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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005061
|accession_numbers=CAGE;DRX007817;DRR008689;DRZ000114;DRZ001499;DRZ011464;DRZ012849
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.56!363.32!GATA2;;chr12:54694758..54694805,-!p1@NFE2!1.88!90.20!NFE2;;chr18:77155922..77155939,+!p1@NFATC1!1.81!165.93!NFATC1;;chr3:128206762..128206781,-!p2@GATA2!1.72!304.85!GATA2;;chr13:72441315..72441454,-!p1@DACH1!1.70!94.94!DACH1;;chr9:135854091..135854159,+!p1@GFI1B!1.68!46.77!GFI1B;;chr7:137620684..137620711,-!p4@CREB3L2!1.61!40.09!CREB3L2;;chr6:135502501..135502546,+!p1@MYB!1.60!46.49!MYB;;chr17:40441354..40441410,+!p2@STAT5A!1.60!38.42!STAT5A;;chr12:54694807..54694832,-!p3@NFE2!1.59!37.86!NFE2;;chr7:137620650..137620677,-!p3@CREB3L2!1.56!35.64!CREB3L2;;chr6:135502408..135502459,+!p2@MYB!1.54!39.26!MYB;;chrX:48650688..48650735,+!p5@GATA1!1.48!28.95!GATA1;;chr19:46367576..46367592,+!p1@FOXA3!1.43!25.61!FOXA3;;chr19:13213511..13213545,-!p2@LYL1!1.40!26.45!LYL1;;chr12:54694653..54694672,-!p2@NFE2!1.25!16.70!NFE2;;chr17:40440177..40440190,+!p6@STAT5A!1.24!16.43!STAT5A;;chr11:44331576..44331650,-!p1@ALX4!1.23!15.87!ALX4;;chrY:21906594..21906622,-!p1@KDM5D!1.22!15.59!KDM5D;;chr20:61051039..61051057,-!p1@GATA5!1.16!13.36!GATA5;;chr9:20382446..20382493,-!p4@MLLT3!1.14!12.81!MLLT3;;chrX:131624056..131624069,-!p2@MBNL3!1.13!16.98!MBNL3;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.43!PRDM8;;chr11:44331679..44331702,-!p2@ALX4!1.13!12.53!ALX4;;chr12:54689532..54689551,-!p4@NFE2!1.11!11.97!NFE2;;chr9:127269661..127269719,-!p1@NR5A1!1.11!11.97!NR5A1;;chr21:36421535..36421610,-!p2@RUNX1!1.10!41.48!RUNX1;;chr16:68119324..68119364,+!p1@NFATC3!1.09!50.67!NFATC3;;chr1:25291475..25291511,-!p2@RUNX3!1.07!10.86!RUNX3;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.03!ZBTB16;;chr7:50343634..50343717,+!p2@IKZF1!1.04!10.02!IKZF1;;chr8:37963466..37963506,+!p3@ASH2L!1.03!12.25!ASH2L;;chr10:124895472..124895508,+!p1@HMX3!1.03!9.74!HMX3;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.74!DACH1;;chr11:32457103..32457123,-!p3@WT1!1.01!9.19!WT1;;chr13:79177703..79177729,-!p2@POU4F1!1.01!9.19!POU4F1;;chr8:80679993..80680011,-!p1@HEY1!0.99!12.81!HEY1;;chr9:135853402..135853417,+!p4@GFI1B!0.98!8.63!GFI1B;;chr2:239148671..239148686,-!p1@HES6!0.97!31.18!HES6;;chr1:158978768..158978800,+!p8@IFI16!0.97!8.35!IFI16;;chr6:20402102..20402152,+!p1@E2F3!0.96!34.24!E2F3;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.64!ZBTB16;;chr10:94449703..94449718,+!p1@HHEX!0.95!31.18!HHEX;;chr13:79177674..79177701,-!p1@POU4F1!0.94!7.80!POU4F1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr10:35484053..35484076,+!p1@CREM!0.93!19.21!CREM;;chr11:32457075..32457095,-!p1@WT1!0.93!7.52!WT1;;chr2:219849897..219849928,-!p2@FEV!0.93!7.52!FEV;;chr6:135502472..135502489,+!p3@MYB!0.92!7.24!MYB;;chr17:41277372..41277418,-!p1@BRCA1!0.89!25.89!BRCA1;;chr11:63684602..63684664,-!p1@RCOR2!0.88!13.36!