0,0,0,0,0,0,0,0,0,0,-0.1591794668207,0.0152563054045885,0,0,0,0,0,0,0,-0.0241060230789031,0.0669991466557717,0.000176082191331854,0,0,0,0,0,0,0,0.196060944354065,0,0,0,0,0,0.0965758694950116,0,0.193568230737617,0,0.107480362063099,0.877291994032,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0158387239723488,-0.112662868920916,0,0,0,0,0,0,0,0.0521552984728784,0,0.193568230737617,0,0,0.0796838570286395,0,0,0,0.32411281553283,0,0.10506389932175,0,0,0,0,0,0,0.0967841153688085,0.0537401810315495,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.478347193796957,0,-0.138867502287709,0,0,0,-0.178888171601492,0,0,0,0,0,0,0.183114176132466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0.0992633001610491,0,0,0,0,0,0,0,0.413441113376821,0,0,0.0584914865998318,0,0,0,0,0,0,-0.051922000520525,-0.186436284454339,-0.046047224861832,0,0,0,0.315509535625685,0.547426958746512,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0.0472939252571848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1595568674622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348890732053348,0,0,0,-0.019517998919427,0,0,0,0,0,0,0.107480362063099,0,0.380931914384466,0,0,0,0,0,0,0,0,0,0,0,0.107480362063099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0,0,0,-0.0244969525659285,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592582868240447,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380931914384466,0.410590290092817,0,0,0,0,0.27935148601805,0,0,0,0,0,0,0,0.0093556175669552,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=14.93856 | |rna_weight_ug=14.93856 | ||
|sample_age=64 | |sample_age=64 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb1024 | |sample_cell_catalog=jcrb1024 | ||
|sample_cell_line=Kasumi-6 | |sample_cell_line=Kasumi-6 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.69077293423162e-252!GO:0043227;membrane-bound organelle;3.52118020173159e-229!GO:0043231;intracellular membrane-bound organelle;9.01356705882369e-229!GO:0043226;organelle;3.96713494085621e-211!GO:0043229;intracellular organelle;1.32217045966673e-210!GO:0005737;cytoplasm;1.48885151703495e-153!GO:0044422;organelle part;3.96733931330812e-148!GO:0044446;intracellular organelle part;1.77563477469548e-146!GO:0044237;cellular metabolic process;7.92285934772335e-125!GO:0044238;primary metabolic process;3.06393944016608e-121!GO:0044444;cytoplasmic part;2.49876331686504e-118!GO:0005634;nucleus;1.00760784588798e-109!GO:0043170;macromolecule metabolic process;1.81769274115162e-107!GO:0032991;macromolecular complex;3.86028525156606e-103!GO:0030529;ribonucleoprotein complex;1.79287822947436e-91!GO:0044428;nuclear part;5.4012316813768e-89!GO:0043233;organelle lumen;3.10152735366462e-87!GO:0031974;membrane-enclosed lumen;3.10152735366462e-87!GO:0003723;RNA binding;2.18972480263776e-83!GO:0005739;mitochondrion;6.38534302454188e-73!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55135717652189e-69!GO:0043283;biopolymer metabolic process;1.52866687606212e-67!GO:0010467;gene expression;3.17017006055783e-65!GO:0006396;RNA processing;2.89650788177907e-59!GO:0031981;nuclear lumen;2.13211125409575e-55!GO:0006412;translation;2.89165269770958e-55!GO:0044429;mitochondrial part;3.69440111452276e-51!GO:0005840;ribosome;1.16136438064224e-50!GO:0043234;protein complex;1.82580678206124e-50!GO:0009058;biosynthetic process;4.70642807834634e-50!GO:0016071;mRNA metabolic process;3.24800155212056e-47!GO:0019538;protein metabolic process;2.885546086663e-46!GO:0003676;nucleic acid binding;4.60186571463419e-46!GO:0031090;organelle membrane;9.0102546150345e-46!GO:0031967;organelle envelope;2.3985281783677e-45!GO:0031975;envelope;3.97017997211237e-45!GO:0044249;cellular biosynthetic process;3.9701875636741e-45!GO:0009059;macromolecule biosynthetic process;4.55768510722237e-45!GO:0003735;structural constituent of ribosome;1.70184835531793e-44!GO:0005515;protein binding;8.00979842970761e-44!GO:0006259;DNA metabolic process;2.22529916126573e-43!GO:0044260;cellular macromolecule metabolic process;1.76077060334765e-42!GO:0044267;cellular protein metabolic process;3.59117024390582e-42!GO:0008380;RNA splicing;2.73024735725309e-41!GO:0006397;mRNA processing;3.54475746371899e-41!GO:0033036;macromolecule localization;6.02663401099288e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.16278779583094e-37!GO:0033279;ribosomal subunit;2.44108030568675e-37!GO:0015031;protein transport;4.52862150420335e-37!GO:0005829;cytosol;1.55434148848738e-36!GO:0045184;establishment of protein localization;6.78744966253103e-35!GO:0008104;protein localization;1.1718434554603e-34!GO:0005654;nucleoplasm;1.47299874476791e-34!GO:0016070;RNA metabolic process;7.75657481463962e-34!GO:0016043;cellular component organization and biogenesis;5.66005807333997e-33!GO:0005740;mitochondrial envelope;1.69648382555643e-32!GO:0065003;macromolecular complex assembly;2.46648393070889e-31!GO:0005681;spliceosome;3.3126781603243e-31!GO:0019866;organelle inner membrane;6.25726387520418e-31!GO:0006996;organelle organization and biogenesis;2.8275281786599e-30!GO:0031966;mitochondrial membrane;6.35413913101732e-30!GO:0046907;intracellular transport;5.52328186628303e-29!GO:0005743;mitochondrial inner membrane;2.11561634334195e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.74125893537977e-28!GO:0006886;intracellular protein transport;4.0891458140986e-27!GO:0022607;cellular component assembly;9.39594312333417e-27!GO:0043228;non-membrane-bound organelle;2.02392225895661e-26!GO:0043232;intracellular non-membrane-bound organelle;2.02392225895661e-26!GO:0000166;nucleotide binding;6.33188160487047e-26!GO:0044451;nucleoplasm part;9.49129515443787e-26!GO:0044445;cytosolic part;2.17283692243342e-25!GO:0006974;response to DNA damage stimulus;5.89125655914409e-25!GO:0005694;chromosome;9.1402016181511e-24!GO:0007049;cell cycle;1.16266055339617e-23!GO:0006281;DNA repair;1.99080149339879e-23!GO:0006119;oxidative phosphorylation;4.37203689342409e-23!GO:0051649;establishment of cellular localization;2.82007856080773e-22!GO:0031980;mitochondrial lumen;3.276759093584e-22!GO:0005759;mitochondrial matrix;3.276759093584e-22!GO:0005730;nucleolus;3.57697118303021e-22!GO:0051641;cellular localization;1.47145814611532e-21!GO:0044455;mitochondrial membrane part;1.99944293440834e-21!GO:0044427;chromosomal part;5.09742128833323e-21!GO:0016874;ligase activity;1.08037366636985e-20!GO:0022618;protein-RNA complex assembly;1.64596891899985e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.5441168172316e-20!GO:0016462;pyrophosphatase activity;4.5722828827827e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.20513059135771e-20!GO:0051276;chromosome organization and biogenesis;5.35425639698065e-20!GO:0015935;small ribosomal subunit;3.17199056511177e-19!GO:0017111;nucleoside-triphosphatase activity;3.45898042503215e-19!GO:0022402;cell cycle process;4.21607358671039e-19!GO:0015934;large ribosomal subunit;4.56257443989764e-19!GO:0006457;protein folding;2.18035838546991e-18!GO:0000278;mitotic cell cycle;4.19779366213067e-18!GO:0016887;ATPase activity;8.06142661382311e-18!GO:0032553;ribonucleotide binding;1.6517829964176e-17!GO:0032555;purine ribonucleotide binding;1.6517829964176e-17!GO:0042254;ribosome biogenesis and assembly;1.79110484705209e-17!GO:0044265;cellular macromolecule catabolic process;1.85878843481132e-17!GO:0005524;ATP binding;1.92849697501543e-17!GO:0042623;ATPase activity, coupled;3.32821701288189e-17!GO:0012505;endomembrane system;3.75224418740722e-17!GO:0005746;mitochondrial respiratory chain;4.63285708035096e-17!GO:0017076;purine nucleotide