FF:10805-111A4: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	anaplastic squamous cell carcinoma cell line:RPMI 2650
Species:	Human (Homo sapiens)
Library ID:	CNhs11889
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	nasal septum
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	RPMI 2650
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005598

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11889		CAGE		DRX007828		DRR008700

Accession ID Hg19

Library id		BAM		CTSS
CNhs11889		DRZ000125		DRZ001510

Accession ID Hg38

Library id		BAM		CTSS
CNhs11889		DRZ011475		DRZ012860

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005598

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10086		RNA-Seq		DRX057143		DRR062902

Accession ID Hg19

Library id		BAM		CTSS
RDhi10086		DRZ007978

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.513
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.526
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0832
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0832
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.153
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	1.038
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.153
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0842
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.527
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0832
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0832
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0832
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.456
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.153
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11889

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.9008e-5
MA0003.1	MA0003.1	0.0234
MA0004.1	MA0004.1	0.849
MA0006.1	MA0006.1	0.495
MA0007.1	MA0007.1	0.305
MA0009.1	MA0009.1	0.991
MA0014.1	MA0014.1	0.526
MA0017.1	MA0017.1	0.0619
MA0018.2	MA0018.2	0.19
MA0019.1	MA0019.1	0.0995
MA0024.1	MA0024.1	6.90328e-4
MA0025.1	MA0025.1	0.357
MA0027.1	MA0027.1	0.849
MA0028.1	MA0028.1	0.3
MA0029.1	MA0029.1	0.912
MA0030.1	MA0030.1	0.649
MA0031.1	MA0031.1	0.524
MA0035.2	MA0035.2	0.264
MA0038.1	MA0038.1	0.111
MA0039.2	MA0039.2	0.31
MA0040.1	MA0040.1	0.265
MA0041.1	MA0041.1	0.323
MA0042.1	MA0042.1	0.637
MA0043.1	MA0043.1	0.7
MA0046.1	MA0046.1	0.936
MA0047.2	MA0047.2	0.362
MA0048.1	MA0048.1	0.119
MA0050.1	MA0050.1	0.00237
MA0051.1	MA0051.1	0.023
MA0052.1	MA0052.1	0.482
MA0055.1	MA0055.1	0.00488
MA0057.1	MA0057.1	0.418
MA0058.1	MA0058.1	0.934
MA0059.1	MA0059.1	0.753
MA0060.1	MA0060.1	1.48527e-5
MA0061.1	MA0061.1	0.00181
MA0062.2	MA0062.2	0.996
MA0065.2	MA0065.2	0.209
MA0066.1	MA0066.1	0.15
MA0067.1	MA0067.1	0.832
MA0068.1	MA0068.1	0.309
MA0069.1	MA0069.1	0.633
MA0070.1	MA0070.1	0.604
MA0071.1	MA0071.1	0.874
MA0072.1	MA0072.1	0.779
MA0073.1	MA0073.1	0.0787
MA0074.1	MA0074.1	0.317
MA0076.1	MA0076.1	0.203
MA0077.1	MA0077.1	0.546
MA0078.1	MA0078.1	0.636
MA0079.2	MA0079.2	0.722
MA0080.2	MA0080.2	6.15892e-10
MA0081.1	MA0081.1	0.0521
MA0083.1	MA0083.1	0.0218
MA0084.1	MA0084.1	0.904
MA0087.1	MA0087.1	0.624
MA0088.1	MA0088.1	0.389
MA0090.1	MA0090.1	0.566
MA0091.1	MA0091.1	0.0254
MA0092.1	MA0092.1	0.14
MA0093.1	MA0093.1	0.804
MA0099.2	MA0099.2	1.6981e-11
MA0100.1	MA0100.1	0.332
MA0101.1	MA0101.1	0.015
MA0102.2	MA0102.2	0.0437
MA0103.1	MA0103.1	0.621
MA0104.2	MA0104.2	0.583
MA0105.1	MA0105.1	4.0459e-4
MA0106.1	MA0106.1	0.556
MA0107.1	MA0107.1	0.00183
MA0108.2	MA0108.2	0.307
MA0111.1	MA0111.1	0.428
MA0112.2	MA0112.2	3.6584e-5
MA0113.1	MA0113.1	0.406
MA0114.1	MA0114.1	0.344
MA0115.1	MA0115.1	0.392
MA0116.1	MA0116.1	0.0078
MA0117.1	MA0117.1	0.649
MA0119.1	MA0119.1	0.551
MA0122.1	MA0122.1	0.525
MA0124.1	MA0124.1	0.317
MA0125.1	MA0125.1	0.187
MA0131.1	MA0131.1	0.102
MA0135.1	MA0135.1	0.0672
MA0136.1	MA0136.1	4.99375e-9
MA0137.2	MA0137.2	0.0341
MA0138.2	MA0138.2	0.0564
MA0139.1	MA0139.1	0.391
MA0140.1	MA0140.1	0.389
MA0141.1	MA0141.1	0.299
MA0142.1	MA0142.1	0.799
MA0143.1	MA0143.1	0.619
MA0144.1	MA0144.1	0.00432
MA0145.1	MA0145.1	0.0393
MA0146.1	MA0146.1	0.803
MA0147.1	MA0147.1	0.54
MA0148.1	MA0148.1	0.646
MA0149.1	MA0149.1	0.537
MA0150.1	MA0150.1	4.94233e-4
MA0152.1	MA0152.1	0.915
MA0153.1	MA0153.1	0.366
MA0154.1	MA0154.1	0.00264
MA0155.1	MA0155.1	0.435
MA0156.1	MA0156.1	1.57511e-5
MA0157.1	MA0157.1	0.0961
MA0159.1	MA0159.1	0.0651
MA0160.1	MA0160.1	0.216
MA0162.1	MA0162.1	0.268
MA0163.1	MA0163.1	0.113
MA0164.1	MA0164.1	0.939
MA0258.1	MA0258.1	0.0404
MA0259.1	MA0259.1	0.267

