FF:10844-111E7: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	merkel cell carcinoma cell line:MS-1
Species:	Human (Homo sapiens)
Library ID:	CNhs12839
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	unknown
age	unknown
cell type	merkel cell
cell line	MS-1
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005928

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12839		CAGE		DRX007934		DRR008806

Accession ID Hg19

Library id		BAM		CTSS
CNhs12839		DRZ000231		DRZ001616

Accession ID Hg38

Library id		BAM		CTSS
CNhs12839		DRZ011581		DRZ012966

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0588
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0732
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.538
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0.599
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0.946
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0934
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.111
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0143
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.749
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.157
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.199
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00427
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0063
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.656
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0.0588
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12839

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.57561e-6
MA0003.1	MA0003.1	0.208
MA0004.1	MA0004.1	0.507
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.298
MA0009.1	MA0009.1	0.211
MA0014.1	MA0014.1	0.984
MA0017.1	MA0017.1	0.00422
MA0018.2	MA0018.2	9.33916e-4
MA0019.1	MA0019.1	0.796
MA0024.1	MA0024.1	4.91116e-7
MA0025.1	MA0025.1	0.201
MA0027.1	MA0027.1	0.511
MA0028.1	MA0028.1	0.131
MA0029.1	MA0029.1	0.655
MA0030.1	MA0030.1	0.26
MA0031.1	MA0031.1	0.912
MA0035.2	MA0035.2	0.435
MA0038.1	MA0038.1	0.0105
MA0039.2	MA0039.2	0.617
MA0040.1	MA0040.1	0.859
MA0041.1	MA0041.1	0.319
MA0042.1	MA0042.1	0.24
MA0043.1	MA0043.1	0.144
MA0046.1	MA0046.1	0.711
MA0047.2	MA0047.2	0.218
MA0048.1	MA0048.1	0.392
MA0050.1	MA0050.1	4.82299e-12
MA0051.1	MA0051.1	2.14574e-5
MA0052.1	MA0052.1	0.179
MA0055.1	MA0055.1	0.909
MA0057.1	MA0057.1	0.163
MA0058.1	MA0058.1	0.482
MA0059.1	MA0059.1	0.58
MA0060.1	MA0060.1	2.04764e-21
MA0061.1	MA0061.1	0.00349
MA0062.2	MA0062.2	0.0444
MA0065.2	MA0065.2	0.00412
MA0066.1	MA0066.1	0.0929
MA0067.1	MA0067.1	0.6
MA0068.1	MA0068.1	0.0612
MA0069.1	MA0069.1	0.0921
MA0070.1	MA0070.1	7.85497e-4
MA0071.1	MA0071.1	0.341
MA0072.1	MA0072.1	0.699
MA0073.1	MA0073.1	0.593
MA0074.1	MA0074.1	0.16
MA0076.1	MA0076.1	0.0126
MA0077.1	MA0077.1	2.25282e-4
MA0078.1	MA0078.1	0.481
MA0079.2	MA0079.2	0.85
MA0080.2	MA0080.2	3.96338e-11
MA0081.1	MA0081.1	0.0388
MA0083.1	MA0083.1	5.09838e-4
MA0084.1	MA0084.1	0.594
MA0087.1	MA0087.1	0.822
MA0088.1	MA0088.1	0.768
MA0090.1	MA0090.1	0.00124
MA0091.1	MA0091.1	0.436
MA0092.1	MA0092.1	0.24
MA0093.1	MA0093.1	0.408
MA0099.2	MA0099.2	3.13198e-14
MA0100.1	MA0100.1	0.264
MA0101.1	MA0101.1	0.0083
MA0102.2	MA0102.2	0.0395
MA0103.1	MA0103.1	0.061
MA0104.2	MA0104.2	0.0897
MA0105.1	MA0105.1	0.00286
MA0106.1	MA0106.1	0.278
MA0107.1	MA0107.1	0.0029
MA0108.2	MA0108.2	0.934
MA0111.1	MA0111.1	0.528
MA0112.2	MA0112.2	1.13425e-4
MA0113.1	MA0113.1	0.00569
MA0114.1	MA0114.1	0.0268
MA0115.1	MA0115.1	0.86
MA0116.1	MA0116.1	0.0139
MA0117.1	MA0117.1	0.953
MA0119.1	MA0119.1	0.188
MA0122.1	MA0122.1	0.428
MA0124.1	MA0124.1	0.556
MA0125.1	MA0125.1	0.0159
MA0131.1	MA0131.1	0.519
MA0135.1	MA0135.1	0.249
MA0136.1	MA0136.1	7.06913e-7
MA0137.2	MA0137.2	0.0242
MA0138.2	MA0138.2	0.311
MA0139.1	MA0139.1	0.324
MA0140.1	MA0140.1	0.0855
MA0141.1	MA0141.1	0.0331
MA0142.1	MA0142.1	0.36
MA0143.1	MA0143.1	0.819
MA0144.1	MA0144.1	0.0119
MA0145.1	MA0145.1	0.0938
MA0146.1	MA0146.1	0.0934
MA0147.1	MA0147.1	0.185
MA0148.1	MA0148.1	0.228
MA0149.1	MA0149.1	0.0115
MA0150.1	MA0150.1	1.90783e-4
MA0152.1	MA0152.1	0.648
MA0153.1	MA0153.1	0.105
MA0154.1	MA0154.1	0.05
MA0155.1	MA0155.1	0.345
MA0156.1	MA0156.1	0.013
MA0157.1	MA0157.1	0.539
MA0159.1	MA0159.1	0.0188
MA0160.1	MA0160.1	0.0464
MA0162.1	MA0162.1	0.215
MA0163.1	MA0163.1	6.39084e-4
MA0164.1	MA0164.1	0.631
MA0258.1	MA0258.1	0.0194
MA0259.1	MA0259.1	0.285

