FF:10800-110I8: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	small cell cervical cancer cell line:HCSC-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11885
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	48
cell type	unclassifiable
cell line	HCSC-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005366

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11885		CAGE		DRX008004		DRR008876

Accession ID Hg19

Library id		BAM		CTSS
CNhs11885		DRZ000301		DRZ001686

Accession ID Hg38

Library id		BAM		CTSS
CNhs11885		DRZ011651		DRZ013036

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0818
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.579
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0329
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0528
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0192
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.648
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.167
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0913
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0913
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.624
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	1.1
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11885

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.68161e-5
MA0003.1	MA0003.1	0.152
MA0004.1	MA0004.1	0.47
MA0006.1	MA0006.1	0.653
MA0007.1	MA0007.1	0.433
MA0009.1	MA0009.1	0.583
MA0014.1	MA0014.1	0.636
MA0017.1	MA0017.1	0.0116
MA0018.2	MA0018.2	0.00114
MA0019.1	MA0019.1	0.861
MA0024.1	MA0024.1	1.97879e-5
MA0025.1	MA0025.1	0.101
MA0027.1	MA0027.1	0.474
MA0028.1	MA0028.1	0.132
MA0029.1	MA0029.1	0.442
MA0030.1	MA0030.1	0.69
MA0031.1	MA0031.1	0.817
MA0035.2	MA0035.2	0.718
MA0038.1	MA0038.1	7.72198e-5
MA0039.2	MA0039.2	0.493
MA0040.1	MA0040.1	0.884
MA0041.1	MA0041.1	0.584
MA0042.1	MA0042.1	0.821
MA0043.1	MA0043.1	0.00167
MA0046.1	MA0046.1	0.615
MA0047.2	MA0047.2	0.719
MA0048.1	MA0048.1	0.607
MA0050.1	MA0050.1	7.92616e-5
MA0051.1	MA0051.1	0.00209
MA0052.1	MA0052.1	0.564
MA0055.1	MA0055.1	0.722
MA0057.1	MA0057.1	0.395
MA0058.1	MA0058.1	0.504
MA0059.1	MA0059.1	0.829
MA0060.1	MA0060.1	3.34785e-19
MA0061.1	MA0061.1	0.0152
MA0062.2	MA0062.2	0.0566
MA0065.2	MA0065.2	0.0157
MA0066.1	MA0066.1	0.0576
MA0067.1	MA0067.1	0.711
MA0068.1	MA0068.1	0.198
MA0069.1	MA0069.1	0.469
MA0070.1	MA0070.1	0.075
MA0071.1	MA0071.1	0.379
MA0072.1	MA0072.1	0.823
MA0073.1	MA0073.1	0.619
MA0074.1	MA0074.1	0.249
MA0076.1	MA0076.1	0.0218
MA0077.1	MA0077.1	0.0014
MA0078.1	MA0078.1	0.329
MA0079.2	MA0079.2	0.292
MA0080.2	MA0080.2	4.42155e-9
MA0081.1	MA0081.1	0.0748
MA0083.1	MA0083.1	0.15
