FF:10844-111E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005928 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007934;DRR008806;DRZ000231;DRZ001616;DRZ011581;DRZ012966 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002319,CL:0000095,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000123,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0000242 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10844-111E7 | |id=FF:10844-111E7 | ||
|is_a=CL:0000242;;EFO:0002091;;FF: | |is_a=CL:0000242;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs12839 | |||
|library_id_phase_based=2:CNhs12839 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10844 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10844 | |||
|name=merkel cell carcinoma cell line:MS-1 | |name=merkel cell carcinoma cell line:MS-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12839,LSID973,release012,COMPLETED | |profile_hcage=CNhs12839,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0552682668253555,0,0,0,0,-0.0497814964356746,0,-0.133353085922057,0.525270730552222,0,0,0,0,0,0,0,0,0.156780194442811,0,0,0.110536533650711,0,0.209213984823722,0,0,0,0.0992851254171535,0,0.10061235456625,0,0,0.518137652279524,0,0,0,0,0,0,0,0,0,0,0,0,0.0537692427908373,0.156780194442811,0,0,0,0,0,0,0,0.00517274492322435,0,0,0,0,0,0.00499419103924756,0.0587755320721174,0.340607970464489,0,0,0.10122662362121,0,0,0,0,0,0,0,0,0.0587755320721174,0,0,0,0,0,0,0,0,0,0.0293877660360587,0,0,0,0,0.0472836963971567,0.0686489036992597,0.0552682668253555,0,0,0.260325729508765,0.11383833364163,0,0,0.0293877660360587,0,0.012501182413005,0.359085877836145,0,0,0,0,0,0,0.110536533650711,0,0,0,0.0587755320721174,0,0,0,0,0,0,0.0219712445293401,0.156780194442811,0,0,0,-0.0850570879155377,0,0,0.167922246295693,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.012501182413005,0,0,0.0587755320721174,0.0587755320721174,0.110536533650711,0,0.110536533650711,0,0,0,0,-0.247178875285564,0.0846560328614142,0.549774563293274,0.245510932178927,0,0,-0.246010589323496,0,0,0,0,0.110536533650711,0.156780194442811,0,0.110536533650711,0.0587755320721174,0.0286603274902461,0,0.00836298048280244,0.0293877660360587,0,0.0059050869371387,0,0.0293877660360587,0.445612237485259,0,-0.074972935732356,0.130225989756939,0,0.0587755320721174,0,0.071349953212263,0.210545787295971,0,-0.0103429501430292,-0.0827201683234173,0.716948888614053,0.172287229978163,-0.055712496781182,0,0,0,0.0390252945981826,-0.167935894607446,0,0,-0.0923920857158153,0.456021178861921,0,0,-0.391044581551635,0,-0.18514247891489,-0.178197223779775,0,0.0188098033298174,0,0,0,0,0,0.0587755320721174,0,0.156780194442811,0.389026074702399,0,0,-0.0574934668214365,0.0355483984931811,0,0,0,0,-0.369648570336952,0.0587755320721174,0.0051803461890549,-0.373286155956567,-0.159095442834149,0.17288970813323,0.74195088795645,0,-0.302389727009913,0.037925900324942,-0.137623155424587,0.260325729508765,0.124329699889152,-0.189981719549847,0,0.0686489036992597,0.298622343436225,0.147370926176187,-0.352521994345709,0.244678687978145,-0.7298268412013,0.288702955492374,0,0.110536533650711,-0.0775089264793031,-0.493412237977139,0.0527424786604875,0.0811343515713114,0.226114890226063,0.38118484580575,0.101004642389626,0.234992408009368,0.0569879930012052,0.216384560038625,0.791696457979131,-0.185704903636305,0.0325720927809071,0.157317606534117,0.0550309253389294,0.0587755320721174,0,0.0709098312699254,-0.00256346475599967,-0.281499465935928,0.110487165089044,0.122762972346651,0.391646985097418,0.312857875803001,0.246621303626253,0.118313294982485,0,-0.170756093376517,-0.118785984696625,0.0587755320721174,0,0,0.172878868633675,0.0587755320721174,0.11847140268809,0.151842932431799,0.00383411534805733,0.089196195964183,0.179013450346271,0.002100286160323,0.190224705265561,0.0651270273101777,0.22513691941054,-0.0872343653852768,0.0337967130633385,-0.182097270945524,0.0182429056810043,-0.0646241515295865,-0.392505980162105,-0.164990696339003,0.117140133632549,1.27848711159762,0.0528767085755916,0.23737025832271,-0.388461575108368,-0.374947908533894,0.0554155799101721,-0.0881268324752877,0.194267451914678,0.259406667684887,0.326112377072209,0.0673200644834395,0.170037460442139,0,-0.677367268714073,0,-0.01262560056071,0.0052539475490463,0.220186602134906,0.360272451898328,1.18558621711928,-0.346477653138713,0,0.250536460118728,-0.551441260870372,0.198570250834307,-0.0356608475062918,0,0.900706203371568,0.527964312523467,0.115684779299328,0.383664162676748,-0.138989456679195,0.242236422128075,-0.086119467906877,0,0.36253699517215,-0.11458778229175,0.0686798510216192,0,-0.0850370319788066,-0.337471364953106,-0.0832432749208226,-0.115971073434934,0.0587755320721174,0,0.285548649261853,0.0611162748327423,0,-0.0849552975435584,0.0523562107353928,0.992981507032148,0.206664904688031,0.0293877660360587,-0.0498472773821383,0,0.304155888786008,-0.0669912323144642,0,-0.0671921083160555,0,0,-0.0513110457645165,0,0,0,0.716229604702836,0.0235344752957828,0,0,0,0,0.0783900972214055,0,0,0.101784358253321,-0.118143653312846,0,0.0249936796032941,0,0,0,0,0,0.0375445851319516,0.000994801281978264,0,-1.53355530674756,0,-0.0642418836043029,0,0,0.0293877660360587,0,-0.0171531517191675,0.0684949871655664,0,0.0667075443366754,0,0,0,0,0.0706392046535994,0,0,0,0.107777863257464,0.0528060765970474,-0.204051629063867,0,0,0,0.607635222021578,0,0,0,0,-0.121181383906711,0,0,-0.26939317821423,0.0587755320721174,0.12087258923854,0.475754279514151,0.0271493925725779,0.0797300124438086,-1.42994154422822,0.0214801510486149,0,0,-0.20257159971777,0,0.0122509657404212,-0.534362654547443,-0.023594690893549,0.110536533650711,0.0926507043497935,0,0,0,0,0,0,0.0574170368605346,0,0,0,0,0,0,0,0,0,0,0,-0.199846818331902,0.018312476992201,0,0,0,0.0587755320721174,0.0711758941235397,0,0.0587755320721174,-0.0241060230789031,0.187055287229616,0,0,0,0,0,0.0587755320721174,0,0.0471421702503231,0.103010427732569,0.0587755320721174,0,0,0,0,0.340607970464489,0,0,0,0.110536533650711,0.61294112939735,0,0,-0.166825598542803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0334611084073631,-0.133353085922057,0,0.0587755320721174,0,0,0,0,0,0.226748368879714,0,0.437600331707094,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.0497814964356746,0,0,0,0.0552682668253555,0,0,0.625620421879484,0.0293877660360587,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.685978293217175,0,0.110536533650711,0.113346688324147,0,0,0.153800650323449,0,0,0,0,0,0,0.0470496731928784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156780194442811,0,0,0,0,0,0,0.043532053416317,0,0,0,0,0,0,0,0.10061235456625,0,0,0.0991012316549748,0,0,0,0,0,0,0.0511888572723435,-0.135487795335288,0.0913675070680433,0,0,0,0.08148020214769,0,0.00187491288427011,0.00998838207849512,0.0587755320721174,-0.00800185534678399,0.520972766274472,0,0,0,0,0,0,0.807573685557122,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.11E+09 | ||
|rna_weight_ug=8.88165 | |rna_weight_ug=8.88165 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9111802 | |sample_cell_catalog=9111802 | ||
