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{{f5samples
{{f5samples
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Line 35: Line 43:
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg38.nobarcode.bam
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|id=FF:10843-111E6
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10843
|name=merkel cell carcinoma cell line:MKL-1
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Line 42: Line 62:
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Line 54: Line 77:
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Line 69: Line 94:
|sample_ethnicity=C
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.6627950529237e-299!GO:0043226;organelle;7.50820433518173e-272!GO:0043229;intracellular organelle;1.44377794854598e-271!GO:0043231;intracellular membrane-bound organelle;3.10562444027327e-270!GO:0043227;membrane-bound organelle;1.00536811553645e-269!GO:0044422;organelle part;3.74090610699503e-174!GO:0044446;intracellular organelle part;2.12592699895992e-173!GO:0005634;nucleus;3.68269040424078e-159!GO:0005737;cytoplasm;2.61566378924845e-138!GO:0032991;macromolecular complex;1.19684423309721e-116!GO:0044237;cellular metabolic process;3.97040239009454e-115!GO:0044238;primary metabolic process;3.07774868948989e-110!GO:0043170;macromolecule metabolic process;1.01298126441572e-108!GO:0044428;nuclear part;5.99210844770691e-101!GO:0044444;cytoplasmic part;5.39778382368093e-99!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.51309659695973e-96!GO:0030529;ribonucleoprotein complex;5.08318337271358e-88!GO:0043283;biopolymer metabolic process;3.13409951074051e-87!GO:0003723;RNA binding;1.85567194100104e-85!GO:0043233;organelle lumen;2.28385846745238e-82!GO:0031974;membrane-enclosed lumen;2.28385846745238e-82!GO:0010467;gene expression;2.28385846745238e-82!GO:0003676;nucleic acid binding;7.92038941261225e-70!GO:0006396;RNA processing;1.27293637347096e-62!GO:0005739;mitochondrion;2.03737918825495e-62!GO:0043234;protein complex;1.0017730916831e-61!GO:0006259;DNA metabolic process;7.4829482496559e-59!GO:0016043;cellular component organization and biogenesis;3.16353772413037e-57!GO:0031981;nuclear lumen;1.03741845556534e-55!GO:0016070;RNA metabolic process;3.97943255160334e-54!GO:0006996;organelle organization and biogenesis;1.95477480198813e-53!GO:0005515;protein binding;2.86085162954057e-53!GO:0016071;mRNA metabolic process;5.36026827955597e-50!GO:0043228;non-membrane-bound organelle;1.12853961643939e-48!GO:0043232;intracellular non-membrane-bound organelle;1.12853961643939e-48!GO:0008380;RNA splicing;8.08076712834318e-47!GO:0005840;ribosome;9.42042110027606e-47!GO:0044429;mitochondrial part;1.24071508250207e-44!GO:0031967;organelle envelope;1.63948023427523e-44!GO:0031090;organelle membrane;3.95978687321613e-44!GO:0031975;envelope;3.98944981140099e-44!GO:0006397;mRNA processing;4.70190284255722e-44!GO:0006412;translation;5.16956857612306e-40!GO:0003735;structural constituent of ribosome;1.74469543646011e-39!GO:0033036;macromolecule localization;3.15854228031562e-39!GO:0005694;chromosome;8.84991763226875e-38!GO:0015031;protein transport;3.45130680514201e-37!GO:0007049;cell cycle;6.12024913683526e-37!GO:0005654;nucleoplasm;4.59799498860277e-35!GO:0033279;ribosomal subunit;4.85244083743014e-35!GO:0046907;intracellular transport;8.63013956336485e-35!GO:0008104;protein localization;2.00066373904857e-34!GO:0065003;macromolecular complex assembly;3.7881921979445e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.77686576485223e-34!GO:0045184;establishment of protein localization;5.71380690056734e-33!GO:0051276;chromosome organization and biogenesis;1.24832029707805e-32!GO:0005681;spliceosome;1.26450649841919e-32!GO:0044427;chromosomal part;1.75138935272524e-32!GO:0000166;nucleotide binding;2.49685931862957e-31!GO:0022607;cellular component assembly;3.03343030420058e-31!GO:0006974;response to DNA damage stimulus;3.21785629289349e-31!GO:0006281;DNA repair;3.5743844490521e-30!GO:0044249;cellular biosynthetic process;4.88977567532815e-30!GO:0009058;biosynthetic process;9.99782664376097e-30!GO:0009059;macromolecule biosynthetic process;3.26343794023785e-29!GO:0019538;protein metabolic process;1.05407463162224e-28!GO:0000278;mitotic cell cycle;1.76933727072172e-28!GO:0005740;mitochondrial envelope;3.14109168453772e-28!GO:0022402;cell cycle process;7.25729468086114e-28!GO:0051649;establishment of cellular localization;8.93122122887401e-28!GO:0044451;nucleoplasm part;9.14807288605396e-28!GO:0019866;organelle inner membrane;9.66083644279382e-28!GO:0051641;cellular localization;5.30568372897616e-27!GO:0044267;cellular protein metabolic process;8.27133358590919e-27!GO:0031966;mitochondrial membrane;3.12756298607979e-26!GO:0044260;cellular macromolecule metabolic process;3.37884999630936e-26!GO:0016462;pyrophosphatase activity;8.78920920797341e-26!GO:0022403;cell cycle phase;1.272030479535e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.27568589940759e-25!GO:0006325;establishment and/or maintenance of chromatin architecture;1.31205045106082e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;1.49193781891822e-25!GO:0017111;nucleoside-triphosphatase activity;3.35565621341328e-25!GO:0000087;M phase of mitotic cell cycle;5.4604248748023e-25!GO:0005743;mitochondrial inner membrane;8.37917775611851e-25!GO:0005829;cytosol;8.41941766105936e-25!GO:0006323;DNA packaging;1.11184788027998e-24!GO:0006886;intracellular protein transport;1.40945588743126e-24!GO:0007067;mitosis;2.16439418624638e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.54779069944807e-24!GO:0000279;M phase;3.45016085912234e-23!GO:0006119;oxidative phosphorylation;4.04194649547413e-23!GO:0006260;DNA replication;9.5371216976085e-23!GO:0051301;cell division;1.42073628537703e-21!GO:0044445;cytosolic part;2.6588243573675e-21!GO:0044455;mitochondrial membrane part;2.84639033220006e-21!GO:0005730;nucleolus;1.04907546790152e-20!GO:0032553;ribonucleotide binding;1.52682202772725e-20!GO:0032555;purine ribonucleotide binding;1.52682202772725e-20!GO:0005524;ATP binding;1.92091629436137e-20!GO:0016887;ATPase activity;2.48880329712743e-20!GO:0022618;protein-RNA complex assembly;3.54219768637175e-20!GO:0031980;mitochondrial lumen;6.6807570502727e-20!GO:0005759;mitochondrial matrix;6.6807570502727e-20!GO:0032559;adenyl ribonucleotide binding;1.33471896750604e-19!GO:0009719;response to endogenous stimulus;1.33471896750604e-19!GO:0017076;purine nucleotide binding;1.77377176818627e-19!GO:0042623;ATPase activity, coupled;3.99961198836016e-19!GO:0031965;nuclear membrane;5.68765947931255e-19!GO:0006350;transcription;1.04450009491811e-18!GO:0015935;small ribosomal subunit;1.06922867508588e-18!GO:0019222;regulation of metabolic process;1.76296306347856e-18!GO:0006333;chromatin assembly or disassembly;2.20848673361377e-18!GO:0030554;adenyl nucleotide binding;3.26792116798458e-18!GO:0006512;ubiquitin cycle;4.02153350902611e-18!GO:0000785;chromatin;4.08702786444566e-18!GO:0012505;endomembrane