MA0084.1	MA0084.1	0.401
MA0087.1	MA0087.1	0.843
MA0088.1	MA0088.1	0.681
MA0090.1	MA0090.1	7.34431e-4
MA0091.1	MA0091.1	0.0446
MA0092.1	MA0092.1	0.144
MA0093.1	MA0093.1	0.392
MA0099.2	MA0099.2	6.16145e-12
MA0100.1	MA0100.1	0.219
MA0101.1	MA0101.1	0.137
MA0102.2	MA0102.2	0.534
MA0103.1	MA0103.1	0.0454
MA0104.2	MA0104.2	0.475
MA0105.1	MA0105.1	3.38587e-4
MA0106.1	MA0106.1	0.304
MA0107.1	MA0107.1	0.0717
MA0108.2	MA0108.2	0.0347
MA0111.1	MA0111.1	0.587
MA0112.2	MA0112.2	1.79658e-5
MA0113.1	MA0113.1	0.0105
MA0114.1	MA0114.1	0.0826
MA0115.1	MA0115.1	0.993
MA0116.1	MA0116.1	0.00141
MA0117.1	MA0117.1	0.787
MA0119.1	MA0119.1	0.00927
MA0122.1	MA0122.1	0.417
MA0124.1	MA0124.1	0.998
MA0125.1	MA0125.1	0.0495
MA0131.1	MA0131.1	0.297
MA0135.1	MA0135.1	0.172
MA0136.1	MA0136.1	1.34336e-5
MA0137.2	MA0137.2	0.0274
MA0138.2	MA0138.2	0.861
MA0139.1	MA0139.1	0.3
MA0140.1	MA0140.1	0.618
MA0141.1	MA0141.1	0.126
MA0142.1	MA0142.1	0.326
MA0143.1	MA0143.1	0.888
MA0144.1	MA0144.1	0.0379
MA0145.1	MA0145.1	0.137
MA0146.1	MA0146.1	0.0725
MA0147.1	MA0147.1	0.685
MA0148.1	MA0148.1	0.705
MA0149.1	MA0149.1	0.139
MA0150.1	MA0150.1	0.00179
MA0152.1	MA0152.1	0.916
MA0153.1	MA0153.1	0.371
MA0154.1	MA0154.1	0.00443
MA0155.1	MA0155.1	0.221
MA0156.1	MA0156.1	0.0976
MA0157.1	MA0157.1	0.365
MA0159.1	MA0159.1	0.0607
MA0160.1	MA0160.1	0.147
MA0162.1	MA0162.1	0.203
MA0163.1	MA0163.1	6.36912e-6
MA0164.1	MA0164.1	0.52
MA0258.1	MA0258.1	0.00657
MA0259.1	MA0259.1	0.563

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11885

Novel motif	Logo	P-value
1	1	0.166
10	10	0.194
100	100	0.989
101	101	0.288
102	102	0.504
103	103	0.0632
104	104	0.583
105	105	0.615
106	106	0.0168
107	107	0.131
108	108	0.909
109	109	0.223
11	11	0.13
110	110	0.229
111	111	0.274
112	112	0.0495
113	113	0.299
114	114	0.0139
115	115	0.624
116	116	0.591
117	117	0.152
118	118	0.454
119	119	0.19
12	12	0.963
120	120	0.637
121	121	0.876
122	122	0.52
123	123	0.511
124	124	0.367
125	125	0.627
126	126	0.525
127	127	0.148
128	128	0.136
129	129	0.563
13	13	0.101
130	130	0.812
131	131	0.387
132	132	0.623
133	133	0.0249
134	134	0.751
135	135	0.00171
136	136	0.197
137	137	0.28
138	138	0.171
139	139	0.0558
14	14	0.617
140	140	0.187
141	141	0.76
142	142	0.631
143	143	0.0128
144	144	0.516
145	145	0.175
146	146	0.669
147	147	0.692
148	148	0.118
149	149	0.0183
15	15	0.188
150	150	0.576
151	151	0.289
152	152	0.116
153	153	0.245
154	154	0.684
155	155	0.628
156	156	0.767
157	157	0.674
158	158	0.561
159	159	0.617
16	16	0.253
160	160	0.12
161	161	0.199
162	162	0.97
163	163	0.663
164	164	0.343
165	165	0.462
166	166	0.168
167	167	0.86
168	168	0.0792
169	169	0.00453
17	17	0.158
18	18	0.101
19	19	0.0843