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11889

Novel motif	Logo	P-value
1	1	0.517
10	10	0.53
100	100	0.454
101	101	0.181
102	102	0.583
103	103	0.00451
104	104	0.638
105	105	0.933
106	106	0.00118
107	107	0.048
108	108	0.464
109	109	0.208
11	11	0.398
110	110	0.821
111	111	0.847
112	112	0.283
113	113	0.348
114	114	0.063
115	115	0.138
116	116	0.793
117	117	0.91
118	118	0.624
119	119	0.756
12	12	0.876
120	120	0.273
121	121	0.851
122	122	0.34
123	123	0.00212
124	124	0.379
125	125	0.94
126	126	0.14
127	127	0.0751
128	128	0.146
129	129	0.286
13	13	0.799
130	130	0.481
131	131	0.356
132	132	0.883
133	133	0.46
134	134	0.415
135	135	0.0576
136	136	0.444
137	137	0.572
138	138	0.452
139	139	0.774
14	14	0.861
140	140	0.391
141	141	0.799
142	142	0.431
143	143	4.71542e-4
144	144	0.912
145	145	0.89
146	146	0.497
147	147	0.482
148	148	0.00396
149	149	0.274
15	15	0.277
150	150	0.416
151	151	0.591
152	152	0.0368
153	153	0.935
154	154	0.928
155	155	0.406
156	156	0.492
157	157	0.466
158	158	0.946
159	159	0.47
16	16	0.236
160	160	0.427
161	161	0.7
162	162	0.42
163	163	0.149
164	164	0.81
165	165	0.233
166	166	0.9
167	167	0.238
168	168	0.0526
169	169	0.152
17	17	0.236
18	18	0.0526
19	19	0.105
2	2	0.199
20	20	0.173
21	21	0.894
22	22	0.125
23	23	0.00423
24	24	0.159
25	25	0.546
26	26	0.541
27	27	0.121
28	28	0.686
29	29	0.507
3	3	0.526
30	30	0.29
31	31	0.671
32	32	0.00921
33	33	0.385
34	34	0.304
35	35	0.662
36	36	0.577
37	37	0.16
38	38	0.673
39	39	0.323
4	4	0.726
40	40	0.851
41	41	0.0152
42	42	0.867
43	43	0.114
44	44	0.25
45	45	0.254
46	46	0.184
47	47	0.791
48	48	0.956
49	49	0.536
5	5	0.192
50	50	0.743
51	51	0.429
52	52	0.245
53	53	0.597
54	54	0.34
55	55	0.768
56	56	0.798
57	57	0.453
58	58	0.186
59	59	0.00433
6	6	0.362
60	60	0.0486
61	61	0.833
62	62	0.0399
63	63	0.358
64	64	0.595
65	65	0.152
66	66	0.469
67	67	0.695
68	68	0.849
69	69	0.988
7	7	0.643
70	70	0.321
71	71	0.137
72	72	0.204
73	73	0.137
74	74	0.0272
75	75	0.625
76	76	0.541
77	77	0.0752
78	78	0.542
79	79	0.0431
8	8	0.462
80	80	0.0598
81	81	0.629
82	82	0.151
83	83	0.313
84	84	0.341
85	85	0.0116
86	86	0.466
87	87	0.238
88	88	0.977
89	89	0.064
9	9	0.058
90	90	0.949
91	91	0.536
92	92	0.248
93	93	0.0965
94	94	0.385
95	95	0.514
96	96	0.579
97	97	0.778
98	98	0.657
99	99	0.626