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12839

Novel motif	Logo	P-value
1	1	0.0853
10	10	0.125
100	100	0.704
101	101	0.268
102	102	0.583
103	103	0.086
104	104	0.532
105	105	0.54
106	106	0.00178
107	107	0.0433
108	108	0.657
109	109	0.0337
11	11	0.0651
110	110	0.382
111	111	0.157
112	112	0.124
113	113	0.708
114	114	0.0162
115	115	0.531
116	116	0.416
117	117	0.197
118	118	0.37
119	119	0.269
12	12	0.856
120	120	0.778
121	121	0.655
122	122	0.495
123	123	0.713
124	124	0.448
125	125	0.913
126	126	0.187
127	127	0.198
128	128	0.0144
129	129	0.334
13	13	0.197
130	130	0.569
131	131	0.174
132	132	0.811
133	133	0.606
134	134	0.792
135	135	0.07
136	136	0.899
137	137	0.31
138	138	0.212
139	139	0.126
14	14	0.662
140	140	0.272
141	141	0.692
142	142	0.276
143	143	0.0142
144	144	0.577
145	145	0.117
146	146	0.966
147	147	0.788
148	148	0.0545
149	149	0.0184
15	15	0.167
150	150	0.626
151	151	0.333
152	152	0.0166
153	153	0.206
154	154	0.797
155	155	0.913
156	156	0.984
157	157	0.35
158	158	0.813
159	159	0.834
16	16	0.104
160	160	0.379
161	161	0.493
162	162	0.885
163	163	0.238
164	164	0.123
165	165	0.0855
166	166	0.622
167	167	0.352
168	168	0.0499
169	169	0.00953
17	17	0.21
18	18	0.227
19	19	0.0506
2	2	0.412
20	20	0.906
21	21	0.0928
22	22	0.0882
23	23	0.00635
24	24	0.293
25	25	0.868
26	26	0.244
27	27	0.489
28	28	0.888
29	29	0.452
3	3	0.0308
30	30	0.747
31	31	0.375
32	32	0.00255
33	33	0.412
34	34	0.408
35	35	0.641
36	36	0.652
37	37	0.0472
38	38	0.44
39	39	0.244
4	4	0.717
40	40	0.48
41	41	0.331
42	42	0.257
43	43	0.106
44	44	0.332
45	45	0.382
46	46	0.238
47	47	0.363
48	48	0.269
49	49	0.194
5	5	0.0978
50	50	0.216
51	51	0.4
52	52	0.156
53	53	0.448
54	54	0.173
55	55	0.0194
56	56	0.559
57	57	0.548
58	58	0.345
59	59	0.0663
6	6	0.439
60	60	0.013
61	61	0.366
62	62	0.114
63	63	0.0812
64	64	0.753
65	65	0.173
66	66	0.466
67	67	0.934
68	68	0.819
69	69	0.873
7	7	0.391
70	70	0.0286
71	71	0.075
72	72	0.25
73	73	0.0134
74	74	0.247
75	75	0.0808
76	76	0.577
77	77	0.109
78	78	0.263
79	79	0.0522
8	8	0.167
80	80	0.064
81	81	0.256
82	82	0.0853
83	83	0.547
84	84	0.552
85	85	0.00701
86	86	0.291
87	87	0.429
88	88	0.873
89	89	0.0679
9	9	0.339
90	90	0.0717
91	91	0.126
92	92	0.0444
93	93	0.918
94	94	0.0924
95	95	0.131
96	96	0.162
97	97	0.87
98	98	0.222
99	99	0.646