2	2	0.5
20	20	0.592
21	21	0.186
22	22	0.0999
23	23	0.00964
24	24	0.122
25	25	0.77
26	26	0.208
27	27	0.276
28	28	0.807
29	29	0.342
3	3	0.0518
30	30	0.646
31	31	0.635
32	32	0.0217
33	33	0.549
34	34	0.264
35	35	0.173
36	36	0.134
37	37	0.113
38	38	0.193
39	39	0.226
4	4	0.887
40	40	0.416
41	41	0.519
42	42	0.184
43	43	0.0997
44	44	0.354
45	45	0.444
46	46	0.172
47	47	0.373
48	48	0.287
49	49	0.171
5	5	0.13
50	50	0.388
51	51	0.141
52	52	0.226
53	53	0.375
54	54	0.215
55	55	0.0476
56	56	0.507
57	57	0.292
58	58	0.243
59	59	0.0328
6	6	0.445
60	60	0.0233
61	61	0.382
62	62	0.0772
63	63	0.0717
64	64	0.602
65	65	0.0429
66	66	0.163
67	67	0.862
68	68	0.571
69	69	0.743
7	7	0.296
70	70	0.00444
71	71	0.104
72	72	0.189
73	73	0.152
74	74	0.133
75	75	0.15
76	76	0.709
77	77	0.126
78	78	0.358
79	79	0.117
8	8	0.155
80	80	0.0428
81	81	0.178
82	82	0.00936
83	83	0.254
84	84	0.835
85	85	0.00344
86	86	0.305
87	87	0.518
88	88	0.702
89	89	0.132
9	9	0.15
90	90	0.0373
91	91	0.18
92	92	0.0886
93	93	0.0928
94	94	0.175
95	95	0.457
96	96	0.0766
97	97	0.742
98	98	0.4
99	99	0.493

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11885

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005366
+|accession_numbers=CAGE;DRX008004;DRR008876;DRZ000301;DRZ001686;DRZ011651;DRZ013036
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.76!572.92!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.56!360.27!INSM1;;chr1:40367668..40367684,-!p2@MYCL1!2.42!262.71!MYCL1;;chr3:181429704..181429722,+!p1@SOX2!2.42!260.14!SOX2;;chr3:181429741..181429767,+!p2@SOX2!2.20!158.38!SOX2;;chr10:71333172..71333186,-!p1@NEUROG3!2.09!122.35!NEUROG3;;chr2:239148671..239148686,-!p1@HES6!2.06!397.70!HES6;;chr8:53166899..53166914,-!p3@ST18!1.91!80.48!ST18;;chr7:96654133..96654150,-!p1@DLX5!1.87!72.76!DLX5;;chr2:172967621..172967637,-!p1@DLX2!1.86!184.11!DLX2;;chr1:214161272..214161322,+!p1@PROX1!1.84!94.28!PROX1;;chr2:45236540..45236577,-!p1@SIX2!1.84!67.84!SIX2;;chr15:57511609..57511651,+!p2@TCF12!1.80!102.47!TCF12;;chr8:40755333..40755352,-!p1@ZMAT4!1.79!61.06!ZMAT4;;chr19:38720294..38720348,-!p1@DPF1!1.75!67.84!DPF1;;chr17:46622205..46622218,-!p3@HOXB2!1.69!55.21!HOXB2;;chr20:22564895..22564910,-!p1@FOXA2!1.69!47.96!FOXA2;;chr1:40367530..40367597,-!p1@MYCL1!1.66!78.84!MYCL1;;chr2:172950227..172950249,+!p2@DLX1!1.66!44.45!DLX1;;chr20:22565185..22565223,-!p3@FOXA2!1.62!40.71!FOXA2;;chr17:46675558..46675577,-!p2@HOXB6!1.62!40.24!HOXB6;;chr12:106976774..106976788,+!p1@RFX4!1.62!40.24!RFX4;;chr9:96717629..96717644,-!p1@BARX1!1.54!33.92!BARX1;;chr2:176972000..176972025,+!p4@HOXD11!1.54!33.69!HOXD11;;chr20:21378152..21378169,-!p1@NKX2-4!1.52!32.05!NKX2-4;;chr2:172