system;5.29451169812535e-18!GO:0005635;nuclear envelope;1.48700015637359e-17!GO:0015934;large ribosomal subunit;1.57154542452665e-17!GO:0005746;mitochondrial respiratory chain;1.9966752928938e-17!GO:0015630;microtubule cytoskeleton;2.29888485841914e-17!GO:0003677;DNA binding;7.74678694122515e-17!GO:0044453;nuclear membrane part;8.41893806530037e-17!GO:0016604;nuclear body;8.74122273556883e-17!GO:0016874;ligase activity;1.12035664780627e-16!GO:0008135;translation factor activity, nucleic acid binding;1.60200296541879e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.4408913969385e-16!GO:0000375;RNA splicing, via transesterification reactions;2.4408913969385e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.4408913969385e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.00336254873774e-16!GO:0003954;NADH dehydrogenase activity;3.00336254873774e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.00336254873774e-16!GO:0032774;RNA biosynthetic process;3.02440396781353e-16!GO:0008134;transcription factor binding;3.42467150565529e-16!GO:0031323;regulation of cellular metabolic process;5.21645155874204e-16!GO:0006351;transcription, DNA-dependent;5.46829599138809e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.46602421931714e-16!GO:0006457;protein folding;1.155663124617e-15!GO:0044265;cellular macromolecule catabolic process;1.19975216344214e-15!GO:0065004;protein-DNA complex assembly;1.63935326404309e-15!GO:0010468;regulation of gene expression;2.00731610232363e-15!GO:0004386;helicase activity;2.48120143503382e-15!GO:0016568;chromatin modification;3.21935127859761e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.04693784624294e-15!GO:0005643;nuclear pore;9.18822174889406e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.87941250069774e-15!GO:0005761;mitochondrial ribosome;1.47671812787259e-14!GO:0000313;organellar ribosome;1.47671812787259e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.17615794138474e-14!GO:0042254;ribosome biogenesis and assembly;2.38329423841099e-14!GO:0019941;modification-dependent protein catabolic process;2.48319890975869e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.48319890975869e-14!GO:0016607;nuclear speck;3.44387702857333e-14!GO:0050657;nucleic acid transport;3.45652938022263e-14!GO:0051236;establishment of RNA localization;3.45652938022263e-14!GO:0050658;RNA transport;3.45652938022263e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.30406992335865e-14!GO:0045271;respiratory chain complex I;4.30406992335865e-14!GO:0005747;mitochondrial respiratory chain complex I;4.30406992335865e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.3122135044155e-14!GO:0042773;ATP synthesis coupled electron transport;5.3122135044155e-14!GO:0006403;RNA localization;5.86220006723593e-14!GO:0045449;regulation of transcription;5.89195937738363e-14!GO:0051082;unfolded protein binding;6.59293411040232e-14!GO:0044257;cellular protein catabolic process;6.60834363766698e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.48795609843268e-13!GO:0008026;ATP-dependent helicase activity;2.32497304873572e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.70969980977032e-13!GO:0006355;regulation of transcription, DNA-dependent;6.85425487107483e-13!GO:0043285;biopolymer catabolic process;7.48641040618439e-13!GO:0031497;chromatin assembly;1.01668144768129e-12!GO:0000775;chromosome, pericentric region;1.25593771185494e-12!GO:0009057;macromolecule catabolic process;1.54404334318306e-12!GO:0003743;translation initiation factor activity;1.60677440470856e-12!GO:0006334;nucleosome assembly;1.85688869556147e-12!GO:0006413;translational initiation;2.39515176467947e-12!GO:0043566;structure-specific DNA binding;2.86672940382444e-12!GO:0046930;pore complex;3.68226900381549e-12!GO:0051028;mRNA transport;3.95639405030284e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.97951715385137e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.11444507803667e-12!GO:0050794;regulation of cellular process;6.31980072027866e-12!GO:0003697;single-stranded DNA binding;1.31936658843273e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.76884557470636e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.45881272185914e-11!GO:0006261;DNA-dependent DNA replication;4.18829616735276e-11!GO:0006605;protein targeting;4.20012634225833e-11!GO:0005819;spindle;4.43818574854565e-11!GO:0006446;regulation of translational initiation;5.70075939858591e-11!GO:0005794;Golgi apparatus;8.14001775615082e-11!GO:0009259;ribonucleotide metabolic process;1.09914451561722e-10!GO:0006364;rRNA processing;1.622837294779e-10!GO:0065002;intracellular protein transport across a membrane;1.70489314631711e-10!GO:0006163;purine nucleotide metabolic process;1.73885542410333e-10!GO:0051726;regulation of cell cycle;1.93452786193452e-10!GO:0006399;tRNA metabolic process;1.93452786193452e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.01715296467452e-10!GO:0051186;cofactor metabolic process;2.05578911410139e-10!GO:0048770;pigment granule;2.29379579849953e-10!GO:0042470;melanosome;2.29379579849953e-10!GO:0043412;biopolymer modification;2.29379579849953e-10!GO:0030163;protein catabolic process;2.62749945840919e-10!GO:0044248;cellular catabolic process;2.72120786906984e-10!GO:0016072;rRNA metabolic process;3.13584062487221e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.49874547207896e-10!GO:0019829;cation-transporting ATPase activity;3.6989563179693e-10!GO:0016192;vesicle-mediated transport;4.35838543016182e-10!GO:0048193;Golgi vesicle transport;5.01103449780402e-10!GO:0003712;transcription cofactor activity;5.0425722837453e-10!GO:0006913;nucleocytoplasmic transport;6.25353410539229e-10!GO:0000074;regulation of progression through cell cycle;6.4773541930572e-10!GO:0008565;protein transporter activity;6.91446936083205e-10!GO:0006164;purine nucleotide biosynthetic process;1.1957532509953e-09!GO:0008094;DNA-dependent ATPase activity;1.19717456190704e-09!GO:0051169;nuclear transport;1.36314000076904e-09!GO:0009260;ribonucleotide biosynthetic process;1.70107186662066e-09!GO:0009150;purine ribonucleotide metabolic process;1.74454724542545e-09!GO:0005874;microtubule;1.93409917476504e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65515036600252e-09!GO:0007017;microtubule-based process;3.6188008238991e-09!GO:0006366;transcription from RNA polymerase II promoter;4.19596439286504e-09!GO:0006732;coenzyme metabolic process;4.97494761323058e-09!GO:0009055;electron carrier activity;5.4844128545228e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.86672167534558e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.33659324045954e-09!GO:0009141;nucleoside triphosphate metabolic process;8.38647268004898e-09!GO:0016779;nucleotidyltransferase activity;8.99064665638209e-09!GO:0006464;protein modification process;1.01737914572566e-08!GO:0050789;regulation of biological process;1.09411668115666e-08!GO:0044432;endoplasmic reticulum