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.68!ETV4;;chr6:28304275..28304282,-!p7@ZNF323!0.87!6.40!ZNF323;;chr1:3569072..3569093,+!p1@TP73!0.87!6.40!TP73;;chr8:22550982..22550999,-!p1@EGR3!0.86!18.37!EGR3;;chr16:88519743..88519754,+!p2@ZFPM1!0.85!6.68!ZFPM1;;chr3:69788576..69788648,+!p1@MITF!0.84!33.13!MITF;;chr5:137804405..137804444,+!p3@EGR1!0.84!7.24!EGR1;;chr20:42295745..42295765,+!p1@MYBL2!0.83!99.95!MYBL2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.83!58.47!ZNF595;;chr16:68118689..68118733,+!p3@NFATC3!0.83!15.31!NFATC3;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.35!SATB2;;chr9:135854074..135854089,+!p2@GFI1B!0.82!5.57!GFI1B;;chr19:13213662..13213686,-!p1@LYL1!0.80!8.07!LYL1;;chr6:126070769..126070801,+!p1@HEY2!0.80!6.12!HEY2;;chr1:47697881..47697910,-!p4@TAL1!0.80!5.29!TAL1;;chr5:88178983..88179012,-!p1@MEF2C!0.79!43.15!MEF2C;;chr16:29818160..29818188,+!p6@MAZ!0.78!25.61!MAZ;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.59!TONSL;;chr1:45805872..45805900,+!p2@TOE1!0.78!13.09!TOE1;;chr2:200323414..200323455,-!p1@SATB2!0.77!11.14!SATB2;;chr7:50344289..50344323,+!p1@IKZF1!0.76!4.73!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.73!IKZF1;;chr11:128457446..128457461,-!p4@ETS1!0.76!4.73!ETS1;;chr17:40440446..40440464,+!p5@STAT5A!0.76!4.73!STAT5A;;chr19:12998003..12998021,-!p1@KLF1!0.76!4.73!KLF1;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.35!MYBL2;;chr17:41622925..41622976,-!p3@ETV4!0.75!7.24!ETV4;;chr19:13213555..13213568,-!p5@LYL1!0.74!4.45!LYL1;;chr1:47691303..47691319,-!p5@TAL1!0.74!4.45!TAL1;;chr3:141747459..141747475,-!p1@TFDP2!0.73!40.37!TFDP2;;chr7:148581360..148581425,-!p1@EZH2!0.73!23.94!EZH2;;chr20:31350184..31350200,+!p1@DNMT3B!0.73!9.74!DNMT3B;;chr1:158985493..158985535,+!p4@IFI16!0.73!6.96!IFI16;;chr12:54785074..54785122,-!p2@ZNF385A!0.72!6.96!ZNF385A;;chr2:70314240..70314256,+!p4@PCBP1!0.71!9.19!PCBP1;;chrX:70316005..70316034,+!p2@FOXO4!0.71!8.07!FOXO4;;chrX:84499081..84499115,+!p2@ZNF711!0.71!6.40!ZNF711;;chr21:36260980..36261011,-!p1@RUNX1!0.70!133.36!RUNX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.70!52.34!PLAGL1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.70!20.32!TAL1;;chr2:74229812..74229867,+!p1@TET3!0.70!11.14!TET3;;chr19:12203100..12203132,+!p1@ZNF788!0.69!8.63!ZNF788;;chr11:19262421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|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.56!363.32!GATA2;;chr12:54694758..54694805,-!p1@NFE2!1.88!90.20!NFE2;;chr18:77155922..77155939,+!p1@NFATC1!1.81!165.93!NFATC1;;chr3:128206762..128206781,-!p2@GATA2!1.72!304.85!GATA2;;chr13:72441315..72441454,-!p1@DACH1!1.70!94.94!DACH1;;chr9:135854091..135854159,+!p1@GFI1B!1.68!46.77!GFI1B;;chr7:137620684..137620711,-!p4@CREB3L2!1.61!40.09!CREB3L2;;chr6:135502501..135502546,+!p1@MYB!1.60!46.49!MYB;;chr17:40441354..40441410,+!p2@STAT5A!1.60!38.42!STAT5A;;chr12:54694807..54694832,-!p3@NFE2!1.59!37.86!NFE2;;chr7:137620650..137620677,-!p3@CREB3L2!1.56!35.64!CREB3L2;;chr6:135502408..135502459,+!p2@MYB!1.54!39.26!MYB;;chrX:48650688..48650735,+!p5@GATA1!1.48!28.95!GATA1;;chr19:46367576..46367592,+!p1@FOXA3!1.43!25.61!FOXA3;;chr19:13213511..13213545,-!p2@LYL1!1.40!26.45!LYL1;;chr12:54694653..54694672,-!p2@NFE2!1.25!16.70!NFE2;;chr17:40440177..40440190,+!p6@STAT5A!1.24!16.43!STAT5A;;chr11:44331576..44331650,-!p1@