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11889

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104205 RPMI-2650 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0104204 (nasal squamous cell carcinoma cell line sample)
0104205 (RPMI-2650 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007723
+|DRA_sample_Accession=CAGE@SAMD00005598
-|accession_numbers=CAGE;DRX007828;DRR008700;DRZ000125;DRZ001510
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005598
+|accession_numbers=CAGE;DRX007828;DRR008700;DRZ000125;DRZ001510;DRZ011475;DRZ012860
+|accession_numbers_RNASeq=RNA-Seq;DRX057143;DRR062902;DRZ007978
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!3.08!1200.25!DLX5;;chr13:72441315..72441454,-!p1@DACH1!2.47!563.49!DACH1;;chr14:37131058..37131139,+!p1@PAX9!2.36!229.28!PAX9;;chr5:134369879..134369898,-!p2@PITX1!2.07!115.70!PITX1;;chr5:134369905..134369972,-!p1@PITX1!2.05!168.06!PITX1;;chr11:34642612..34642646,+!p1@EHF!2.01!100.71!EHF;;chr7:96635178..96635181,+!p1@DLX6!1.99!96.70!DLX6;;chr2:16080659..16080685,+!p1@MYCN!1.95!88.04!MYCN;;chr7:96634878..96634900,+!p2@DLX6!1.93!84.66!DLX6;;chr14:33403881..33403924,+!p1@NPAS3!1.93!84.45!NPAS3;;chr17:48072574..48072597,-!p1@DLX3!1.92!82.55!DLX3;;chr22:19748231..19748317,+!p1@TBX1!1.90!78.96!TBX1;;chr8:22550982..22550999,-!p1@EGR3!1.87!197.61!EGR3;;chr13:72441074..72441172,-!p2@DACH1!1.83!66.08!DACH1;;chr11:34645791..34645836,+!p3@EHF!1.80!62.49!EHF;;chr7:96634908..96634923,+!p4@DLX6!1.80!62.49!DLX6;;chr3:114173720..114173794,-!p6@ZBTB20!1.72!51.30!ZBTB20;;chr14:37051798..37051831,-!p1@NKX2-8!1.71!50.04!NKX2-8;;chr20:22565370..22565388,-!p2@FOXA2!1.71!50.04!FOXA2;;chr20:22564895..22564910,-!p1@FOXA2!1.65!43.49!FOXA2;;chr12:54384370..54384382,+!p5@HOXC6!1.61!40.11!HOXC6;;chr8:22550530..22550609,-!p2@EGR3!1.56!35.47!EGR3;;chr17:74137321..74137337,-!p1@FOXJ1!1.56!35.26!FOXJ1;;chr22:19746969..19746987,+!p2@TBX1!1.56!35.05!TBX1;;chr17:48046642..48046667,+!p3@DLX4!1.51!31.25!DLX4;;chr12:54348655..54348693,+!p1@HOXC12!1.49!29.98!HOXC12;;chr3:141103634..141103665,+!p18@ZBTB38!1.49!29.77!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!1.45!27.02!OTX1;;chr11:44331576..44331650,-!p1@ALX4!1.45!27.02!ALX4;;chr3:114819073..114819100,-!p10@ZBTB20!1.43!26.18!ZBTB20;;chr1:25256756..25256774,-!p1@RUNX3!1.42!47.29!RUNX3;;chr11:44331679..44331702,-!p2@ALX4!1.40!24.28!ALX4;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.26!KLF5;;chr17:48046671..48046697,+!p4@DLX4!1.39!23.43!DLX4;;chr3:114819101..114819121,-!p7@ZBTB20!1.38!23.22!ZBTB20;;chr12:54380036..54380091,+!p4@HOXC10!1.38!22.80!HOXC10;;chr14:37051600..37051611,-!p2@NKX2-8!1.37!22.59!NKX2-8;;chr9:16728047..16728061,-!p8@BNC2!1.35!21.32!BNC2;;chr7:96635277..96635301,+!p7@DLX6!1.34!21.11!DLX6;;chr17:45928521..45928539,-!p1@SP6!1.34!20.90!SP6;;chr5:174151553..174151610,+!p1@MSX2!1.32!33.15!MSX2;;chr15:76629123..76629151,+!p1@ISL2!1.32!22.17!ISL2;