949484..172949522,+!p1@DLX1!1.51!31.58!DLX1;;chr1:201979743..201979762,+!p1@ELF3!1.51!31.35!ELF3;;chr20:22565370..22565388,-!p2@FOXA2!1.51!31.11!FOXA2;;chr17:46671108..46671147,-!p1@HOXB5!1.48!29.24!HOXB5;;chr2:176969228..176969260,+!p1@HOXD11!1.46!27.84!HOXD11;;chr14:38064429..38064486,-!p1@FOXA1!1.45!26.90!FOXA1;;chr5:50679228..50679288,+!p1@ISL1!1.44!26.67!ISL1;;chr1:40367692..40367703,-!p3@MYCL1!1.42!25.27!MYCL1;;chr17:46622440..46622477,-!p5@HOXB2!1.39!26.44!HOXB2;;chr13:79177674..79177701,-!p1@POU4F1!1.38!23.16!POU4F1;;chr1:3569072..3569093,+!p1@TP73!1.35!21.52!TP73;;chr17:46667594..46667619,-!p1@HOXB3!1.33!20.59!HOXB3;;chr1:201979703..201979721,+!p2@ELF3!1.32!20.12!ELF3;;chr8:53162037..53162058,-!p5@ST18!1.32!19.88!ST18;;chr6:19837592..19837621,+!p1@ID4!1.30!113.46!ID4;;chr13:95364784..95364806,-!p1@SOX21!1.28!18.25!SOX21;;chr2:176994408..176994492,+!p1@HOXD8!1.24!16.38!HOXD8;;chr17:46675539..46675551,-!p7@HOXB6!1.23!16.14!HOXB6;;chr10:23481233..23481249,+!p1@PTF1A!1.23!16.14!PTF1A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.22!15.67!TFCP2L1;;chr1:116383738..116383752,-!p1@NHLH2!1.22!15.44!NHLH2;;chr13:79177703..79177729,-!p2@POU4F1!1.21!15.21!POU4F1;;chr7:96634878..96634900,+!p2@DLX6!1.21!15.21!DLX6;;chr2:172967242..172967265,-!p2@DLX2!1.20!14.97!DLX2;;chr12:106976678..106976708,+!p2@RFX4!1.19!14.50!RFX4;;chr7:27205136..27205164,-!p1@HOXA9!1.19!14.50!HOXA9;;chr1:209979467..209979494,-!p1@IRF6!1.16!14.97!IRF6;;chr1:40942922..40942997,+!p1@ZNF642!1.14!33.45!ZNF642;;chr8:80679993..80680011,-!p1@HEY1!1.14!18.72!HEY1;;chr3:40547564..40547616,+!p1@ZNF620!1.13!17.55!ZNF620;;chr2:172967323..172967336,-!p4@DLX2!1.13!12.63!DLX2;;chr2:176972047..176972063,+!p7@HOXD11!1.13!12.63!HOXD11;;chr7:96654026..96654061,-!p2@DLX5!1.13!12.63!DLX5;;chr2:177053386..177053402,+!p1@HOXD1!1.12!12.16!HOXD1;;chr2:73520667..73520683,-!p1@EGR4!1.11!11.93!EGR4;;chr5:170736243..170736279,+!p1@TLX3!1.11!11.93!TLX3;;chr20:18039673..18039676,-!p4@OVOL2!1.11!11.93!OVOL2;;chr12:54393880..54393962,+!p1@HOXC9!1.11!11.93!HOXC9;;chr20:32274179..32274213,-!p1@E2F1!1.10!77.90!E2F1;;chr20:31350184..31350200,+!p1@DNMT3B!1.10!24.33!DNMT3B;;chr17:46667628..46667642,-!p2@HOXB3!1.10!11.46!HOXB3;;chr2:45236579..45236596,-!p2@SIX2!1.08!11.00!SIX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.08!11.00!ZBED1;;chr17:42299455..42299485,-!p12@UBTF!1.07!15.21!UBTF;;chr18:72922743..72922761,+!p3@TSHZ1!1.06!35.09!TSHZ1;;chr9:114287433..114287513,+!p1@ZNF483!1.06!27.60!ZNF483;;chr7:156803329..156803362,-!p1@MNX1!1.06!10.53!MNX1;;chr16:52581025..52581072,-!p1@TOX3!1.06!10.53!TOX3;;chr17:46675619..46675642,-!p5@HOXB6!1.06!10.53!HOXB6;;chr1:214161328..214161348,+!p2@PROX1!1.05!10.29!