ALX4!1.23!15.87!ALX4;;chrY:21906594..21906622,-!p1@KDM5D!1.22!15.59!KDM5D;;chr20:61051039..61051057,-!p1@GATA5!1.16!13.36!GATA5;;chr9:20382446..20382493,-!p4@MLLT3!1.14!12.81!MLLT3;;chrX:131624056..131624069,-!p2@MBNL3!1.13!16.98!MBNL3;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.43!PRDM8;;chr11:44331679..44331702,-!p2@ALX4!1.13!12.53!ALX4;;chr12:54689532..54689551,-!p4@NFE2!1.11!11.97!NFE2;;chr9:127269661..127269719,-!p1@NR5A1!1.11!11.97!NR5A1;;chr21:36421535..36421610,-!p2@RUNX1!1.10!41.48!RUNX1;;chr16:68119324..68119364,+!p1@NFATC3!1.09!50.67!NFATC3;;chr1:25291475..25291511,-!p2@RUNX3!1.07!10.86!RUNX3;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.03!ZBTB16;;chr7:50343634..50343717,+!p2@IKZF1!1.04!10.02!IKZF1;;chr8:37963466..37963506,+!p3@ASH2L!1.03!12.25!ASH2L;;chr10:124895472..124895508,+!p1@HMX3!1.03!9.74!HMX3;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.74!DACH1;;chr11:32457103..32457123,-!p3@WT1!1.01!9.19!WT1;;chr13:79177703..79177729,-!p2@POU4F1!1.01!9.19!POU4F1;;chr8:80679993..80680011,-!p1@HEY1!0.99!12.81!HEY1;;chr9:135853402..135853417,+!p4@GFI1B!0.98!8.63!GFI1B;;chr2:239148671..239148686,-!p1@HES6!0.97!31.18!HES6;;chr1:158978768..158978800,+!p8@IFI16!0.97!8.35!IFI16;;chr6:20402102..20402152,+!p1@E2F3!0.96!34.24!E2F3;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.64!ZBTB16;;chr10:94449703..94449718,+!p1@HHEX!0.95!31.18!HHEX;;chr13:79177674..79177701,-!p1@POU4F1!0.94!7.80!POU4F1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr10:35484053..35484076,+!p1@CREM!0.93!19.21!CREM;;chr11:32457075..32457095,-!p1@WT1!0.93!7.52!WT1;;chr2:219849897..219849928,-!p2@FEV!0.93!7.52!FEV;;chr6:135502472..135502489,+!p3@MYB!0.92!7.24!MYB;;chr17:41277372..41277418,-!p1@BRCA1!0.89!25.89!BRCA1;;chr11:63684602..63684664,-!p1@RCOR2!0.88!13.36!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.68!ETV4;;chr6:28304275..28304282,-!p7@ZNF323!0.87!6.40!ZNF323;;chr1:3569072..3569093,+!p1@TP73!0.87!6.40!TP73;;chr8:22550982..22550999,-!p1@EGR3!0.86!18.37!EGR3;;chr16:88519743..88519754,+!p2@ZFPM1!0.85!6.68!ZFPM1;;chr3:69788576..69788648,+!p1@MITF!0.84!33.13!MITF;;chr5:137804405..137804444,+!p3@EGR1!0.84!7.24!EGR1;;chr20:42295745..42295765,+!p1@MYBL2!0.83!99.95!MYBL2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.83!58.47!ZNF595;;chr16:68118689..68118733,+!p3@NFATC3!0.83!15.31!NFATC3;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.35!SATB2;;chr9:135854074..135854089,+!p2@GFI1B!0.82!5.57!GFI1B;;chr19:13213662..13213686,-!p1@LYL1!0.80!8.07!LYL1;;chr6:126070769..126070801,+!p1@HEY2!0.80!6.12!HEY2;;chr1:47697881..47697910,-!p4@TAL1!0.80!5.29!TAL1;;chr5:88178983..88179012,-!p1@MEF2C!0.79!43.15!MEF2C;;chr16:29818160..29818188,+!p6@MAZ!0.78!25.61!MAZ;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.59!TONSL;;chr1:45805872..45805900,+!p2@TOE1!0.78!13.09!TOE1;;chr2:200323414..200323455,-!p1@SATB2!0.77!11.14!SATB2;;chr7:50344289..50344323,+!p1@IKZF1!0.76!4.73!