FF:10826-111C7: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3
Species:	Human (Homo sapiens)
Library ID:	CNhs12336
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	53
cell type	granulocyte
cell line	K562
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005508

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12336		CAGE		DRX007857		DRR008729

Accession ID Hg19

Library id		BAM		CTSS
CNhs12336		DRZ000154		DRZ001539

Accession ID Hg38

Library id		BAM		CTSS
CNhs12336		DRZ011504		DRZ012889

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.685
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.0674
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0295
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0634
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.183
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00818
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.309
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0.975
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12336

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.455
MA0003.1	MA0003.1	0.671
MA0004.1	MA0004.1	0.302
MA0006.1	MA0006.1	0.164
MA0007.1	MA0007.1	0.604
MA0009.1	MA0009.1	0.44
MA0014.1	MA0014.1	0.24
MA0017.1	MA0017.1	0.192
MA0018.2	MA0018.2	0.289
MA0019.1	MA0019.1	0.653
MA0024.1	MA0024.1	1.35942e-6
MA0025.1	MA0025.1	0.952
MA0027.1	MA0027.1	0.538
MA0028.1	MA0028.1	5.5852e-10
MA0029.1	MA0029.1	0.00271
MA0030.1	MA0030.1	0.599
MA0031.1	MA0031.1	0.313
MA0035.2	MA0035.2	2.21009e-22
MA0038.1	MA0038.1	0.303
MA0039.2	MA0039.2	0.0143
MA0040.1	MA0040.1	0.053
MA0041.1	MA0041.1	0.619
MA0042.1	MA0042.1	0.54
MA0043.1	MA0043.1	0.915
MA0046.1	MA0046.1	0.694
MA0047.2	MA0047.2	0.944
MA0048.1	MA0048.1	0.196
MA0050.1	MA0050.1	8.99034e-7
MA0051.1	MA0051.1	1.35591e-6
MA0052.1	MA0052.1	0.0154
MA0055.1	MA0055.1	3.93607e-4
MA0057.1	MA0057.1	0.666
MA0058.1	MA0058.1	0.0564
MA0059.1	MA0059.1	0.00563
MA0060.1	MA0060.1	7.74926e-19
MA0061.1	MA0061.1	0.606
MA0062.2	MA0062.2	3.21693e-13
MA0065.2	MA0065.2	0.0343
MA0066.1	MA0066.1	0.665
MA0067.1	MA0067.1	0.965
MA0068.1	MA0068.1	0.0185
MA0069.1	MA0069.1	0.683
MA0070.1	MA0070.1	0.167
MA0071.1	MA0071.1	0.171
MA0072.1	MA0072.1	0.241
MA0073.1	MA0073.1	0.99
MA0074.1	MA0074.1	0.121
MA0076.1	MA0076.1	3.15045e-14
MA0077.1	MA0077.1	0.333
MA0078.1	MA0078.1	0.248
MA0079.2	MA0079.2	0.54
MA0080.2	MA0080.2	0.573
MA0081.1	MA0081.1	0.0354
MA0083.1	MA0083.1	0.314
MA0084.1	MA0084.1	0.956
MA0087.1	MA0087.1	0.143
MA0088.1	MA0088.1	6.19267e-4
MA0090.1	MA0090.1	0.00336
MA0091.1	MA0091.1	0.869
MA0092.1	MA0092.1	0.407
MA0093.1	MA0093.1	0.164
MA0099.2	MA0099.2	0.795
MA0100.1	MA0100.1	0.00599
MA0101.1	MA0101.1	0.546
MA0102.2	MA0102.2	0.00788
MA0103.1	MA0103.1	0.544
MA0104.2	MA0104.2	2.99063e-4
MA0105.1	MA0105.1	0.0775
MA0106.1	MA0106.1	0.938