|sample_cell_line=MS-1 | |sample_cell_line=MS-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42232391687662e-304!GO:0043226;organelle;6.88493266351785e-275!GO:0043229;intracellular organelle;2.38778402061046e-274!GO:0043231;intracellular membrane-bound organelle;6.29521154315307e-270!GO:0043227;membrane-bound organelle;1.1126426920878e-269!GO:0005634;nucleus;8.97829107531225e-168!GO:0044422;organelle part;2.10283849634498e-159!GO:0044446;intracellular organelle part;1.9279037908986e-158!GO:0005737;cytoplasm;2.04096152916797e-135!GO:0044237;cellular metabolic process;6.75980993136182e-114!GO:0043170;macromolecule metabolic process;8.1938830640438e-112!GO:0044238;primary metabolic process;1.83915585851213e-111!GO:0032991;macromolecular complex;2.2047255190177e-108!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.78037459421321e-103!GO:0043283;biopolymer metabolic process;1.24976485266656e-96!GO:0010467;gene expression;3.39162574632171e-95!GO:0044428;nuclear part;3.8510841100519e-95!GO:0044444;cytoplasmic part;7.81749622357827e-89!GO:0030529;ribonucleoprotein complex;2.38651047822261e-86!GO:0003723;RNA binding;7.87335832479666e-79!GO:0043233;organelle lumen;2.46609905426969e-77!GO:0031974;membrane-enclosed lumen;2.46609905426969e-77!GO:0003676;nucleic acid binding;2.91745253634214e-76!GO:0016070;RNA metabolic process;5.52309899351765e-65!GO:0006396;RNA processing;3.45246732437343e-59!GO:0005515;protein binding;2.28215623182594e-58!GO:0043234;protein complex;5.39208912853924e-56!GO:0016043;cellular component organization and biogenesis;5.87165608796644e-56!GO:0031981;nuclear lumen;3.4852226277377e-54!GO:0005739;mitochondrion;3.83552740671415e-54!GO:0006996;organelle organization and biogenesis;4.89089572227346e-48!GO:0006259;DNA metabolic process;7.15278478044381e-47!GO:0016071;mRNA metabolic process;1.67607372157531e-46!GO:0043228;non-membrane-bound organelle;2.08724082660346e-46!GO:0043232;intracellular non-membrane-bound organelle;2.08724082660346e-46!GO:0005840;ribosome;4.06700660089486e-46!GO:0008380;RNA splicing;5.79382984576126e-44!GO:0006397;mRNA processing;5.13033241932201e-41!GO:0031090;organelle membrane;9.66971957320859e-40!GO:0033036;macromolecule localization;1.80264635859046e-38!GO:0003735;structural constituent of ribosome;1.81684703939696e-38!GO:0031967;organelle envelope;2.31199873154022e-38!GO:0044429;mitochondrial part;2.72545708777787e-38!GO:0031975;envelope;3.36045042109487e-38!GO:0015031;protein transport;4.58469054224418e-38!GO:0006412;translation;2.31217543130691e-37!GO:0007049;cell cycle;9.44705356498717e-37!GO:0033279;ribosomal subunit;4.51603790540132e-35!GO:0005654;nucleoplasm;4.08990838044372e-34!GO:0008104;protein localization;9.518241053147e-34!GO:0046907;intracellular transport;1.12389598379761e-33!GO:0045184;establishment of protein localization;2.91294695154502e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.59673429931243e-31!GO:0005694;chromosome;1.38292676414432e-30!GO:0005681;spliceosome;2.44802676706085e-30!GO:0065003;macromolecular complex assembly;4.43772323724356e-30!GO:0022402;cell cycle process;5.96104031249737e-29!GO:0000166;nucleotide binding;8.73836659296577e-29!GO:0044451;nucleoplasm part;2.09871266688938e-28!GO:0009059;macromolecule biosynthetic process;3.02200775831982e-28!GO:0000278;mitotic cell cycle;3.67800511879777e-28!GO:0051649;establishment of cellular localization;4.58359575007684e-28!GO:0019538;protein metabolic process;6.14320066311274e-28!GO:0051641;cellular localization;2.9337823133768e-27!GO:0022607;cellular component assembly;3.01968205788653e-27!GO:0009058;biosynthetic process;3.42637890555703e-27!GO:0006350;transcription;3.83724343028903e-27!GO:0051276;chromosome organization and biogenesis;1.12944819959185e-26!GO:0044249;cellular biosynthetic process;1.43801214844543e-26!GO:0044267;cellular protein metabolic process;1.63871124351616e-26!GO:0006974;response to DNA damage stimulus;1.65673781151688e-26!GO:0019222;regulation of metabolic process;1.29100913487713e-25!GO:0044260;cellular macromolecule metabolic process;1.65808583278931e-25!GO:0044427;chromosomal part;1.6888710659053e-25!GO:0006886;intracellular protein transport;2.19402225784924e-25!GO:0022403;cell cycle phase;4.38236123840402e-25!GO:0019866;organelle inner membrane;1.07298643787061e-24!GO:0006281;DNA repair;1.21758053602624e-24!GO:0005740;mitochondrial envelope;5.98423416493055e-24!GO:0032774;RNA biosynthetic process;6.13688399199701e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.42596894455122e-24!GO:0005829;cytosol;1.00669802786502e-23!GO:0006351;transcription, DNA-dependent;1.00778206055967e-23!GO:0000087;M phase of mitotic cell cycle;1.88547725029653e-23!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03151135184536e-23!GO:0007067;mitosis;6.38155987321072e-23!GO:0006119;oxidative phosphorylation;7.12225753652512e-23!GO:0031323;regulation of cellular metabolic process;1.0025324455578e-22!GO:0010468;regulation of gene expression;1.04484619729577e-22!GO:0016462;pyrophosphatase activity;1.11842641924798e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.64146002659847e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8911003902214e-22!GO:0017111;nucleoside-triphosphatase activity;1.90606563163943e-22!GO:0031966;mitochondrial membrane;2.01376205234061e-22!GO:0005743;mitochondrial inner membrane;3.17767926579501e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;9.76363888839655e-22!GO:0003677;DNA binding;1.10241468905626e-21!GO:0044455;mitochondrial membrane part;1.72155877992994e-21!GO:0045449;regulation of transcription;2.29401060633165e-21!GO:0000279;M phase;2.39169358508341e-21!GO:0006323;DNA packaging;8.46266997114959e-21!GO:0044445;cytosolic part;2.73252034616055e-20!GO:0005730;nucleolus;4.20200644878766e-20!GO:0006355;regulation of transcription, DNA-dependent;5.26487248666361e-20!GO:0032553;ribonucleotide binding;1.60191958834008e-19!GO:0032555;purine ribonucleotide binding;1.60191958834008e-19!GO:0050794;regulation of cellular process;3.70163818620356e-19!GO:0051301;cell division;6.70126517263446e-19!GO:0006260;DNA replication;9.36031825958134e-19!GO:0005524;ATP binding;1.37375619112001e-18!GO:0015935;small ribosomal subunit;2.20963884791166e-18!GO:0006512;ubiquitin cycle;2.63241626662584e-18!GO:0022618;protein-RNA complex assembly;6.31163455792876e-18!GO:0017076;purine nucleotide binding;7.04825211479492e-18!GO:0015934;large ribosomal subunit;7.07499288807601e-18!GO:0032559;adenyl ribonucleotide binding;8.68139599666726e-18!GO:0031980;mitochondrial lumen;1.65840996058339e-17!GO:0005759;mitochondrial matrix;1.65840996058339e-17!GO:0005746;mitochondrial respiratory chain;2.1883679584857e-17!GO:0015630;microtubule cytoskeleton;4.25933342292515e-17!GO:0008134;transcription factor binding;9.92903213600195e-17!GO:0016874;ligase activity;1.20331513038591e-16!GO:0031965;nuclear membrane;1.22149936878658e-16!GO:0012505;endomembrane system;1.78639459058743e-16!GO:0008135;translation factor activity, nucleic acid binding;1.8101404748957e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.94637586052227e-16!GO:0003954;NADH dehydrogenase activity;3.94637586052227e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.94637586052227e-16!GO:0009719;response to endogenous stimulus;4.73533704703189e-16!GO:0030554;adenyl nucleotide binding;6.53351270125453e-16!GO:0016887;ATPase activity;8.42248622831086e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91384197474762e-15!GO:0000375;RNA splicing, via transesterification reactions;1.91384197474762e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91384197474762e-15!GO:0005635;nuclear envelope;1.99787858993122e-15!GO:0042623;ATPase activity, coupled;4.28752123652444e-15!GO:0006457;protein folding;4.75739047294674e-15!GO:0016604;nuclear body;5.46025011139274e-15!GO:0044453;nuclear membrane part;1.15852492684731e-14!GO:0050789;regulation of biological process;1.49190345333145e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.55291784050816e-14!GO:0019941;modification-dependent protein catabolic process;1.82183479909455e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.82183479909455e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.40668355115289e-14!GO:0005761;mitochondrial ribosome;2.70307324446417e-14!GO:0000313;organellar ribosome;2.70307324446417e-14!GO:0000785;chromatin;2.73666780106343e-14!GO:0042254;ribosome biogenesis and assembly;3.30381129901561e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.32508257049917e-14!GO:0006333;chromatin