part;1.17280213856314e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.20903167580123e-08!GO:0005657;replication fork;1.79108083322457e-08!GO:0005783;endoplasmic reticulum;1.8666453178314e-08!GO:0015986;ATP synthesis coupled proton transport;1.91102408175433e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.91102408175433e-08!GO:0000245;spliceosome assembly;1.95481642846981e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.99643399981232e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.99643399981232e-08!GO:0005813;centrosome;2.54374671111206e-08!GO:0005815;microtubule organizing center;2.85672574649841e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.97121137553562e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.97121137553562e-08!GO:0009060;aerobic respiration;3.0772815129398e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.09768670549984e-08!GO:0007051;spindle organization and biogenesis;4.38019325219979e-08!GO:0046034;ATP metabolic process;5.77358671555983e-08!GO:0003682;chromatin binding;6.06234234135008e-08!GO:0007059;chromosome segregation;6.82097387397218e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.89907826844626e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.89907826844626e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.39175604430241e-08!GO:0004812;aminoacyl-tRNA ligase activity;8.39175604430241e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.39175604430241e-08!GO:0043687;post-translational protein modification;1.14229733442203e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.26524428408359e-07!GO:0045333;cellular respiration;1.29101958781364e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.56321622416635e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.75476348027318e-07!GO:0006754;ATP biosynthetic process;1.84001292550034e-07!GO:0006753;nucleoside phosphate metabolic process;1.84001292550034e-07!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.84001292550034e-07!GO:0043038;amino acid activation;2.20990493166559e-07!GO:0006418;tRNA aminoacylation for protein translation;2.20990493166559e-07!GO:0043039;tRNA aminoacylation;2.20990493166559e-07!GO:0043623;cellular protein complex assembly;2.49910383659093e-07!GO:0008639;small protein conjugating enzyme activity;3.46958569493187e-07!GO:0003899;DNA-directed RNA polymerase activity;5.45343280883568e-07!GO:0019787;small conjugating protein ligase activity;5.46416297861243e-07!GO:0000075;cell cycle checkpoint;6.3395596763106e-07!GO:0044431;Golgi apparatus part;6.64393240122075e-07!GO:0004842;ubiquitin-protein ligase activity;7.14268660984271e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.48419322762403e-07!GO:0006302;double-strand break repair;7.9768065641641e-07!GO:0051329;interphase of mitotic cell cycle;8.22894971432778e-07!GO:0032446;protein modification by small protein conjugation;8.57837636413835e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.93321936103877e-07!GO:0006084;acetyl-CoA metabolic process;1.03122353938639e-06!GO:0000786;nucleosome;1.09140833949881e-06!GO:0017038;protein import;1.15918172803307e-06!GO:0045259;proton-transporting ATP synthase complex;1.2367651268219e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.2367651268219e-06!GO:0003724;RNA helicase activity;1.24821295020942e-06!GO:0006099;tricarboxylic acid cycle;1.27012049598038e-06!GO:0046356;acetyl-CoA catabolic process;1.27012049598038e-06!GO:0007005;mitochondrion organization and biogenesis;1.34811749723544e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.35476388709462e-06!GO:0000776;kinetochore;1.46490288416973e-06!GO:0051325;interphase;1.64059826064418e-06!GO:0005667;transcription factor complex;2.17182604388483e-06!GO:0005789;endoplasmic reticulum membrane;2.31994253702946e-06!GO:0000228;nuclear chromosome;2.41735534376733e-06!GO:0016363;nuclear matrix;2.44172849975898e-06!GO:0007010;cytoskeleton organization and biogenesis;2.53296609950697e-06!GO:0016567;protein ubiquitination;2.60765500967048e-06!GO:0006461;protein complex assembly;2.70300496226328e-06!GO:0003729;mRNA binding;3.1654397623727e-06!GO:0006752;group transfer coenzyme metabolic process;3.31258990551725e-06!GO:0016881;acid-amino acid ligase activity;3.53241556319236e-06!GO:0000151;ubiquitin ligase complex;3.74459218914773e-06!GO:0051168;nuclear export;4.72788610007711e-06!GO:0048475;coated membrane;5.00925198125045e-06!GO:0030117;membrane coat;5.00925198125045e-06!GO:0003678;DNA helicase activity;5.86325925282936e-06!GO:0051188;cofactor biosynthetic process;6.14829226593764e-06!GO:0003690;double-stranded DNA binding;1.01848179489431e-05!GO:0006310;DNA recombination;1.0232823889048e-05!GO:0008168;methyltransferase activity;1.07828835185627e-05!GO:0005768;endosome;1.07828835185627e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.12545146333262e-05!GO:0009117;nucleotide metabolic process;1.20598124573981e-05!GO:0005762;mitochondrial large ribosomal subunit;1.3005564997126e-05!GO:0000315;organellar large ribosomal subunit;1.3005564997126e-05!GO:0009109;coenzyme catabolic process;1.36422613722078e-05!GO:0016740;transferase activity;1.42625874567619e-05!GO:0015631;tubulin binding;1.67838486094615e-05!GO:0006613;cotranslational protein targeting to membrane;1.75774048727002e-05!GO:0003713;transcription coactivator activity;1.83354984642335e-05!GO:0000792;heterochromatin;1.92057841935678e-05!GO:0045045;secretory pathway;2.08179878758721e-05!GO:0000139;Golgi membrane;2.48169501977687e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.54599612464004e-05!GO:0003684;damaged DNA binding;2.87562425883278e-05!GO:0009108;coenzyme biosynthetic process;3.33183856254958e-05!GO:0008186;RNA-dependent ATPase activity;3.98557271968614e-05!GO:0030120;vesicle coat;4.82626773091502e-05!GO:0030662;coated vesicle membrane;4.82626773091502e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.95152889968296e-05!GO:0008022;protein C-terminus binding;6.00265770472527e-05!GO:0044440;endosomal part;6.07377485165684e-05!GO:0010008;endosome membrane;6.07377485165684e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.49017130386509e-05!GO:0000314;organellar small ribosomal subunit;6.5537246309334e-05!GO:0005763;mitochondrial small ribosomal subunit;6.5537246309334e-05!GO:0006383;transcription from RNA polymerase III promoter;6.88648446009311e-05!GO:0051427;hormone receptor binding;7.78011553156407e-05!GO:0009056;catabolic process;7.99391075664336e-05!GO:0051187;cofactor catabolic process;8.08096929233119e-05!GO:0006338;chromatin remodeling;8.62137757868308e-05!GO:0032508;DNA duplex unwinding;0.000110266826952035!GO:0032392;DNA geometric change;0.000110266826952035!GO:0007088;regulation of mitosis;0.000111744036420812!GO:0000059;protein import into nucleus, docking;0.000121273313880855!GO:0016023;cytoplasmic membrane-bound vesicle;0.000122691657308641!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000127493434649921!GO:0015399;primary active transmembrane transporter activity;0.000127493434649921!GO:0031988;membrane-bound vesicle;0.00012772707555687!GO:0004004;ATP-dependent RNA helicase activity;0.000128719234917842!GO:0006405;RNA export from nucleus;0.000136465716326874!