;chr9:16728327..16728338,-!p5@BNC2!1.32!19.85!BNC2;;chr19:12163769..12163798,-!p1@ZNF878!1.31!24.91!ZNF878;;chr9:16728161..16728185,-!p4@BNC2!1.31!19.21!BNC2;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.11!IRF6;;chr1:164528687..164528711,+!p6@PBX1!1.27!20.27!PBX1;;chr3:114173654..114173696,-!p12@ZBTB20!1.27!17.73!ZBTB20;;chr8:67525443..67525459,-!p2@MYBL1!1.25!24.70!MYBL1;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.89!HOXC11;;chr10:63661437..63661465,+!p2@ARID5B!1.22!293.89!ARID5B;;chr17:48046881..48046905,+!p5@DLX4!1.22!15.62!DLX4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.22!15.41!HOXC5;;chr7:150945754..150945789,-!p2@SMARCD3!1.20!45.39!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.38!ZNF385A;;chr12:54348702..54348715,+!p2@HOXC12!1.19!14.57!HOXC12;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.57!HOXC10;;chr5:174151612..174151633,+!p2@MSX2!1.19!14.57!MSX2;;chr14:37051768..37051779,-!p4@NKX2-8!1.19!14.36!NKX2-8;;chr10:70320074..70320106,+!p1@TET1!1.18!28.50!TET1;;chr9:16870710..16870763,-!p1@BNC2!1.18!24.49!BNC2;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.15!KDM5D;;chr6:21597765..21597779,+!p2@SOX4!1.17!109.57!SOX4;;chr11:34642656..34642667,+!p2@EHF!1.17!13.93!EHF;;chr14:33403648..33403710,+!p3@NPAS3!1.17!13.93!NPAS3;;chr9:96717629..96717644,-!p1@BARX1!1.17!13.72!BARX1;;chr2:63277978..63277995,+!p2@OTX1!1.16!13.51!OTX1;;chr17:7197911..7197964,-!p1@YBX2!1.16!13.30!YBX2;;chr12:54366780..54366791,+!p12@HOXC11!1.15!13.09!HOXC11;;chr12:54366975..54367001,+!p1@HOXC11!1.14!12.88!HOXC11;;chr14:36989940..36989957,-!p2@NKX2-1!1.14!12.88!NKX2-1;;chr3:114173558..114173571,-!p19@ZBTB20!1.14!12.67!ZBTB20;;chr6:21593973..21593988,+!p1@SOX4!1.13!442.73!SOX4;;chr2:85981969..85982019,+!p6@ATOH8!1.12!12.03!ATOH8;;chr3:114819047..114819069,-!p16@ZBTB20!1.11!11.82!ZBTB20;;chr7:96634850..96634874,+!p3@DLX6!1.11!11.82!DLX6;;chr19:38720294..38720348,-!p1@DPF1!1.10!14.36!DPF1;;chr9:16870659..16870675,-!p2@BNC2!1.10!14.15!BNC2;;chr13:72440901..72440968,-!p4@DACH1!1.09!11.40!DACH1;;chr17:48049323..48049330,+!p6@DLX4!1.09!11.40!DLX4;;chr16:67197654..67197716,+!p3@HSF4!1.09!11.19!HSF4;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.19!DLX5;;chr7:86781916..86781963,+!p2@DMTF1!1.06!46.45!DMTF1;;chr12:54694758..54694805,-!p1@NFE2!1.06!12.88!NFE2;;chr3:141103589..141103603,+!p34@ZBTB38!1.06!10.56!ZBTB38;;chr9:16727978..16728010,-!p6@BNC2!1.06!10.56!BNC2;;chr7:96635665..96635685,+!p6@DLX6!1.06!10.56!DLX6;;chr3:193853927..193853944,+!p1@HES1!1.05!335.06!HES1;;chr6:20402102..20402152,+!p1@E2F3!1.05!42.01!E2F3;;chr14:36989913..36989931,-!p6@NKX2-1!1.05!10.35!NKX2-1;;chr14:37051707..37051716,-!p5@NKX2-8!1.05!10.35!NKX2-8;;chr1:2985760..2985774,+!p1@PRDM16!1.05!10.35!PRDM16;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.06!RCOR2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.03!20.90!ZNF395;;chr2:25475120..25475176,-!p2@DNMT3A!1.00!12.25!DNMT3A;;chr3:114173859..114173873,-!p15@ZBTB20!1.00!9.08!ZBTB20;;chr7:96635448..96635470,+!p5@DLX6!1.00!9.08!DLX6;;chr19:49864746..49864780,-!p2@TEAD2!0.99!12.25!TEAD2;;chr5:176738887..176738934,-!p1@MXD3!0.98!58.90!MXD3;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.50!ARID5B;;chr14:21994337..21994442,-!p1@SALL2!0.98!24.07!