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12839

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000242 Merkel cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005928
+|accession_numbers=CAGE;DRX007934;DRR008806;DRZ000231;DRZ001616;DRZ011581;DRZ012966
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002319,CL:0000095,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000123,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0000242
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:20348740..20348757,+!p1@INSM1!2.67!464.04!INSM1;;chr10:50604121..50604142,-!p1@DRGX!2.42!262.89!DRGX;;chr1:160336851..160336868,+!p1@NHLH1!2.40!252.31!NHLH1;;chr2:239148671..239148686,-!p1@HES6!2.29!682.00!HES6;;chr13:72441315..72441454,-!p1@DACH1!2.27!360.71!DACH1;;chr4:94749897..94749909,+!p1@ATOH1!2.27!183.33!ATOH1;;chr5:145718398..145718410,+!p1@POU4F3!2.15!139.56!POU4F3;;chr3:181429704..181429722,+!p1@SOX2!2.14!138.25!SOX2;;chrX:85403445..85403479,+!p2@DACH2!2.03!106.95!DACH2;;chr5:50679228..50679288,+!p1@ISL1!2.00!98.26!ISL1;;chr13:79177674..79177701,-!p1@POU4F1!1.93!85.07!POU4F1;;chr7:96654133..96654150,-!p1@DLX5!1.93!83.33!DLX5;;chr17:37764128..37764258,-!p1@NEUROD2!1.91!80.29!NEUROD2;;chr5:170736243..170736279,+!p1@TLX3!1.90!78.69!TLX3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.55!IRX2;;chr7:156803329..156803362,-!p1@MNX1!1.84!67.82!MNX1;;chr4:113437332..113437337,-!p1@NEUROG2!1.83!66.66!NEUROG2;;chr12:54785074..54785122,-!p2@ZNF385A!1.82!97.97!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.82!72.75!ZNF385A;;chr13:72441074..72441172,-!p2@DACH1!1.78!59.85!DACH1;;chr6:10415484..10415508,-!p3@TFAP2A!1.77!57.39!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.75!61.16!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.05!PROX1;;chr3:181429741..181429767,+!p2@SOX2!1.74!54.20!SOX2;;chr1:216896752..216896778,-!p1@ESRRG!1.71!50.87!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.69!63.19!PRDM8;;chr9:139094988..139095012,-!p1@LHX3!1.67!46.08!LHX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.67!45.94!PEG3;;chr1:3607228..3607250,+!p8@TP73!1.66!44.64!TP73;;chr8:53166899..53166914,-!p3@ST18!1.66!44.35!ST18;;chr1:3569072..3569093,+!p1@TP73!1.65!43.48!TP73;;chr1:92949331..92949377,-!p2@GFI1!1.65!43.33!GFI1;;chr2:5832508..5832524,+!p1@SOX11!1.64!42.75!SOX11;;chr11:63684602..63684664,-!p1@RCOR2!1.63!80.14!RCOR2;;chr6:50786591..50786614,+!p1@TFAP2B!1.61!39.85!TFAP2B;;chr15:57511609..57511651,+!p2@TCF12!1.60!63.91!TCF12;;chr1:41827095..41827155,+!p1@FOXO6!1.59!50.87!FOXO6;;chr8:65492915..65492932,+!p1@BHLHE22!1.59!37.82!BHLHE22;;chr7:1272522..1272537,+!p2@UNCX!1.59!37.68!UNCX;;chr17:48072574..48072597,-!p1@DLX3!1.58!37.39!DLX3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!37.10!POU3F3;;chr6:10412600..10412637,-!p1@TFAP2A!1.56!58.26!TFAP2A;;chr1:10856665..10856683,-!p4@CASZ1!1.55!34.49!CASZ1;;chr2:2334997..2335053,-!p1@MYT1L!1.54!33.48!MYT1L;;chr1:197886461..197886558,+!p1@LHX9!1.53!33.04!LHX9;;chr4:111544219..111544240,-!p1@PITX2!1.52!31.88!PITX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.67!