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000154470918102184!GO:0008654;phospholipid biosynthetic process;0.000155355319423547!GO:0006284;base-excision repair;0.000168224081533731!GO:0035257;nuclear hormone receptor binding;0.000172102808692587!GO:0004527;exonuclease activity;0.000173740805278962!GO:0007052;mitotic spindle organization and biogenesis;0.000176046976307485!GO:0031982;vesicle;0.00018858358145596!GO:0044454;nuclear chromosome part;0.000189068852154442!GO:0006839;mitochondrial transport;0.000191967999162626!GO:0009165;nucleotide biosynthetic process;0.000197065487812937!GO:0031410;cytoplasmic vesicle;0.000200336922993335!GO:0005876;spindle microtubule;0.000214963556222898!GO:0006414;translational elongation;0.000218016946634459!GO:0043021;ribonucleoprotein binding;0.000223257851253801!GO:0006270;DNA replication initiation;0.000229713776105844!GO:0005793;ER-Golgi intermediate compartment;0.000229713776105844!GO:0031072;heat shock protein binding;0.000233072337002915!GO:0008270;zinc ion binding;0.000238538655648174!GO:0000819;sister chromatid segregation;0.00024035601303734!GO:0005798;Golgi-associated vesicle;0.000253776149153025!GO:0006268;DNA unwinding during replication;0.000290091023815601!GO:0006352;transcription initiation;0.000292364237918436!GO:0005637;nuclear inner membrane;0.000303171985614768!GO:0008033;tRNA processing;0.000305918418487372!GO:0051170;nuclear import;0.000307073863833904!GO:0007006;mitochondrial membrane organization and biogenesis;0.000311071490724396!GO:0000070;mitotic sister chromatid segregation;0.000319637642242512!GO:0003924;GTPase activity;0.000326410785597774!GO:0065007;biological regulation;0.000337950764466155!GO:0048471;perinuclear region of cytoplasm;0.000353037517601539!GO:0044452;nucleolar part;0.000389447765089307!GO:0004003;ATP-dependent DNA helicase activity;0.000389447765089307!GO:0008017;microtubule binding;0.00039196314737884!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000394467518629828!GO:0043596;nuclear replication fork;0.000397023450955704!GO:0046474;glycerophospholipid biosynthetic process;0.00040136234869454!GO:0003714;transcription corepressor activity;0.0004204965783264!GO:0005684;U2-dependent spliceosome;0.00042267566738616!GO:0006606;protein import into nucleus;0.000422981223383211!GO:0016853;isomerase activity;0.000425611163887566!GO:0000922;spindle pole;0.000429653689288221!GO:0016787;hydrolase activity;0.000442680139487304!GO:0031124;mRNA 3'-end processing;0.000489263818264099!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000573508788545635!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000591067185965325!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000596757060095657!GO:0042393;histone binding;0.000603572157687055!GO:0004674;protein serine/threonine kinase activity;0.0006367271329134!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000707015238550385!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000707015238550385!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000707015238550385!GO:0043681;protein import into mitochondrion;0.000715982667827281!GO:0003711;transcription elongation regulator activity;0.000773064398008093!GO:0005048;signal sequence binding;0.000862475874820362!GO:0043492;ATPase activity, coupled to movement of substances;0.000871895837290097!GO:0015992;proton transport;0.000873598845111804!GO:0006289;nucleotide-excision repair;0.000935188279571044!GO:0030118;clathrin coat;0.000947755331161511!GO:0006818;hydrogen transport;0.000963468577005282!GO:0006793;phosphorus metabolic process;0.000963468577005282!GO:0006796;phosphate metabolic process;0.000963468577005282!GO:0051052;regulation of DNA metabolic process;0.00097782909469451!GO:0008276;protein methyltransferase activity;0.00104680976906416!GO:0016564;transcription repressor activity;0.00105236562855919!GO:0032259;methylation;0.00114939133698753!GO:0007093;mitotic cell cycle checkpoint;0.0011655937631336!GO:0046489;phosphoinositide biosynthetic process;0.00120441469773417!GO:0048500;signal recognition particle;0.00120519686471499!GO:0000287;magnesium ion binding;0.00120519686471499!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00120903520595758!GO:0016859;cis-trans isomerase activity;0.00121459463139831!GO:0000790;nuclear chromatin;0.00122188548296733!GO:0019867;outer membrane;0.0012766219843149!GO:0000725;recombinational repair;0.0013147421886204!GO:0000724;double-strand break repair via homologous recombination;0.0013147421886204!GO:0005905;coated pit;0.00132052046454724!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0013391710240763!GO:0004576;oligosaccharyl transferase activity;0.00134803616803754!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00135964544948117!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00135964544948117!GO:0006626;protein targeting to mitochondrion;0.00137805126265919!GO:0031123;RNA 3'-end processing;0.00138137501884272!GO:0006612;protein targeting to membrane;0.00141996143557406!GO:0005839;proteasome core complex (sensu Eukaryota);0.00143277245016588!GO:0031968;organelle outer membrane;0.00144530784921218!GO:0016126;sterol biosynthetic process;0.00147586201482927!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00148463699475471!GO:0005741;mitochondrial outer membrane;0.00150488382216477!GO:0051920;peroxiredoxin activity;0.00153532056794579!GO:0030880;RNA polymerase complex;0.00153532056794579!GO:0040029;regulation of gene expression, epigenetic;0.0016467867361292!GO:0016310;phosphorylation;0.00184029568568786!GO:0003702;RNA polymerase II transcription factor activity;0.00189581342249232!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00191949210986561!GO:0006378;mRNA polyadenylation;0.00192774030932555!GO:0007018;microtubule-based movement;0.00193148249252552!GO:0008312;7S RNA binding;0.00193606062715282!GO:0005875;microtubule associated complex;0.00193606062715282!GO:0008139;nuclear localization sequence binding;0.00194608588569774!GO:0005788;endoplasmic reticulum lumen;0.0019991620927915!GO:0006402;mRNA catabolic process;0.00200080113250275!GO:0008250;oligosaccharyl transferase complex;0.00211351590293077!GO:0005525;GTP binding;0.00215708134617028!GO:0004518;nuclease activity;0.00220719135312526!GO:0019783;small conjugating protein-specific protease activity;0.00232770000919903!GO:0006401;RNA catabolic process;0.00233254407887126!GO:0006730;one-carbon compound metabolic process;0.00235004693261007!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00241204023652308!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00241204023652308!GO:0005770;late endosome;0.00244069976370667!GO:0051087;chaperone binding;0.00253041145822375!GO:0051287;NAD binding;0.00256026028932761!GO:0016563;transcription activator activity;0.00267609620727967!GO:0000910;cytokinesis;0.00272990333645493!GO:0016251;general RNA polymerase II transcription factor activity;0.0027389698265442!