binding;4.98896133243311e-17!GO:0032559;adenyl ribonucleotide binding;5.42315914458106e-17!GO:0006512;ubiquitin cycle;7.59769054868031e-17!GO:0048770;pigment granule;7.59769054868031e-17!GO:0042470;melanosome;7.59769054868031e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.06504531456363e-16!GO:0009719;response to endogenous stimulus;1.92646795747215e-16!GO:0006260;DNA replication;2.54221557016748e-16!GO:0030554;adenyl nucleotide binding;2.8199432269293e-16!GO:0044248;cellular catabolic process;3.75123634286161e-16!GO:0006323;DNA packaging;4.33932136358735e-16!GO:0008135;translation factor activity, nucleic acid binding;8.38053432573071e-16!GO:0043285;biopolymer catabolic process;1.06498767129997e-15!GO:0016604;nuclear body;1.15842356789861e-15!GO:0051186;cofactor metabolic process;1.26468763757982e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.79162448074746e-15!GO:0000375;RNA splicing, via transesterification reactions;1.79162448074746e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.79162448074746e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.19659461285812e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.3236451099289e-15!GO:0003954;NADH dehydrogenase activity;3.3236451099289e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.3236451099289e-15!GO:0009057;macromolecule catabolic process;6.10259826994286e-15!GO:0006605;protein targeting;1.89652806626341e-14!GO:0005761;mitochondrial ribosome;1.89652806626341e-14!GO:0000313;organellar ribosome;1.89652806626341e-14!GO:0051301;cell division;2.00629233826205e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.61714062340958e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.4462787995105e-14!GO:0031965;nuclear membrane;3.91164264614616e-14!GO:0044432;endoplasmic reticulum part;4.67888338300477e-14!GO:0022403;cell cycle phase;6.3387229214272e-14!GO:0005635;nuclear envelope;7.53240660129376e-14!GO:0000087;M phase of mitotic cell cycle;7.9703810452861e-14!GO:0006511;ubiquitin-dependent protein catabolic process;8.13988450431692e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.25450147384407e-14!GO:0019941;modification-dependent protein catabolic process;8.65369261801558e-14!GO:0043632;modification-dependent macromolecule catabolic process;8.65369261801558e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.79179691646223e-14!GO:0044453;nuclear membrane part;1.05079609477394e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.50689597253053e-13!GO:0042773;ATP synthesis coupled electron transport;1.50689597253053e-13!GO:0007067;mitosis;1.81565690814164e-13!GO:0044257;cellular protein catabolic process;1.96657088430725e-13!GO:0000785;chromatin;1.98104268118246e-13!GO:0004386;helicase activity;2.19976335388347e-13!GO:0051082;unfolded protein binding;2.39653813630745e-13!GO:0008134;transcription factor binding;2.87695064411217e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.18135108563215e-13!GO:0045271;respiratory chain complex I;3.18135108563215e-13!GO:0005747;mitochondrial respiratory chain complex I;3.18135108563215e-13!GO:0003743;translation initiation factor activity;3.18922509647349e-13!GO:0005783;endoplasmic reticulum;5.59503369396695e-13!GO:0006413;translational initiation;6.62013615604159e-13!GO:0006732;coenzyme metabolic process;6.85617144978853e-13!GO:0043412;biopolymer modification;8.58497545554939e-13!GO:0016607;nuclear speck;9.48888258263745e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.9548465947031e-13!GO:0009259;ribonucleotide metabolic process;1.03293320578731e-12!GO:0006163;purine nucleotide metabolic process;1.90550197116347e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.1106735399738e-12!GO:0050657;nucleic acid transport;2.44706565917435e-12!GO:0051236;establishment of RNA localization;2.44706565917435e-12!GO:0050658;RNA transport;2.44706565917435e-12!GO:0006399;tRNA metabolic process;2.89503423626481e-12!GO:0006403;RNA localization;3.61051596796719e-12!GO:0006164;purine nucleotide biosynthetic process;4.54541379847935e-12!GO:0006364;rRNA processing;4.94360892905221e-12!GO:0009260;ribonucleotide biosynthetic process;5.69808497644202e-12!GO:0016568;chromatin modification;8.99379275518918e-12!GO:0006446;regulation of translational initiation;1.10716781190821e-11!GO:0008026;ATP-dependent helicase activity;1.10716781190821e-11!GO:0016072;rRNA metabolic process;1.11300963481147e-11!GO:0009150;purine ribonucleotide metabolic process;1.73655206784802e-11!GO:0019222;regulation of metabolic process;2.22777756851803e-11!GO:0005643;nuclear pore;2.37074073600235e-11!GO:0000279;M phase;2.89912142591029e-11!GO:0006915;apoptosis;3.86640642742655e-11!GO:0012501;programmed cell death;4.07866409450766e-11!GO:0009152;purine ribonucleotide biosynthetic process;4.12241820225833e-11!GO:0065002;intracellular protein transport across a membrane;4.33113761333448e-11!GO:0006333;chromatin assembly or disassembly;4.58157771147633e-11!GO:0030163;protein catabolic process;4.74048343398406e-11!GO:0051726;regulation of cell cycle;5.66598390195421e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.91588253910954e-11!GO:0000074;regulation of progression through cell cycle;1.20709077256192e-10!GO:0006464;protein modification process;1.25210093899063e-10!GO:0005789;endoplasmic reticulum membrane;2.13708772632045e-10!GO:0051028;mRNA transport;2.2511370724938e-10!GO:0006913;nucleocytoplasmic transport;2.6655596971606e-10!GO:0008565;protein transporter activity;3.48345747545683e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.78288782864924e-10!GO:0016779;nucleotidyltransferase activity;4.2994779195731e-10!GO:0043566;structure-specific DNA binding;4.36311502028961e-10!GO:0008219;cell death;5.43752519131686e-10!GO:0016265;death;5.43752519131686e-10!GO:0051169;nuclear transport;5.55376502422315e-10!GO:0065004;protein-DNA complex assembly;5.8557911542787e-10!GO:0050794;regulation of cellular process;6.20401843424664e-10!GO:0048193;Golgi vesicle transport;7.0880028282378e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.19748846150729e-10!GO:0051188;cofactor biosynthetic process;7.38210363589144e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.89177215630917e-10!GO:0003697;single-stranded DNA binding;1.13974366615266e-09!GO:0046930;pore complex;1.18814660051592e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.27904265884999e-09!GO:0009056;catabolic process;1.28938462873489e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.91593682430481e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.91593682430481e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.91593682430481e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.03525361711491e-09!GO:0031323;regulation of cellular metabolic process;3.58101859751255e-09!GO:0043038;amino acid activation;3.91146724506398e-09!GO:0006418;tRNA aminoacylation for protein translation;3.91146724506398e-09!GO:0043039;tRNA aminoacylation;3.91146724506398e-09!GO:0016192;vesicle-mediated transport;4.06738496151407e-09!GO:0019829;cation-transporting ATPase activity;4.3389114559557e-09!GO:0016787;hydrolase activity;4.69862000157481e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.69981569109491e-09!GO:0009141;nucleoside triphosphate metabolic process;5.00145055633401e-09!GO:0003712;transcription cofactor activity;5.4652291451628e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.4652291451628e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.4652291451628e-09!GO:0006261;DNA-dependent DNA replication;5.58966979722229e-09!GO:0005794;Golgi apparatus;7.42236159818139e-09!GO:0015986;ATP synthesis coupled proton