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.49!29.56!HES2;;chr15:76629123..76629151,+!p1@ISL2!1.48!32.17!ISL2;;chr5:145718596..145718607,+!p2@POU4F3!1.47!28.69!POU4F3;;chr12:103351444..103351461,+!p1@ASCL1!1.47!28.55!ASCL1;;chr18:55102598..55102623,+!p1@ONECUT2!1.47!28.26!ONECUT2;;chr1:10856639..10856662,-!p2@CASZ1!1.47!28.26!CASZ1;;chrX:131624056..131624069,-!p2@MBNL3!1.44!35.94!MBNL3;;chr17:46703687..46703740,-!p1@HOXB9!1.44!26.38!HOXB9;;chr2:95963052..95963106,+!p1@KCNIP3!1.43!26.09!KCNIP3;;chr1:2461692..2461710,-!p1@HES5!1.41!24.64!HES5;;chr6:19837592..19837621,+!p1@ID4!1.39!138.69!ID4;;chr18:55102628..55102646,+!p2@ONECUT2!1.39!23.77!ONECUT2;;chr9:139096968..139096979,-!p2@LHX3!1.39!23.62!LHX3;;chr11:20182017..20182023,-!p1@DBX1!1.36!22.17!DBX1;;chr1:23857698..23857733,-!p1@E2F2!1.35!38.69!E2F2;;chr1:151032922..151032951,+!p2@MLLT11!1.34!34.20!MLLT11;;chr2:219849012..219849065,-!p1@FEV!1.34!20.72!FEV;;chr6:10412392..10412409,-!p4@TFAP2A!1.30!21.74!TFAP2A;;chr5:170736216..170736238,+!p2@TLX3!1.28!18.26!TLX3;;chr7:96634878..96634900,+!p2@DLX6!1.28!18.26!DLX6;;chr1:160336929..160336938,+!p2@NHLH1!1.28!18.26!NHLH1;;chr7:27205136..27205164,-!p1@HOXA9!1.27!17.68!HOXA9;;chr7:1272500..1272513,+!p1@UNCX!1.27!17.54!UNCX;;chr6:50789717..50789729,+!p4@TFAP2B!1.26!17.39!TFAP2B;;chr10:131762504..131762555,-!p1@EBF3!1.26!17.39!EBF3;;chr7:96635178..96635181,+!p1@DLX6!1.25!16.96!DLX6;;chr3:40547564..40547616,+!p1@ZNF620!1.24!23.33!ZNF620;;chr18:6414884..6414942,-!p1@L3MBTL4!1.24!20.72!L3MBTL4;;chr5:2751785..2751808,-!p2@IRX2!1.23!15.94!IRX2;;chr13:72441506..72441562,-!p3@DACH1!1.23!15.94!DACH1;;chr1:216896780..216896800,-!p2@ESRRG!1.22!15.65!ESRRG;;chr2:5832493..5832507,+!p2@SOX11!1.22!15.65!SOX11;;chr17:46622205..46622218,-!p3@HOXB2!1.19!16.96!HOXB2;;chr11:111249993..111250006,-!p1@POU2AF1!1.19!14.49!POU2AF1;;chr3:157824202..157824211,-!p3@SHOX2!1.19!14.35!SHOX2;;chrX:84498989..84499003,+!p1@ZNF711!1.18!19.27!ZNF711;;chr9:96717629..96717644,-!p1@BARX1!1.18!14.20!BARX1;;chrX:84499081..84499115,+!p2@ZNF711!1.17!20.29!ZNF711;;chr2:176972000..176972025,+!p4@HOXD11!1.17!13.77!HOXD11;;chr1:10754477..10754517,-!p1@CASZ1!1.16!22.46!CASZ1;;chr15:68115672..68115691,+!p1@SKOR1!1.16!13.33!SKOR1;;chr18:53089453..53089482,-!p11@TCF4!1.16!13.33!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.19!ZNF750;;chr9:126774018..126774055,+!p1@LHX2!1.15!13.04!LHX2;;chr2:2335109..2335134,-!p2@MYT1L!1.15!13.04!MYT1L;;chr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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10844-111E7