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.73!IKZF1;;chr11:128457446..128457461,-!p4@ETS1!0.76!4.73!ETS1;;chr17:40440446..40440464,+!p5@STAT5A!0.76!4.73!STAT5A;;chr19:12998003..12998021,-!p1@KLF1!0.76!4.73!KLF1;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.35!MYBL2;;chr17:41622925..41622976,-!p3@ETV4!0.75!7.24!ETV4;;chr19:13213555..13213568,-!p5@LYL1!0.74!4.45!LYL1;;chr1:47691303..47691319,-!p5@TAL1!0.74!4.45!TAL1;;chr3:141747459..141747475,-!p1@TFDP2!0.73!40.37!TFDP2;;chr7:148581360..148581425,-!p1@EZH2!0.73!23.94!EZH2;;chr20:31350184..31350200,+!p1@DNMT3B!0.73!9.74!DNMT3B;;chr1:158985493..158985535,+!p4@IFI16!0.73!6.96!IFI16;;chr12:54785074..54785122,-!p2@ZNF385A!0.72!6.96!ZNF385A;;chr2:70314240..70314256,+!p4@PCBP1!0.71!9.19!PCBP1;;chrX:70316005..70316034,+!p2@FOXO4!0.71!8.07!FOXO4;;chrX:84499081..84499115,+!p2@ZNF711!0.71!6.40!ZNF711;;chr21:36260980..36261011,-!p1@RUNX1!0.70!133.36!RUNX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.70!52.34!PLAGL1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.70!20.32!TAL1;;chr2:74229812..74229867,+!p1@TET3!0.70!11.14!TET3;;chr19:12203100..12203132,+!p1@ZNF788!0.69!8.63!ZNF788;;chr11:19262421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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aEEB.CNhs13059.10835-111D7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aEEB.CNhs13059.10835-111D7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aEEB.CNhs13059.10835-111D7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aEEB.CNhs13059.10835-111D7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aEEB.CNhs13059.10835-111D7.hg38.nobarcode.ctss.bed.gz
|id=FF:10835-111D7
|id=FF:10835-111D7
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_obsolete=
|is_obsolete=
|library_id=CNhs13059
|library_id_phase_based=2:CNhs13059
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10835
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10835
|name=acute myeloid leukemia (FAB M6) cell line:EEB
|name=acute myeloid leukemia (FAB M6) cell line:EEB
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13059,LSID1000,release012,COMPLETED
|profile_hcage=CNhs13059,LSID1000,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|sample_cell_line=EEB
Line 83: Line 100:
|top_motifs=GATA6:2.92175110642;NR5A1,2:2.58656873144;PPARG:2.3416045645;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.03308540285;ELK1,4_GABP{A,B1}:2.02079309428;E2F1..5:1.82705251336;MYB:1.69098769565;POU3F1..4:1.42931040574;ZNF143:1.12789128869;PAX8:1.11685843724;NRF1:1.08499081552;NFY{A,B,C}:1.05873561453;BREu{core}:1.03930734286;ELF1,2,4:0.869973186403;SOX{8,9,10}:0.833372092464;NFE2:0.819070081919;YY1:0.79910319268;POU2F1..3:0.787711455109;CRX:0.765563709131;HOXA9_MEIS1:0.72814997546;PBX1:0.725488578625;STAT5{A,B}:0.72104631617;CUX2:0.707617690731;ZBTB16:0.630428889973;GFI1:0.49926453252;NKX2-3_NKX2-5:0.473430746478;ARID5B:0.473046957105;ALX1:0.441838724088;RORA:0.432668964408;EN1,2:0.383154115417;NKX2-1,4:0.363744503181;PRRX1,2:0.359843860287;NANOG:0.348486113999;NANOG{mouse}:0.347993597087;AR:0.318004022688;NKX3-2:0.292950098994;PAX2:0.277777155492;HOX{A6,A7,B6,B7}:0.272285226446;POU6F1:0.270817762847;TFAP4:0.247126439018;ZNF148:0.240089141012;HES1:0.231028412523;OCT4_SOX2{dimer}:0.213290501921;ONECUT1,2:0.18680623414;NFE2L2:0.175961823857;PAX6:0.152958084224;AHR_ARNT_ARNT2:0.151851049063;RUNX1..3:0.139062511231;ATF5_CREB3:0.123112018992;HOX{A5,B5}:0.105153058905;HNF4A_NR2F1,2:0.0877713290021;CREB1:0.0709181238953;bHLH_family:0.0489494202225;NR6A1:0.0458649671523;FOXD3:0.0263549850617;IKZF2:0.0159080163857;ESRRA:0.0150456201528;TFDP1:0.00113487906585;HBP1_HMGB_SSRP1_UBTF:-0.00716849902804;TEF:-0.0251031351942;POU1F1:-0.0262068145126;SPI1:-0.032794163893;BACH2:-0.0607781066762;FOSL2:-0.0687367879719;NFE2L1:-0.0966585489871;SPIB:-0.0974201867008;TLX2:-0.103401438895;RBPJ:-0.110488546135;SREBF1,2:-0.116416308372;AIRE:-0.123936875788;MEF2{A,B,C,D}:-0.13160664967;HOX{A4,D4}:-0.150218994225;FOXM1:-0.153676156172;SMAD1..7,9:-0.172616056394;SNAI1..3:-0.189367419718;TOPORS:-0.195441161075;SOX5:-0.201586018529;ETS1,2:-0.204208059022;NFKB1_REL_RELA:-0.215200395813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.221606538051;LEF1_TCF7_TCF7L1,2:-0.225715906234;MAFB:-0.241523558381;EGR1..3:-0.243884264509;NKX3-1:-0.244310578434;FOXA2:-0.253075593764;SOX17:-0.261860930262;HNF1A:-0.272243662154;CDX1,2,4:-0.282497794183;ZEB1:-0.285397446594;REST:-0.287567653312;FOS_FOS{B,L1}_JUN{B,D}:-0.28924555045;RFX1:-0.300749578298;PITX1..3:-0.316397892828;BPTF:-0.342373817765;PAX3,7:-0.345439362699;NKX6-1,2:-0.366340771283;FOX{F1,F2,J1}:-0.374868175863;VSX1,2:-0.376524815975;FOXQ1:-0.376741950356;NFIX:-0.403509640302;HAND1,2:-0.408062198214;PAX1,9:-0.424829857783;HLF:-0.43043147474;ATF4:-0.43233861133;KLF4:-0.434291619313;EP300:-0.437292360702;ZFP161:-0.454491078044;ADNP_IRX_SIX_ZHX:-0.465347896968;GATA4:-0.466974652131;NHLH1,2:-0.468355510001;NKX2-2,8:-0.469187453059;FOX{I1,J2}:-0.474701961631;EVI1:-0.483415504029;STAT1,3:-0.494837324439;FOXN1:-0.498484933646;GTF2A1,2:-0.504673904989;RFX2..5_RFXANK_RFXAP:-0.514168254346;MYOD1:-0.516899188986;FOXP1:-0.529100121467;NR1H4:-0.536724250334;PAX5:-0.545667953087;UFEwm:-0.546683706438;PRDM1:-0.551184106837;FOXP3:-0.557931005177;NR3C1:-0.565458822729;ZIC1..3:-0.574044705081;IRF1,2:-0.604237161164;TBP:-0.611031835355;GCM1,2:-0.626330826564;IRF7:-0.629653207089;DMAP1_NCOR{1,2}_SMARC:-0.630471227416;ZNF238:-0.635535855398;POU5F1:-0.652324792234;ZNF384:-0.666467535323;PAX4:-0.680341514519;CEBPA,B_DDIT3:-0.68345781834;DBP:-0.744206367134;FOX{D1,D2}:-0.754663571946;HMX1:-0.772011820987;TGIF1:-0.778793417517;RXRA_VDR{dimer}:-0.809095232912;MED-1{core}:-0.830483512607;GTF2I:-0.858418288814;ZBTB6:-0.858457933593;NFIL3:-0.858833703283;TP53:-0.8794951201;SRF:-0.908026079314;SPZ1:-0.911134777386;RREB1:-0.918573853736;NFATC1..3:-0.91891589082;FOXL1:-0.953554157636;ATF2:-0.957043100962;JUN:-0.962114447481;LMO2:-0.963655496294;TBX4,5:-0.966794995633;ATF6:-0.966999803407;STAT2,4,6:-0.976488262896;TEAD1:-0.976610841471;MTF1:-0.981215254442;T:-0.98161255402;IKZF1:-1.01460773841;ESR1:-1.04245771581;MAZ:-1.0476040887;CDC5L:-1.06121262071;PATZ1:-1.07247577631;MYBL2:-1.09565963735;MYFfamily:-1.09699657099;HMGA1,2:-1.13659535039;SOX2:-1.13801775913;LHX3,4:-1.1645328978;RXR{A,B,G}:-1.20928146866;GZF1:-1.21523333666;SP1:-1.24711057647;MZF1:-1.26686396405;XCPE1{core}:-1.27814329804;HIC1:-1.27988052143;XBP1:-1.2851701497;HIF1A:-1.30982488661;TLX1..3_NFIC{dimer}:-1.31102003605;GFI1B:-1.33637790891;ALX4:-1.34250062169;PDX1:-1.35441106775;HSF1,2:-1.35902968527;TFAP2B:-1.45650631907;GLI1..3:-1.51189960417;TAL1_TCF{3,4,12}:-1.57244948821;FOXO1,3,4:-1.59584573288;ZNF423:-1.61609133994;EBF1:-1.62526195005;TFAP2{A,C}:-1.64203934401;MTE{core}:-1.87029774926;TFCP2:-1.88181826841
