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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00004916
|accession_numbers=CAGE;DRX007985;DRR008857;DRZ000282;DRZ001667
|accession_numbers=CAGE;DRX007985;DRR008857;DRZ000282;DRZ001667;DRZ011632;DRZ013017
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Line 41: Line 41:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/plasma%2520cell%2520leukemia%2520cell%2520line%253aARH-77.CNhs12807.10840-111E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/plasma%2520cell%2520leukemia%2520cell%2520line%253aARH-77.CNhs12807.10840-111E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/plasma%2520cell%2520leukemia%2520cell%2520line%253aARH-77.CNhs12807.10840-111E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/plasma%2520cell%2520leukemia%2520cell%2520line%253aARH-77.CNhs12807.10840-111E3.hg38.nobarcode.ctss.bed.gz
|id=FF:10840-111E3
|id=FF:10840-111E3
|is_a=CL:0000786;;EFO:0002091;;FF:0000210;;FF:0102992
|is_a=CL:0000786;;EFO:0002091;;FF:0000210;;FF:0102992
Line 46: Line 51:
|library_id=CNhs12807
|library_id=CNhs12807
|library_id_phase_based=2:CNhs12807
|library_id_phase_based=2:CNhs12807
|microRNAs=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10840
|name=plasma cell leukemia cell line:ARH-77
|name=plasma cell leukemia cell line:ARH-77
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_hcage="CNhs12807,LSID972,release012,COMPLETED"
|profile_hcage=CNhs12807,LSID972,release012,COMPLETED
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Line 90: Line 100:
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|top_motifs=POU2F1..3:2.86225114448;PAX6:2.12931736635;POU5F1:2.04423357147;HOXA9_MEIS1:1.87547667542;IRF1,2:1.54648651776;DMAP1_NCOR{1,2}_SMARC:1.53070719488;NFY{A,B,C}:1.52100213269;IRF7:1.45505876856;CDX1,2,4:1.44033814354;E2F1..5:1.33667351923;PDX1:1.24089425439;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23078233898;MYB:1.20890857379;NFKB1_REL_RELA:1.14663492546;MYOD1:1.13706961699;HIF1A:1.08286765313;ELK1,4_GABP{A,B1}:1.06757890918;RORA:1.00757208022;ELF1,2,4:0.985128015364;RUNX1..3:0.982464847837;FOXA2:0.975616382536;PBX1:0.952814517455;NKX2-1,4:0.887960121606;PAX8:0.865202601532;ATF4:0.863884098313;NKX6-1,2:0.82866793376;BREu{core}:0.725241684991;RBPJ:0.71509989508;SPI1:0.701162795952;ZNF143:0.700116681668;PAX3,7:0.699220110373;ZBTB16:0.693504157569;YY1:0.650510379519;LMO2:0.642222021172;OCT4_SOX2{dimer}:0.635008405951;NRF1:0.609914356248;CUX2:0.605971994686;bHLH_family:0.604289134814;TGIF1:0.597306775314;POU1F1:0.543741050259;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.500708767675;EVI1:0.477001627604;SPIB:0.41453830225;GATA6:0.405764481845;AIRE:0.403957164732;NFIX:0.39959880829;FOXP3:0.377924093021;IKZF2:0.374046140237;ZEB1:0.334453078523;ATF5_CREB3:0.332787051086;NR5A1,2:0.273778270033;AHR_ARNT_ARNT2:0.257566821602;TLX2:0.234749837988;ETS1,2:0.230903264124;SOX{8,9,10}:0.2208785132;RFX2..5_RFXANK_RFXAP:0.194534053075;ZNF148:0.17870722861;HES1:0.152379841299;CREB1:0.145842703009;HBP1_HMGB_SSRP1_UBTF:0.144698039365;POU3F1..4:0.129370940878;PRRX1,2:0.127678084322;GFI1:0