MA0107.1	MA0107.1	0.0369
MA0108.2	MA0108.2	0.00842
MA0111.1	MA0111.1	0.423
MA0112.2	MA0112.2	0.182
MA0113.1	MA0113.1	0.455
MA0114.1	MA0114.1	0.0141
MA0115.1	MA0115.1	0.103
MA0116.1	MA0116.1	0.00706
MA0117.1	MA0117.1	0.485
MA0119.1	MA0119.1	0.546
MA0122.1	MA0122.1	0.962
MA0124.1	MA0124.1	0.731
MA0125.1	MA0125.1	0.767
MA0131.1	MA0131.1	0.417
MA0135.1	MA0135.1	0.199
MA0136.1	MA0136.1	0.0928
MA0137.2	MA0137.2	0.122
MA0138.2	MA0138.2	0.955
MA0139.1	MA0139.1	0.0685
MA0140.1	MA0140.1	3.26892e-39
MA0141.1	MA0141.1	0.00318
MA0142.1	MA0142.1	0.194
MA0143.1	MA0143.1	0.134
MA0144.1	MA0144.1	0.781
MA0145.1	MA0145.1	0.727
MA0146.1	MA0146.1	0.0538
MA0147.1	MA0147.1	2.76705e-5
MA0148.1	MA0148.1	0.357
MA0149.1	MA0149.1	0.0171
MA0150.1	MA0150.1	0.114
MA0152.1	MA0152.1	0.402
MA0153.1	MA0153.1	0.135
MA0154.1	MA0154.1	0.385
MA0155.1	MA0155.1	0.414
MA0156.1	MA0156.1	9.02357e-5
MA0157.1	MA0157.1	0.279
MA0159.1	MA0159.1	0.447
MA0160.1	MA0160.1	0.0393
MA0162.1	MA0162.1	0.246
MA0163.1	MA0163.1	1.36231e-6
MA0164.1	MA0164.1	0.638
MA0258.1	MA0258.1	0.338
MA0259.1	MA0259.1	0.0186

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12336

Novel motif	Logo	P-value
1	1	0.0307
10	10	0.0686
100	100	0.331
101	101	0.568
102	102	0.35
103	103	0.922
104	104	0.643
105	105	0.941
106	106	0.046
107	107	0.017
108	108	0.962
109	109	0.021
11	11	0.182
110	110	0.187
111	111	0.383
112	112	0.869
113	113	0.136
114	114	0.0304
115	115	0.572
116	116	0.508
117	117	0.00819
118	118	0.225
119	119	0.686
12	12	0.903
120	120	0.531
121	121	0.896
122	122	0.0961
123	123	0.915
124	124	0.495
125	125	0.608
126	126	0.17
127	127	0.119
128	128	0.0732
129	129	0.765
13	13	0.00115
130	130	0.034
131	131	0.476
132	132	0.0935
133	133	0.177
134	134	0.893
135	135	0.257
136	136	0.0343
137	137	0.274
138	138	0.583
139	139	0.391
14	14	0.538
140	140	0.016
141	141	0.0166
142	142	0.572
143	143	0.682
144	144	0.64
145	145	0.817
146	146	0.881
147	147	0.614
148	148	0.713
149	149	0.159
15	15	0.509
150	150	0.432
151	151	0.387
152	152	0.128
153	153	0.858
154	154	0.339
155	155	0.17
156	156	0.61
157	157	0.485
158	158	0.979
159	159	0.142
16	16	0.714
160	160	0.979
161	161	0.0366
162	162	0.448
163	163	0.457
164	164	0.512
165	165	0.813
166	166	0.0413
167	167	0.396
168	168	0.572
169	169	0.558
17	17	0.771
18	18	0.941
19	19	0.902
2	2	0.23
20	20	0.0576
21	21	0.305
22	22	0.631
23	23	0.0166
24	24	0.128
25	25	0.332
26	26	0.138
27	27	0.285
28	28	0.445
29	29	0.0202
3	3	0.399
30	30	0.162
31	31	0.481
32	32	0.0525
33	33	0.0404
34	34	0.4
35	35	0.314
36	36	0.0346
37	37	0.222
38	38	0.314
39	39	0.24
4	4	0.0623
40	40	0.217
41	41	0.899
42	42	0.264
43	43	0.735
44	44	0.639
45	45	0.518
46	46	0.435
47	47	0.0282
48	48	0.198
49	49	0.255
5	5	0.982
50	50	0.959
51	51	0.907
52	52	0.0299
53	53	0.893
54	54	0.623
55	55	0.0425
56	56	0.814
57	57	0.544
58	58	0.502
59	59	0.892
6	6	0.289