|top_motifs=GATA6:2.92175110642;NR5A1,2:2.58656873144;PPARG:2.3416045645;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.03308540285;ELK1,4_GABP{A,B1}:2.02079309428;E2F1..5:1.82705251336;MYB:1.69098769565;POU3F1..4:1.42931040574;ZNF143:1.12789128869;PAX8:1.11685843724;NRF1:1.08499081552;NFY{A,B,C}:1.05873561453;BREu{core}:1.03930734286;ELF1,2,4:0.869973186403;SOX{8,9,10}:0.833372092464;NFE2:0.819070081919;YY1:0.79910319268;POU2F1..3:0.787711455109;CRX:0.765563709131;HOXA9_MEIS1:0.72814997546;PBX1:0.725488578625;STAT5{A,B}:0.72104631617;CUX2:0.707617690731;ZBTB16:0.630428889973;GFI1:0.49926453252;NKX2-3_NKX2-5:0.473430746478;ARID5B:0.473046957105;ALX1:0.441838724088;RORA:0.432668964408;EN1,2:0.383154115417;NKX2-1,4:0.363744503181;PRRX1,2:0.359843860287;NANOG:0.348486113999;NANOG{mouse}:0.347993597087;AR:0.318004022688;NKX3-2:0.292950098994;PAX2:0.277777155492;HOX{A6,A7,B6,B7}:0.272285226446;POU6F1:0.270817762847;TFAP4:0.247126439018;ZNF148:0.240089141012;HES1:0.231028412523;OCT4_SOX2{dimer}:0.213290501921;ONECUT1,2:0.18680623414;NFE2L2:0.175961823857;PAX6:0.152958084224;AHR_ARNT_ARNT2:0.151851049063;RUNX1..3:0.139062511231;ATF5_CREB3:0.123112018992;HOX{A5,B5}:0.105153058905;HNF4A_NR2F1,2:0.0877713290021;CREB1:0.0709181238953;bHLH_family:0.0489494202225;NR6A1:0.0458649671523;FOXD3:0.0263549850617;IKZF2:0.0159080163857;ESRRA:0.0150456201528;TFDP1:0.00113487906585;HBP1_HMGB_SSRP1_UBTF:-0.00716849902804;TEF:-0.0251031351942;POU1F1:-0.0262068145126;SPI1:-0.032794163893;BACH2:-0.0607781066762;FOSL2:-0.0687367879719;NFE2L1:-0.0966585489871;SPIB:-0.0974201867008;TLX2:-0.103401438895;RBPJ:-0.110488546135;SREBF1,2:-0.116416308372;AIRE:-0.123936875788;MEF2{A,B,C,D}:-0.13160664967;HOX{A4,D4}:-0.150218994225;FOXM1:-0.153676156172;SMAD1..7,9:-0.172616056394;SNAI1..3:-0.189367419718;TOPORS:-0.195441161075;SOX5:-0.201586018529;ETS1,2:-0.204208059022;NFKB1_REL_RELA:-0.215200395813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.221606538051;LEF1_TCF7_TCF7L1,2:-0.225715906234;MAFB:-0.241523558381;EGR1..3:-0.243884264509;NKX3-1:-0.244310578434;FOXA2:-0.253075593764;SOX17:-0.261860930262;HNF1A:-0.272243662154;CDX1,2,4:-0.282497794183;ZEB1:-0.285397446594;REST:-0.287567653312;FOS_FOS{B,L1}_JUN{B,D}:-0.28924555045;RFX1:-0.300749578298;PITX1..3:-0.316397892828;BPTF:-0.342373817765;PAX3,7:-0.345439362699;NKX6-1,2:-0.366340771283;FOX{F1,F2,J1}:-0.374868175863;VSX1,2:-0.376524815975;FOXQ1:-0.376741950356;NFIX:-0.403509640302;HAND1,2:-0.408062198214;PAX1,9:-0.424829857783;HLF:-0.43043147474;ATF4:-0.43233861133;KLF4:-0.434291619313;EP300:-0.437292360702;ZFP161:-0.454491078044;ADNP_IRX_SIX_ZHX:-0.465347896968;GATA4:-0.466974652131;NHLH1,2:-0.468355510001;NKX2-2,8:-0.469187453059;FOX{I1,J2}:-0.474701961631;EVI1:-0.483415504029;STAT1,3:-0.494837324439;FOXN1:-0.498484933646;GTF2A1,2:-0.504673904989;RFX2..5_RFXANK_RFXAP:-0.514168254346;MYOD1:-0.516899188986;FOXP1:-0.529100121467;NR1H4:-0.536724250334;PAX5:-0.545667953087;UFEwm:-0.546683706438;PRDM1:-0.551184106837;FOXP3:-0.557931005177;NR3C1:-0.565458822729;ZIC1..3:-0.574044705081;IRF1,2:-0.604237161164;TBP:-0.611031835355;GCM1,2:-0.626330826564;IRF7:-0.629653207089;DMAP1_NCOR{1,2}_SMARC:-0.630471227416;ZNF238:-0.635535855398;POU5F1:-0.652324792234;ZNF384:-0.666467535323;PAX4:-0.680341514519;CEBPA,B_DDIT3:-0.68345781834;DBP:-0.744206367134;FOX{D1,D2}:-0.754663571946;HMX1:-0.772011820987;TGIF1:-0.778793417517;RXRA_VDR{dimer}:-0.809095232912;MED-1{core}:-0.830483512607;GTF2I:-0.858418288814;ZBTB6:-0.858457933593;NFIL3:-0.858833703283;TP53:-0.8794951201;SRF:-0.908026079314;SPZ1:-0.911134777386;RREB1:-0.918573853736;NFATC1..3:-0.91891589082;FOXL1:-0.953554157636;ATF2:-0.957043100962;JUN:-0.962114447481;LMO2:-0.963655496294;TBX4,5:-0.966794995633;ATF6:-0.966999803407;STAT2,4,6:-0.976488262896;TEAD1:-0.976610841471;MTF1:-0.981215254442;T:-0.98161255402;IKZF1:-1.01460773841;ESR1:-1.04245771581;MAZ:-1.0476040887;CDC5L:-1.06121262071;PATZ1:-1.07247577631;MYBL2:-1.09565963735;MYFfamily:-1.09699657099;HMGA1,2:-1.13659535039;SOX2:-1.13801775913;LHX3,4:-1.1645328978;RXR{A,B,G}:-1.20928146866;GZF1:-1.21523333666;SP1:-1.24711057647;MZF1:-1.26686396405;XCPE1{core}:-1.27814329804;HIC1:-1.27988052143;XBP1:-1.2851701497;HIF1A:-1.30982488661;TLX1..3_NFIC{dimer}:-1.31102003605;GFI1B:-1.33637790891;ALX4:-1.34250062169;PDX1:-1.35441106775;HSF1,2:-1.35902968527;TFAP2B:-1.45650631907;GLI1..3:-1.51189960417;TAL1_TCF{3,4,12}:-1.57244948821;FOXO1,3,4:-1.59584573288;ZNF423:-1.61609133994;EBF1:-1.62526195005;TFAP2{A,C}:-1.64203934401;MTE{core}:-1.87029774926;TFCP2:-1.88181826841
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10835-111D7;search_select_hide=table117:FF:10835-111D7
}}
}}

Latest revision as of 15:08, 3 June 2020

Name:acute myeloid leukemia (FAB M6) cell line:EEB
Species:Human (Homo sapiens)
Library ID:CNhs13059
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age49
cell typeerythroblast
cell lineEEB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005061
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13059 CAGE DRX007817 DRR008689
Accession ID Hg19

Library idBAMCTSS
CNhs13059 DRZ000114 DRZ001499
Accession ID Hg38

Library idBAMCTSS
CNhs13059 DRZ011464 DRZ012849
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.643
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-3.198666e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.149
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0677
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0145
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.854
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast1.22
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.666
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0.107
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13059

Jaspar motifP-value
MA0002.20.06
MA0003.10.813
MA0004.10.181
MA0006.10.254
MA0007.10.999
MA0009.10.98
MA0014.10.866
MA0017.10.1
MA0018.20.613
MA0019.10.719
MA0024.14.75225e-9
MA0025.10.37
MA0027.10.895
MA0028.11.01886e-11