.117529433838;SNAI1..3:0.116209855445;PAX2:0.077449280595;PPARG:0.0668604327589;FOXN1:0.0624922712865;CDC5L:0.0220911049539;NANOG{mouse}:0.011454890754;SOX5:0.00469431050001;NKX2-2,8:0.00352742260944;FOX{F1,F2,J1}:0.00191253612485;MEF2{A,B,C,D}:-0.00518922230694;VSX1,2:-0.00936976944096;DBP:-0.0356229741339;LEF1_TCF7_TCF7L1,2:-0.0508880866071;FOXP1:-0.112851156403;ARID5B:-0.143939228513;HOX{A6,A7,B6,B7}:-0.154067222281;FOSL2:-0.167668901774;STAT5{A,B}:-0.169868946094;TBP:-0.182126823804;HSF1,2:-0.183608880192;ZNF384:-0.186396364863;RXR{A,B,G}:-0.191262891749;CRX:-0.201772961277;PAX4:-0.202628749425;CEBPA,B_DDIT3:-0.208771036482;FOXQ1:-0.210691636723;ESRRA:-0.22554460113;PITX1..3:-0.228170253383;BPTF:-0.233104491092;HNF4A_NR2F1,2:-0.235300695485;SMAD1..7,9:-0.24381005928;SOX17:-0.244203528988;NFE2:-0.255778831115;ESR1:-0.278469086453;POU6F1:-0.281878589674;NFATC1..3:-0.290083410213;EBF1:-0.297597197168;TFDP1:-0.315285090186;HNF1A:-0.329030898696;ATF6:-0.330826709697;SREBF1,2:-0.349656095974;HMGA1,2:-0.357473979254;JUN:-0.380182894655;UFEwm:-0.391858304056;ATF2:-0.392008636577;RXRA_VDR{dimer}:-0.396932994154;ONECUT1,2:-0.404657275293;AR:-0.409426149481;TEF:-0.4124461808;FOXO1,3,4:-0.42406523614;HOX{A5,B5}:-0.43460321116;ZFP161:-0.437358958266;TFAP4:-0.447591437406;TOPORS:-0.460973917818;NR6A1:-0.473789584312;MYFfamily:-0.511487174673;PRDM1:-0.511689869509;GCM1,2:-0.516101880096;HAND1,2:-0.52482444075;SPZ1:-0.536258809966;FOS_FOS{B,L1}_JUN{B,D}:-0.554447201904;STAT2,4,6:-0.55689671594;RFX1:-0.57490529002;GFI1B:-0.581708192848;BACH2:-0.588961059788;NHLH1,2:-0.600154489759;NFIL3:-0.612051060487;HOX{A4,D4}:-0.628802879124;MAFB:-0.638835842802;NKX3-2:-0.650900704277;TAL1_TCF{3,4,12}:-0.668567373859;ALX4:-0.674085030613;STAT1,3:-0.716069728703;TP53:-0.723095308116;EGR1..3:-0.730558751139;EN1,2:-0.738798699961;SOX2:-0.776774916017;FOX{D1,D2}:-0.786161896983;PATZ1:-0.789177195788;RREB1:-0.814574082709;GLI1..3:-0.827130822024;REST:-0.837437917178;MTE{core}:-0.838872882001;HLF:-0.86602632347;NKX3-1:-0.873975242897;PAX5:-0.874320546956;SRF:-0.898388648169;ADNP_IRX_SIX_ZHX:-0.953313242029;GATA4:-0.961239901754;T:-1.01685536879;HIC1:-1.02810191911;MED-1{core}:-1.02812221057;ZNF238:-1.02902639847;NANOG:-1.03061420954;NFE2L2:-1.03753710539;MTF1:-1.06051923416;FOXL1:-1.08945693962;GTF2A1,2:-1.12155946682;ALX1:-1.12963105082;PAX1,9:-1.12993654887;ZIC1..3:-1.13775479452;IKZF1:-1.13783370407;LHX3,4:-1.15625724399;GZF1:-1.16746990872;MYBL2:-1.17598190064;XBP1:-1.18989665209;EP300:-1.20891386243;MZF1:-1.2177062385;SP1:-1.23420438168;TBX4,5:-1.2559353353;FOXD3:-1.26786782295;HMX1:-1.29323806928;NR1H4:-1.30978970559;GTF2I:-1.31759260776;ZBTB6:-1.33535716242;NKX2-3_NKX2-5:-1.34639119422;ZNF423:-1.34892427995;NR3C1:-1.36267289887;TFAP2B:-1.37705689226;KLF4:-1.40461022524;FOXM1:-1.42554028359;NFE2L1:-1.44427150881;MAZ:-1.44891837647;XCPE1{core}:-1.48557028897;TFAP2{A,C}:-1.54434990668;TFCP2:-1.61323651831;TEAD1:-1.61868089366;TLX1..3_NFIC{dimer}:-1.70308564928;FOX{I1,J2}:-1.73202205738
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10840-111E3;search_select_hide=table117:FF:10840-111E3
}}
}}