60	60	0.362
61	61	0.0773
62	62	0.417
63	63	0.412
64	64	0.555
65	65	0.434
66	66	4.49955e-6
67	67	0.612
68	68	0.0829
69	69	0.741
7	7	0.0577
70	70	0.291
71	71	0.0438
72	72	0.288
73	73	0.994
74	74	0.445
75	75	0.00584
76	76	0.738
77	77	0.365
78	78	5.05109e-4
79	79	0.145
8	8	0.495
80	80	0.191
81	81	0.239
82	82	0.895
83	83	0.0775
84	84	0.548
85	85	0.161
86	86	0.709
87	87	0.0664
88	88	0.919
89	89	0.645
9	9	0.524
90	90	0.463
91	91	0.0127
92	92	0.539
93	93	0.78
94	94	0.782
95	95	0.0284
96	96	0.697
97	97	0.343
98	98	0.468
99	99	0.462

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12336

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100664 K-562 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005508
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007857;DRR008729;DRZ000154;DRZ001539;DRZ011504;DRZ012889
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100664
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.36!229.75!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!2.07!115.96!STAT5A;;chr20:56100179..56100208,-!p1@CTCFL!1.99!97.34!CTCFL;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.97!NFE2;;chr17:46703687..46703740,-!p1@HOXB9!1.83!66.12!HOXB9;;chr6:135502501..135502546,+!p1@MYB!1.71!59.41!MYB;;chr8:37963466..37963506,+!p3@ASH2L!1.68!57.56!ASH2L;;chr19:12998003..12998021,-!p1@KLF1!1.68!46.49!KLF1;;chr12:54785074..54785122,-!p2@ZNF385A!1.67!69.31!ZNF385A;;chr9:135854091..135854159,+!p1@GFI1B!1.67!45.98!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.64!42.96!NFE2;;chr5:134369905..134369972,-!p1@PITX1!1.63!63.27!PITX1;;chr12:54689532..54689551,-!p4@NFE2!1.59!38.10!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.24!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!1.50!63.10!DNMT3B;;chr3:128206762..128206781,-!p2@GATA2!1.48!176.55!GATA2;;chr3:128212033..128212051,-!p1@GATA2!1.47!28.36!GATA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.45!247.70!ZNF595;;chr19:13213511..13213545,-!p2@LYL1!1.45!29.20!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.42!29.37!MYB;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.15!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.25!16.61!GATA1;;chr12:54785054..54785072,-!p4@ZNF385A!1.24!18.63!ZNF385A;;chr10:70320074..70320106,+!p1@TET1!1.22!31.55!TET1;;chrX:48645010..48645015,+!p3@GATA1!1.20!14.77!GATA1;;chr17:46622205..46622218,-!p3@HOXB2!1.19!16.61!HOXB2;;chr5:88178983..88179012,-!p1@MEF2C!1.17!105.90!