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00274885806424743!GO:0046467;membrane lipid biosynthetic process;0.00277156996390465!GO:0043601;nuclear replisome;0.0030676912685066!GO:0030894;replisome;0.0030676912685066!GO:0035258;steroid hormone receptor binding;0.00308195357793675!GO:0000049;tRNA binding;0.00315366927996528!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00315366927996528!GO:0005769;early endosome;0.00319618989044871!GO:0004843;ubiquitin-specific protease activity;0.00324930446257139!GO:0045786;negative regulation of progression through cell cycle;0.0032954813504106!GO:0045454;cell redox homeostasis;0.00330432692315609!GO:0032940;secretion by cell;0.00330432692315609!GO:0009892;negative regulation of metabolic process;0.00337824544854678!GO:0043414;biopolymer methylation;0.00342759041934872!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0035286033256864!GO:0000428;DNA-directed RNA polymerase complex;0.0035286033256864!GO:0031324;negative regulation of cellular metabolic process;0.00356389108848752!GO:0022890;inorganic cation transmembrane transporter activity;0.00359444217545031!GO:0015980;energy derivation by oxidation of organic compounds;0.00362895841717668!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00368734340368967!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00370169170606346!GO:0045047;protein targeting to ER;0.00370169170606346!GO:0006695;cholesterol biosynthetic process;0.0038694707998954!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00398661245996809!GO:0006611;protein export from nucleus;0.00401150417452066!GO:0032200;telomere organization and biogenesis;0.00408547302406959!GO:0000723;telomere maintenance;0.00408547302406959!GO:0048487;beta-tubulin binding;0.00424871178326444!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00432983062534802!GO:0015002;heme-copper terminal oxidase activity;0.00432983062534802!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00432983062534802!GO:0004129;cytochrome-c oxidase activity;0.00432983062534802!GO:0006144;purine base metabolic process;0.00437696414002779!GO:0046914;transition metal ion binding;0.00445469282979133!GO:0004298;threonine endopeptidase activity;0.00448812963411366!GO:0000118;histone deacetylase complex;0.004558885910731!GO:0030132;clathrin coat of coated pit;0.00457095552855047!GO:0000793;condensed chromosome;0.00457095552855047!GO:0008408;3'-5' exonuclease activity;0.00479231878334864!GO:0004221;ubiquitin thiolesterase activity;0.00483404062733!GO:0005663;DNA replication factor C complex;0.00496390476683793!GO:0006891;intra-Golgi vesicle-mediated transport;0.00504641162214288!GO:0003746;translation elongation factor activity;0.00513512808156085!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00514168990569664!GO:0006595;polyamine metabolic process;0.00521802111070031!GO:0044450;microtubule organizing center part;0.00527893342983099!GO:0005885;Arp2/3 protein complex;0.00552418924262009!GO:0030521;androgen receptor signaling pathway;0.00563066285396826!GO:0051539;4 iron, 4 sulfur cluster binding;0.00569275579630525!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00569275579630525!GO:0000178;exosome (RNase complex);0.00581503715045139!GO:0019899;enzyme binding;0.00589828905372914!GO:0030867;rough endoplasmic reticulum membrane;0.00596873948729591!GO:0016790;thiolester hydrolase activity;0.00616127484177696!GO:0009112;nucleobase metabolic process;0.00624284379937467!GO:0006406;mRNA export from nucleus;0.00641504486095739!GO:0006650;glycerophospholipid metabolic process;0.00676457037701205!GO:0008180;signalosome;0.00679162666308507!GO:0005669;transcription factor TFIID complex;0.0069050864074038!GO:0031570;DNA integrity checkpoint;0.0069050864074038!GO:0005521;lamin binding;0.00700895274502687!GO:0000082;G1/S transition of mitotic cell cycle;0.00701800171073258!GO:0005720;nuclear heterochromatin;0.00719318220970097!GO:0051128;regulation of cellular component organization and biogenesis;0.00720763540541492!GO:0006376;mRNA splice site selection;0.00727016065768064!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00727016065768064!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00733921038472307!GO:0043130;ubiquitin binding;0.00755972273609647!GO:0032182;small conjugating protein binding;0.00755972273609647!GO:0009116;nucleoside metabolic process;0.00794347585378688!GO:0030137;COPI-coated vesicle;0.00800514162983448!GO:0051246;regulation of protein metabolic process;0.00809331900375579!GO:0006497;protein amino acid lipidation;0.00845531858688168!GO:0043631;RNA polyadenylation;0.00918111044948663!GO:0006091;generation of precursor metabolites and energy;0.00928735036060232!GO:0016584;nucleosome positioning;0.00932098871972173!GO:0016272;prefoldin complex;0.00934523309070746!GO:0008287;protein serine/threonine phosphatase complex;0.00950446943620956!GO:0000209;protein polyubiquitination;0.00971708915327301!GO:0006505;GPI anchor metabolic process;0.0101557833770319!GO:0005832;chaperonin-containing T-complex;0.0101557833770319!GO:0030384;phosphoinositide metabolic process;0.0104657063229503!GO:0000726;non-recombinational repair;0.0108402158179598!GO:0018196;peptidyl-asparagine modification;0.0108449880235753!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0108449880235753!GO:0005758;mitochondrial intermembrane space;0.0115119860239973!GO:0000781;chromosome, telomeric region;0.0116762433130743!GO:0044430;cytoskeletal part;0.0117001021916952!GO:0005869;dynactin complex;0.0118786439138447!GO:0032561;guanyl ribonucleotide binding;0.0118786439138447!GO:0019001;guanyl nucleotide binding;0.0118786439138447!GO:0006506;GPI anchor biosynthetic process;0.0121194527277174!GO:0042054;histone methyltransferase activity;0.0121444862601796!GO:0031970;organelle envelope lumen;0.0123051399376841!GO:0000152;nuclear ubiquitin ligase complex;0.0128445322805426!GO:0031577;spindle checkpoint;0.0128448729008699!GO:0005652;nuclear lamina;0.0129292619204146!GO:0003730;mRNA 3'-UTR binding;0.0130037806274548!GO:0004532;exoribonuclease activity;0.0130037806274548!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0130037806274548!GO:0030663;COPI coated vesicle membrane;0.0131427345673634!GO:0030126;COPI vesicle coat;0.0131427345673634!GO:0016569;covalent chromatin modification;0.0132596762604619!GO:0016481;negative regulation of transcription;0.0138541205906807!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0140621253634387!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0142883396418911!GO:0000339;RNA cap binding;0.0143564517509807!GO:0051540;metal cluster binding;0.0145030306344569!GO:0051536;iron-sulfur cluster binding;0.0145030306344569!GO:0003887;DNA-directed DNA polymerase activity;0.0148585955184381!GO:0007004;telomere maintenance via telomerase;0.0152789191469823!GO:0030133;transport vesicle;0.0156032756815208!GO:0035267;NuA4 histone acetyltransferase complex;0.0163992797132959!