assembly or disassembly;3.37207282948299e-14!GO:0044257;cellular protein catabolic process;4.6034052898065e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.31071508503487e-14!GO:0045271;respiratory chain complex I;6.31071508503487e-14!GO:0005747;mitochondrial respiratory chain complex I;6.31071508503487e-14!GO:0005643;nuclear pore;8.42910587736611e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0042773;ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0016568;chromatin modification;1.00355724797163e-13!GO:0044265;cellular macromolecule catabolic process;1.35752497108134e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.16828389502184e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.04114198865006e-13!GO:0006403;RNA localization;4.10478465844841e-13!GO:0006605;protein targeting;4.75904748249582e-13!GO:0050657;nucleic acid transport;5.46669800944479e-13!GO:0051236;establishment of RNA localization;5.46669800944479e-13!GO:0050658;RNA transport;5.46669800944479e-13!GO:0065004;protein-DNA complex assembly;6.06877069377194e-13!GO:0004386;helicase activity;6.33972880964609e-13!GO:0016607;nuclear speck;9.15085498240473e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47327498550752e-12!GO:0006366;transcription from RNA polymerase II promoter;1.48063274314161e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.75351221868533e-12!GO:0043285;biopolymer catabolic process;3.34750630538258e-12!GO:0051082;unfolded protein binding;4.47637134556112e-12!GO:0051726;regulation of cell cycle;6.1621946896305e-12!GO:0008026;ATP-dependent helicase activity;6.17001416343389e-12!GO:0043412;biopolymer modification;7.98482271799176e-12!GO:0003743;translation initiation factor activity;9.32570211020511e-12!GO:0000074;regulation of progression through cell cycle;1.70782474477933e-11!GO:0048770;pigment granule;2.30036166909891e-11!GO:0042470;melanosome;2.30036166909891e-11!GO:0005794;Golgi apparatus;2.55818813970635e-11!GO:0008565;protein transporter activity;3.67619448090602e-11!GO:0051028;mRNA transport;5.94545582049381e-11!GO:0030163;protein catabolic process;6.32861892198464e-11!GO:0006399;tRNA metabolic process;6.45545417329368e-11!GO:0006413;translational initiation;6.71166065585475e-11!GO:0016192;vesicle-mediated transport;9.57488582041754e-11!GO:0009057;macromolecule catabolic process;1.3384187471534e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.73190969251034e-10!GO:0046930;pore complex;1.85283012416987e-10!GO:0065002;intracellular protein transport across a membrane;2.15083641344675e-10!GO:0003712;transcription cofactor activity;2.42998086537161e-10!GO:0006261;DNA-dependent DNA replication;2.48553412666725e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.51764500592103e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.62166282872905e-10!GO:0006913;nucleocytoplasmic transport;2.69307320407937e-10!GO:0006446;regulation of translational initiation;2.73270489314924e-10!GO:0019829;cation-transporting ATPase activity;2.73270489314924e-10!GO:0005874;microtubule;2.94380577546081e-10!GO:0000775;chromosome, pericentric region;3.55145436977056e-10!GO:0006464;protein modification process;3.5979378492829e-10!GO:0005819;spindle;4.07800941028563e-10!GO:0043566;structure-specific DNA binding;4.82748257869232e-10!GO:0006364;rRNA processing;5.17560701523622e-10!GO:0051169;nuclear transport;5.81660380627613e-10!GO:0006163;purine nucleotide metabolic process;7.05523161281394e-10!GO:0009259;ribonucleotide metabolic process;8.13484488544562e-10!GO:0016072;rRNA metabolic process;8.13484488544562e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.22830296918054e-09!GO:0048193;Golgi vesicle transport;1.44216427532405e-09!GO:0051186;cofactor metabolic process;1.78430905290202e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01264937515222e-09!GO:0007017;microtubule-based process;2.32737087776991e-09!GO:0003697;single-stranded DNA binding;2.44891487883849e-09!GO:0009141;nucleoside triphosphate metabolic process;4.59646782341983e-09!GO:0006334;nucleosome assembly;4.64373947008272e-09!GO:0043687;post-translational protein modification;4.70228723751788e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.76643293333032e-09!GO:0009150;purine ribonucleotide metabolic process;4.99425856074368e-09!GO:0031497;chromatin assembly;6.85914992891284e-09!GO:0006164;purine nucleotide biosynthetic process;7.69252809522031e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.19372369710031e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0015986;ATP synthesis coupled proton transport;1.56418921562735e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.56418921562735e-08!GO:0009260;ribonucleotide biosynthetic process;1.711018521564e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.18920003918694e-08!GO:0046034;ATP metabolic process;2.25687567984769e-08!GO:0016779;nucleotidyltransferase activity;3.31068781713302e-08!GO:0009060;aerobic respiration;4.02266358956265e-08!GO:0008639;small protein conjugating enzyme activity;4.06563553373696e-08!GO:0051329;interphase of mitotic cell cycle;4.28145722470644e-08!GO:0017038;protein import;4.50346023466408e-08!GO:0003682;chromatin binding;4.64952889800717e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.47060921121138e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0000075;cell cycle checkpoint;5.82117465525987e-08!GO:0044248;cellular catabolic process;5.96150616170326e-08!GO:0008094;DNA-dependent ATPase activity;6.97466182720897e-08!GO:0004842;ubiquitin-protein ligase activity;7.27009494288585e-08!GO:0019787;small conjugating protein ligase activity;7.76109184510992e-08!GO:0009055;electron carrier activity;8.35518064213031e-08!GO:0051325;interphase;9.20677160444579e-08!GO:0006732;coenzyme metabolic process;9.84024694481255e-08!GO:0065007;biological regulation;1.32329509344784e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.61701132624965e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.61701132624965e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.61701132624965e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0003899;DNA-directed RNA polymerase activity;2.23265994400353e-07!GO:0000245;spliceosome assembly;2.29275597362386e-07!GO:0044431;Golgi apparatus part;2.32254833850933e-07!GO:0006754;ATP biosynthetic process;2.36437301296924e-07!GO:0006753;nucleoside phosphate metabolic process;2.36437301296924e-07!GO:0007051;spindle organization and biogenesis;2.42778608097253e-07!GO:0005667;transcription factor complex;2.83081818232535e-07!GO:0043623;cellular protein complex assembly;3.07295493509972e-07!GO:0045333;cellular respiration;3.4965177443902e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.94191559321235e-07!GO:0016881;acid-amino acid ligase activity;5.47808794477903e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.49229942200943e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.02968171295658e-07!GO:0043038;amino acid activation;6.46264650431073e-07!GO:0006418;tRNA aminoacylation for protein translation;6.46264650431073e-07!GO:0043039;tRNA aminoacylation;6.46264650431073e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.50218380115531e-07!GO:0045259;proton-transporting ATP synthase complex;7.54406066883874e-07!GO:0005657;replication fork;8.0527272283455e-07!GO:0003724;RNA helicase activity;8.0527272283455e-07!GO:0005813;centrosome;8.73923057774299e-07!GO:0007059;chromosome segregation;8.79471006073091e-07!GO:0032446;protein modification by small protein conjugation;1.06800405697088e-06!GO:0045045;secretory pathway;1.19498054374739e-06!GO:0031988;membrane-bound vesicle;1.24299082278518e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.36216763585076e-06!GO:0007010;cytoskeleton organization and