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!0.98!10.35!ZBTB38;;chr1:35644482..35644486,-!p11@SFPQ!0.98!9.71!SFPQ;;chr2:85980919..85980942,+!p4@ATOH8!0.98!9.08!ATOH8;;chr11:44331735..44331747,-!p3@ALX4!0.98!8.45!ALX4;;chrX:25034067..25034088,-!p1@ARX!0.98!8.45!ARX;;chr9:16727880..16727894,-!p10@BNC2!0.98!8.45!BNC2;;chr6:21597600..21597664,+!p3@SOX4!0.97!14.15!SOX4;;chrX:84499081..84499115,+!p2@ZNF711!0.97!12.46!ZNF711;;chrX:84498989..84499003,+!p1@ZNF711!0.97!11.61!ZNF711;;chr18:42260840..42260860,+!p2@SETBP1!0.97!8.23!SETBP1;;chr12:54332608..54332636,+!p1@HOXC13!0.97!8.23!HOXC13;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr15:57210961..57211012,+!p3@TCF12!0.96!26.81!TCF12;;chr1:23857325..23857416,-!p2@E2F2!0.96!9.50!E2F2;;chr3:48282587..48282603,+!p1@ZNF589!0.95!36.31!ZNF589;;chr2:85980768..85980783,+!p10@ATOH8!0.95!7.81!ATOH8;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.81!HAND1;;chr3:141121847..141121868,+!p5@ZBTB38!0.94!12.03!ZBTB38;;chr14:33408072..33408114,+!p2@NPAS3!0.94!9.29!NPAS3;;chr19:35417939..35417963,+!p3@ZNF30!0.93!9.71!ZNF30;;chr7:96635329..96635357,+!p9@DLX6!0.93!7.60!DLX6;;chr12:54332652..54332671,+!p2@HOXC13!0.92!7.39!HOXC13;;chr14:37131404..37131412,+!p15@PAX9!0.92!7.39!PAX9;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.01!ZNF92;;chr6:21597514..21597578,+!p4@SOX4!0.91!12.25!SOX4;;chr5:134369973..134369984,-!p3@PITX1!0.91!7.18!PITX1;;chr8:49833978..49833996,-!p1@SNAI2!0.90!151.17!SNAI2;;chr19:20959098..20959117,+!p1@ZNF66P!0.90!29.98!ZNF66P;;chr13:74708029..74708077,-!p2@KLF12!0.90!20.69!KLF12;;chr20:6748325..6748352,+!p1@BMP2!0.90!10.35!BMP2;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.45!ZNF714;;chr16:49698534..49698564,-!p4@ZNF423!0.89!6.76!ZNF423;;chr13:72441259..72441268,-!p8@DACH1!0.89!6.76!DACH1;;chr1:41174988..41175047,+!p4@NFYC!0.88!18.16!NFYC;;chr14:69262789..69262822,-!p2@ZFP36L1!0.88!17.73!ZFP36L1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.88!14.99!SOHLH2;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.54!NPAS3;;chr2:16080635..16080650,+!p4@MYCN!0.88!6.54!MYCN;;chr2:71127699..71127744,+!p1@VAX2!0.87!13.72!VAX2;;chr6:44355325..44355340,+!p4@CDC5L!0.87!7.60!CDC5L;;chr22:19747040..19747054,+!p3@TBX1!0.87!6.33!TBX1;;chr1:2985726..2985752,+!p2@PRDM16!0.87!6.33!PRDM16;;chr8:116681409..116681431,-!p2@TRPS1!0.86!17.95!TRPS1;;chr11:707063..707088,-!p4@DEAF1!0.86!8.02!DEAF1;;chr12:50479109..50479146,+!p2@SMARCD1!0.85!110.00!SMARCD1;;chr7:150974206..150974255,-!p1@SMARCD3!0.85!40.11!SMARCD3;;chr5:321810..321877,+!p1@AHRR!0.85!20.27!AHRR;;chr2