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.15!13.26!MYB;;chr12:54689552..54689574,-!p6@NFE2!1.15!13.26!NFE2;;chr17:46622229..46622257,-!p6@HOXB2!1.14!15.10!HOXB2;;chr17:40469520..40469532,-!p12@STAT3!1.13!12.42!STAT3;;chr19:13213555..13213568,-!p5@LYL1!1.12!12.25!LYL1;;chr20:56100155..56100163,-!p2@CTCFL!1.12!12.08!CTCFL;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.29!NFATC2;;chr1:47695003..47695042,-!p2@TAL1!1.10!11.58!TAL1;;chr12:56415246..56415286,+!p2@IKZF4!1.10!11.58!IKZF4;;chr4:174451370..174451387,-!p1@HAND2!1.09!11.24!HAND2;;chr22:19748231..19748317,+!p1@TBX1!1.08!11.08!TBX1;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.74!TAL1;;chr10:124895472..124895508,+!p1@HMX3!1.07!10.74!HMX3;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.07!10.74!SOHLH2;;chr7:50343634..50343717,+!p2@IKZF1!1.06!10.40!IKZF1;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.96!ETV4;;chr2:200323414..200323455,-!p1@SATB2!1.04!21.31!SATB2;;chr11:32457075..32457095,-!p1@WT1!1.04!10.07!WT1;;chr6:20402102..20402152,+!p1@E2F3!1.02!39.77!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!1.02!25.34!ZNF280B;;chr22:22874610..22874616,-!p1@ZNF280A!1.02!9.40!ZNF280A;;chr17:40469457..40469494,-!p14@STAT3!1.02!9.40!STAT3;;chr19:22235279..22235301,+!p1@ZNF257!1.00!17.12!ZNF257;;chr3:141747459..141747475,-!p1@TFDP2!0.99!74.01!TFDP2;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.66!ZFPM2;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.29!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.56!PITX1;;chr8:145701192..145701241,-!p1@FOXH1!0.98!8.56!FOXH1;;chr9:135854074..135854089,+!p2@GFI1B!0.98!8.56!GFI1B;;chr17:40440177..40440190,+!p6@STAT5A!0.98!8.56!STAT5A;;chr20:42295713..42295738,+!p2@MYBL2!0.97!50.18!MYBL2;;chr8:37963407..37963454,+!p2@ASH2L!0.96!24.84!ASH2L;;chr6:85473156..85473210,-!p2@TBX18!0.96!10.07!TBX18;;chr12:56414795..56414836,+!p4@IKZF4!0.96!8.06!IKZF4;;chr17:46655730..46655791,-!p1@HOXB4!0.95!20.47!HOXB4;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.41!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.92!20.14!HHEX;;chr11:32457103..32457123,-!p3@WT1!0.91!7.05!WT1;;chr2:200322259..200322280,-!p5@SATB2!0.91!7.05!SATB2;;chr17:40469366..40469383,-!p17@STAT3!0.91!7.05!STAT3;;chr17:45928521..45928539,-!p1@SP6!0.91!7.05!SP6;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.05!HOXB6;;chr17:40441330..40441344,+!p9@STAT5A!0.90!6.88!STAT5A;;chr2:145277640..145277771,-!p1@ZEB2!0.89!96.16!ZEB2;;chr17:79881332..79881348,-!p3@MAFG!0.89!10.24!MAFG;;chr6:34204672..34204692,+!p1@HMGA1!0.88!780.20!HMGA1;;chr10:35484053..35484076,+!p1@CREM!0.88!17.29!CREM;;chr11:47400045..47400060,-!p6@SPI1!0.88!6.55!SPI1;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.55!LHX6;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.67!BRCA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.87!6.38!ZBED1;;chr5:88179017..88179046,-!p2@MEF2C!0.86!26.68!MEF2C;;chr2:239148671..239148686,-!p1@HES6!0.86!23.83!HES6;;chr3:138665969..138665993,-!p2@FOXL2!0.86!6.21!FOXL2;;chr6:34204642..34204664,+!p2@HMGA1!0.85!873.34!HMGA1;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.70!NFATC3;;chr3:141747441..141747452,-!p4@TFDP2!0.85!8.73!TFDP2;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.91!NCOA4;;chr7:64363638..64363667,+!p1@ZNF273!0.83!30.88!