biogenesis;1.49615162821261e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.77049921135909e-06!GO:0048475;coated membrane;1.85878673330511e-06!GO:0030117;membrane coat;1.85878673330511e-06!GO:0005815;microtubule organizing center;1.90002110785323e-06!GO:0006099;tricarboxylic acid cycle;2.00161480701965e-06!GO:0046356;acetyl-CoA catabolic process;2.00161480701965e-06!GO:0031982;vesicle;2.05115869381238e-06!GO:0008270;zinc ion binding;2.57854719748324e-06!GO:0031410;cytoplasmic vesicle;2.69154243353043e-06!GO:0016567;protein ubiquitination;2.74226227243696e-06!GO:0044432;endoplasmic reticulum part;2.80286864665146e-06!GO:0016564;transcription repressor activity;3.12537632414019e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.53268783978544e-06!GO:0006752;group transfer coenzyme metabolic process;4.23508361292683e-06!GO:0006084;acetyl-CoA metabolic process;4.87576452100227e-06!GO:0005783;endoplasmic reticulum;6.0808916058472e-06!GO:0015631;tubulin binding;6.23040298274207e-06!GO:0003729;mRNA binding;7.68247228249314e-06!GO:0006461;protein complex assembly;7.75151155510488e-06!GO:0007005;mitochondrion organization and biogenesis;8.40608275611576e-06!GO:0000151;ubiquitin ligase complex;9.32112534750979e-06!GO:0016363;nuclear matrix;1.03365124661162e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.05329758864068e-05!GO:0051188;cofactor biosynthetic process;1.08887027417372e-05!GO:0005762;mitochondrial large ribosomal subunit;1.35252220562773e-05!GO:0000315;organellar large ribosomal subunit;1.35252220562773e-05!GO:0006383;transcription from RNA polymerase III promoter;1.41783397294496e-05!GO:0016740;transferase activity;1.45130219966581e-05!GO:0000139;Golgi membrane;1.55224721499607e-05!GO:0051168;nuclear export;1.58957848624594e-05!GO:0031324;negative regulation of cellular metabolic process;2.15533063807651e-05!GO:0003714;transcription corepressor activity;2.15814202231253e-05!GO:0006613;cotranslational protein targeting to membrane;2.21325677036727e-05!GO:0000228;nuclear chromosome;2.25583350324438e-05!GO:0008186;RNA-dependent ATPase activity;2.36794471538336e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.93840812453099e-05!GO:0009892;negative regulation of metabolic process;3.05100100629904e-05!GO:0006793;phosphorus metabolic process;3.23958563308963e-05!GO:0006796;phosphate metabolic process;3.23958563308963e-05!GO:0000776;kinetochore;3.31805799053505e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.39133754052964e-05!GO:0009109;coenzyme catabolic process;3.43655823749505e-05!GO:0006302;double-strand break repair;3.50407120682181e-05!GO:0051170;nuclear import;4.06101537422624e-05!GO:0009117;nucleotide metabolic process;4.54311129870015e-05!GO:0000314;organellar small ribosomal subunit;5.52316807510854e-05!GO:0005763;mitochondrial small ribosomal subunit;5.52316807510854e-05!GO:0003713;transcription coactivator activity;5.62203417767921e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.79735793609225e-05!GO:0003924;GTPase activity;5.91569677545063e-05!GO:0008033;tRNA processing;5.94592635714913e-05!GO:0003678;DNA helicase activity;6.42344570751494e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.48013547483617e-05!GO:0030120;vesicle coat;6.48013547483617e-05!GO:0030662;coated vesicle membrane;6.48013547483617e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.76102564096506e-05!GO:0009108;coenzyme biosynthetic process;6.76102564096506e-05!GO:0007088;regulation of mitosis;6.76102564096506e-05!GO:0006606;protein import into nucleus;7.01628401803219e-05!GO:0004004;ATP-dependent RNA helicase activity;7.73080819956239e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.98501182549096e-05!GO:0000059;protein import into nucleus, docking;8.2535178296864e-05!GO:0005768;endosome;8.53754170486746e-05!GO:0005789;endoplasmic reticulum membrane;8.75085540853381e-05!GO:0003702;RNA polymerase II transcription factor activity;9.61019445693155e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000152222297070806!GO:0007093;mitotic cell cycle checkpoint;0.000153241784739267!GO:0003690;double-stranded DNA binding;0.000160914561067195!GO:0005839;proteasome core complex (sensu Eukaryota);0.00016141396358379!GO:0044452;nucleolar part;0.000164049490901084!GO:0006352;transcription initiation;0.000170724741399659!GO:0016481;negative regulation of transcription;0.000173988123919727!GO:0051187;cofactor catabolic process;0.000175399085954529!GO:0006338;chromatin remodeling;0.000180394690872088!GO:0016310;phosphorylation;0.000187677335563467!GO:0003684;damaged DNA binding;0.000197268783120365!GO:0051427;hormone receptor binding;0.000199878900132902!GO:0048471;perinuclear region of cytoplasm;0.000216383585289775!GO:0004674;protein serine/threonine kinase activity;0.000231693654835082!GO:0008654;phospholipid biosynthetic process;0.000239925411742729!GO:0005876;spindle microtubule;0.000260209535210899!GO:0016741;transferase activity, transferring one-carbon groups;0.000266305021795658!GO:0005875;microtubule associated complex;0.000266916300324633!GO:0043681;protein import into mitochondrion;0.000271411857821027!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000282222474546797!GO:0005684;U2-dependent spliceosome;0.000283361055641653!GO:0008017;microtubule binding;0.00028355187033816!GO:0043021;ribonucleoprotein binding;0.000291957089704955!GO:0006612;protein targeting to membrane;0.000303946957449164!GO:0008168;methyltransferase activity;0.00031243295654634!GO:0045786;negative regulation of progression through cell cycle;0.000316406999881504!GO:0000786;nucleosome;0.00032350727882274!GO:0006414;translational elongation;0.00035184809740207!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00035951579263366!GO:0007006;mitochondrial membrane organization and biogenesis;0.000408381396000027!GO:0035257;nuclear hormone receptor binding;0.000419380733997304!GO:0006310;DNA recombination;0.000432469229711133!GO:0030118;clathrin coat;0.000529057340381781!GO:0016853;isomerase activity;0.000529137742653701!GO:0006626;protein targeting to mitochondrion;0.000532220998916741!GO:0006405;RNA export from nucleus;0.000539834275716084!GO:0031072;heat shock protein binding;0.00056143842332425!GO:0000792;heterochromatin;0.000573503039465452!GO:0004298;threonine endopeptidase activity;0.000573503039465452!GO:0005525;GTP binding;0.000573503039465452!GO:0007052;mitotic spindle organization and biogenesis;0.000592060958064396!GO:0044440;endosomal part;0.000659093556936879!GO:0010008;endosome membrane;0.000659093556936879!GO:0008250;oligosaccharyl transferase complex;0.000664727104032487!GO:0004576;oligosaccharyl transferase activity;0.000692170701788752!GO:0032508;DNA duplex unwinding;0.000698197010079001!GO:0032392;DNA geometric change;0.000698197010079001!GO:0046474;glycerophospholipid biosynthetic process;0.000768104340787762!GO:0015992;proton transport;0.000775783509355398!GO:0005798;Golgi-associated vesicle;0.00078942654718546!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000790831525771351!GO:0016563;transcription activator activity;0.000838952145437173!GO:0032940;secretion by cell;0.000840687816852733!GO:0003711;transcription elongation regulator activity;0.000843695444772846!GO:0006818;hydrogen transport;0.000843695444772846!GO:0046489;phosphoinositide biosynthetic process;0.000889504544881404!GO:0045454;cell redox homeostasis;0.000891702618929334!GO:0031124;mRNA 3'-end processing;0.000904820492107994!GO:0006378;mRNA polyadenylation;0.000950872749131781!GO:0005637;nuclear inner membrane;0.000979151013078171!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010220492033679!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010220492033679!