:85980868..85980880,+!p12@ATOH8!0.85!6.12!ATOH8;;chr12:54785054..54785072,-!p4@ZNF385A!0.84!6.76!ZNF385A;;chr8:67525473..67525518,-!p1@MYBL1!0.83!13.93!MYBL1;;chr15:80696666..80696700,+!p4@ARNT2!0.83!5.70!ARNT2;;chr12:54366949..54366973,+!p3@HOXC11!0.83!5.70!HOXC11;;chr12:54694807..54694832,-!p3@NFE2!0.83!5.70!NFE2;;chr20:32274179..32274213,-!p1@E2F1!0.82!40.11!E2F1;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!18.16!HIVEP1;;chr19:23299814..23299844,+!p1@ZNF730!0.81!6.76!ZNF730;;chr10:70320041..70320065,+!p2@TET1!0.81!5.49!TET1;;chr12:54380404..54380433,+!p3@HOXC10!0.81!5.49!HOXC10;;chr13:72441506..72441562,-!p3@DACH1!0.81!5.49!DACH1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.49!ZFY;;chr3:44596679..44596726,+!p1@ZNF167!0.80!25.12!ZNF167;;chr6:12011943..12012015,+!p2@HIVEP1!0.80!18.16!HIVEP1;;chr12:51566562..51566584,-!p2@TFCP2!0.80!16.05!TFCP2;;chr1:247171347..247171366,-!p2@ZNF695!0.80!10.13!ZNF695;;chr8:73921136..73921151,+!p2@TERF1!0.80!8.23!TERF1;;chr12:57504069..57504090,-!p7@STAT6!0.80!5.28!STAT6;;chr9:16728072..16728081,-!p22@BNC2!0.80!5.28!BNC2;;chr2:239148671..239148686,-!p1@HES6!0.79!20.48!HES6;;chr14:21994449..21994524,-!p2@SALL2!0.79!16.47!SALL2;;chr4:121843985..121844024,-!p2@PRDM5!0.79!12.03!PRDM5;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.79!7.60!TGIF2;;chr8:81398682..81398697,+!p6@ZBTB10!0.79!6.97!ZBTB10;;chr1:114301755..114301796,-!p3@PHTF1!0.79!5.91!PHTF1;;chr17:38219209..38219230,+!p1@THRA!0.78!71.99!THRA;;chr19:19729477..19729542,-!p1@PBX4!0.78!11.40!PBX4;;chr19:56988677..56988729,-!p1@ZNF667!0.78!9.29!ZNF667;;chr5:178322893..178322931,+!p1@ZFP2!0.78!7.60!ZFP2;;chr8:22550700..22550717,-!p4@EGR3!0.78!5.07!EGR3;;chr20:22565185..22565223,-!p3@FOXA2!0.78!5.07!FOXA2;;chr14:33403779..33403793,+!p6@NPAS3!0.78!5.07!NPAS3;;chr14:37131415..37131422,+!p18@PAX9!0.78!5.07!PAX9;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.60!TEAD2;;chr6:12012536..12012554,+!p4@HIVEP1!0.77!12.46!HIVEP1;;chr7:21467150..21467172,+!p5@SP4!0.77!6.12!SP4;;chr7:96654015..96654018,-!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@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10805-111A4
 |is_a=EFO:0002091;;FF:0000210;;FF:0104205
 |is_obsolete=
 |library_id=CNhs11889
+|library_id_phase_based=2:CNhs11889
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10805
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10805
 |name=anaplastic squamous cell carcinoma cell line:RPMI 2650
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11889,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 64: / Line 78: @@
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 |sample_category=cell lines
@@ Line 87: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10805-111A4;search_select_hide=table117:FF:10805-111A4
 }}

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FF:10805-111A4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0