 |is_a=CL:0000242;;EFO:0002091;;FF:0000210;;FF:0100297
 |is_obsolete=
+|library_id=CNhs12839
+|library_id_phase_based=2:CNhs12839
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10844
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10844
 |name=merkel cell carcinoma cell line:MS-1
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12839,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=111
 |rna_catalog_number=
@@ Line 58: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=111E7
+|rna_tube_id=1.11E+09
 |rna_weight_ug=8.88165
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=9111802
 |sample_cell_line=MS-1
@@ Line 82: / Line 100: @@
 |top_motifs=POU6F1:3.76335713863;SOX{8,9,10}:3.28270620467;BREu{core}:3.16089337843;NKX2-3_NKX2-5:2.94445761357;NANOG:2.74576526173;TFDP1:2.54169461394;ADNP_IRX_SIX_ZHX:2.33685006144;NFY{A,B,C}:2.33400603659;MYOD1:2.30387308024;LMO2:2.06358489504;E2F1..5:2.04693724697;POU1F1:2.0210053614;LHX3,4:1.98547098942;NRF1:1.73809527491;ZNF143:1.73596491698;SOX17:1.70814019014;YY1:1.69736502642;HBP1_HMGB_SSRP1_UBTF:1.68669799058;PBX1:1.66373024443;AHR_ARNT_ARNT2:1.53463347837;ELK1,4_GABP{A,B1}:1.50388786447;ZEB1:1.47726958336;SNAI1..3:1.46637822582;VSX1,2:1.46036152042;NKX6-1,2:1.4074336104;SOX2:1.39984098484;HOX{A4,D4}:1.38773464672;PRRX1,2:1.33395051326;FOXQ1:1.32842975264;PAX3,7:1.32172242271;POU2F1..3:1.29543277648;GFI1:1.22601697;ONECUT1,2:1.155705998;PITX1..3:1.15046963274;PAX6:1.12287124138;FOXD3:1.12095320513;MED-1{core}:1.08483390917;POU5F1:1.06381108362;RFX2..5_RFXANK_RFXAP:1.06073294778;PATZ1:1.01081739354;RBPJ:0.993239946549;LEF1_TCF7_TCF7L1,2:0.991130375198;ATF4:0.984633930901;ARID5B:0.971233932648;PDX1:0.924892947364;FOXM1:0.922293034195;RFX1:0.917446742923;XCPE1{core}:0.900164070916;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.871913815168;ZFP161:0.860357039553;DBP:0.834046323377;JUN:0.831422854557;RREB1:0.808717560287;MTE{core}:0.793689043321;SOX5:0.790757150085;NHLH1,2:0.769850913452;FOXP1:0.73181288662;HOX{A6,A7,B6,B7}:0.698832605053;TFAP2B:0.693867139119;STAT1,3:0.692562139981;TGIF1:0.690688091475;MZF1:0.684956061088;IKZF2:0.64015087665;FOXL1:0.629147538333;EVI1:0.597133445344;CUX2:0.597030618851;HOXA9_MEIS1:0.595000798987;PAX8:0.589941051834;FOXA2:0.509869439405;NKX3-1:0.473862114029;PAX5:0.446801620731;HIC1:0.428996186595;REST:0.412062535609;TEF:0.392827285678;RORA:0.383965840713;ATF5_CREB3:0.379261365733;MTF1:0.377525627546;HSF1,2:0.353241605111;ZNF423:0.353158512685;GFI1B:0.347433566681;NKX2-1,4:0.34384331122;PAX4:0.33656631745;MYB:0.32499754418;NR5A1,2:0.301879133312;ATF2:0.27982581339;BPTF:0.269459334924;bHLH_family:0.26107885526;EGR1..3:0.25963314782;ZNF384:0.258