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010220492033679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00104234713535011!GO:0006268;DNA unwinding during replication;0.00104571589385045!GO:0006839;mitochondrial transport;0.0011575219907128!GO:0046914;transition metal ion binding;0.0012272771909443!GO:0005905;coated pit;0.00125436054300749!GO:0030880;RNA polymerase complex;0.00127642222181069!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0012822465404499!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00130647978618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00130647978618!GO:0007018;microtubule-based movement;0.00138074556928707!GO:0005793;ER-Golgi intermediate compartment;0.00138446982544588!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00140735626347324!GO:0015399;primary active transmembrane transporter activity;0.00140735626347324!GO:0032259;methylation;0.00154721863325508!GO:0008022;protein C-terminus binding;0.00154793229584897!GO:0003746;translation elongation factor activity;0.00154793229584897!GO:0046467;membrane lipid biosynthetic process;0.00161219661391517!GO:0016859;cis-trans isomerase activity;0.00164040823803059!GO:0043596;nuclear replication fork;0.00171712078384722!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017774266950558!GO:0042393;histone binding;0.001781303801742!GO:0000082;G1/S transition of mitotic cell cycle;0.00184495286538428!GO:0030135;coated vesicle;0.00187440158472052!GO:0008276;protein methyltransferase activity;0.00191657703142581!GO:0004003;ATP-dependent DNA helicase activity;0.00191978639684357!GO:0051920;peroxiredoxin activity;0.00192228721803158!GO:0040029;regulation of gene expression, epigenetic;0.00193754499315882!GO:0044454;nuclear chromosome part;0.00195257038510727!GO:0000819;sister chromatid segregation;0.00204446180226572!GO:0004527;exonuclease activity;0.00206546243541628!GO:0051539;4 iron, 4 sulfur cluster binding;0.0022008638560816!GO:0009056;catabolic process;0.0022832753613944!GO:0048500;signal recognition particle;0.00233910630500704!GO:0031123;RNA 3'-end processing;0.00243337130202319!GO:0008312;7S RNA binding;0.00259354791371117!GO:0009165;nucleotide biosynthetic process;0.00261593102471434!GO:0000070;mitotic sister chromatid segregation;0.00281702207743584!GO:0006284;base-excision repair;0.00281843909796303!GO:0006611;protein export from nucleus;0.00287275690330449!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00293802785172027!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000428;DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000049;tRNA binding;0.00293802785172027!GO:0000086;G2/M transition of mitotic cell cycle;0.00308061044005099!GO:0012501;programmed cell death;0.00325613394842135!GO:0005048;signal sequence binding;0.0032639454990307!GO:0048487;beta-tubulin binding;0.00326741897377079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332105783537226!GO:0003730;mRNA 3'-UTR binding;0.0033564212895643!GO:0008139;nuclear localization sequence binding;0.00342500826580918!GO:0043414;biopolymer methylation;0.00350923190425224!GO:0045892;negative regulation of transcription, DNA-dependent;0.00357454354272814!GO:0051052;regulation of DNA metabolic process;0.00359363337403962!GO:0006915;apoptosis;0.00361209233370785!GO:0006401;RNA catabolic process;0.00376431393889303!GO:0018196;peptidyl-asparagine modification;0.00379857852876576!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00379857852876576!GO:0006595;polyamine metabolic process;0.00379857852876576!GO:0006402;mRNA catabolic process;0.00386657508501779!GO:0032561;guanyl ribonucleotide binding;0.00391088692899831!GO:0019001;guanyl nucleotide binding;0.00391088692899831!GO:0051087;chaperone binding;0.0039196991789234!GO:0006270;DNA replication initiation;0.00397816003797284!GO:0016251;general RNA polymerase II transcription factor activity;0.00411022061834516!GO:0019899;enzyme binding;0.00446872331224052!GO:0000118;histone deacetylase complex;0.00449972381261039!GO:0016126;sterol biosynthetic process;0.00471031819394423!GO:0006891;intra-Golgi vesicle-mediated transport;0.00481277822419711!GO:0043631;RNA polyadenylation;0.00543236805222271!GO:0030867;rough endoplasmic reticulum membrane;0.00570374426955022!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00571166758652886!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00613503003125621!GO:0045047;protein targeting to ER;0.00613503003125621!GO:0006607;NLS-bearing substrate import into nucleus;0.00657607339067561!GO:0000725;recombinational repair;0.00660677272560909!GO:0000724;double-strand break repair via homologous recombination;0.00660677272560909!GO:0000339;RNA cap binding;0.00700753350611951!GO:0005885;Arp2/3 protein complex;0.00701167726138224!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00708602672646673!GO:0005741;mitochondrial outer membrane;0.00708747980281626!GO:0048523;negative regulation of cellular process;0.00718237362644954!GO:0004860;protein kinase inhibitor activity;0.00736638034353426!GO:0000790;nuclear chromatin;0.00737497692139164!GO:0008180;signalosome;0.00770948506138874!GO:0030131;clathrin adaptor complex;0.00778565195133419!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0080899205959029!GO:0030521;androgen receptor signaling pathway;0.00816964264297881!GO:0030119;AP-type membrane coat adaptor complex;0.00850843823700827!GO:0000922;spindle pole;0.0086536697554581!GO:0005769;early endosome;0.00866720916857841!GO:0005832;chaperonin-containing T-complex;0.00867991341155424!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00872184455325963!GO:0051246;regulation of protein metabolic process;0.00925154851746747!GO:0005770;late endosome;0.00925176147894797!GO:0000793;condensed chromosome;0.00972635307612627!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00972635307612627!GO:0015002;heme-copper terminal oxidase activity;0.00972635307612627!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00972635307612627!GO:0004129;cytochrome-c oxidase activity;0.00972635307612627!GO:0005663;DNA replication factor C complex;0.0101436380099114!GO:0008287;protein serine/threonine phosphatase complex;0.0102985039449324!GO:0006505;GPI anchor metabolic process;0.0103474455059132!GO:0019867;outer membrane;0.0104546589933667!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0105870920632978!GO:0000152;nuclear ubiquitin ligase complex;0.0106751603453569!GO:0005669;transcription factor TFIID complex;0.0107851457694788!GO:0031970;organelle envelope lumen;0.0109562457885695!GO:0000178;exosome (RNase complex);0.0112412169033415!GO:0016585;chromatin remodeling complex;0.0114743116650417!GO:0004532;exoribonuclease activity;0.0114880080738502!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0114880080738502!GO:0043492;ATPase activity, coupled to movement of substances;0.0114880080738502!GO:0043601;nuclear replisome;0.0115931214880257!GO:0030894;replisome;0.0115931214880257!GO:0051540;metal cluster binding;0.01219176064245!GO:0051536;iron-sulfur cluster binding;0.01219176064245!GO:0031968;organelle outer membrane;0.0126226330700363!GO:0016584;nucleosome positioning;0.0126242848851376!GO:0005758;mitochondrial intermembrane space;0.012795961024314!GO:0000910;cytokinesis;0.0128449370747029!GO:0016272;prefoldin complex;0.0128449370747029!GO:0015980;energy derivation by oxidation of organic compounds;0.013082171440974!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0131736751182423!GO:0016787;hydrolase activity;0.0131771019645246!GO:0006650;glycerophospholipid metabolic process;0.0132767929138499!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0133716411547285!GO:0042770;DNA damage response, signal transduction;0.013379744406161!GO:0006144;purine base metabolic process;0.013379744406161!GO:0022890;inorganic cation transmembrane transporter activity;0.0134542773141949!GO:0019783;small conjugating protein-specific protease activity;0.0135433704193959!GO:0030027;lamellipodium;0.013647992863808!GO:0030384;phosphoinositide metabolic process;0.0136523697623123!GO:0031252;leading edge;0.0136665732681113!GO:0006506;GPI anchor biosynthetic process;0.013751911955119!