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.83!27.86!TAL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.83!7.55!ZFPM2;;chr15:76629123..76629151,+!p1@ISL2!0.83!6.38!ISL2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.71!GATA2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.38!HOXB2;;chr19:52074502..52074587,+!p1@ZNF175!0.81!21.15!ZNF175;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!17.96!HIVEP1;;chr11:6947720..6947812,+!p1@ZNF215!0.81!7.22!ZNF215;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.10!NFATC3;;chr12:54694738..54694749,-!p5@NFE2!0.80!5.37!NFE2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.37!PAX9;;chr3:141747950..141748004,-!p7@TFDP2!0.80!5.37!TFDP2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.52!EZH2;;chr17:46703826..46703845,-!p3@HOXB9!0.79!5.20!HOXB9;;chr11:47400078..47400106,-!p1@SPI1!0.79!5.20!SPI1;;chr19:926001..926046,+!p1@ARID3A!0.78!18.63!ARID3A;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.89!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.03!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.78!5.03!HOXB9;;chr2:74229812..74229867,+!p1@TET3!0.77!13.09!TET3;;chr17:46655704..46655718,-!p2@HOXB4!0.77!7.55!HOXB4;;chr8:37963511..37963523,+!p4@ASH2L!0.77!4.87!ASH2L;;chr20:62680984..62680999,-!p1@SOX18!0.76!6.55!SOX18;;chr9:124976154..124976177,-!p5@LHX6!0.76!4.70!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.74!MYBL2;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.08!HOXB2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.75!7.89!ZC3H11A;;chr7:148581327..148581347,-!p2@EZH2!0.74!16.78!EZH2;;chr4:4291861..4291913,-!p1@LYAR!0.73!113.95!LYAR;;chr17:46622114..46622138,-!p4@HOXB2!0.73!7.05!HOXB2;;chr5:133450365..133450444,+!p1@TCF7!0.72!21.48!TCF7;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.20!HOXC9;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.87!ELF1;;chr10:70320041..70320065,+!p2@TET1!0.70!4.03!TET1;;chr9:135854058..135854072,+!p3@GFI1B!0.70!4.03!GFI1B;;chr6:134274354..134274371,+!p1@TBPL1!0.69!117.31!TBPL1;;chr5:138609782..138609826,+!p5@MATR3!0.69!28.36!MATR3;;chr22:20748434..20748455,+!p1@ZNF74!0.69!13.76!ZNF74;;chr19:23941680..23941704,-!p1@ZNF681!0.69!12.59!ZNF681;;chr17:40440446..40440464,+!p5@STAT5A!0.69!3.86!STAT5A;;chr12:54694686..54694697,-!p8@NFE2!0.69!3.86!NFE2;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.86!FOXL2;;chr8:28748099..28748141,+!p2@HMBOX1!0.68!13.26!HMBOX1;;chr1:247171347..247171366,-!p2@ZNF695!0.68!7.38!