transport;7.49608388830494e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.49608388830494e-09!GO:0009117;nucleotide metabolic process;7.50522357017664e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.68207577034309e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.55350250522883e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.55350250522883e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14971937247361e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14971937247361e-08!GO:0017038;protein import;2.24674434668773e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.62605055608207e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.66732432253529e-08!GO:0043687;post-translational protein modification;3.13119697608147e-08!GO:0009060;aerobic respiration;3.42098740279114e-08!GO:0009055;electron carrier activity;3.68745476946131e-08!GO:0006350;transcription;5.21077376574623e-08!GO:0051246;regulation of protein metabolic process;5.93449926910813e-08!GO:0006754;ATP biosynthetic process;6.25199779489137e-08!GO:0006753;nucleoside phosphate metabolic process;6.25199779489137e-08!GO:0046034;ATP metabolic process;6.92041092630199e-08!GO:0008639;small protein conjugating enzyme activity;7.17766378062055e-08!GO:0005793;ER-Golgi intermediate compartment;8.17200570196147e-08!GO:0007005;mitochondrion organization and biogenesis;1.02686832952808e-07!GO:0009108;coenzyme biosynthetic process;1.14401094416046e-07!GO:0010468;regulation of gene expression;1.1482879922549e-07!GO:0016740;transferase activity;1.17263879016074e-07!GO:0004842;ubiquitin-protein ligase activity;1.60178931458591e-07!GO:0045333;cellular respiration;2.10860123291572e-07!GO:0019787;small conjugating protein ligase activity;2.11443011177076e-07!GO:0006334;nucleosome assembly;2.12862926598763e-07!GO:0006461;protein complex assembly;2.42940218241565e-07!GO:0031497;chromatin assembly;3.03477724989058e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.18525739757226e-07!GO:0000245;spliceosome assembly;3.55974954295143e-07!GO:0045259;proton-transporting ATP synthase complex;5.85342659168568e-07!GO:0000775;chromosome, pericentric region;6.16696858855693e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.4171742678724e-07!GO:0003899;DNA-directed RNA polymerase activity;6.70281299665169e-07!GO:0016881;acid-amino acid ligase activity;7.44192218539191e-07!GO:0006752;group transfer coenzyme metabolic process;7.44192218539191e-07!GO:0042981;regulation of apoptosis;7.52642372038659e-07!GO:0006099;tricarboxylic acid cycle;7.72581741579549e-07!GO:0046356;acetyl-CoA catabolic process;7.72581741579549e-07!GO:0006366;transcription from RNA polymerase II promoter;9.3548284024023e-07!GO:0005819;spindle;1.01398144315396e-06!GO:0043067;regulation of programmed cell death;1.13566404343589e-06!GO:0005773;vacuole;1.22853909153071e-06!GO:0003713;transcription coactivator activity;1.26083428338776e-06!GO:0006084;acetyl-CoA metabolic process;1.38893455818518e-06!GO:0000323;lytic vacuole;1.42433244471594e-06!GO:0005764;lysosome;1.42433244471594e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.5361297628176e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60939960949076e-06!GO:0000075;cell cycle checkpoint;1.6895479677782e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.82745414839525e-06!GO:0008654;phospholipid biosynthetic process;2.37266796615581e-06!GO:0005657;replication fork;2.41606585618493e-06!GO:0004298;threonine endopeptidase activity;2.67557128561827e-06!GO:0032446;protein modification by small protein conjugation;2.76416272871606e-06!GO:0009165;nucleotide biosynthetic process;2.79463608719741e-06!GO:0003677;DNA binding;3.05614707422874e-06!GO:0050789;regulation of biological process;3.2677811937753e-06!GO:0005813;centrosome;3.63738610427967e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.71382575366423e-06!GO:0005815;microtubule organizing center;3.79159611427488e-06!GO:0016567;protein ubiquitination;4.68297028820153e-06!GO:0051329;interphase of mitotic cell cycle;4.68297028820153e-06!GO:0003690;double-stranded DNA binding;5.8482662633048e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.93174724733627e-06!GO:0015399;primary active transmembrane transporter activity;5.93174724733627e-06!GO:0008094;DNA-dependent ATPase activity;7.08945831065369e-06!GO:0016491;oxidoreductase activity;7.08945831065369e-06!GO:0006793;phosphorus metabolic process;7.1857990239581e-06!GO:0006796;phosphate metabolic process;7.1857990239581e-06!GO:0009109;coenzyme catabolic process;7.86042383197278e-06!GO:0051325;interphase;8.66403648573436e-06!GO:0048475;coated membrane;9.29159706346874e-06!GO:0030117;membrane coat;9.29159706346874e-06!GO:0003724;RNA helicase activity;9.51553047590753e-06!GO:0006613;cotranslational protein targeting to membrane;1.06450021087953e-05!GO:0016310;phosphorylation;1.2399112555113e-05!GO:0032774;RNA biosynthetic process;1.28891303811789e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.40590070092337e-05!GO:0015630;microtubule cytoskeleton;1.46055135596963e-05!GO:0005667;transcription factor complex;1.55461539413763e-05!GO:0006351;transcription, DNA-dependent;1.72394495013932e-05!GO:0006302;double-strand break repair;1.77890967210294e-05!GO:0006401;RNA catabolic process;1.81458289176252e-05!GO:0016363;nuclear matrix;1.84225472508235e-05!GO:0016853;isomerase activity;2.02468689923872e-05!GO:0051168;nuclear export;2.12961839144051e-05!GO:0044452;nucleolar part;2.50083243506876e-05!GO:0006310;DNA recombination;3.16773211476288e-05!GO:0007051;spindle organization and biogenesis;3.17088697175578e-05!GO:0016563;transcription activator activity;3.19084154731403e-05!GO:0000151;ubiquitin ligase complex;3.27801940095712e-05!GO:0005762;mitochondrial large ribosomal subunit;3.60719942063366e-05!GO:0000315;organellar large ribosomal subunit;3.60719942063366e-05!GO:0051170;nuclear import;3.77797384426667e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.40238894665181e-05!GO:0045449;regulation of transcription;4.41825750733487e-05!GO:0005788;endoplasmic reticulum lumen;4.46804680264648e-05!GO:0006612;protein targeting to membrane;4.97531257051845e-05!GO:0043021;ribonucleoprotein binding;5.14778008290507e-05!GO:0005768;endosome;5.38924669076352e-05!GO:0051187;cofactor catabolic process;5.42599667478612e-05!GO:0006606;protein import into nucleus;5.51096785883226e-05!GO:0005770;late endosome;5.5976741097786e-05!GO:0006916;anti-apoptosis;6.23700307891466e-05!GO:0043069;negative regulation of programmed cell death;6.56162287011462e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.61596929917664e-05!GO:0048523;negative regulation of cellular process;7.70354780643007e-05!GO:0043066;negative regulation of apoptosis;8.05564705217172e-05!GO:0016564;transcription repressor activity;9.2061970108894e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.69412577586348e-05!GO:0019752;carboxylic acid metabolic process;9.73685449874474e-05!GO:0006082;organic acid metabolic process;0.000101866557517814!GO:0046474;glycerophospholipid biosynthetic process;0.000103348113656876!GO:0043681;protein import into mitochondrion;0.000111628579901222!