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!1.05!10.29!NR0B2;;chr12:103352277..103352324,+!p2@ASCL1!1.05!10.29!ASCL1;;chr5:72744594..72744609,-!p1@FOXD1!1.04!46.09!FOXD1;;chr18:56940611..56940660,-!p1@RAX!1.04!10.06!RAX;;chr20:32274150..32274166,-!p2@E2F1!1.03!18.25!E2F1;;chr12:27485785..27485816,+!p1@ARNTL2!1.02!66.44!ARNTL2;;chr1:214161358..214161377,+!p3@PROX1!1.02!9.59!PROX1;;chr2:172967276..172967296,-!p3@DLX2!1.02!9.59!DLX2;;chr2:42721205..42721307,+!p4@MTA3!1.02!9.36!MTA3;;chr2:8822176..8822196,+!p1@ID2!1.00!1291.58!ID2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.61!E2F2;;chr10:124895472..124895508,+!p1@HMX3!1.00!8.89!HMX3;;chr9:99180617..99180658,-!p1@ZNF367!0.99!19.42!ZNF367;;chr17:46688334..46688385,-!p1@HOXB7!0.98!12.40!HOXB7;;chr2:172967353..172967365,-!p5@DLX2!0.98!8.66!DLX2;;chr2:176973498..176973524,+!p1@HOXD10!0.98!8.66!HOXD10;;chr7:27196267..27196311,-!p1@HOXA7!0.98!8.66!HOXA7;;chr5:176738887..176738934,-!p1@MXD3!0.97!57.32!MXD3;;chr1:23857325..23857416,-!p2@E2F2!0.97!9.83!E2F2;;chr6:31126291..31126399,+!p1@TCF19!0.96!80.01!TCF19;;chr6:10412392..10412409,-!p4@TFAP2A!0.96!9.36!TFAP2A;;chr7:96634908..96634923,+!p4@DLX6!0.96!8.19!DLX6;;chr20:18037473..18037494,-!p3@OVOL2!0.96!8.19!OVOL2;;chr18:55102598..55102623,+!p1@ONECUT2!0.96!8.19!ONECUT2;;chr9:124976185..124976212,-!p4@LHX6!0.95!7.95!LHX6;;chr13:100623375..100623425,-!p1@ZIC5!0.95!7.95!ZIC5;;chr2:176971980..176971995,+!p9@HOXD11!0.95!7.95!HOXD11;;chr9:96717678..96717689,-!p2@BARX1!0.95!7.95!BARX1;;chr2:176971685..176971700,+!p6@HOXD11!0.94!7.72!HOXD11;;chr2:239149300..239149321,-!p2@HES6!0.94!7.72!HES6;;chr8:60031809..60031835,-!p4@TOX!0.93!9.59!TOX;;chr7:27205106..27205134,-!p2@HOXA9!0.93!7.49!HOXA9;;chr7:96634850..96634874,+!p3@DLX6!0.93!7.49!DLX6;;chr9:124976154..124976177,-!p5@LHX6!0.93!7.49!LHX6;;chr20:50159198..50159299,-!p1@NFATC2!0.92!11.00!NFATC2;;chr16:52580953..52580992,-!p2@TOX3!0.92!7.25!TOX3;;chr17:46692457..46692484,-!p2@HOXB8!0.92!7.25!HOXB8;;chr12:103351694..103351704,+!p6@ASCL1!0.92!7.25!ASCL1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.92!7.25!HOXC5;;chr1:935467..935484,-!p1@HES4!0.91!33.22!HES4;;chr8:73921136..73921151,+!p2@TERF1!0.91!11.00!TERF1;;chr17:46622229..46622257,-!p6@HOXB2!0.91!8.42!HOXB2;;chr18:74072572..74072588,-!p2@ZNF516!0.90!11.46!ZNF516;;chrX:84499081..84499115,+!p2@ZNF711!0.90!10.53!ZNF711;;chr16:67197654..67197716,+!p3@HSF4!0.90!7.02!HSF4;;chr5:172662197..172662216,-!p1@NKX2-5!0.90!7.02!NKX2-5;;chr1:40627038..40627071,+!p1@RLF!0.89!92.64!RLF;;chr1:40997363..40997392,+!p2@ZNF684!0.89!8.89!ZNF684;;chr6:100061724