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.70!POU2F3;;chr1:8877692..8877732,-!p1@RERE!0.67!34.24!RERE;;chr17:41622765..41622821,-!p2@ETV4!0.67!6.04!ETV4;;chr6:20402070..20402082,+!p5@E2F3!0.67!4.36!E2F3;;chr11:47400032..47400043,-!p5@SPI1!0.67!3.69!SPI1;;chr19:926055..926068,+!p2@ARID3A!0.66!8.56!ARID3A;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!8.06!BHLHE40;;chr10:97889464..97889494,+!p3@ZNF518A!0.66!7.22!ZNF518A;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.52!SATB2;;chr3:141748010..141748030,-!p8@TFDP2!0.66!3.52!TFDP2;;chr4:109089095..109089144,-!p6@LEF1!0.66!3.52!LEF1;;chr1:151032860..151032918,+!p1@MLLT11!0.65!47.66!MLLT11;;chr16:88519669..88519726,+!p1@ZFPM1!0.65!36.59!ZFPM1;;chr16:88519743..88519754,+!p2@ZFPM1!0.65!3.86!ZFPM1;;chr19:21264991..21265026,+!p1@ZNF714!0.64!25.84!ZNF714;;chr8:145669791..145669834,-!p1@TONSL!0.64!10.91!TONSL;;chr12:51566562..51566584,-!p2@TFCP2!0.64!10.74!TFCP2;;chr15:76629097..76629120,+!p2@ISL2!0.64!3.86!ISL2;;chr17:46622175..46622186,-!p12@HOXB2!0.64!3.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.64!3.36!IKZF1;;chr10:60145155..60145206,+!p1@TFAM!0.63!170.17!TFAM;;chr7:102985160..102985273,-!p1@DNAJC2!0.63!97.67!DNAJC2;;chr1:78444778..78444800,-!p2@FUBP1!0.63!67.97!FUBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.63!19.47!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.87!MECOM;;chr1:45805872..45805900,+!p2@TOE1!0.62!8.73!TOE1;;chr11:64764435..64764449,-!p1@BATF2!0.62!4.70!BATF2;;chr17:42295777..42295816,-!p7@UBTF!0.62!4.03!UBTF;;chr12:56415287..56415300,+!p5@IKZF4!0.62!3.19!IKZF4;;chr9:124976328..124976372,-!p2@LHX6!0.62!3.19!LHX6;;chr4:4291837..4291859,-!p2@LYAR!0.61!11.75!LYAR;;chr2:70314240..70314256,+!p4@PCBP1!0.61!7.05!PCBP1;;chr19:12203100..12203132,+!p1@ZNF788!0.61!6.88!ZNF788;;chr9:127533582..127533615,-!p1@NR6A1!0.61!4.87!NR6A1;;chr19:59084922..59084947,-!p3@MZF1!0.60!7.55!MZF1;;chr12:3068466..3068495,+!p3@TEAD4!0.60!7.22!TEAD4;;chr1:40367530..40367597,-!p1@MYCL1!0.60!6.04!MYCL1;;chr19:13213465..13213478,-!p7@LYL1!0.60!3.02!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.60!3.02!POU4F1;;chr6:56954867..56954882,+!p2@ZNF451!0.59!9.90!ZNF451;;chr1:226595726..226595737,-!p2@PARP1!0.59!8.06!PARP1;;chr8:145701166..145701187,-!p2@FOXH1!0.59!2.85!FOXH1;;chr2:172949484..172949522,+!p1@DLX1!0.59!2.85!DLX1;;chr11:32457413..32457431,-!p2@WT1!0.59!2.85!WT1;;chr7:64254793..64254813,+!p1@ZNF138!0.58!39.94!ZNF138;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.06!SALL2;;chr19:9695169..9695188,-!p1@ZNF121!0.57!59.24!ZNF121;;chr19:21950362..21950388,-!p1@ZNF100!0.57!30.38!ZNF100;;chr10:51572339..51572376,+!p4@NCOA4!0.57!7.05!NCOA4;;chr17:41623075..41623101,-!p9@ETV4!0.57!3.36!ETV4;;chr17:40441412..40441419,+!p20@STAT5A!0.57!2.69!STAT5A;;chr17:45928443..45928473,-!p2@SP6!0.57!2.69!SP6;;chr7:50344289..50344323,+!p1@IKZF1!0.57!2.69!IKZF1;;chr2:63277948..63277974,+!p1@OTX1!0.57!2.69!OTX1;;chr8:128748470..128748487,+!p1@MYC!0.56!368.87!MYC;;chr22: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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10826-111C7