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000113685981706695!GO:0006626;protein targeting to mitochondrion;0.00011966062572637!GO:0006402;mRNA catabolic process;0.000122177375836647!GO:0006839;mitochondrial transport;0.000134880458812576!GO:0006383;transcription from RNA polymerase III promoter;0.00015222860418577!GO:0016741;transferase activity, transferring one-carbon groups;0.00015560472123493!GO:0030120;vesicle coat;0.000161107132859775!GO:0030662;coated vesicle membrane;0.000161107132859775!GO:0046467;membrane lipid biosynthetic process;0.000161608350894002!GO:0008610;lipid biosynthetic process;0.000185262538400266!GO:0008168;methyltransferase activity;0.000194596303793027!GO:0019899;enzyme binding;0.000196833806574187!GO:0043623;cellular protein complex assembly;0.000196833806574187!GO:0008186;RNA-dependent ATPase activity;0.000200599315417012!GO:0015992;proton transport;0.000201636783317087!GO:0045786;negative regulation of progression through cell cycle;0.000205081000134906!GO:0030880;RNA polymerase complex;0.000208992146637708!GO:0004527;exonuclease activity;0.000210681064385082!GO:0006818;hydrogen transport;0.000213795582686331!GO:0008033;tRNA processing;0.000215568140209137!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000215568140209137!GO:0007006;mitochondrial membrane organization and biogenesis;0.000220767526590276!GO:0000314;organellar small ribosomal subunit;0.000230956450772334!GO:0005763;mitochondrial small ribosomal subunit;0.000230956450772334!GO:0031324;negative regulation of cellular metabolic process;0.000237718402536675!GO:0004518;nuclease activity;0.000243424916274097!GO:0031968;organelle outer membrane;0.000245427362319519!GO:0003678;DNA helicase activity;0.000246185481244983!GO:0003682;chromatin binding;0.000247601114838622!GO:0003684;damaged DNA binding;0.000254669735752688!GO:0030384;phosphoinositide metabolic process;0.000271777529310881!GO:0003729;mRNA binding;0.000278968699587116!GO:0006650;glycerophospholipid metabolic process;0.000288150755849385!GO:0047485;protein N-terminus binding;0.000297428923923623!GO:0005885;Arp2/3 protein complex;0.000301987148679738!GO:0019867;outer membrane;0.000318677456692299!GO:0046489;phosphoinositide biosynthetic process;0.000325557743520483!GO:0006417;regulation of translation;0.000330305206797731!GO:0000776;kinetochore;0.000331550700708728!GO:0006091;generation of precursor metabolites and energy;0.000332477240808945!GO:0051427;hormone receptor binding;0.000341711710486375!GO:0006414;translational elongation;0.000344828526434928!GO:0031072;heat shock protein binding;0.000361106246860897!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000382154871408127!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000421577786530271!GO:0046483;heterocycle metabolic process;0.000421577786530271!GO:0015980;energy derivation by oxidation of organic compounds;0.000489644706128026!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000502467080859781!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000502467080859781!GO:0000428;DNA-directed RNA polymerase complex;0.000502467080859781!GO:0032508;DNA duplex unwinding;0.000507256482988452!GO:0032392;DNA geometric change;0.000507256482988452!GO:0006405;RNA export from nucleus;0.000532018327982976!GO:0005741;mitochondrial outer membrane;0.000535374415933298!GO:0048519;negative regulation of biological process;0.000547819081809874!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000551218911148591!GO:0051052;regulation of DNA metabolic process;0.000558198424490519!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000569670740673148!GO:0004004;ATP-dependent RNA helicase activity;0.000592712751040403!GO:0035257;nuclear hormone receptor binding;0.000661426256305313!GO:0022890;inorganic cation transmembrane transporter activity;0.000665076441160843!GO:0044431;Golgi apparatus part;0.000671173785668987!GO:0031982;vesicle;0.000707585023393517!GO:0065009;regulation of a molecular function;0.000727421629354502!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000744210738063436!GO:0045454;cell redox homeostasis;0.000774849235592155!GO:0000786;nucleosome;0.000789697999921117!GO:0006352;transcription initiation;0.000790289894888607!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000794072563793433!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000851634838213269!GO:0006268;DNA unwinding during replication;0.000858255724172296!GO:0006520;amino acid metabolic process;0.000876608101110355!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000981848546968793!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000981848546968793!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000981848546968793!GO:0006355;regulation of transcription, DNA-dependent;0.0010007916501159!GO:0009124;nucleoside monophosphate biosynthetic process;0.00112389277966317!GO:0009123;nucleoside monophosphate metabolic process;0.00112389277966317!GO:0007093;mitotic cell cycle checkpoint;0.00115545483154197!GO:0000082;G1/S transition of mitotic cell cycle;0.00115835675579058!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00125311696552081!GO:0006950;response to stress;0.00126334631994988!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00130670812779444!GO:0000922;spindle pole;0.00130670812779444!GO:0006643;membrane lipid metabolic process;0.00130670812779444!GO:0006338;chromatin remodeling;0.00134041174329274!GO:0000287;magnesium ion binding;0.00138476119745355!GO:0005684;U2-dependent spliceosome;0.00141947920745102!GO:0031988;membrane-bound vesicle;0.00144357083268586!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00156567641441774!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00156567641441774!GO:0016859;cis-trans isomerase activity;0.00157360271408005!GO:0005637;nuclear inner membrane;0.00161593936023242!GO:0031410;cytoplasmic vesicle;0.00161593936023242!GO:0009892;negative regulation of metabolic process;0.00161593936023242!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00173207083489728!GO:0016251;general RNA polymerase II transcription factor activity;0.00173858098414062!GO:0009112;nucleobase metabolic process;0.00173858098414062!GO:0005048;signal sequence binding;0.00173858098414062!GO:0065007;biological regulation;0.00174094414656546!GO:0000049;tRNA binding;0.00182369720313427!GO:0016126;sterol biosynthetic process;0.00187155280178084!GO:0044440;endosomal part;0.00199464291154581!GO:0010008;endosome membrane;0.00199464291154581!GO:0031326;regulation of cellular biosynthetic process;0.00215754504283087!GO:0005758;mitochondrial intermembrane space;0.0022181207744985!GO:0006506;GPI anchor biosynthetic process;0.00223831524743974!GO:0042802;identical protein binding;0.0023933017105756!GO:0007059;chromosome segregation;0.0023933017105756!GO:0000059;protein import into nucleus, docking;0.00243554258214774!GO:0005774;vacuolar membrane;0.00260196536802344!GO:0048500;signal recognition particle;0.00264842940151291!GO:0009161;ribonucleoside monophosphate metabolic process;0.00268007314335322!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00268007314335322!GO:0008047;enzyme activator activity;0.00269360194022233!GO:0007088;regulation of mitosis;0.00277298915428645!GO:0006289;nucleotide-excision repair;0.0028286427481158!GO:0043284;biopolymer biosynthetic process;0.00286521061615767!GO:0005798;Golgi-associated vesicle;0.00307045353025144!GO:0016023;cytoplasmic membrane-bound vesicle;0.00310685976495597!GO:0051252;regulation of RNA metabolic process;0.0035585642492062!GO:0008312;7S RNA binding;0.00356653490119747!GO:0005525;GTP binding;0.00369888311274517!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00371589200064244!GO:0008632;apoptotic program;0.00380130910767627!GO:0006284;base-excision repair;0.00381282562864156!GO:0046914;transition metal ion binding;0.00388003112539625!GO:0006505;GPI anchor metabolic process;0.00397331319409324!GO:0007052;mitotic spindle organization and biogenesis;0.00399701803421224!GO:0008270;zinc ion binding;0.00413193579727062!GO:0044262;cellular carbohydrate metabolic process;0.00418906458137469!GO:0006595;polyamine metabolic process;0.00419452478617643!GO:0006497;protein amino acid lipidation;0.00426511251254648!