..100061753,+!p1@PRDM13!0.89!6.78!PRDM13;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.78!HOXA6;;chr2:176969179..176969226,+!p2@HOXD11!0.89!6.78!HOXD11;;chr18:6414884..6414942,-!p1@L3MBTL4!0.87!8.19!L3MBTL4;;chr13:72441315..72441454,-!p1@DACH1!0.86!12.87!DACH1;;chrX:131624056..131624069,-!p2@MBNL3!0.86!8.66!MBNL3;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.32!DLX6;;chr1:40915725..40915808,+!p1@ZNF643!0.85!18.95!ZNF643;;chr13:37494365..37494381,-!p1@SMAD9!0.85!11.00!SMAD9;;chr6:100061760..100061774,+!p2@PRDM13!0.85!6.08!PRDM13;;chr8:65492915..65492932,+!p1@BHLHE22!0.85!6.08!BHLHE22;;chr5:137804484..137804498,+!p2@EGR1!0.84!25.50!EGR1;;chr1:40997285..40997352,+!p1@ZNF684!0.84!21.99!ZNF684;;chr2:71127699..71127744,+!p1@VAX2!0.84!12.63!VAX2;;chr8:60031762..60031803,-!p3@TOX!0.84!8.89!TOX;;chr2:176972082..176972096,+!p8@HOXD11!0.84!5.85!HOXD11;;chr20:42295713..42295738,+!p2@MYBL2!0.83!36.26!MYBL2;;chr18:72922811..72922827,+!p1@TSHZ1!0.83!30.18!TSHZ1;;chr5:134369905..134369972,-!p1@PITX1!0.83!9.12!PITX1;;chr17:17726907..17726958,-!p2@SREBF1!0.82!37.43!SREBF1;;chr2:60780753..60780800,-!p1@BCL11A!0.82!29.71!BCL11A;;chr1:41157363..41157416,+!p1@NFYC!0.81!112.29!NFYC;;chr20:42295745..42295765,+!p1@MYBL2!0.81!97.32!MYBL2;;chr8:22550982..22550999,-!p1@EGR3!0.81!16.38!EGR3;;chr22:42229210..42229229,+!p3@SREBF2!0.81!13.57!SREBF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.66!ZNF385A;;chrX:84498989..84499003,+!p1@ZNF711!0.81!7.72!ZNF711;;chr12:77459306..77459365,-!p1@E2F7!0.80!71.59!E2F7;;chr12:27485823..27485868,+!p2@ARNTL2!0.80!23.39!ARNTL2;;chr19:38085768..38085821,+!p1@ZNF540!0.80!8.19!ZNF540;;chr6:135502501..135502546,+!p1@MYB!0.80!6.55!MYB;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.80!6.55!ZNF775;;chr9:100615499..100615519,+!p1@FOXE1!0.80!5.38!FOXE1;;chr18:55102628..55102646,+!p2@ONECUT2!0.80!5.38!ONECUT2;;chr11:16629261..16629284,-!p1@SOX6!0.80!5.38!SOX6;;chr11:66188503..66188511,+!p1@NPAS4!0.80!5.38!NPAS4;;chr1:2461692..2461710,-!p1@HES5!0.80!5.38!HES5;;chr1:41157266..41157314,+!p3@NFYC!0.79!47.96!NFYC;;chr1:204042233..204042249,+!p1@SOX13!0.79!35.56!SOX13;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.21!SALL2;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.08!HOXB6;;chr10:124907645..124907660,+!p1@HMX2!0.79!5.15!HMX2;;chr5:137801160..137801176,+!p1@EGR1!0.78!545.31!EGR1;;chr12:2986206..2986258,-!p2@FOXM1!0.78!33.22!FOXM1;;chr14:61191018..61191048,-!p1@SIX4!0.78!11.70!SIX4;;chr7:27213893..27213954,-!p1@HOXA10!0.77!4.91!HOXA10;;chr17:46703687..46703740,-!p1@HOXB9!0.77!4.91!HOXB9;;chr20:62795834..62795878,+!p2@MYT1!0.77!4.91!MYT1;