108746005;AR:0.249453143754;FOX{F1,F2,J1}:0.245574066599;ZBTB6:0.232019251686;AIRE:0.227373780065;GTF2I:0.223571161162;OCT4_SOX2{dimer}:0.202480448789;HAND1,2:0.173517822984;NKX3-2:0.136271356924;STAT5{A,B}:0.102198879268;TAL1_TCF{3,4,12}:0.0837253463259;CDX1,2,4:0.0758125786262;FOX{D1,D2}:0.0473375467014;CDC5L:0.038159537485;MYFfamily:0.0338472237115;ESRRA:-0.0498313712265;ZBTB16:-0.0519778173233;UFEwm:-0.0627864901566;NR6A1:-0.0771168937077;HMX1:-0.0847876422148;PPARG:-0.0925205352855;POU3F1..4:-0.121516746102;EN1,2:-0.155936608555;CRX:-0.163842397654;TP53:-0.175085003174;HNF1A:-0.176649513172;ZIC1..3:-0.190736211435;SP1:-0.198466306544;PRDM1:-0.206122067403;GATA6:-0.207719757882;KLF4:-0.223857021845;CREB1:-0.227150323275;EBF1:-0.229504318285;GATA4:-0.235470997367;FOXP3:-0.23992518268;FOXN1:-0.243628184483;TOPORS:-0.27213676909;MEF2{A,B,C,D}:-0.272714021304;T:-0.285076220767;GTF2A1,2:-0.303776163858;GZF1:-0.362875524963;HES1:-0.371312449178;NFE2L2:-0.395717354835;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.408220941504;TLX1..3_NFIC{dimer}:-0.420671280334;HOX{A5,B5}:-0.430655924235;NR1H4:-0.437699300557;HNF4A_NR2F1,2:-0.450987821978;NKX2-2,8:-0.468073049273;MAZ:-0.47679728488;FOSL2:-0.501994363506;PAX1,9:-0.52680242036;TBX4,5:-0.539301328137;SREBF1,2:-0.542060609318;FOX{I1,J2}:-0.54988563519;ZNF238:-0.568468942848;HMGA1,2:-0.573211955033;PAX2:-0.579265862588;TBP:-0.614167912324;GCM1,2:-0.63691966067;FOS_FOS{B,L1}_JUN{B,D}:-0.657389713549;RUNX1..3:-0.657599513901;SPI1:-0.695143028587;NFIX:-0.696819873532;BACH2:-0.697687995026;NFKB1_REL_RELA:-0.725623162024;ELF1,2,4:-0.756417671659;NFE2:-0.759849578867;DMAP1_NCOR{1,2}_SMARC:-0.770254958328;HLF:-0.796686457449;FOXO1,3,4:-0.817237884215;NFIL3:-0.818322024479;SPIB:-0.83557306755;ALX1:-0.836517808532;EP300:-0.853659383746;SPZ1:-0.868894298385;NFE2L1:-0.938127798005;MAFB:-0.998919054222;TFAP4:-1.01500527906;ALX4:-1.01545101793;XBP1:-1.03520072484;NANOG{mouse}:-1.09918436751;ETS1,2:-1.10256639589;TEAD1:-1.10299363153;MYBL2:-1.12143933382;CEBPA,B_DDIT3:-1.12229709558;NR3C1:-1.13117443043;ATF6:-1.16503853179;SMAD1..7,9:-1.18398027351;IKZF1:-1.19116784248;TLX2:-1.24209222318;HIF1A:-1.26253148936;TFAP2{A,C}:-1.28681099951;IRF7:-1.35100198183;ZNF148:-1.37931753116;IRF1,2:-1.42625429224;GLI1..3:-1.45248654203;RXRA_VDR{dimer}:-1.588698446;ESR1:-1.64425513517;TFCP2:-1.65630408426;NFATC1..3:-1.75251773665;RXR{A,B,G}:-1.78357281927;STAT2,4,6:-1.86079650604;SRF:-1.92640370296
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10844-111E7;search_select_hide=table117:FF:10844-111E7
 }}

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FF:10844-111E7: Difference between revisions

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Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0