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0138519252880877!GO:0008219;cell death;0.0139173195570962!GO:0016265;death;0.0139173195570962!GO:0005869;dynactin complex;0.014202085385943!GO:0019887;protein kinase regulator activity;0.0143712975470631!GO:0005652;nuclear lamina;0.0147680862516679!GO:0031577;spindle checkpoint;0.0150445963921332!GO:0005680;anaphase-promoting complex;0.0150576529850631!GO:0030496;midbody;0.0150576529850631!GO:0030663;COPI coated vesicle membrane;0.0150576529850631!GO:0030126;COPI vesicle coat;0.0150576529850631!GO:0044430;cytoskeletal part;0.015115527669805!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0154644412179362!GO:0008092;cytoskeletal protein binding;0.0154971699883395!GO:0004843;ubiquitin-specific protease activity;0.0160527446210895!GO:0007264;small GTPase mediated signal transduction;0.0162408215389037!GO:0044450;microtubule organizing center part;0.0164652046697544!GO:0022406;membrane docking;0.0166458167579672!GO:0048278;vesicle docking;0.0166458167579672!GO:0009112;nucleobase metabolic process;0.0166715176590202!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0170985925596606!GO:0035267;NuA4 histone acetyltransferase complex;0.0173830837979829!GO:0008213;protein amino acid alkylation;0.0176249949619016!GO:0006479;protein amino acid methylation;0.0176249949619016!GO:0030137;COPI-coated vesicle;0.0176484469735074!GO:0030132;clathrin coat of coated pit;0.0180790011033976!GO:0030705;cytoskeleton-dependent intracellular transport;0.0182388764866321!GO:0005521;lamin binding;0.0187578521751963!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055083;monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055064;chloride ion homeostasis;0.0187769780334114!GO:0030644;cellular chloride ion homeostasis;0.0187769780334114!GO:0006376;mRNA splice site selection;0.0190580081718032!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190580081718032!GO:0008408;3'-5' exonuclease activity;0.0197859871055022!GO:0031570;DNA integrity checkpoint;0.0198242384243228!GO:0046966;thyroid hormone receptor binding;0.0198864591298295!GO:0004523;ribonuclease H activity;0.0199726185599418!GO:0000287;magnesium ion binding;0.0200561635712437!GO:0006695;cholesterol biosynthetic process;0.0206117796250109!GO:0000123;histone acetyltransferase complex;0.0209451766229761!GO:0043130;ubiquitin binding;0.0210089806628439!GO:0032182;small conjugating protein binding;0.0210089806628439!GO:0016311;dephosphorylation;0.0215087805883966!GO:0045936;negative regulation of phosphate metabolic process;0.021687514127808!GO:0004221;ubiquitin thiolesterase activity;0.0218150550253516!GO:0005881;cytoplasmic microtubule;0.0219274546582598!GO:0019843;rRNA binding;0.0219576828391439!GO:0005788;endoplasmic reticulum lumen;0.022440527329276!GO:0007021;tubulin folding;0.0224878822716043!GO:0004518;nuclease activity;0.0227408055775492!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0228540984983652!GO:0043624;cellular protein complex disassembly;0.0232249866948578!GO:0045815;positive regulation of gene expression, epigenetic;0.0237905366625309!GO:0016569;covalent chromatin modification;0.0240973826778027!GO:0032200;telomere organization and biogenesis;0.0240973826778027!GO:0000723;telomere maintenance;0.0240973826778027!GO:0030658;transport vesicle membrane;0.0247508372205747!GO:0009116;nucleoside metabolic process;0.0247776250273443!GO:0008536;Ran GTPase binding;0.0247954404013701!GO:0030176;integral to endoplasmic reticulum membrane;0.0251646906240977!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0253519629139877!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025561649123005!GO:0006406;mRNA export from nucleus;0.0259156917722856!GO:0006220;pyrimidine nucleotide metabolic process;0.0262129635424374!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0263407419276622!GO:0006904;vesicle docking during exocytosis;0.0263407419276622!GO:0009303;rRNA transcription;0.0266551079916801!GO:0043022;ribosome binding;0.026842192162081!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270636806508931!GO:0050178;phenylpyruvate tautomerase activity;0.0272878593115142!GO:0043433;negative regulation of transcription factor activity;0.0280284471009867!GO:0007004;telomere maintenance via telomerase;0.0281787562932584!GO:0006730;one-carbon compound metabolic process;0.0281930459569696!GO:0004721;phosphoprotein phosphatase activity;0.0287157776272515!GO:0030133;transport vesicle;0.0287772780290173!GO:0051287;NAD binding;0.0287772780290173!GO:0042026;protein refolding;0.0288545483307469!GO:0042054;histone methyltransferase activity;0.0288593281319412!GO:0006497;protein amino acid lipidation;0.0290878777372387!GO:0003923;GPI-anchor transamidase activity;0.0305284455322597!GO:0016255;attachment of GPI anchor to protein;0.0305284455322597!GO:0042765;GPI-anchor transamidase complex;0.0305284455322597!GO:0016790;thiolester hydrolase activity;0.0310647783929697!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0317499175209517!GO:0045039;protein import into mitochondrial inner membrane;0.0317499175209517!GO:0035258;steroid hormone receptor binding;0.0318364555615847!GO:0005720;nuclear heterochromatin;0.0318703291829516!GO:0032984;macromolecular complex disassembly;0.0321008574760944!GO:0016579;protein deubiquitination;0.0321008574760944!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0325458208952463!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0327341771879867!GO:0033170;DNA-protein loading ATPase activity;0.0327584490812197!GO:0003689;DNA clamp loader activity;0.0327584490812197!GO:0043284;biopolymer biosynthetic process;0.0328690594202874!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0330475925659432!GO:0030125;clathrin vesicle coat;0.0330475925659432!GO:0030665;clathrin coated vesicle membrane;0.0330475925659432!GO:0019210;kinase inhibitor activity;0.0331256112073865!GO:0005784;translocon complex;0.0335265001241118!GO:0009304;tRNA transcription;0.033573049962679!GO:0019207;kinase regulator activity;0.0336360125879759!GO:0005487;nucleocytoplasmic transporter activity;0.0337051095739264!GO:0019206;nucleoside kinase activity;0.0337051095739264!GO:0042791;5S class rRNA transcription;0.0337051095739264!GO:0000127;transcription factor TFIIIC complex;0.0337051095739264!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0337051095739264!GO:0042802;identical protein binding;0.033930902379881!GO:0045664;regulation of neuron differentiation;0.0347037509844179!GO:0033116;ER-Golgi intermediate compartment membrane;0.0348069493966566!GO:0006541;glutamine metabolic process;0.0355604344708604!GO:0032039;integrator complex;0.0357213653861586!GO:0042769;DNA damage response, detection of DNA damage;0.0360169464466559!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0360887798157018!GO:0000726;non-recombinational repair;0.0363217125658755!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0369715001470008!GO:0008088;axon cargo transport;0.0377585823851156!GO:0043241;protein complex disassembly;0.0379621383140311!GO:0006289;nucleotide-excision repair;0.0379634108942815!GO:0008143;poly(A) binding;0.0389191711545876!GO:0046112;nucleobase biosynthetic process;0.0408497454713907!GO:0005850;eukaryotic translation initiation factor 2 complex;0.041027260841404!GO:0042809;vitamin D receptor binding;0.0413247992579161!GO:0031371;ubiquitin conjugating enzyme complex;0.0415663453578565!GO:0008637;apoptotic mitochondrial changes;0.041660965239964!GO:0005732;small nucleolar ribonucleoprotein complex;0.0416814086717038!GO:0008538;proteasome activator activity;0.0430616033813997!GO:0043154;negative regulation of caspase activity;0.0437717873660049!