MA0029.10.00674
MA0030.10.85
MA0031.10.82
MA0035.22.03638e-19
MA0038.10.797
MA0039.20.743
MA0040.10.0481
MA0041.10.846
MA0042.10.546
MA0043.10.207
MA0046.10.535
MA0047.20.592
MA0048.10.791
MA0050.10.0236
MA0051.10.13
MA0052.10.504
MA0055.10.00388
MA0057.10.921
MA0058.10.051
MA0059.10.00864
MA0060.14.8696e-12
MA0061.10.739
MA0062.23.03952e-17
MA0065.20.0122
MA0066.10.751
MA0067.10.39
MA0068.10.0024
MA0069.10.159
MA0070.10.0386
MA0071.10.00774
MA0072.10.251
MA0073.10.838
MA0074.10.101
MA0076.11.31641e-16
MA0077.10.0458
MA0078.10.173
MA0079.20.323
MA0080.20.572
MA0081.10.148
MA0083.10.633
MA0084.10.141
MA0087.10.259
MA0088.15.09398e-4
MA0090.10.00172
MA0091.10.646
MA0092.10.854
MA0093.10.107
MA0099.20.00197
MA0100.10.0208
MA0101.10.989
MA0102.25.48705e-5
MA0103.10.965
MA0104.20.00256
MA0105.10.127
MA0106.10.201
MA0107.10.21
MA0108.20.448
MA0111.10.447
MA0112.20.394
MA0113.10.362
MA0114.10.0211
MA0115.10.00536
MA0116.10.0191
MA0117.10.808
MA0119.10.942
MA0122.10.387
MA0124.10.812
MA0125.10.921
MA0131.10.256
MA0135.10.459
MA0136.10.00204
MA0137.20.397
MA0138.20.715
MA0139.10.0805
MA0140.11.98708e-25
MA0141.11.2981e-7
MA0142.10.539
MA0143.10.0169
MA0144.10.443
MA0145.10.636
MA0146.10.281
MA0147.12.82759e-4
MA0148.10.665
MA0149.10.0162
MA0150.10.00296
MA0152.10.463
MA0153.10.265
MA0154.10.477
MA0155.10.795
MA0156.12.72907e-7
MA0157.10.835
MA0159.10.883
MA0160.19.53322e-4
MA0162.10.0417
MA0163.11.27875e-5
MA0164.10.706
MA0258.10.416
MA0259.10.0139



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13059

Novel motifP-value
10.0588
100.0243
1000.518
1010.735
1020.332
1030.584
1040.829
1050.722
1060.0585
1070.0367
1080.405
1090.0322
110.178
1100.338
1110.123
1120.995
1130.0858
1140.15
1150.452
1160.139
1170.0174
1180.309
1190.352
120.324
1200.514
1210.769
1220.114
1230.142
1240.389
1250.326
1260.756
1270.24
1280.139
1290.227
130.0621
1300.17
1310.522
1320.138
1330.958
1340.689
1350.821
1360.0972
1370.23
1380.905
1390.222
140.922
1400.773
1410.204
1420.878
1430.78
1440.552
1450.807
1460.954
1470.117
1480.26
1490.0632
150.0374
1500.906
1510.628
1520.0196
1530.499
1540.42
1550.054
1560.119
1570.685
1580.658
1590.141
160.995
1600.947
1610.122
1620.671
1630.632
1640.85
1650.829
1660.0727
1670.335
1680.216
1690.913
170.838
180.966
190.743
20.261
200.221
210.415
220.894
230.0816
240.0269
250.0908
260.0505
270.588
280.411
290.0705
30.537
300.0817
310.626
320.166
330.0429
340.741
350.273
360.0214
370.618
380.299
390.116
40.067
400.411
410.924
420.325
430.819
440.514
450.358
460.518
470.0442
480.267
490.391
50.922
500.375
510.769
520.048
530.923
540.441
550.477
560.658
570.253
580.275
590.811
60.254
600.561
610.242
620.315
630.537
640.622
650.551
661.16577e-5
670.651
680.501
690.658
70.0394
700.34
710.222
720.573
730.726
740.701
750.0086
760.215
770.17
780.0161
790.0685
80.422
800.181
810.47
820.77
830.155
840.22
850.0556
860.605
870.076
880.575
890.467
90.615
900.176
910.15
920.438
930.551
940.902
950.0255
960.438
970.962
980.146
990.288



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13059


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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