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.67!BCL11A;;chr8:60031682..60031710,-!p2@TOX!0.76!8.19!TOX;;chr1:41157326..41157337,+!p5@NFYC!0.76!7.72!NFYC;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.55!PRDM8;;chr19:45971246..45971265,+!p1@FOSB!0.75!95.68!FOSB;;chr13:73633131..73633149,+!p1@KLF5!0.75!54.51!KLF5;;chr20:2673383..2673441,+!p1@EBF4!0.75!7.72!EBF4;;chr5:137804357..137804390,+!p4@EGR1!0.75!5.61!EGR1;;chr17:38020392..38020477,-!p1@IKZF3!0.75!4.68!IKZF3;;chr2:46524897..46524911,+!p2@EPAS1!0.74!13.57!EPAS1;;chr8:80680024..80680046,-!p2@HEY1!0.74!5.15!HEY1;;chr19:9609272..9609297,-!p1@ZNF560!0.74!4.44!ZNF560;;chr13:72441074..72441172,-!p2@DACH1!0.74!4.44!DACH1;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.44!HOXD3;;chr15:68115672..68115691,+!p1@SKOR1!0.74!4.44!SKOR1;;chr17:46690839..4669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B2!0.27!18.01!DDB2;;chr19:53898380..53898422,+!p1@ZNF765!0.27!9.59!ZNF765;;chr19:35759976..35760042,+!p4@USF2!0.27!8.19!USF2;;chr19:58090240..58090289,-!p1@ZNF416!0.27!7.72!ZNF416;;chr16:3285144..3285191,-!p1@ZNF200!0.27!7.49!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!0.27!7.02!ZNF467;;chr19:44331493..44331552,+!p1@ZNF283!0.27!5.38!ZNF283;;chr19:52674696..52674758,-!p1@ZNF836!0.27!4.21!ZNF836;;chr1:91487774..91487802,-!p2@ZNF644!0.27!3.74!ZNF644;;chr7:99647411..99647433,+!p2@ZSCAN21!0.27!3.74!ZSCAN21;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.27!3.04!TCF20;;chr2:200323414..200323455,-!p1@SATB2!0.27!2.81!SATB2;;chr2:37458749..37458766,-!p2@CEBPZ!0.27!2.81!CEBPZ;;chr4:146402843..146402864,+!p3@SMAD1!0.27!2.57!SMAD1;;chr19:57752200..57752254,+!p3@ZNF805!0.27!2.57!ZNF805;;chr1:33004734..33004807,+!p2@ZBTB8A!0.27!2.34!ZBTB8A;;chr3:170075357..170075368,+!p3@SKIL!0.27!1.87!SKIL;;chr3:47823298..47823423,-!p1@SMARCC1!0.26!56.15!SMARCC1;;chr17:73780879..73780963,+!p1@UNK!0.26!27.14!UNK;;chr6:122720765..122720831,+!p1@HSF2!0.26!21.76!HSF2;;chr20:18269151..18269212,+!p1@ZNF133!0.26!13.33!ZNF133;;chr9:104161123..104161205,+!p1@ZNF189!0.26!11.00!ZNF189;;chr14:89883509..89883587,-!p2@FOXN3!0.26!10.53!FOXN3;;chr19:56110859..56110917,-!p1@FIZ1!0.26!10.06!FIZ1;;chr19:56826201..56826247,-!p1@ZSCAN5A!0.26!10.06!ZSCAN5A;;chr3:44519131..44519186,-!p1@ZNF445!0.26!8.42!ZNF445;;chr19:11071546..11071624,+!p2@SMARCA4!0.26!8.42!SMARCA4;;chr19:58361185..58361235,+!p2@ZNF587!0.26!8.19!ZNF587;;chr19:9546227..9546257,-!p2@ZNF266!0.26!7.72!ZNF266;;chr17:42298615..42298692,-!p2@UBTF!0.26!7.72!UBTF;;chr19:53073532..53073551,+!p1@ZNF701!0.26!6.78!ZNF701;;chr16:71918033..71918101,-!p1@ZNF821!0.26!5.38!ZNF821;;chr8:28748099..28748141,+!p2@HMBOX1!0.26!4.44!HMBOX1;;chr19:40596789..40596825,-!p2@ZNF780A!0.26!4.21!ZNF780A;;chr1:164528340..164528379,+!p4@PBX1!0.26!3.28!PBX1;;chr20:3388207..3388236,-!p4@C20orf194!0.26!3.28!C20orf194;;chr16:54320675..54320715,-!p1@IRX3!0.26!2.81!IRX3;;chr3:126194815..126194848,-!p2@ZXDC!0.26!2.81!ZXDC;;chr7:86781778..86781789,+!p4@DMTF1!0.26!2.57!DMTF1;;chr12:50479101..50479108,+!p3@SMARCD1!0.26!1.87!SMARCD1;;chr19:12551785..12551823,-!p1@ZNF443!0.26!1.87!ZNF443;;chr11:130184623..130184634,-!p6@ZBTB44!0.26!1.17!ZBTB44;;chr1:41204530..41204541,+!p8@NFYC!0.26!1.17!NFYC;;chr6:126112074..126112144,+!p1@NCOA7!0.25!21.29!NCOA7;;chr12:122516646..122516668,+!p1@MLXIP!0.25!21.05!MLXIP;;chr20:35201993..35202050,+!p1@TGIF2!0.25!17.78!TGIF2;;chr6:41514078..41514158,+!p1@FOXP4!0.25!13.80!FOXP4;;chr3:141868293..141868355,-!p2@TFDP2!0.25!13.33!TFDP2;;chr3:141747459..141747475,-!p1@TFDP2!0.25!12.63!TFDP2;;chr12:6798616..6798684,-!p2@ZNF384!0.25!10.29!ZNF384;;chr19:9434841..9434886,+!p1@ZNF559!0.25!7.49!ZNF559;;chr19:40596828..40596855,-!p1@ZNF780A!0.25!6.08!ZNF780A;;chr19:58331073..58331084,+!p3@ZNF587!0.25!5.38!ZNF587;;chr19:53696587..53696633,-!p1@ZNF665!0.25!5.15!ZNF665;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.25!5.15!ZNF670;;chr21:44394742..44394756,+!p2@PKNOX1!0.25!2.81!PKNOX1;;chr2:208030886..208030917,-!p4@KLF7!0.25!2.34!KLF7;;chr3:44626446..44626477,+!p1@ZNF660!0.25!2.11!ZNF660;;chr6:15249128..15249177,+!p4@JARID2!0.25!2.11!JARID2;;chr7:6676930..6676939,+!p3@ENST00000427912!0.25!2.11!ZNF316;;chr14:89029308..89029318,+!p3@ZC3H14!0.25!1.87!ZC3H14;;chr19:35417798..35417842,+!p1@ZNF30!0.25!1.87!ZNF30;;chr3:170075124..170075136,+!p4@SKIL!0.25!1.40!SKIL;;chr12:11802547..11802560,+!p5@ETV6!0.25!1.40!ETV6;;chr11:8102819..8102845,+!p3@TUB!0.25!1.17!TUB;;chr19:2819943..2819977,+!p2@ZNF554!0.25!1.17!ZNF554;;chr1:249153309..249153330,-!p4@ZNF692!0.25!1.17!ZNF692;;chr6:10415276..10415341,-!p2@TFAP2A!0.25!1.17!TFAP2A;;
@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10800-110I8
 |is_a=EFO:0002091;;FF:0000210;;FF:0101967
 |is_obsolete=
+|library_id=CNhs11885
+|library_id_phase_based=2:CNhs11885
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10800
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10800
 |name=small cell cervical cancer cell line:HCSC-1
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11885,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10800-110I8;search_select_hide=table117:FF:10800-110I8
 }}

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FF:10800-110I8: Difference between revisions

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Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0