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0165828747921957!GO:0055083;monovalent inorganic anion homeostasis;0.0165828747921957!GO:0055064;chloride ion homeostasis;0.0165828747921957!GO:0030644;cellular chloride ion homeostasis;0.0165828747921957!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0172294085880062!GO:0030119;AP-type membrane coat adaptor complex;0.0172540742412833!GO:0051252;regulation of RNA metabolic process;0.0174547311430863!GO:0030658;transport vesicle membrane;0.0176772957032785!GO:0006607;NLS-bearing substrate import into nucleus;0.0176772957032785!GO:0004523;ribonuclease H activity;0.0176825164454925!GO:0006892;post-Golgi vesicle-mediated transport;0.0177593753166238!GO:0033170;DNA-protein loading ATPase activity;0.0182467589113249!GO:0003689;DNA clamp loader activity;0.0182467589113249!GO:0031901;early endosome membrane;0.0182467589113249!GO:0016279;protein-lysine N-methyltransferase activity;0.0187491223216915!GO:0018024;histone-lysine N-methyltransferase activity;0.0187491223216915!GO:0016278;lysine N-methyltransferase activity;0.0187491223216915!GO:0006220;pyrimidine nucleotide metabolic process;0.0194784996272022!GO:0042770;DNA damage response, signal transduction;0.019746781441487!GO:0030705;cytoskeleton-dependent intracellular transport;0.0208595963763569!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0214649992996918!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0215393188305777!GO:0043284;biopolymer biosynthetic process;0.0219297237946798!GO:0051789;response to protein stimulus;0.0222782931900232!GO:0006986;response to unfolded protein;0.0222782931900232!GO:0019843;rRNA binding;0.0228344910988518!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228786137275371!GO:0030518;steroid hormone receptor signaling pathway;0.0232655754716742!GO:0051297;centrosome organization and biogenesis;0.0232655754716742!GO:0031023;microtubule organizing center organization and biogenesis;0.0232655754716742!GO:0008213;protein amino acid alkylation;0.0232655754716742!GO:0006479;protein amino acid methylation;0.0232655754716742!GO:0030496;midbody;0.0233356831879355!GO:0030131;clathrin adaptor complex;0.0234472166068985!GO:0006301;postreplication repair;0.0234730852689583!GO:0008610;lipid biosynthetic process;0.023559760875276!GO:0005938;cell cortex;0.0235678151222375!GO:0046128;purine ribonucleoside metabolic process;0.0236244183106202!GO:0042278;purine nucleoside metabolic process;0.0236244183106202!GO:0008536;Ran GTPase binding;0.0236244183106202!GO:0016585;chromatin remodeling complex;0.0236754697364326!GO:0031371;ubiquitin conjugating enzyme complex;0.0238238775118538!GO:0043022;ribosome binding;0.0238466133229727!GO:0042158;lipoprotein biosynthetic process;0.024160498081303!GO:0030125;clathrin vesicle coat;0.0241799442045463!GO:0030665;clathrin coated vesicle membrane;0.0241799442045463!GO:0031252;leading edge;0.0247963865003246!GO:0000930;gamma-tubulin complex;0.0248489884997562!GO:0030027;lamellipodium;0.0255992637909766!GO:0007098;centrosome cycle;0.0262828943323008!GO:0000077;DNA damage checkpoint;0.0267358697320051!GO:0000123;histone acetyltransferase complex;0.0269208902463259!GO:0030176;integral to endoplasmic reticulum membrane;0.027623932457824!GO:0032981;mitochondrial respiratory chain complex I assembly;0.027705933304789!GO:0010257;NADH dehydrogenase complex assembly;0.027705933304789!GO:0033108;mitochondrial respiratory chain complex assembly;0.027705933304789!GO:0000805;X chromosome;0.0281587786867049!GO:0001740;Barr body;0.0281587786867049!GO:0043189;H4/H2A histone acetyltransferase complex;0.0281901327127656!GO:0006007;glucose catabolic process;0.0282686810776529!GO:0043624;cellular protein complex disassembly;0.0287636295360415!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0293178359753591!GO:0007021;tubulin folding;0.0294317727456182!GO:0030660;Golgi-associated vesicle membrane;0.0294317727456182!GO:0016835;carbon-oxygen lyase activity;0.0294444235713568!GO:0006541;glutamine metabolic process;0.0297856805806512!GO:0008143;poly(A) binding;0.0299389275454014!GO:0019206;nucleoside kinase activity;0.0301168471155548!GO:0046966;thyroid hormone receptor binding;0.0303868920737712!GO:0051320;S phase;0.0306979118311706!GO:0016197;endosome transport;0.0310384664239096!GO:0005487;nucleocytoplasmic transporter activity;0.0310653916688135!GO:0005658;alpha DNA polymerase:primase complex;0.0313806088156026!GO:0000084;S phase of mitotic cell cycle;0.0319750794335111!GO:0050178;phenylpyruvate tautomerase activity;0.0320812822170288!GO:0042802;identical protein binding;0.0324723538574974!GO:0042769;DNA damage response, detection of DNA damage;0.032847972574729!GO:0051656;establishment of organelle localization;0.032847972574729!GO:0031902;late endosome membrane;0.0330507275479861!GO:0005784;translocon complex;0.0338384046690657!GO:0009124;nucleoside monophosphate biosynthetic process;0.034552332788305!GO:0009123;nucleoside monophosphate metabolic process;0.034552332788305!GO:0008097;5S rRNA binding;0.0345860240371819!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0353584518961154!GO:0042026;protein refolding;0.0354355764910532!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0362518961144076!GO:0005680;anaphase-promoting complex;0.0363532066373744!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0365338900335727!GO:0047485;protein N-terminus binding;0.0368641262701184!GO:0009303;rRNA transcription;0.0369413504875716!GO:0000086;G2/M transition of mitotic cell cycle;0.0381404652379227!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0382394476920884!GO:0006275;regulation of DNA replication;0.0388517051664265!GO:0007019;microtubule depolymerization;0.0395377813796212!GO:0003725;double-stranded RNA binding;0.0397352840154307!GO:0033116;ER-Golgi intermediate compartment membrane;0.0422145254658436!GO:0000803;sex chromosome;0.0422145254658436!GO:0001739;sex chromatin;0.0422145254658436!GO:0030911;TPR domain binding;0.0424454775635073!GO:0001832;blastocyst growth;0.0432401040113543!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0432401040113543!GO:0031625;ubiquitin protein ligase binding;0.043774427577422!GO:0016570;histone modification;0.0442625622432028!GO:0012501;programmed cell death;0.0455952629235973!GO:0030135;coated vesicle;0.0457478882900013!GO:0022406;membrane docking;0.0459691802589453!GO:0048278;vesicle docking;0.0459691802589453!GO:0005881;cytoplasmic microtubule;0.0468136687922108!GO:0046112;nucleobase biosynthetic process;0.0472362088147875!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0479024951057463!GO:0032984;macromolecular complex disassembly;0.0493473552893445
|sample_id=10843
|sample_id=10843
|sample_note=
|sample_note=
Line 76: Line 102:
|sample_tissue=skin
|sample_tissue=skin