 |is_a=EFO:0002091;;FF:0000210;;FF:0100664
 |is_obsolete=
+|library_id=CNhs12336
+|library_id_phase_based=2:CNhs12336
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10826
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10826
 |name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12336,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 58: / Line 78: @@
 |rna_weight_ug=69.987
 |sample_age=53
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=K562
@@ Line 74: / Line 95: @@
 |sample_note=
 |sample_sex=female
-|sample_species=
+|sample_species=Human (Homo sapiens)
 |sample_strain=
 |sample_tissue=blood
 |top_motifs=GATA6:3.72843593209;MYB:2.05150464831;ELK1,4_GABP{A,B1}:2.00337734644;STAT5{A,B}:1.55522551783;NFY{A,B,C}:1.50612836929;E2F1..5:1.49453629113;CDX1,2,4:1.44193232442;POU3F1..4:1.31510832556;NRF1:1.2650096368;PBX1:1.16721213806;NR5A1,2:1.14185211949;POU2F1..3:1.11837369834;ZBTB16:1.10686317931;NFIX:1.08720084498;HOXA9_MEIS1:1.06920645625;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06564855296;ZNF143:1.05343792169;YY1:0.902502052986;PITX1..3:0.885759322554;NR6A1:0.87613389778;CRX:0.858137969126;OCT4_SOX2{dimer}:0.760914171561;POU1F1:0.714875543189;STAT1,3:0.697727734479;HOX{A5,B5}:0.657768756582;PAX8:0.643696366911;ADNP_IRX_SIX_ZHX:0.62994016939;HOX{A6,A7,B6,B7}:0.603469860912;AHR_ARNT_ARNT2:0.602036776915;HES1:0.585929735852;ELF1,2,4:0.567865717285;ZNF148:0.566875140907;T:0.563035600516;ESRRA:0.555284510999;FOXQ1:0.550129750287;NFE2:0.53133417055;NANOG:0.499242508865;RBPJ:0.487420771859;SPZ1:0.465823599349;RORA:0.425542392723;NR1H4:0.425419810012;CUX2:0.424537320677;IKZF1:0.395394625608;SOX{8,9,10}:0.391764154609;BREu{core}:0.385185299821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384301258752;SMAD1..7,9:0.361244944666;PAX3,7:0.306438257218;TOPORS:0.291240733509;NKX2-1,4:0.278554296415;PRRX1,2:0.263573481072;AR:0.240062526579;NKX2-3_NKX2-5:0.21494275273;FOXA2:0.203737849929;GFI1:0.200385128783;NANOG{mouse}:0.191868069718;IKZF2:0.181041895926;ARID5B:0.11555894846;NKX3-2:0.10627661182;HOX{A4,D4}:0.0927556514965;ONECUT1,2:0.0838623880675;AIRE:0.081343839072;EVI1:0.071933466462;SNAI1..3:0.0702664866206;HNF4A_NR2F1,2:0.0570793702842;RXRA_VDR{dimer}:0.0550751662106;ALX1:0.026279674034;CREB1:0.021841336828;VSX1,2:-0.00165111493043;HAND1,2:-0.0124269677323;ZEB1:-0.0302476130128;PAX4:-0.0509240804661;bHLH_family:-0.0524790848309;EN1,2:-0.0691294041314;FOXD3:-0.0859405485627;PPARG:-0.0906897550132;MYOD1:-0.0998463096425;TEF:-0.100316105852;ATF4:-0.109038808181;SPIB:-0.123704454539;NKX2-2,8:-0.135729739191;LEF1_TCF7_TCF7L1,2:-0.146864629239;POU5F1:-0.15137335937;FOSL2:-0.163153773237