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00429573735623531!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00432674907620237!GO:0042393;histone binding;0.00435650523698942!GO:0051087;chaperone binding;0.00439965434853326!GO:0007040;lysosome organization and biogenesis;0.00440948273307189!GO:0033367;protein localization in mast cell secretory granule;0.00440948273307189!GO:0033365;protein localization in organelle;0.00440948273307189!GO:0033371;T cell secretory granule organization and biogenesis;0.00440948273307189!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00440948273307189!GO:0033375;protease localization in T cell secretory granule;0.00440948273307189!GO:0042629;mast cell granule;0.00440948273307189!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00440948273307189!GO:0033364;mast cell secretory granule organization and biogenesis;0.00440948273307189!GO:0033380;granzyme B localization in T cell secretory granule;0.00440948273307189!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00440948273307189!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00440948273307189!GO:0033368;protease localization in mast cell secretory granule;0.00440948273307189!GO:0033366;protein localization in secretory granule;0.00440948273307189!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00440948273307189!GO:0033374;protein localization in T cell secretory granule;0.00440948273307189!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00466458902518822!GO:0003711;transcription elongation regulator activity;0.00472170909384297!GO:0009451;RNA modification;0.00474109066198604!GO:0016481;negative regulation of transcription;0.00487395361516405!GO:0003714;transcription corepressor activity;0.00496980052221531!GO:0030118;clathrin coat;0.0052618058980675!GO:0030867;rough endoplasmic reticulum membrane;0.00538037119059955!GO:0045045;secretory pathway;0.00544846331701902!GO:0000139;Golgi membrane;0.00544884113565144!GO:0007243;protein kinase cascade;0.00546799864824083!GO:0044437;vacuolar part;0.00555474853294745!GO:0006672;ceramide metabolic process;0.00556576899494244!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00564531471540269!GO:0045047;protein targeting to ER;0.00564531471540269!GO:0006695;cholesterol biosynthetic process;0.00614509836825597!GO:0044438;microbody part;0.00629439499176476!GO:0044439;peroxisomal part;0.00629439499176476!GO:0000118;histone deacetylase complex;0.0065167550814818!GO:0006220;pyrimidine nucleotide metabolic process;0.00654138304041609!GO:0031124;mRNA 3'-end processing;0.00658423686121961!GO:0051539;4 iron, 4 sulfur cluster binding;0.00659428596054728!GO:0019843;rRNA binding;0.00684769626293407!GO:0043596;nuclear replication fork;0.00693950115710068!GO:0006891;intra-Golgi vesicle-mediated transport;0.00694423340461564!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00704291048036369!GO:0005765;lysosomal membrane;0.00712554203518496!GO:0051540;metal cluster binding;0.00720307262045359!GO:0051536;iron-sulfur cluster binding;0.00720307262045359!GO:0016197;endosome transport;0.00724014394194384!GO:0006144;purine base metabolic process;0.00728081140331718!GO:0000178;exosome (RNase complex);0.00728646218346904!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0073462309873247!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00745543135496433!GO:0000339;RNA cap binding;0.00763079637893233!GO:0005769;early endosome;0.00776980904314106!GO:0006519;amino acid and derivative metabolic process;0.00787670175818798!GO:0043414;biopolymer methylation;0.00789006513176013!GO:0016584;nucleosome positioning;0.00799268239580483!GO:0032200;telomere organization and biogenesis;0.00806777426717264!GO:0000723;telomere maintenance;0.00806777426717264!GO:0006270;DNA replication initiation;0.00806777426717264!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00806777426717264!GO:0015002;heme-copper terminal oxidase activity;0.00806777426717264!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00806777426717264!GO:0004129;cytochrome-c oxidase activity;0.00806777426717264!GO:0000096;sulfur amino acid metabolic process;0.00809973754114833!GO:0003725;double-stranded RNA binding;0.00810651450930246!GO:0006644;phospholipid metabolic process;0.00817130348546581!GO:0031903;microbody membrane;0.00847340084290979!GO:0005778;peroxisomal membrane;0.00847340084290979!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00862254865736064!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00862254865736064!GO:0009126;purine nucleoside monophosphate metabolic process;0.00862254865736064!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00862254865736064!GO:0009889;regulation of biosynthetic process;0.00869402061840427!GO:0016407;acetyltransferase activity;0.00872843208883707!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00872843208883707!GO:0015036;disulfide oxidoreductase activity;0.00872843208883707!GO:0000792;heterochromatin;0.00875487790510569!GO:0030119;AP-type membrane coat adaptor complex;0.00889837196405786!GO:0009081;branched chain family amino acid metabolic process;0.00911156215005422!GO:0004576;oligosaccharyl transferase activity;0.00911156215005422!GO:0046983;protein dimerization activity;0.00920843548580331!GO:0030176;integral to endoplasmic reticulum membrane;0.00925378516313993!GO:0006376;mRNA splice site selection;0.00953620855939195!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00953620855939195!GO:0007033;vacuole organization and biogenesis;0.00970391458785366!GO:0048471;perinuclear region of cytoplasm;0.00975969655163437!GO:0006516;glycoprotein catabolic process;0.00998123759850016!GO:0050790;regulation of catalytic activity;0.0100467966222964!GO:0033116;ER-Golgi intermediate compartment membrane;0.010201921085428!GO:0031570;DNA integrity checkpoint;0.0103169852903688!GO:0043488;regulation of mRNA stability;0.0103169852903688!GO:0043487;regulation of RNA stability;0.0103169852903688!GO:0006275;regulation of DNA replication;0.0103621254169656!GO:0042158;lipoprotein biosynthetic process;0.0107633653641727!GO:0032259;methylation;0.0108049026226784!GO:0051920;peroxiredoxin activity;0.0108175557419402!GO:0006779;porphyrin biosynthetic process;0.0108175557419402!GO:0033014;tetrapyrrole biosynthetic process;0.0108175557419402!GO:0051789;response to protein stimulus;0.0109410884079556!GO:0006986;response to unfolded protein;0.0109410884079556!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0109665225201829!GO:0004177;aminopeptidase activity;0.011098816228392!GO:0003887;DNA-directed DNA polymerase activity;0.0112580274238276!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0115810105939217!GO:0006378;mRNA polyadenylation;0.011621535128929!GO:0009615;response to virus;0.011621535128929!GO:0043022;ribosome binding;0.0117588281624634!GO:0030131;clathrin adaptor complex;0.011766749506851!GO:0015631;tubulin binding;0.0124037175123743!GO:0004003;ATP-dependent DNA helicase activity;0.0124037175123743!GO:0006611;protein export from nucleus;0.0125372332565657!GO:0044255;cellular lipid metabolic process;0.0126775086593516!GO:0035258;steroid hormone receptor binding;0.0127380400706302!GO:0005669;transcription factor TFIID complex;0.0127772491374503!GO:0000209;protein polyubiquitination;0.012827315678344!GO:0007050;cell cycle arrest;0.0128857574737487!GO:0044450;microtubule organizing center part;0.0134191293362858!