Latest revision as of 15:08, 3 June 2020

Name:plasma cell leukemia cell line:ARH-77
Species:Human (Homo sapiens)
Library ID:CNhs12807
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age33
cell typeplasma cell
cell lineARH-77
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004916
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12807 CAGE DRX007985 DRR008857
Accession ID Hg19

Library idBAMCTSS
CNhs12807 DRZ000282 DRZ001667
Accession ID Hg38

Library idBAMCTSS
CNhs12807 DRZ011632 DRZ013017
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.101
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0182
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.548
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.00912
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0474
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0384
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0474
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0.892
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0474
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0336
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0901
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0928
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.504
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0.0474
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.0474
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0666
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.053
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0474
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.7
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.153
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00134
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0474
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0026
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.165
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0474
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.486
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0901
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0474
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0474
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0.0901
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.145
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.356
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0.0474
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0474
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12807

Jaspar motifP-value
MA0002.20.0139
MA0003.10.522
MA0004.10.0129
MA0006.10.172
MA0007.10.702
MA0009.10.612
MA0014.10.937
MA0017.10.486
MA0018.20.593
MA0019.10.967
MA0024.11.50395e-7
MA0025.10.502
MA0027.10.816
MA0028.12.53444e-5
MA0029.10.327
MA0030.10.106
MA0031.10.603
MA0035.20.113
MA0038.10.133
MA0039.20.964
MA0040.10.11
MA0041.10.227
MA0042.10.466
MA0043.10.949
MA0046.10.252
MA0047.20.852
MA0048.10.936
MA0050.11.39552e-19
MA0051.11.29241e-14
MA0052.10.401
MA0055.10.157
MA0057.10.767
MA0058.10.00846
MA0059.12.43636e-4
MA0060.14.98294e-17
MA0061.13.37274e-9
MA0062.22.02209e-8
MA0065.20.0671
MA0066.10.706
MA0067.10.478
MA0068.10.257
MA0069.10.927
MA0070.10.762
MA0071.10.834
MA0072.10.12
MA0073.10.595
MA0074.10.644
MA0076.15.13093e-8
MA0077.10.446
MA0078.10.107
MA0079.20.32
MA0080.22.99287e-5
MA0081.10.0209
MA0083.10.416
MA0084.10.105
MA0087.10.0903
MA0088.10.0274
MA0090.11.91167e-5
MA0091.10.856
MA0092.10.521
MA0093.10.0106
MA0099.20.00131
MA0100.10.0561
MA0101.11.34007e-7
MA0102.20.354
MA0103.10.0204
MA0104.21.04975e-4
MA0105.14.25612e-8
MA0106.10.903
MA0107.13.70235e-8
MA0108.20.101
MA0111.10.522
MA0112.20.927
MA0113.10.307
MA0114.10.197
MA0115.10.272
MA0116.10.00101
MA0117.10.724
MA0119.10.421
MA0122.10.387
MA0124.10.384
MA0125.10.55
MA0131.10.136
MA0135.10.529
MA0136.13.89651e-8
MA0137.20.425
MA0138.20.973
MA0139.10.231
MA0140.10.00625
MA0141.10.431
MA0142.10.194
MA0143.10.287
MA0144.10.0755
MA0145.10.128
MA0146.10.727
MA0147.14.32092e-5
MA0148.10.268
MA0149.10.238
MA0150.10.546
MA0152.10.172
MA0153.10.0943
MA0154.10.012
MA0155.10.556
MA0156.11.7092e-9
MA0157.10.924
MA0159.10.218
MA0160.10.375
MA0162.10.492
MA0163.12.8517e-8
MA0164.10.262
MA0258.10.514
MA0259.10.0129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12807

Novel motifP-value
10.143
100.0245
1000.216
1010.457
1020.473
1030.332
1040.579
1050.479
1060.801
1070.313
1080.938
1090.0963
110.532
1100.613
1110.044
1120.888
1130.858
1140.726
1150.5
1160.723
1170.0313
1180.56
1190.395
120.674
1200.871
1210.195
1220.344
1230.202
1240.019
1250.559
1260.132
1270.561
1280.145
1290.294
130.0447
1300.257
1310.52
1320.121
1330.258
1340.558
1350.642
1360.16
1370.58
1380.558
1390.846
140.828
1400.203
1410.00515
1420.791
1430.0276
1440.458
1450.758
1460.931
1470.263
1480.172
1490.389
150.0592
1500.859
1510.161
1520.0571
1530.795
1540.617
1550.108
1560.764
1570.214
1580.412
1590.332
160.356
1600.418
1610.0374
1620.558
1630.948
1640.958
1650.912
1660.253
1670.134
1680.719
1690.216
170.913
180.419
190.496
20.133
200.106
210.44
220.499
230.207
240.0491
250.0622
260.152
270.92
280.561
290.00351
30.446
300.0761
310.794
320.189
330.3
340.519
350.231
360.0404
370.723
380.446
390.247
40.0381
400.114
410.492
420.263
430.455
440.213
450.261
460.454
470.128
480.273
490.159
50.637
500.741
510.697
520.186
530.777
540.283
550.184
560.941
570.798
580.07
590.657
60.988
600.933
610.229
620.131
630.59
640.773
650.691
664.18633e-5
670.491
680.229
690.83
70.128
700.789
710.0308
720.186
730.56
740.961
750.0185
760.153
770.0221
780.162
790.689
80.556
800.257
810.264
820.365
830.096
840.696
850.308
860.368
870.088
880.697
890.354
90.425
900.309
910.505
920.711
930.419
940.928
950.00716
960.8
970.179
980.832
990.0575



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12807


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000946 (antibody secreting cell)
0000786 (plasma cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101035 (hematopoietic cell line sample)
0100773 (lymphoblastoid cell line sample)
0101522 (B-lymphocyte cell line sample)
0102062 (B-lymphoblastoid cell line sample)
0102992 (ARH-77 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000954 (small pre-B-II cell)

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