;ZNF384:-0.167479134761;NFE2L2:-0.172339533988;HLF:-0.173140019405;ATF5_CREB3:-0.184332171988;POU6F1:-0.187215563182;NKX6-1,2:-0.201096226706;PAX2:-0.213392519663;PAX6:-0.219753956757;HIF1A:-0.220932577299;SPI1:-0.222366953591;CEBPA,B_DDIT3:-0.231482411384;TFDP1:-0.237316825432;PDX1:-0.242122352769;HNF1A:-0.262207049833;MEF2{A,B,C,D}:-0.266958101487;MAFB:-0.268110934043;FOXN1:-0.303577008491;BACH2:-0.333350395039;RUNX1..3:-0.336585078676;FOXP1:-0.359603558634;FOS_FOS{B,L1}_JUN{B,D}:-0.374415741372;NFKB1_REL_RELA:-0.391336011042;NKX3-1:-0.398363531261;FOX{F1,F2,J1}:-0.406693290177;ETS1,2:-0.415623014718;UFEwm:-0.421415501248;HSF1,2:-0.432276680679;EGR1..3:-0.436657204686;FOXP3:-0.442951851264;STAT2,4,6:-0.448198069317;RFX2..5_RFXANK_RFXAP:-0.453123719218;SP1:-0.45386508029;ZBTB6:-0.461416282855;SOX5:-0.494790867502;RFX1:-0.505960899067;GATA4:-0.521584378986;KLF4:-0.523278170715;FOX{I1,J2}:-0.524448016865;NFE2L1:-0.541103171698;RXR{A,B,G}:-0.549301655715;TLX2:-0.551261894048;XCPE1{core}:-0.55340784593;TGIF1:-0.562287209243;PAX1,9:-0.582115469757;LMO2:-0.599192246871;RREB1:-0.603047470666;FOXM1:-0.624444990116;SOX2:-0.635044998728;SOX17:-0.637656926067;LHX3,4:-0.662079894631;ZFP161:-0.662607996513;TFAP4:-0.667509600149;REST:-0.680367368829;EP300:-0.686077003901;ALX4:-0.687842153998;PATZ1:-0.690167056613;NHLH1,2:-0.69573132286;NFIL3:-0.73490038006;IRF7:-0.780716347854;ATF2:-0.780857818084;ZIC1..3:-0.782435977748;NFATC1..3:-0.784166182473;ZNF238:-0.798443399238;DBP:-0.804943636542;DMAP1_NCOR{1,2}_SMARC:-0.815529600056;JUN:-0.820628922189;GTF2I:-0.830087311839;SREBF1,2:-0.855050924365;TP53:-0.858179748844;SRF:-0.862286479745;XBP1:-0.870094717364;MZF1:-0.874123659575;MED-1{core}:-0.88701992909;BPTF:-0.900575620346;TEAD1:-0.904425947489;GTF2A1,2:-0.960456237002;CDC5L:-0.974150396268;TBP:-1.02468298782;HMGA1,2:-1.02902824019;FOX{D1,D2}:-1.04278691076;ZNF423:-1.09237172274;NR3C1:-1.11965017273;GCM1,2:-1.12384581527;MAZ:-1.13221113439;IRF1,2:-1.13855209931;MYFfamily:-1.17202492289;TFAP2{A,C}:-1.18022028922;ESR1:-1.1807300467;MYBL2:-1.19267128927;HMX1:-1.2103678837;TBX4,5:-1.22308821738;HBP1_HMGB_SSRP1_UBTF:-1.23305473993;EBF1:-1.23708398426;ATF6:-1.26027926943;PRDM1:-1.26605537076;TLX1..3_NFIC{dimer}:-1.27926064008;HIC1:-1.30033484284;PAX5:-1.32468362411;GFI1B:-1.45522043397;TAL1_TCF{3,4,12}:-1.49861527867;MTF1:-1.50695872123;GLI1..3:-1.51655498367;FOXO1,3,4:-1.5199658775;GZF1:-1.53756428251;MTE{core}:-1.56057392297;TFAP2B:-1.72917646693;FOXL1:-1.7602451765;TFCP2:-2.36272046395
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10826-111C7;search_select_hide=table117:FF:10826-111C7
 }}

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FF:10826-111C7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:07, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0