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0134477748168386!GO:0005832;chaperonin-containing T-complex;0.0135489481961428!GO:0016272;prefoldin complex;0.0135808203017845!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0135808203017845!GO:0000228;nuclear chromosome;0.0135808203017845!GO:0004532;exoribonuclease activity;0.0135808203017845!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0135808203017845!GO:0015923;mannosidase activity;0.0144314088308903!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0144617397650095!GO:0030521;androgen receptor signaling pathway;0.0146936822743275!GO:0008408;3'-5' exonuclease activity;0.0153945920993554!GO:0030663;COPI coated vesicle membrane;0.0159193826786501!GO:0030126;COPI vesicle coat;0.0159193826786501!GO:0006730;one-carbon compound metabolic process;0.0162448548731757!GO:0040029;regulation of gene expression, epigenetic;0.016318216683284!GO:0000726;non-recombinational repair;0.0165063932066278!GO:0000725;recombinational repair;0.0167411097070131!GO:0000724;double-strand break repair via homologous recombination;0.0167411097070131!GO:0005876;spindle microtubule;0.0168319130058604!GO:0048487;beta-tubulin binding;0.016850365393285!GO:0009303;rRNA transcription;0.0168850386724106!GO:0031123;RNA 3'-end processing;0.0173867616579038!GO:0008139;nuclear localization sequence binding;0.0175466299792527!GO:0030518;steroid hormone receptor signaling pathway;0.0177821000988426!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0178428669876395!GO:0032940;secretion by cell;0.0180261353805847!GO:0008250;oligosaccharyl transferase complex;0.0183512594048548!GO:0046112;nucleobase biosynthetic process;0.018656868374511!GO:0051053;negative regulation of DNA metabolic process;0.0190084771996976!GO:0045947;negative regulation of translational initiation;0.019017616084938!GO:0031970;organelle envelope lumen;0.0194823581416867!GO:0008097;5S rRNA binding;0.01953439834808!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0195718227900411!GO:0006607;NLS-bearing substrate import into nucleus;0.019937071309685!GO:0043601;nuclear replisome;0.0199427317529993!GO:0030894;replisome;0.0199427317529993!GO:0005777;peroxisome;0.0199427317529993!GO:0042579;microbody;0.0199427317529993!GO:0019377;glycolipid catabolic process;0.0201528766296156!GO:0032561;guanyl ribonucleotide binding;0.0204605128393968!GO:0019001;guanyl nucleotide binding;0.0204605128393968!GO:0003924;GTPase activity;0.0205006408515434!GO:0031902;late endosome membrane;0.0205516432937227!GO:0006740;NADPH regeneration;0.0205679133934786!GO:0006098;pentose-phosphate shunt;0.0205679133934786!GO:0008022;protein C-terminus binding;0.0206555993154818!GO:0016860;intramolecular oxidoreductase activity;0.0208147435195962!GO:0009308;amine metabolic process;0.0210061810420904!GO:0008652;amino acid biosynthetic process;0.0210061810420904!GO:0009116;nucleoside metabolic process;0.0210847323370219!GO:0051287;NAD binding;0.0216334584728329!GO:0000781;chromosome, telomeric region;0.0224258499722381!GO:0007034;vacuolar transport;0.0224258499722381!GO:0005663;DNA replication factor C complex;0.0225461644392879!GO:0050662;coenzyme binding;0.022937319579376!GO:0018193;peptidyl-amino acid modification;0.0231505380835191!GO:0000819;sister chromatid segregation;0.0237376757664738!GO:0000077;DNA damage checkpoint;0.0238732752798283!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0238732752798283!GO:0045039;protein import into mitochondrial inner membrane;0.0238732752798283!GO:0043065;positive regulation of apoptosis;0.0239118539654084!GO:0022415;viral reproductive process;0.0242909120698536!GO:0008276;protein methyltransferase activity;0.0243221639087371!GO:0009266;response to temperature stimulus;0.0244952640037605!GO:0005791;rough endoplasmic reticulum;0.0244952640037605!GO:0003923;GPI-anchor transamidase activity;0.0246495934928235!GO:0016255;attachment of GPI anchor to protein;0.0246495934928235!GO:0042765;GPI-anchor transamidase complex;0.0246495934928235!GO:0009066;aspartate family amino acid metabolic process;0.0254958261414657!GO:0030137;COPI-coated vesicle;0.0259931714912224!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0269043935962437!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0269043935962437!GO:0010257;NADH dehydrogenase complex assembly;0.0269043935962437!GO:0033108;mitochondrial respiratory chain complex assembly;0.0269043935962437!GO:0006406;mRNA export from nucleus;0.0271115827361961!GO:0030658;transport vesicle membrane;0.0271115827361961!GO:0046479;glycosphingolipid catabolic process;0.0271839058519749!GO:0008234;cysteine-type peptidase activity;0.0273543793955729!GO:0035267;NuA4 histone acetyltransferase complex;0.0276847009540327!GO:0009083;branched chain family amino acid catabolic process;0.02796509125073!GO:0005652;nuclear lamina;0.02796509125073!GO:0000070;mitotic sister chromatid segregation;0.0279729730489288!GO:0005784;translocon complex;0.0283037567093468!GO:0030134;ER to Golgi transport vesicle;0.028702545198929!GO:0016605;PML body;0.0288774340983149!GO:0046519;sphingoid metabolic process;0.0295553834761812!GO:0031647;regulation of protein stability;0.0295553834761812!GO:0051452;cellular pH reduction;0.0297815771613711!GO:0051453;regulation of cellular pH;0.0297815771613711!GO:0045851;pH reduction;0.0297815771613711!GO:0051881;regulation of mitochondrial membrane potential;0.0297832965203568!GO:0043068;positive regulation of programmed cell death;0.0300085065989508!GO:0043189;H4/H2A histone acetyltransferase complex;0.0300653526141469!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.030276950632766!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0303045171622623!GO:0031252;leading edge;0.0304223658046326!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0305620343963318!GO:0016408;C-acyltransferase activity;0.0306294761587395!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0309737675186997!GO:0030433;ER-associated protein catabolic process;0.0311578557424134!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0311578557424134!GO:0006733;oxidoreduction coenzyme metabolic process;0.0311752395016803!GO:0042770;DNA damage response, signal transduction;0.031347674383071!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0317625728046334!GO:0000123;histone acetyltransferase complex;0.0318967319963581!GO:0018196;peptidyl-asparagine modification;0.031992430397076!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.031992430397076!GO:0006807;nitrogen compound metabolic process;0.0324715892893239!GO:0006778;porphyrin metabolic process;0.0327143751818749!GO:0033013;tetrapyrrole metabolic process;0.0327143751818749!GO:0019206;nucleoside kinase activity;0.033008869051409!GO:0050178;phenylpyruvate tautomerase activity;0.0334759306489681!GO:0006400;tRNA modification;0.0338236928073132!GO:0006635;fatty acid beta-oxidation;0.0343708166780025!GO:0005869;dynactin complex;0.0343767475207704!GO:0005096;GTPase activator activity;0.0345122536512322!GO:0030508;thiol-disulfide exchange intermediate activity;0.0356256513926384!GO:0022411;cellular component disassembly;0.0359531161510845!GO:0004448;isocitrate dehydrogenase activity;0.037651141865432!GO:0007021;tubulin folding;0.038080561835559!GO:0003746;translation elongation factor activity;0.0383840887639645!GO:0046426;negative regulation of JAK-STAT cascade;0.0387024523151369!GO:0006013;mannose metabolic process;0.0387118084599212!GO:0000303;response to superoxide;0.0388555276226906!GO:0009067;aspartate family amino acid biosynthetic process;0.0388904710861231!GO:0031371;ubiquitin conjugating enzyme complex;0.0389437863051971!GO:0006633;fatty acid biosynthetic process;0.0390459468831871!