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0438898508044277!GO:0009451;RNA modification;0.0439127599588858!GO:0051252;regulation of RNA metabolic process;0.0458918084962876!GO:0008601;protein phosphatase type 2A regulator activity;0.0464830163811562!GO:0008629;induction of apoptosis by intracellular signals;0.0464830163811562!GO:0000209;protein polyubiquitination;0.0465247674431006!GO:0006354;RNA elongation;0.0467220515717477!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0467220515717477!GO:0016417;S-acyltransferase activity;0.0468349500013667!GO:0051128;regulation of cellular component organization and biogenesis;0.0468349500013667!GO:0000303;response to superoxide;0.0471696075272035!GO:0030660;Golgi-associated vesicle membrane;0.0471696075272035!GO:0051789;response to protein stimulus;0.0476732214317288!GO:0006986;response to unfolded protein;0.0476732214317288!GO:0016279;protein-lysine N-methyltransferase activity;0.0482055807754664!GO:0018024;histone-lysine N-methyltransferase activity;0.0482055807754664!GO:0016278;lysine N-methyltransferase activity;0.0482055807754664!GO:0032594;protein transport within lipid bilayer;0.0483875427733068!GO:0032907;transforming growth factor-beta3 production;0.0483875427733068!GO:0032596;protein transport into lipid raft;0.0483875427733068!GO:0032910;regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0032595;B cell receptor transport within lipid bilayer;0.0483875427733068!GO:0033606;chemokine receptor transport within lipid bilayer;0.0483875427733068!GO:0032600;chemokine receptor transport out of lipid raft;0.0483875427733068!GO:0032599;protein transport out of lipid raft;0.0483875427733068!GO:0032597;B cell receptor transport into lipid raft;0.0483875427733068!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0042326;negative regulation of phosphorylation;0.0484092124556708!GO:0008652;amino acid biosynthetic process;0.0484092124556708!GO:0006916;anti-apoptosis;0.0485181063336009!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0485339075694788!GO:0003756;protein disulfide isomerase activity;0.0486466580931295!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0486466580931295 | |||
|sample_id=10844 | |sample_id=10844 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=POU6F1:3.76335713863;SOX{8,9,10}:3.28270620467;BREu{core}:3.16089337843;NKX2-3_NKX2-5:2.94445761357;NANOG:2.74576526173;TFDP1:2.54169461394;ADNP_IRX_SIX_ZHX:2.33685006144;NFY{A,B,C}:2.33400603659;MYOD1:2.30387308024;LMO2:2.06358489504;E2F1..5:2.04693724697;POU1F1:2.0210053614;LHX3,4:1.98547098942;NRF1:1.73809527491;ZNF143:1.73596491698;SOX17:1.70814019014;YY1:1.69736502642;HBP1_HMGB_SSRP1_UBTF:1.68669799058;PBX1:1.66373024443;AHR_ARNT_ARNT2:1.53463347837;ELK1,4_GABP{A,B1}:1.50388786447;ZEB1:1.47726958336;SNAI1..3:1.46637822582;VSX1,2:1.46036152042;NKX6-1,2:1.4074336104;SOX2:1.39984098484;HOX{A4,D4}:1.38773464672;PRRX1,2:1.33395051326;FOXQ1:1.32842975264;PAX3,7:1.32172242271;POU2F1..3:1.29543277648;GFI1:1.22601697;ONECUT1,2:1.155705998;PITX1..3:1.15046963274;PAX6:1.12287124138;FOXD3:1.12095320513;MED-1{core}:1.08483390917;POU5F1:1.06381108362;RFX2..5_RFXANK_RFXAP:1.06073294778;PATZ1:1.01081739354;RBPJ:0.993239946549;LEF1_TCF7_TCF7L1,2:0.991130375198;ATF4:0.984633930901;ARID5B:0.971233932648;PDX1:0.924892947364;FOXM1:0.922293034195;RFX1:0.917446742923;XCPE1{core}:0.900164070916;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.871913815168;ZFP161:0.860357039553;DBP:0.834046323377;JUN:0.831422854557;RREB1:0.808717560287;MTE{core}:0.793689043321;SOX5:0.790757150085;NHLH1,2:0.769850913452;FOXP1:0.73181288662;HOX{A6,A7,B6,B7}:0.698832605053;TFAP2B:0.693867139119;STAT1,3:0.692562139981;TGIF1:0.690688091475;MZF1:0.684956061088;IKZF2:0.64015087665;FOXL1:0.629147538333;EVI1:0.597133445344;CUX2:0.597030618851;HOXA9_MEIS1:0.595000798987;PAX8:0.589941051834;FOXA2:0.509869439405;NKX3-1:0.473862114029;PAX5:0.446801620731;HIC1:0.428996186595;REST:0.412062535609;TEF:0.392827285678;RORA:0.383965840713;ATF5_CREB3:0.379261365733;MTF1:0.377525627546;HSF1,2:0.353241605111;ZNF423:0.353158512685;GFI1B:0.347433566681;NKX2-1,4:0.34384331122;PAX4:0.33656631745;MYB:0.32499754418;NR5A1,2:0.301879133312;ATF2:0.27982581339;BPTF:0.269459334924;bHLH_family:0.26107885526;EGR1..3:0.25963314782;ZNF384:0.258108746005;AR:0.249453143754;FOX{F1,F2,J1}:0.245574066599;ZBTB6:0.232019251686;AIRE:0.227373780065;GTF2I:0.223571161162;OCT4_SOX2{dimer}:0.202480448789;HAND1,2:0.173517822984;NKX3-2:0.136271356924;STAT5{A,B}:0.102198879268;TAL1_TCF{3,4,12}:0.0837253463259;CDX1,2,4:0.0758125786262;FOX{D1,D2}:0.0473375467014;CDC5L:0.038159537485;MYFfamily:0.0338472237115;ESRRA:-0.0498313712265;ZBTB16:-0.0519778173233;UFEwm:-0.0627864901566;NR6A1:-0.0771168937077;HMX1:-0.0847876422148;PPARG:-0.0925205352855;POU3F1..4:-0.121516746102;EN1,2:-0.155936608555;CRX:-0.163842397654;TP53:-0.175085003174;HNF1A:-0.176649513172;ZIC1..3:-0.190736211435;SP1:-0.198466306544;PRDM1:-0.206122067403;GATA6:-0.207719757882;KLF4:-0.223857021845;CREB1:-0.227150323275;EBF1:-0.229504318285;GATA4:-0.235470997367;FOXP3:-0.23992518268;FOXN1:-0.243628184483;TOPORS:-0.27213676909;MEF2{A,B,C,D}:-0.272714021304;T:-0.285076220767;GTF2A1,2:-0.303776163858;GZF1:-0.362875524963;HES1:-0.371312449178;NFE2L2:-0.395717354835;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.408220941504;TLX1..3_NFIC{dimer}:-0.420671280334;HOX{A5,B5}:-0.430655924235;NR1H4:-0.437699300557;HNF4A_NR2F1,2:-0.450987821978;NKX2-2,8:-0.468073049273;MAZ:-0.47679728488;FOSL2:-0.501994363506;PAX1,9:-0.52680242036;TBX4,5:-0.539301328137;SREBF1,2:-0.542060609318;FOX{I1,J2}:-0.54988563519;ZNF238:-0.568468942848;HMGA1,2:-0.573211955033;PAX2:-0.579265862588;TBP:-0.614167912324;GCM1,2:-0.63691966067;FOS_FOS{B,L1}_JUN{B,D}:-0.657389713549;RUNX1..3:-0.657599513901;SPI1:-0.695143028587;NFIX:-0.696819873532;BACH2:-0.697687995026;NFKB1_REL_RELA:-0.725623162024;ELF1,2,4:-0.756417671659;NFE2:-0.759849578867;DMAP1_NCOR{1,2}_SMARC:-0.770254958328;HLF:-0.796686457449;FOXO1,3,4:-0.817237884215;NFIL3:-0.818322024479;SPIB:-0.83557306755;ALX1:-0.836517808532;EP300:-0.853659383746;SPZ1:-0.868894298385;NFE2L1:-0.938127798005;MAFB:-0.998919054222;TFAP4:-1.01500527906;ALX4:-1.01545101793;XBP1:-1.03520072484;NANOG{mouse}:-1.09918436751;ETS1,2:-1.10256639589;TEAD1:-1.10299363153;MYBL2:-1.12143933382;CEBPA,B_DDIT3:-1.12229709558;NR3C1:-1.13117443043;ATF6:-1.16503853179;SMAD1..7,9:-1.18398027351;IKZF1:-1.19116784248;TLX2:-1.24209222318;HIF1A:-1.26253148936;TFAP2{A,C}:-1.28681099951;IRF7:-1.35100198183;ZNF148:-1.37931753116;IRF1,2:-1.42625429224;GLI1..3:-1.45248654203;RXRA_VDR{dimer}:-1.588698446;ESR1:-1.64425513517;TFCP2:-1.65630408426;NFATC1..3:-1.75251773665;RXR{A,B,G}:-1.78357281927;STAT2,4,6:-1.86079650604;SRF:-1.92640370296 | |top_motifs=POU6F1:3.76335713863;SOX{8,9,10}:3.28270620467;BREu{core}:3.16089337843;NKX2-3_NKX2-5:2.94445761357;NANOG:2.74576526173;TFDP1:2.54169461394;ADNP_IRX_SIX_ZHX:2.33685006144;NFY{A,B,C}:2.33400603659;MYOD1:2.30387308024;LMO2:2.06358489504;E2F1..5:2.04693724697;POU1F1:2.0210053614;LHX3,4:1.98547098942;NRF1:1.73809527491;ZNF143:1.73596491698;SOX17:1.70814019014;YY1:1.69736502642;HBP1_HMGB_SSRP1_UBTF:1.68669799058;PBX1:1.66373024443;AHR_ARNT_ARNT2:1.53463347837;ELK1,4_GABP{A,B1}:1.50388786447;ZEB1:1.47726958336;SNAI1..3:1.46637822582;VSX1,2:1.46036152042;NKX6-1,2:1.4074336104;SOX2:1.39984098484;HOX{A4,D4}:1.38773464672;PRRX1,2:1.33395051326;FOXQ1:1.32842975264;PAX3,7:1.32172242271;POU2F1..3:1.29543277648;GFI1:1.22601697;ONECUT1,2:1.155705998;PITX1..3:1.15046963274;PAX6:1.12287124138;FOXD3:1.12095320513;MED-1{core}:1.08483390917;POU5F1:1.06381108362;RFX2..5_RFXANK_RFXAP:1.06073294778;PATZ1:1.01081739354;RBPJ:0.993239946549;LEF1_TCF7_TCF7L1,2:0.991130375198;ATF4:0.984633930901;ARID5B:0.971233932648;PDX1:0.924892947364;FOXM1:0.922293034195;RFX1:0.917446742923;XCPE1{core}:0.900164070916;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.871913815168;ZFP161:0.860357039553;DBP:0.834046323377;JUN:0.831422854557;RREB1:0.808717560287;MTE{core}:0.793689043321;SOX5:0.790757150085;NHLH1,2:0.769850913452;FOXP1:0.73181288662;HOX{A6,A7,B6,B7}:0.698832605053;TFAP2B:0.693867139119;STAT1,3:0.692562139981;TGIF1:0.690688091475;MZF1:0.684956061088;IKZF2:0.64015087665;FOXL1:0.629147538333;EVI1:0.597133445344;CUX2:0.597030618851;HOXA9_MEIS1:0.595000798987;PAX8:0.589941051834;FOXA2:0.509869439405;NKX3-1:0.473862114029;PAX5:0.446801620731;HIC1:0.428996186595;REST:0.412062535609;TEF:0.392827285678;RORA:0.383965840713;ATF5_CREB3:0.379261365733;MTF1:0.377525627546;HSF1,2:0.353241605111;ZNF423:0.353158512685;GFI1B:0.347433566681;NKX2-1,4:0.34384331122;PAX4:0.33656631745;MYB:0.32499754418;NR5A1,2:0.301879133312;ATF2:0.27982581339;BPTF:0.269459334924;bHLH_family:0.26107885526;EGR1..3:0.25963314782;ZNF384:0.258108746005;AR:0.249453143754;FOX{F1,F2,J1}:0.245574066599;ZBTB6:0.232019251686;AIRE:0.227373780065;GTF2I:0.223571161162;OCT4_SOX2{dimer}:0.202480448789;HAND1,2:0.173517822984;NKX3-2:0.136271356924;STAT5{A,B}:0.102198879268;TAL1_TCF{3,4,12}:0.0837253463259;CDX1,2,4:0.0758125786262;FOX{D1,D2}:0.0473375467014;CDC5L:0.038159537485;MYFfamily:0.0338472237115;ESRRA:-0.0498313712265;ZBTB16:-0.0519778173233;UFEwm:-0.0627864901566;NR6A1:-0.0771168937077;HMX1:-0.0847876422148;PPARG:-0.0925205352855;POU3F1..4:-0.121516746102;EN1,2:-0.155936608555;CRX:-0.163842397654;TP53:-0.175085003174;HNF1A:-0.176649513172;ZIC1..3:-0.190736211435;SP1:-0.198466306544;PRDM1:-0.206122067403;GATA6:-0.207719757882;KLF4:-0.223857021845;CREB1:-0.227150323275;EBF1:-0.229504318285;GATA4:-0.235470997367;FOXP3:-0.23992518268;FOXN1:-0.243628184483;TOPORS:-0.27213676909;MEF2{A,B,C,D}:-0.272714021304;T:-0.285076220767;GTF2A1,2:-0.303776163858;GZF1:-0.362875524963;HES1:-0.371312449178;NFE2L2:-0.395717354835;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.408220941504;TLX1..3_NFIC{dimer}:-0.420671280334;HOX{A5,B5}:-0.430655924235;NR1H4:-0.437699300557;HNF4A_NR2F1,2:-0.450987821978;NKX2-2,8:-0.468073049273;MAZ:-0.47679728488;FOSL2:-0.501994363506;PAX1,9:-0.52680242036;TBX4,5:-0.539301328137;SREBF1,2:-0.542060609318;FOX{I1,J2}:-0.54988563519;ZNF238:-0.568468942848;HMGA1,2:-0.573211955033;PAX2:-0.579265862588;TBP:-0.614167912324;GCM1,2:-0.63691966067;FOS_FOS{B,L1}_JUN{B,D}:-0.657389713549;RUNX1..3:-0.657599513901;SPI1:-0.695143028587;NFIX:-0.696819873532;BACH2:-0.697687995026;NFKB1_REL_RELA:-0.725623162024;ELF1,2,4:-0.756417671659;NFE2:-0.759849578867;DMAP1_NCOR{1,2}_SMARC:-0.770254958328;HLF:-0.796686457449;FOXO1,3,4:-0.817237884215;NFIL3:-0.818322024479;SPIB:-0.83557306755;ALX1:-0.836517808532;EP300:-0.853659383746;SPZ1:-0.868894298385;NFE2L1:-0.938127798005;MAFB:-0.998919054222;TFAP4:-1.01500527906;ALX4:-1.01545101793;XBP1:-1.03520072484;NANOG{mouse}:-1.09918436751;ETS1,2:-1.10256639589;TEAD1:-1.10299363153;MYBL2:-1.12143933382;CEBPA,B_DDIT3:-1.12229709558;NR3C1:-1.13117443043;ATF6:-1.16503853179;SMAD1..7,9:-1.18398027351;IKZF1:-1.19116784248;TLX2:-1.24209222318;HIF1A:-1.26253148936;TFAP2{A,C}:-1.28681099951;IRF7:-1.35100198183;ZNF148:-1.37931753116;IRF1,2:-1.42625429224;GLI1..3:-1.45248654203;RXRA_VDR{dimer}:-1.588698446;ESR1:-1.64425513517;TFCP2:-1.65630408426;NFATC1..3:-1.75251773665;RXR{A,B,G}:-1.78357281927;STAT2,4,6:-1.86079650604;SRF:-1.92640370296 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10844-111E7;search_select_hide=table117:FF:10844-111E7 | |||
}} | }} | ||
Latest revision as of 15:09, 3 June 2020
| Name: | merkel cell carcinoma cell line:MS-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12839 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12839
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12839
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0853 |
| 10 | 10 | 0.125 |
| 100 | 100 | 0.704 |
| 101 | 101 | 0.268 |
| 102 | 102 | 0.583 |
| 103 | 103 | 0.086 |
| 104 | 104 | 0.532 |
| 105 | 105 | 0.54 |
| 106 | 106 | 0.00178 |
| 107 | 107 | 0.0433 |
| 108 | 108 | 0.657 |
| 109 | 109 | 0.0337 |
| 11 | 11 | 0.0651 |
| 110 | 110 | 0.382 |
| 111 | 111 | 0.157 |
| 112 | 112 | 0.124 |
| 113 | 113 | 0.708 |
| 114 | 114 | 0.0162 |
| 115 | 115 | 0.531 |
| 116 | 116 | 0.416 |
| 117 | 117 | 0.197 |
| 118 | 118 | 0.37 |
| 119 | 119 | 0.269 |
| 12 | 12 | 0.856 |
| 120 | 120 | 0.778 |
| 121 | 121 | 0.655 |
| 122 | 122 | 0.495 |
| 123 | 123 | 0.713 |
| 124 | 124 | 0.448 |
| 125 | 125 | 0.913 |
| 126 | 126 | 0.187 |
| 127 | 127 | 0.198 |
| 128 | 128 | 0.0144 |
| 129 | 129 | 0.334 |
| 13 | 13 | 0.197 |
| 130 | 130 | 0.569 |
| 131 | 131 | 0.174 |
| 132 | 132 | 0.811 |
| 133 | 133 | 0.606 |
| 134 | 134 | 0.792 |
| 135 | 135 | 0.07 |
| 136 | 136 | 0.899 |
| 137 | 137 | 0.31 |
| 138 | 138 | 0.212 |
| 139 | 139 | 0.126 |
| 14 | 14 | 0.662 |
| 140 | 140 | 0.272 |
| 141 | 141 | 0.692 |
| 142 | 142 | 0.276 |
| 143 | 143 | 0.0142 |
| 144 | 144 | 0.577 |
| 145 | 145 | 0.117 |
| 146 | 146 | 0.966 |
| 147 | 147 | 0.788 |
| 148 | 148 | 0.0545 |
| 149 | 149 | 0.0184 |
| 15 | 15 | 0.167 |
| 150 | 150 | 0.626 |
| 151 | 151 | 0.333 |
| 152 | 152 | 0.0166 |
| 153 | 153 | 0.206 |
| 154 | 154 | 0.797 |
| 155 | 155 | 0.913 |
| 156 | 156 | 0.984 |
| 157 | 157 | 0.35 |
| 158 | 158 | 0.813 |
| 159 | 159 | 0.834 |
| 16 | 16 | 0.104 |
| 160 | 160 | 0.379 |
| 161 | 161 | 0.493 |
| 162 | 162 | 0.885 |
| 163 | 163 | 0.238 |
| 164 | 164 | 0.123 |
| 165 | 165 | 0.0855 |
| 166 | 166 | 0.622 |
| 167 | 167 | 0.352 |
| 168 | 168 | 0.0499 |
| 169 | 169 | 0.00953 |
| 17 | 17 | 0.21 |
| 18 | 18 | 0.227 |
| 19 | 19 | 0.0506 |
| 2 | 2 | 0.412 |
| 20 | 20 | 0.906 |
| 21 | 21 | 0.0928 |
| 22 | 22 | 0.0882 |
| 23 | 23 | 0.00635 |
| 24 | 24 | 0.293 |
| 25 | 25 | 0.868 |
| 26 | 26 | 0.244 |
| 27 | 27 | 0.489 |
| 28 | 28 | 0.888 |
| 29 | 29 | 0.452 |
| 3 | 3 | 0.0308 |
| 30 | 30 | 0.747 |
| 31 | 31 | 0.375 |
| 32 | 32 | 0.00255 |
| 33 | 33 | 0.412 |
| 34 | 34 | 0.408 |
| 35 | 35 | 0.641 |
| 36 | 36 | 0.652 |
| 37 | 37 | 0.0472 |
| 38 | 38 | 0.44 |
| 39 | 39 | 0.244 |
| 4 | 4 | 0.717 |
| 40 | 40 | 0.48 |
| 41 | 41 | 0.331 |
| 42 | 42 | 0.257 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.332 |
| 45 | 45 | 0.382 |
| 46 | 46 | 0.238 |
| 47 | 47 | 0.363 |
| 48 | 48 | 0.269 |
| 49 | 49 | 0.194 |
| 5 | 5 | 0.0978 |
| 50 | 50 | 0.216 |
| 51 | 51 | 0.4 |
| 52 | 52 | 0.156 |
| 53 | 53 | 0.448 |
| 54 | 54 | 0.173 |
| 55 | 55 | 0.0194 |
| 56 | 56 | 0.559 |
| 57 | 57 | 0.548 |
| 58 | 58 | 0.345 |
| 59 | 59 | 0.0663 |
| 6 | 6 | 0.439 |
| 60 | 60 | 0.013 |
| 61 | 61 | 0.366 |
| 62 | 62 | 0.114 |
| 63 | 63 | 0.0812 |
| 64 | 64 | 0.753 |
| 65 | 65 | 0.173 |
| 66 | 66 | 0.466 |
| 67 | 67 | 0.934 |
| 68 | 68 | 0.819 |
| 69 | 69 | 0.873 |
| 7 | 7 | 0.391 |
| 70 | 70 | 0.0286 |
| 71 | 71 | 0.075 |
| 72 | 72 | 0.25 |
| 73 | 73 | 0.0134 |
| 74 | 74 | 0.247 |
| 75 | 75 | 0.0808 |
| 76 | 76 | 0.577 |
| 77 | 77 | 0.109 |
| 78 | 78 | 0.263 |
| 79 | 79 | 0.0522 |
| 8 | 8 | 0.167 |
| 80 | 80 | 0.064 |
| 81 | 81 | 0.256 |
| 82 | 82 | 0.0853 |
| 83 | 83 | 0.547 |
| 84 | 84 | 0.552 |
| 85 | 85 | 0.00701 |
| 86 | 86 | 0.291 |
| 87 | 87 | 0.429 |
| 88 | 88 | 0.873 |
| 89 | 89 | 0.0679 |
| 9 | 9 | 0.339 |
| 90 | 90 | 0.0717 |
| 91 | 91 | 0.126 |
| 92 | 92 | 0.0444 |
| 93 | 93 | 0.918 |
| 94 | 94 | 0.0924 |
| 95 | 95 | 0.131 |
| 96 | 96 | 0.162 |
| 97 | 97 | 0.87 |
| 98 | 98 | 0.222 |
| 99 | 99 | 0.646 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12839
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000242 Merkel cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)