|top_motifs=POU6F1:3.69163208245;NANOG:3.43252468768;NKX2-3_NKX2-5:2.56793325908;BREu{core}:2.51708414314;E2F1..5:2.48277855737;ADNP_IRX_SIX_ZHX:2.41260920252;TFDP1:2.34113332559;POU1F1:2.33195720848;NFY{A,B,C}:2.25534329513;MYOD1:2.18330820554;LMO2:1.9945859458;NRF1:1.86164993992;FOXQ1:1.85369465812;POU3F1..4:1.832739856;STAT5{A,B}:1.80761012545;SOX{8,9,10}:1.76063104519;TEF:1.61473154478;FOXM1:1.49827732829;YY1:1.46985458834;PDX1:1.46263073569;AHR_ARNT_ARNT2:1.40189109822;ZNF143:1.39159341737;NKX6-1,2:1.33208690801;LHX3,4:1.32269402212;SNAI1..3:1.29741531829;PAX6:1.26872936126;GFI1:1.24716829116;ONECUT1,2:1.22256150421;RBPJ:1.19974040649;PITX1..3:1.16455861361;HOX{A4,D4}:1.14752157016;ZEB1:1.14185262997;DBP:1.12609536937;POU2F1..3:1.10951660327;EVI1:1.10206540895;HOXA9_MEIS1:1.03485472124;PAX5:1.00868094893;AIRE:0.904485228115;SOX17:0.896141473842;ELK1,4_GABP{A,B1}:0.886849016268;MYB:0.87820085342;PBX1:0.860623097114;FOXD3:0.857678563861;PAX3,7:0.85640443753;PAX1,9:0.849087117455;PRRX1,2:0.8405608227;SOX5:0.826235623061;ESRRA:0.805288339724;ZFP161:0.778514661543;RFX2..5_RFXANK_RFXAP:0.727611701886;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724771787614;FOXP1:0.720739933648;NR1H4:0.697678027345;NKX2-1,4:0.686895496604;STAT1,3:0.683906085104;ZIC1..3:0.65582987438;GFI1B:0.628234127961;CRX:0.621282947209;ZBTB16:0.589007631719;NR6A1:0.582087980533;MZF1:0.575862867338;PAX8:0.570939187466;TOPORS:0.547076360111;KLF4:0.530300631258;ZBTB6:0.528474576196;UFEwm:0.502596278628;ATF4:0.497286722444;CUX2:0.492544374796;TFAP2B:0.487499081143;FOXL1:0.474867689874;FOXA2:0.442888838341;T:0.424143001329;REST:0.412788223935;MED-1{core}:0.401912383665;POU5F1:0.391523424914;CDX1,2,4:0.380259874809;TGIF1:0.374704223085;RFX1:0.369237694384;ZNF423:0.359977715214;NKX3-1:0.35644105735;EGR1..3:0.344410105222;OCT4_SOX2{dimer}:0.332117342407;FOXN1:0.311673411438;IKZF2:0.304328769033;PATZ1:0.293290140159;AR:0.292555174406;BPTF:0.275271779862;HAND1,2:0.253119459542;TAL1_TCF{3,4,12}:0.248631548401;ZNF384:0.222083307506;PPARG:0.216384216243;PAX4:0.2087246761;FOX{F1,F2,J1}:0.207230844927;XCPE1{core}:0.187045218876;NR5A1,2:0.179260580794;RORA:0.160572289611;ATF5_CREB3:0.15825752657;NFE2L1:0.155532288417;bHLH_family:0.143560910587;RREB1:0.107448525189;HOX{A6,A7,B6,B7}:0.0997231882611;HES1:0.0827148223911;LEF1_TCF7_TCF7L1,2:0.0674961808387;NFIL3:0.0511862460966;GATA4:0.0425684405336;HIC1:-0.0220507915377;MTE{core}:-0.0294472423155;PRDM1:-0.0599985825726;MTF1:-0.063742058695;MYFfamily:-0.0955454881431;GCM1,2:-0.102015817227;SPZ1:-0.130499175357;FOXP3:-0.177410777725;GATA6:-0.190792206923;HNF1A:-0.206630220707;ARID5B:-0.212061601227;ALX4:-0.214255946104;HMGA1,2:-0.224641099568;HOX{A5,B5}:-0.226648033933;NKX2-2,8:-0.230024045396;HSF1,2:-0.267392211736;SOX2:-0.27650844262;GTF2I:-0.339677116029;CDC5L:-0.380377885599;CREB1:-0.391408417591;NKX3-2:-0.423242627251;RUNX1..3:-0.46519502175;MEF2{A,B,C,D}:-0.471929973614;TP53:-0.485997754669;JUN:-0.504525924393;FOX{D1,D2}:-0.513853996386;RXR{A,B,G}:-0.523039468748;EN1,2:-0.54971838345;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.567401393503;SREBF1,2:-0.578381501717;HBP1_HMGB_SSRP1_UBTF:-0.589537066152;IKZF1:-0.620014490725;TBX4,5:-0.642945271182;TLX1..3_NFIC{dimer}:-0.649618931578;NFKB1_REL_RELA:-0.65557412781;SPI1:-0.661573826186;DMAP1_NCOR{1,2}_SMARC:-0.665613384798;FOSL2:-0.684667386975;BACH2:-0.719039352449;FOXO1,3,4:-0.738644518715;HNF4A_NR2F1,2:-0.738736369075;GTF2A1,2:-0.785479377996;SPIB:-0.787250681552;NHLH1,2:-0.8117037259;FOS_FOS{B,L1}_JUN{B,D}:-0.821391306078;NFE2:-0.846338861174;NFIX:-0.854119073543;EBF1:-0.90011783618;PAX2:-0.908875226257;VSX1,2:-0.937344140507;ATF2:-0.992242157196;NR3C1:-1.0238857301;GZF1:-1.02565281064;HLF:-1.0349672853;NFE2L2:-1.09392289637;TFAP4:-1.11364665967;ZNF238:-1.11556378552;TEAD1:-1.11600768648;MAZ:-1.1322347807;ELF1,2,4:-1.14655176582;SMAD1..7,9:-1.2120866795;ALX1:-1.21504339429;HIF1A:-1.23549079891;IRF7:-1.24288663631;FOX{I1,J2}:-1.24699367968;NANOG{mouse}:-1.26258521464;XBP1:-1.27223780793;ATF6:-1.31963784074;ETS1,2:-1.32012766887;ZNF148:-1.33538566283;ESR1:-1.34430594231;MYBL2:-1.35124791054;TBP:-1.37233202548;CEBPA,B_DDIT3:-1.3906986315;SP1:-1.4330699201;RXRA_VDR{dimer}:-1.43518741179;GLI1..3:-1.44918176028;IRF1,2:-1.47515891704;HMX1:-1.50719840339;NFATC1..3:-1.52037058798;TLX2:-1.54670504109;EP300:-1.58718072272;MAFB:-1.61332223309;TFCP2:-1.83709849028;TFAP2{A,C}:-1.90693881227;STAT2,4,6:-2.02758553786;SRF:-2.20502855927
|top_motifs=POU6F1:3.69163208245;NANOG:3.43252468768;NKX2-3_NKX2-5:2.56793325908;BREu{core}:2.51708414314;E2F1..5:2.48277855737;ADNP_IRX_SIX_ZHX:2.41260920252;TFDP1:2.34113332559;POU1F1:2.33195720848;NFY{A,B,C}:2.25534329513;MYOD1:2.18330820554;LMO2:1.9945859458;NRF1:1.86164993992;FOXQ1:1.85369465812;POU3F1..4:1.832739856;STAT5{A,B}:1.80761012545;SOX{8,9,10}:1.76063104519;TEF:1.61473154478;FOXM1:1.49827732829;YY1:1.46985458834;PDX1:1.46263073569;AHR_ARNT_ARNT2:1.40189109822;ZNF143:1.39159341737;NKX6-1,2:1.33208690801;LHX3,4:1.32269402212;SNAI1..3:1.29741531829;PAX6:1.26872936126;GFI1:1.24716829116;ONECUT1,2:1.22256150421;RBPJ:1.19974040649;PITX1..3:1.16455861361;HOX{A4,D4}:1.14752157016;ZEB1:1.14185262997;DBP:1.12609536937;POU2F1..3:1.10951660327;EVI1:1.10206540895;HOXA9_MEIS1:1.03485472124;PAX5:1.00868094893;AIRE:0.904485228115;SOX17:0.896141473842;ELK1,4_GABP{A,B1}:0.886849016268;MYB:0.87820085342;PBX1:0.860623097114;FOXD3:0.857678563861;PAX3,7:0.85640443753;PAX1,9:0.849087117455;PRRX1,2:0.8405608227;SOX5:0.826235623061;ESRRA:0.805288339724;ZFP161:0.778514661543;RFX2..5_RFXANK_RFXAP:0.727611701886;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724771787614;FOXP1:0.720739933648;NR1H4:0.697678027345;NKX2-1,4:0.686895496604;STAT1,3:0.683906085104;ZIC1..3:0.65582987438;GFI1B:0.628234127961;CRX:0.621282947209;ZBTB16:0.589007631719;NR6A1:0.582087980533;MZF1:0.575862867338;PAX8:0.570939187466;TOPORS:0.547076360111;KLF4:0.530300631258;ZBTB6:0.528474576196;UFEwm:0.502596278628;ATF4:0.497286722444;CUX2:0.492544374796;TFAP2B:0.487499081143;FOXL1:0.474867689874;FOXA2:0.442888838341;T:0.424143001329;REST:0.412788223935;MED-1{core}:0.401912383665;POU5F1:0.391523424914;CDX1,2,4:0.380259874809;TGIF1:0.374704223085;RFX1:0.369237694384;ZNF423:0.359977715214;NKX3-1:0.35644105735;EGR1..3:0.344410105222;OCT4_SOX2{dimer}:0.332117342407;FOXN1:0.311673411438;IKZF2:0.304328769033;PATZ1:0.293290140159;AR:0.292555174406;BPTF:0.275271779862;HAND1,2:0.253119459542;TAL1_TCF{3,4,12}:0.248631548401;ZNF384:0.222083307506;PPARG:0.216384216243;PAX4:0.2087246761;FOX{F1,F2,J1}:0.207230844927;XCPE1{core}:0.187045218876;NR5A1,2:0.179260580794;RORA:0.160572289611;ATF5_CREB3:0.15825752657;NFE2L1:0.155532288417;bHLH_family:0.143560910587;RREB1:0.107448525189;HOX{A6,A7,B6,B7}:0.0997231882611;HES1:0.0827148223911;LEF1_TCF7_TCF7L1,2:0.0674961808387;NFIL3:0.0511862460966;GATA4:0.0425684405336;HIC1:-0.0220507915377;MTE{core}:-0.0294472423155;PRDM1:-0.0599985825726;MTF1:-0.063742058695;MYFfamily:-0.0955454881431;GCM1,2:-0.102015817227;SPZ1:-0.130499175357;FOXP3:-0.177410777725;GATA6:-0.190792206923;HNF1A:-0.206630220707;ARID5B:-0.212061601227;ALX4:-0.214255946104;HMGA1,2:-0.224641099568;HOX{A5,B5}:-0.226648033933;NKX2-2,8:-0.230024045396;HSF1,2:-0.267392211736;SOX2:-0.27650844262;GTF2I:-0.339677116029;CDC5L:-0.380377885599;CREB1:-0.391408417591;NKX3-2:-0.423242627251;RUNX1..3:-0.46519502175;MEF2{A,B,C,D}:-0.471929973614;TP53:-0.485997754669;JUN:-0.504525924393;FOX{D1,D2}:-0.513853996386;RXR{A,B,G}:-0.523039468748;EN1,2:-0.54971838345;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.567401393503;SREBF1,2:-0.578381501717;HBP1_HMGB_SSRP1_UBTF:-0.589537066152;IKZF1:-0.620014490725;TBX4,5:-0.642945271182;TLX1..3_NFIC{dimer}:-0.649618931578;NFKB1_REL_RELA:-0.65557412781;SPI1:-0.661573826186;DMAP1_NCOR{1,2}_SMARC:-0.665613384798;FOSL2:-0.684667386975;BACH2:-0.719039352449;FOXO1,3,4:-0.738644518715;HNF4A_NR2F1,2:-0.738736369075;GTF2A1,2:-0.785479377996;SPIB:-0.787250681552;NHLH1,2:-0.8117037259;FOS_FOS{B,L1}_JUN{B,D}:-0.821391306078;NFE2:-0.846338861174;NFIX:-0.854119073543;EBF1:-0.90011783618;PAX2:-0.908875226257;VSX1,2:-0.937344140507;ATF2:-0.992242157196;NR3C1:-1.0238857301;GZF1:-1.02565281064;HLF:-1.0349672853;NFE2L2:-1.09392289637;TFAP4:-1.11364665967;ZNF238:-1.11556378552;TEAD1:-1.11600768648;MAZ:-1.1322347807;ELF1,2,4:-1.14655176582;SMAD1..7,9:-1.2120866795;ALX1:-1.21504339429;HIF1A:-1.23549079891;IRF7:-1.24288663631;FOX{I1,J2}:-1.24699367968;NANOG{mouse}:-1.26258521464;XBP1:-1.27223780793;ATF6:-1.31963784074;ETS1,2:-1.32012766887;ZNF148:-1.33538566283;ESR1:-1.34430594231;MYBL2:-1.35124791054;TBP:-1.37233202548;CEBPA,B_DDIT3:-1.3906986315;SP1:-1.4330699201;RXRA_VDR{dimer}:-1.43518741179;GLI1..3:-1.44918176028;IRF1,2:-1.47515891704;HMX1:-1.50719840339;NFATC1..3:-1.52037058798;TLX2:-1.54670504109;EP300:-1.58718072272;MAFB:-1.61332223309;TFCP2:-1.83709849028;TFAP2{A,C}:-1.90693881227;STAT2,4,6:-2.02758553786;SRF:-2.20502855927
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10843-111E6;search_select_hide=table117:FF:10843-111E6
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:merkel cell carcinoma cell line:MKL-1
Species:Human (Homo sapiens)
Library ID:CNhs12838
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
age26
cell typemerkel cell
cell lineMKL-1
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005532
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12838 CAGE DRX007933 DRR008805
Accession ID Hg19

Library idBAMCTSS
CNhs12838 DRZ000230 DRZ001615
Accession ID Hg38

Library idBAMCTSS
CNhs12838 DRZ011580 DRZ012965
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005532
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10092 RNA-Seq DRX057149 DRR062908
Accession ID Hg19

Library idBAMCTSS
RDhi10092 DRZ007984


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.362
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.657
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small1.305
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0.381
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0596
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.406
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.558
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.554
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0332
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.785
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.167
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.458
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0441
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0834
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.625
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.142
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12838

Jaspar motifP-value
MA0002.23.11563e-5
MA0003.10.21
MA0004.10.634
MA0006.10.153
MA0007.10.323
MA0009.10.671
MA0014.10.75
MA0017.10.00608
MA0018.20.13
MA0019.10.885
MA0024.14.66447e-13
MA0025.10.93
MA0027.10.828
MA0028.10.392
MA0029.10.788
MA0030.10.826
MA0031.10.231
MA0035.20.47
MA0038.10.151
MA0039.20.0485
MA0040.10.359
MA0041.10.241
MA0042.10.0895
MA0043.10.661
MA0046.10.0444
MA0047.20.0133
MA0048.10.743
MA0050.13.92007e-11
MA0051.11.50413e-6
MA0052.11.32402e-4
MA0055.10.657
MA0057.10.151
MA0058.10.816
MA0059.10.577
MA0060.11.10234e-17
MA0061.10.00211
MA0062.20.622
MA0065.20.245
MA0066.10.309
MA0067.10.866
MA0068.10.206
MA0069.10.544
MA0070.10.0101
MA0071.10.43
MA0072.10.877
MA0073.10.607
MA0074.10.29
MA0076.10.0776
MA0077.10.0102
MA0078.10.705
MA0079.20.694
MA0080.28.26096e-12
MA0081.10.0252
MA0083.11.47144e-7
MA0084.10.771
MA0087.10.684
MA0088.10.484
MA0090.18.91919e-4
MA0091.10.468
MA0092.10.23
MA0093.10.625
MA0099.21.04644e-21
MA0100.10.147
MA0101.10.00115
MA0102.22.82999e-5
MA0103.10.00994
MA0104.20.0635
MA0105.10.0382
MA0106.10.31
MA0107.12.72158e-4
MA0108.21.01355e-5
MA0111.10.881
MA0112.20.00161
MA0113.10.00263
MA0114.10.0731
MA0115.10.106
MA0116.10.157
MA0117.10.558
MA0119.10.503
MA0122.10.369
MA0124.10.536
MA0125.10.232
MA0131.10.566
MA0135.10.972
MA0136.12.98356e-10
MA0137.25.61913e-5
MA0138.20.0985
MA0139.10.402
MA0140.10.336
MA0141.10.203
MA0142.10.111
MA0143.10.932
MA0144.11.62374e-4
MA0145.10.0455
MA0146.10.185
MA0147.10.127
MA0148.10.0237
MA0149.10.175
MA0150.16.96985e-6
MA0152.10.985
MA0153.10.0571
MA0154.10.053
MA0155.10.28
MA0156.12.15869e-6
MA0157.10.297
MA0159.10.117
MA0160.10.18
MA0162.10.217
MA0163.10.206
MA0164.10.482
MA0258.10.109
MA0259.10.155



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12838

Novel motifP-value
10.753
100.596
1000.704
1010.375
1020.63
1030.75
1040.662
1050.141
1064.82172e-4
1070.0119
1080.979
1090.0962
110.385
1100.809
1110.59
1120.157
1130.457
1140.0985
1150.118
1160.738
1170.765
1180.455
1190.346
120.543
1200.798
1210.466
1220.844
1230.156
1240.351
1250.144
1260.288
1270.199
1280.0277
1290.49
130.577
1300.993
1310.0848
1320.549
1330.06
1340.568
1350.00569
1360.597
1370.439
1380.228
1390.0351
140.304
1400.923
1410.753
1420.74
1430.147
1440.185
1450.308
1460.748
1470.704
1480.169
1490.0117
150.372
1500.545
1510.347
1520.0102
1530.104
1540.849
1550.473
1560.702
1570.668
1580.544
1590.328
160.261
1600.45
1610.978
1620.783
1630.275
1640.239
1650.49
1660.602
1670.326
1680.0729
1690.0248
170.305
180.281
190.0846
20.14
200.556
210.229
220.0605
230.00511
240.371
250.995
260.803
270.332
280.976
290.896
30.066
300.21
310.674
320.012
330.573
340.196
350.878
360.73
370.0605
380.739
390.257
40.304
400.188
410.213
420.185
430.168
440.83
450.23
460.751
470.904
480.716
490.419
50.087
500.148
510.419
520.162
530.362
540.133
550.108
560.49
570.837
580.345
590.0865
60.668
600.0155
610.58
620.205
630.16
640.847
650.207
660.119
670.747
680.886
690.455
70.408
700.26
710.313
720.221
730.0106
740.686
750.325
760.781
770.0634
780.943
790.206
80.552
800.0172
810.447
820.321
830.083
840.664
850.00732
860.384
870.785
880.839
890.0956
90.107
900.546
910.299
920.0987
930.239
940.301
950.223
960.204
970.917
980.905
990.619



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12838


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

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