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0403146635915527!GO:0000097;sulfur amino acid biosynthetic process;0.0403565318078753!GO:0032039;integrator complex;0.0404252526410659!GO:0045815;positive regulation of gene expression, epigenetic;0.0404252526410659!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0404362230842656!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0404362230842656!GO:0007259;JAK-STAT cascade;0.0406409084272244!GO:0030911;TPR domain binding;0.0407396324134356!GO:0000790;nuclear chromatin;0.0408831856704144!GO:0008637;apoptotic mitochondrial changes;0.0414091052570324!GO:0006783;heme biosynthetic process;0.0419324993646192!GO:0030127;COPII vesicle coat;0.0423415431874198!GO:0012507;ER to Golgi transport vesicle membrane;0.0423415431874198!GO:0004096;catalase activity;0.0426734395285894!GO:0008538;proteasome activator activity;0.0429174438026305!GO:0032984;macromolecular complex disassembly;0.043069019983901!GO:0003756;protein disulfide isomerase activity;0.043346793918858!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.043346793918858!GO:0019318;hexose metabolic process;0.0440404248278401!GO:0005975;carbohydrate metabolic process;0.0446286297159223!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0446820673400366!GO:0004300;enoyl-CoA hydratase activity;0.045403619673288!GO:0004540;ribonuclease activity;0.0456371909764267!GO:0006767;water-soluble vitamin metabolic process;0.0459280740581902!GO:0000305;response to oxygen radical;0.0460730719385003!GO:0005996;monosaccharide metabolic process;0.0460934915852913!GO:0030522;intracellular receptor-mediated signaling pathway;0.0465385621306065!GO:0006596;polyamine biosynthetic process;0.0470098846479229!GO:0000152;nuclear ubiquitin ligase complex;0.0484344034683895!GO:0000910;cytokinesis;0.0491188967397912!GO:0030041;actin filament polymerization;0.049758189284443 | |||
|sample_id=10792 | |sample_id=10792 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=MYB:2.01542572499;ALX1:1.92837605817;YY1:1.40520928024;NANOG{mouse}:1.3488228133;STAT1,3:1.31513674822;ZBTB16:1.2881787963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2538707192;E2F1..5:1.24998385864;ELF1,2,4:1.0959170023;GATA6:1.08034426275;SPIB:1.03726252676;IKZF2:0.999158802799;POU3F1..4:0.989558835258;ARID5B:0.980670982875;HOXA9_MEIS1:0.949901632682;DBP:0.923631830205;BREu{core}:0.91901570171;TEF:0.907171630302;CDX1,2,4:0.805390140793;PAX4:0.796327530245;NKX6-1,2:0.773753767242;SPI1:0.757477308665;PITX1..3:0.756802870849;FOXP3:0.746652715623;FOXA2:0.734474616114;DMAP1_NCOR{1,2}_SMARC:0.720886597396;ELK1,4_GABP{A,B1}:0.711935108209;ZNF143:0.617234767017;ETS1,2:0.616645316809;AIRE:0.612566312004;NKX2-2,8:0.605769791445;ZNF384:0.590253397316;TLX2:0.585341107915;NFY{A,B,C}:0.584514554951;NKX2-3_NKX2-5:0.577883439836;RUNX1..3:0.568931413175;RBPJ:0.544755962627;FOX{I1,J2}:0.521677444883;CUX2:0.507430517488;RXRA_VDR{dimer}:0.453632031643;SREBF1,2:0.425807120419;MYOD1:0.424498802243;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.415931775298;NRF1:0.398438592283;RFX2..5_RFXANK_RFXAP:0.389992492193;FOXP1:0.364954089975;bHLH_family:0.315915384311;NKX3-1:0.308595150572;HBP1_HMGB_SSRP1_UBTF:0.297236600526;NANOG:0.248241704143;EVI1:0.221026046246;ONECUT1,2:0.21982904271;ESRRA:0.218526696405;AHR_ARNT_ARNT2:0.20491943666;TOPORS:0.190322058537;RXR{A,B,G}:0.18729429944;GZF1:0.167840915421;IRF1,2:0.152611948458;FOXQ1:0.141478870356;FOXN1:0.137313416085;FOXM1:0.137309291898;PAX8:0.129943459861;IRF7:0.0967290201143;PBX1:0.0705352902237;PRRX1,2:0.0670352194065;AR:0.057061370295;HAND1,2:0.0475462381696;STAT5{A,B}:0.0133042204378;ZNF238:0.0124369062864;NR6A1:0.00523897082896;GCM1,2:-0.000660968952848;HOX{A6,A7,B6,B7}:-0.00195100132819;TGIF1:-0.0566988476867;EN1,2:-0.0606606972253;MYBL2:-0.0867721528755;SNAI1..3:-0.0874351375351;NKX2-1,4:-0.0964411996474;KLF4:-0.115123891403;VSX1,2:-0.121940749051;ZEB1:-0.128897237605;CRX:-0.132542123043;NR5A1,2:-0.166010200734;OCT4_SOX2{dimer}:-0.166753800657;PAX2:-0.168862458593;PAX6:-0.181542928384;POU6F1:-0.184274969074;PAX3,7:-0.193563144603;ATF5_CREB3:-0.205986777822;NFKB1_REL_RELA:-0.23822332698;MYFfamily:-0.24776429597;POU2F1..3:-0.257270851157;RFX1:-0.269065792642;RORA:-0.27461872897;PPARG:-0.276868432551;XBP1:-0.280467002559;CEBPA,B_DDIT3:-0.281829872333;UFEwm:-0.285438834008;HNF4A_NR2F1,2:-0.289375788621;HOX{A4,D4}:-0.294753668218;NFE2:-0.304813896577;HNF1A:-0.319464477681;SOX{8,9,10}:-0.341100534424;BPTF:-0.342716348097;ESR1:-0.359047406772;REST:-0.377598271552;CREB1:-0.379812969831;PRDM1:-0.401031247361;SOX17:-0.402369767682;GFI1:-0.403287030863;POU5F1:-0.409977978727;EP300:-0.41504247687;ATF4:-0.427296834119;GATA4:-0.42809468599;NKX3-2:-0.428405380679;HMGA1,2:-0.432742744503;HES1:-0.459977517751;NFIX:-0.486826736172;FOXO1,3,4:-0.492078190074;RREB1:-0.4979625181;LMO2:-0.523318635122;SMAD1..7,9:-0.541357737894;FOSL2:-0.543599367559;HIF1A:-0.545115042867;NFE2L1:-0.545652266904;NFE2L2:-0.56391789775;TFDP1:-0.576527041309;POU1F1:-0.579703141367;HLF:-0.582845569398;PAX5:-0.595001702858;ZBTB6:-0.600051564387;PDX1:-0.614928022082;TFAP4:-0.616415687741;FOXD3:-0.618207880766;ZNF148:-0.629797646072;STAT2,4,6:-0.667094360655;FOS_FOS{B,L1}_JUN{B,D}:-0.669684405853;BACH2:-0.67463617301;CDC5L:-0.676679740961;MEF2{A,B,C,D}:-0.702249100664;NFIL3:-0.704677970559;FOX{F1,F2,J1}:-0.760982241205;NHLH1,2:-0.76217285627;TAL1_TCF{3,4,12}:-0.769922948607;SOX2:-0.770911054888;HOX{A5,B5}:-0.775852463306;LEF1_TCF7_TCF7L1,2:-0.830235176056;MZF1:-0.83468618675;SOX5:-0.850681972602;PAX1,9:-0.878451266025;LHX3,4:-0.89057039884;ZIC1..3:-0.897962085132;NR1H4:-0.958301160112;SRF:-0.986749229347;IKZF1:-1.00872255743;GTF2I:-1.0095936735;FOX{D1,D2}:-1.01405143857;SPZ1:-1.02879186699;ZFP161:-1.03868232775;HIC1:-1.05456050502;ADNP_IRX_SIX_ZHX:-1.06732271502;GTF2A1,2:-1.08818946901;T:-1.1327680417;TFAP2{A,C}:-1.15233775209;NFATC1..3:-1.15417486469;MED-1{core}:-1.17384835315;ATF2:-1.18926702981;GLI1..3:-1.21144600861;ATF6:-1.21669655887;TLX1..3_NFIC{dimer}:-1.2293072725;ZNF423:-1.26296195454;MAZ:-1.28599593724;HSF1,2:-1.29367180388;MTE{core}:-1.3214470484;TBP:-1.32464669391;MAFB:-1.33896574822;TEAD1:-1.35018038321;NR3C1:-1.35935357705;FOXL1:-1.36569982234;ALX4:-1.39367746651;TP53:-1.41638021263;MTF1:-1.42515238783;GFI1B:-1.43589266056;TFAP2B:-1.44262617148;EBF1:-1.45484259504;HMX1:-1.45883172813;PATZ1:-1.52638529709;XCPE1{core}:-1.67612868699;EGR1..3:-1.69969940029;TBX4,5:-1.73023890441;SP1:-1.88430138021;JUN:-1.9331272194;TFCP2:-2.19197927525 | |top_motifs=MYB:2.01542572499;ALX1:1.92837605817;YY1:1.40520928024;NANOG{mouse}:1.3488228133;STAT1,3:1.31513674822;ZBTB16:1.2881787963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2538707192;E2F1..5:1.24998385864;ELF1,2,4:1.0959170023;GATA6:1.08034426275;SPIB:1.03726252676;IKZF2:0.999158802799;POU3F1..4:0.989558835258;ARID5B:0.980670982875;HOXA9_MEIS1:0.949901632682;DBP:0.923631830205;BREu{core}:0.91901570171;TEF:0.907171630302;CDX1,2,4:0.805390140793;PAX4:0.796327530245;NKX6-1,2:0.773753767242;SPI1:0.757477308665;PITX1..3:0.756802870849;FOXP3:0.746652715623;FOXA2:0.734474616114;DMAP1_NCOR{1,2}_SMARC:0.720886597396;ELK1,4_GABP{A,B1}:0.711935108209;ZNF143:0.617234767017;ETS1,2:0.616645316809;AIRE:0.612566312004;NKX2-2,8:0.605769791445;ZNF384:0.590253397316;TLX2:0.585341107915;NFY{A,B,C}:0.584514554951;NKX2-3_NKX2-5:0.577883439836;RUNX1..3:0.568931413175;RBPJ:0.544755962627;FOX{I1,J2}:0.521677444883;CUX2:0.507430517488;RXRA_VDR{dimer}:0.453632031643;SREBF1,2:0.425807120419;MYOD1:0.424498802243;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.415931775298;NRF1:0.398438592283;RFX2..5_RFXANK_RFXAP:0.389992492193;FOXP1:0.364954089975;bHLH_family:0.315915384311;NKX3-1:0.308595150572;HBP1_HMGB_SSRP1_UBTF:0.297236600526;NANOG:0.248241704143;EVI1:0.221026046246;ONECUT1,2:0.21982904271;ESRRA:0.218526696405;AHR_ARNT_ARNT2:0.20491943666;TOPORS:0.190322058537;RXR{A,B,G}:0.18729429944;GZF1:0.167840915421;IRF1,2:0.152611948458;FOXQ1:0.141478870356;FOXN1:0.137313416085;FOXM1:0.137309291898;PAX8:0.129943459861;IRF7:0.0967290201143;PBX1:0.0705352902237;PRRX1,2:0.0670352194065;AR:0.057061370295;HAND1,2:0.0475462381696;STAT5{A,B}:0.0133042204378;ZNF238:0.0124369062864;NR6A1:0.00523897082896;GCM1,2:-0.000660968952848;HOX{A6,A7,B6,B7}:-0.00195100132819;TGIF1:-0.0566988476867;EN1,2:-0.0606606972253;MYBL2:-0.0867721528755;SNAI1..3:-0.0874351375351;NKX2-1,4:-0.0964411996474;KLF4:-0.115123891403;VSX1,2:-0.121940749051;ZEB1:-0.128897237605;CRX:-0.132542123043;NR5A1,2:-0.166010200734;OCT4_SOX2{dimer}:-0.166753800657;PAX2:-0.168862458593;PAX6:-0.181542928384;POU6F1:-0.184274969074;PAX3,7:-0.193563144603;ATF5_CREB3:-0.205986777822;NFKB1_REL_RELA:-0.23822332698;MYFfamily:-0.24776429597;POU2F1..3:-0.257270851157;RFX1:-0.269065792642;RORA:-0.27461872897;PPARG:-0.276868432551;XBP1:-0.280467002559;CEBPA,B_DDIT3:-0.281829872333;UFEwm:-0.285438834008;HNF4A_NR2F1,2:-0.289375788621;HOX{A4,D4}:-0.294753668218;NFE2:-0.304813896577;HNF1A:-0.319464477681;SOX{8,9,10}:-0.341100534424;BPTF:-0.342716348097;ESR1:-0.359047406772;REST:-0.377598271552;CREB1:-0.379812969831;PRDM1:-0.401031247361;SOX17:-0.402369767682;GFI1:-0.403287030863;POU5F1:-0.409977978727;EP300:-0.41504247687;ATF4:-0.427296834119;GATA4:-0.42809468599;NKX3-2:-0.428405380679;HMGA1,2:-0.432742744503;HES1:-0.459977517751;NFIX:-0.486826736172;FOXO1,3,4:-0.492078190074;RREB1:-0.4979625181;LMO2:-0.523318635122;SMAD1..7,9:-0.541357737894;FOSL2:-0.543599367559;HIF1A:-0.545115042867;NFE2L1:-0.545652266904;NFE2L2:-0.56391789775;TFDP1:-0.576527041309;POU1F1:-0.579703141367;HLF:-0.582845569398;PAX5:-0.595001702858;ZBTB6:-0.600051564387;PDX1:-0.614928022082;TFAP4:-0.616415687741;FOXD3:-0.618207880766;ZNF148:-0.629797646072;STAT2,4,6:-0.667094360655;FOS_FOS{B,L1}_JUN{B,D}:-0.669684405853;BACH2:-0.67463617301;CDC5L:-0.676679740961;MEF2{A,B,C,D}:-0.702249100664;NFIL3:-0.704677970559;FOX{F1,F2,J1}:-0.760982241205;NHLH1,2:-0.76217285627;TAL1_TCF{3,4,12}:-0.769922948607;SOX2:-0.770911054888;HOX{A5,B5}:-0.775852463306;LEF1_TCF7_TCF7L1,2:-0.830235176056;MZF1:-0.83468618675;SOX5:-0.850681972602;PAX1,9:-0.878451266025;LHX3,4:-0.89057039884;ZIC1..3:-0.897962085132;NR1H4:-0.958301160112;SRF:-0.986749229347;IKZF1:-1.00872255743;GTF2I:-1.0095936735;FOX{D1,D2}:-1.01405143857;SPZ1:-1.02879186699;ZFP161:-1.03868232775;HIC1:-1.05456050502;ADNP_IRX_SIX_ZHX:-1.06732271502;GTF2A1,2:-1.08818946901;T:-1.1327680417;TFAP2{A,C}:-1.15233775209;NFATC1..3:-1.15417486469;MED-1{core}:-1.17384835315;ATF2:-1.18926702981;GLI1..3:-1.21144600861;ATF6:-1.21669655887;TLX1..3_NFIC{dimer}:-1.2293072725;ZNF423:-1.26296195454;MAZ:-1.28599593724;HSF1,2:-1.29367180388;MTE{core}:-1.3214470484;TBP:-1.32464669391;MAFB:-1.33896574822;TEAD1:-1.35018038321;NR3C1:-1.35935357705;FOXL1:-1.36569982234;ALX4:-1.39367746651;TP53:-1.41638021263;MTF1:-1.42515238783;GFI1B:-1.43589266056;TFAP2B:-1.44262617148;EBF1:-1.45484259504;HMX1:-1.45883172813;PATZ1:-1.52638529709;XCPE1{core}:-1.67612868699;EGR1..3:-1.69969940029;TBX4,5:-1.73023890441;SP1:-1.88430138021;JUN:-1.9331272194;TFCP2:-2.19197927525 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10792-110H9;search_select_hide=table117:FF:10792-110H9 | |||
}} | }} | ||
Latest revision as of 15:05, 3 June 2020
| Name: | acute myeloid leukemia (FAB M2) cell line:Kasumi-6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13052 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13052
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13052
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0362 |
| 10 | 10 | 0.00982 |
| 100 | 100 | 0.32 |
| 101 | 101 | 0.088 |
| 102 | 102 | 0.882 |
| 103 | 103 | 0.0678 |
| 104 | 104 | 0.663 |
| 105 | 105 | 0.559 |
| 106 | 106 | 0.871 |
| 107 | 107 | 0.405 |
| 108 | 108 | 0.439 |
| 109 | 109 | 0.0526 |
| 11 | 11 | 0.069 |
| 110 | 110 | 0.182 |
| 111 | 111 | 0.0226 |
| 112 | 112 | 0.21 |
| 113 | 113 | 0.688 |
| 114 | 114 | 0.0566 |
| 115 | 115 | 0.65 |
| 116 | 116 | 0.277 |
| 117 | 117 | 0.0103 |
| 118 | 118 | 0.0429 |
| 119 | 119 | 0.996 |
| 12 | 12 | 0.954 |
| 120 | 120 | 0.402 |
| 121 | 121 | 0.554 |
| 122 | 122 | 0.507 |
| 123 | 123 | 0.0619 |
| 124 | 124 | 0.045 |
| 125 | 125 | 0.0437 |
| 126 | 126 | 0.286 |
| 127 | 127 | 0.325 |
| 128 | 128 | 0.711 |
| 129 | 129 | 0.802 |
| 13 | 13 | 0.013 |
| 130 | 130 | 0.897 |
| 131 | 131 | 0.268 |
| 132 | 132 | 0.565 |
| 133 | 133 | 0.466 |
| 134 | 134 | 0.238 |
| 135 | 135 | 0.279 |
| 136 | 136 | 0.351 |
| 137 | 137 | 0.185 |
| 138 | 138 | 0.542 |
| 139 | 139 | 0.122 |
| 14 | 14 | 0.868 |
| 140 | 140 | 0.456 |
| 141 | 141 | 0.272 |
| 142 | 142 | 0.106 |
| 143 | 143 | 0.99 |
| 144 | 144 | 0.529 |
| 145 | 145 | 0.64 |
| 146 | 146 | 0.845 |
| 147 | 147 | 0.0511 |
| 148 | 148 | 0.159 |
| 149 | 149 | 0.237 |
| 15 | 15 | 0.131 |
| 150 | 150 | 0.795 |
| 151 | 151 | 0.746 |
| 152 | 152 | 0.279 |
| 153 | 153 | 0.859 |
| 154 | 154 | 0.916 |
| 155 | 155 | 0.00823 |
| 156 | 156 | 0.729 |
| 157 | 157 | 0.35 |
| 158 | 158 | 0.376 |
| 159 | 159 | 0.615 |
| 16 | 16 | 0.739 |
| 160 | 160 | 0.229 |
| 161 | 161 | 0.0178 |
| 162 | 162 | 0.726 |
| 163 | 163 | 0.856 |
| 164 | 164 | 0.094 |
| 165 | 165 | 0.663 |
| 166 | 166 | 0.959 |
| 167 | 167 | 0.0415 |
| 168 | 168 | 0.279 |
| 169 | 169 | 0.5 |
| 17 | 17 | 0.873 |
| 18 | 18 | 0.758 |
| 19 | 19 | 0.573 |
| 2 | 2 | 0.574 |
| 20 | 20 | 0.566 |
| 21 | 21 | 0.257 |
| 22 | 22 | 0.837 |
| 23 | 23 | 0.0798 |
| 24 | 24 | 0.199 |
| 25 | 25 | 0.162 |
| 26 | 26 | 0.0247 |
| 27 | 27 | 0.389 |
| 28 | 28 | 0.71 |
| 29 | 29 | 0.0311 |
| 3 | 3 | 0.0108 |
| 30 | 30 | 0.147 |
| 31 | 31 | 0.637 |
| 32 | 32 | 0.311 |
| 33 | 33 | 0.268 |
| 34 | 34 | 0.727 |
| 35 | 35 | 0.0903 |
| 36 | 36 | 0.0432 |
| 37 | 37 | 0.142 |
| 38 | 38 | 0.564 |
| 39 | 39 | 0.449 |
| 4 | 4 | 0.185 |
| 40 | 40 | 0.199 |
| 41 | 41 | 0.765 |
| 42 | 42 | 0.161 |
| 43 | 43 | 0.541 |
| 44 | 44 | 0.353 |
| 45 | 45 | 0.5 |
| 46 | 46 | 0.0677 |
| 47 | 47 | 0.0343 |
| 48 | 48 | 0.0796 |
| 49 | 49 | 0.224 |
| 5 | 5 | 0.976 |
| 50 | 50 | 0.81 |
| 51 | 51 | 0.748 |
| 52 | 52 | 0.277 |
| 53 | 53 | 0.404 |
| 54 | 54 | 0.668 |
| 55 | 55 | 0.719 |
| 56 | 56 | 0.9 |
| 57 | 57 | 0.154 |
| 58 | 58 | 0.146 |
| 59 | 59 | 0.748 |
| 6 | 6 | 0.359 |
| 60 | 60 | 0.889 |
| 61 | 61 | 0.0591 |
| 62 | 62 | 0.147 |
| 63 | 63 | 0.446 |
| 64 | 64 | 0.189 |
| 65 | 65 | 0.715 |
| 66 | 66 | 0.134 |
| 67 | 67 | 0.696 |
| 68 | 68 | 0.683 |
| 69 | 69 | 0.941 |
| 7 | 7 | 0.067 |
| 70 | 70 | 0.99 |
| 71 | 71 | 0.00648 |
| 72 | 72 | 0.731 |
| 73 | 73 | 0.501 |
| 74 | 74 | 0.251 |
| 75 | 75 | 0.00638 |
| 76 | 76 | 0.0887 |
| 77 | 77 | 0.881 |
| 78 | 78 | 0.0269 |
| 79 | 79 | 0.851 |
| 8 | 8 | 0.121 |
| 80 | 80 | 0.112 |
| 81 | 81 | 0.371 |
| 82 | 82 | 0.403 |
| 83 | 83 | 0.29 |
| 84 | 84 | 0.521 |
| 85 | 85 | 0.801 |
| 86 | 86 | 0.709 |
| 87 | 87 | 0.601 |
| 88 | 88 | 0.622 |
| 89 | 89 | 0.662 |
| 9 | 9 | 0.82 |
| 90 | 90 | 0.0376 |
| 91 | 91 | 0.371 |
| 92 | 92 | 0.995 |
| 93 | 93 | 0.673 |
| 94 | 94 | 0.522 |
| 95 | 95 | 0.0212 |
| 96 | 96 | 0.813 |
| 97 | 97 | 0.404 |
| 98 | 98 | 0.201 |
| 99 | 99 | 0.492 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13052
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
