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{{f5samples
{{f5samples
|id=FF:10844-111E7
|DRA_sample_Accession=CAGE@SAMD00005928
|name=merkel cell carcinoma cell line:MS-1, biol_rep1
|accession_numbers=CAGE;DRX007934;DRR008806;DRZ000231;DRZ001616;DRZ011581;DRZ012966
|sample_id=10844
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|rna_tube_id=111E7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002319,CL:0000095,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000123,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0000242
|rna_box=111
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|rna_position=E7
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|sample_cell_lot=
|comment=
|sample_cell_catalog=9111802.00000
|created_by=
|sample_company=ECACC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000133,CL:0000357,CL:0000114,CL:0000221
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=unknown
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=1.86000
|rna_od260/280=2.05000
|sample_cell_type=merkel cell
|sample_cell_line=MS-1
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=merkel cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=8.88165
|rna_concentration=0.32895
|sample_note=
|profile_hcage=CNhs12839,LSID973,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000036,CL:0000063,CL:0000066,CL:0000076,CL:0000079,CL:0000095,CL:0000114,CL:0000123,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000237,CL:0000240,CL:0000242,CL:0000255,CL:0000311,CL:0000312,CL:0000325,CL:0000333,CL:0000357,CL:0000362,CL:0000548,CL:0000723,CL:0002077,CL:0002159,CL:0002319,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007376,UBERON:0007383
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
|sample_description=
 
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.ctss.bed.gz
|id=FF:10844-111E7
|is_a=CL:0000242;;EFO:0002091;;FF:0000210;;FF:0100297
|is_obsolete=
|library_id=CNhs12839
|library_id_phase_based=2:CNhs12839
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10844
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10844
|name=merkel cell carcinoma cell line:MS-1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12839,LSID973,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=111
|rna_catalog_number=
|rna_concentration=0.32895
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.86
|rna_od260/280=2.05
|rna_position=E7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.11E+09
|rna_weight_ug=8.88165
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=9111802
|sample_cell_line=MS-1
|sample_cell_lot=
|sample_cell_type=merkel cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ECACC
|sample_description=
|sample_dev_stage=
|sample_disease=merkel cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42232391687662e-304!GO:0043226;organelle;6.88493266351785e-275!GO:0043229;intracellular organelle;2.38778402061046e-274!GO:0043231;intracellular membrane-bound organelle;6.29521154315307e-270!GO:0043227;membrane-bound organelle;1.1126426920878e-269!GO:0005634;nucleus;8.97829107531225e-168!GO:0044422;organelle part;2.10283849634498e-159!GO:0044446;intracellular organelle part;1.9279037908986e-158!GO:0005737;cytoplasm;2.04096152916797e-135!GO:0044237;cellular metabolic process;6.75980993136182e-114!GO:0043170;macromolecule metabolic process;8.1938830640438e-112!GO:0044238;primary metabolic process;1.83915585851213e-111!GO:0032991;macromolecular complex;2.2047255190177e-108!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.78037459421321e-103!GO:0043283;biopolymer metabolic process;1.24976485266656e-96!GO:0010467;gene expression;3.39162574632171e-95!GO:0044428;nuclear part;3.8510841100519e-95!GO:0044444;cytoplasmic part;7.81749622357827e-89!GO:0030529;ribonucleoprotein complex;2.38651047822261e-86!GO:0003723;RNA binding;7.87335832479666e-79!GO:0043233;organelle lumen;2.46609905426969e-77!GO:0031974;membrane-enclosed lumen;2.46609905426969e-77!GO:0003676;nucleic acid binding;2.91745253634214e-76!GO:0016070;RNA metabolic process;5.52309899351765e-65!GO:0006396;RNA processing;3.45246732437343e-59!GO:0005515;protein binding;2.28215623182594e-58!GO:0043234;protein complex;5.39208912853924e-56!GO:0016043;cellular component organization and biogenesis;5.87165608796644e-56!GO:0031981;nuclear lumen;3.4852226277377e-54!GO:0005739;mitochondrion;3.83552740671415e-54!GO:0006996;organelle organization and biogenesis;4.89089572227346e-48!GO:0006259;DNA metabolic process;7.15278478044381e-47!GO:0016071;mRNA metabolic process;1.67607372157531e-46!GO:0043228;non-membrane-bound organelle;2.08724082660346e-46!GO:0043232;intracellular non-membrane-bound organelle;2.08724082660346e-46!GO:0005840;ribosome;4.06700660089486e-46!GO:0008380;RNA splicing;5.79382984576126e-44!GO:0006397;mRNA processing;5.13033241932201e-41!GO:0031090;organelle membrane;9.66971957320859e-40!GO:0033036;macromolecule localization;1.80264635859046e-38!GO:0003735;structural constituent of ribosome;1.81684703939696e-38!GO:0031967;organelle envelope;2.31199873154022e-38!GO:0044429;mitochondrial part;2.72545708777787e-38!GO:0031975;envelope;3.36045042109487e-38!GO:0015031;protein transport;4.58469054224418e-38!GO:0006412;translation;2.31217543130691e-37!GO:0007049;cell cycle;9.44705356498717e-37!GO:0033279;ribosomal subunit;4.51603790540132e-35!GO:0005654;nucleoplasm;4.08990838044372e-34!GO:0008104;protein localization;9.518241053147e-34!GO:0046907;intracellular transport;1.12389598379761e-33!GO:0045184;establishment of protein localization;2.91294695154502e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.59673429931243e-31!GO:0005694;chromosome;1.38292676414432e-30!GO:0005681;spliceosome;2.44802676706085e-30!GO:0065003;macromolecular complex assembly;4.43772323724356e-30!GO:0022402;cell cycle process;5.96104031249737e-29!GO:0000166;nucleotide binding;8.73836659296577e-29!GO:0044451;nucleoplasm part;2.09871266688938e-28!GO:0009059;macromolecule biosynthetic process;3.02200775831982e-28!GO:0000278;mitotic cell cycle;3.67800511879777e-28!GO:0051649;establishment of cellular localization;4.58359575007684e-28!GO:0019538;protein metabolic process;6.14320066311274e-28!GO:0051641;cellular localization;2.9337823133768e-27!GO:0022607;cellular component assembly;3.01968205788653e-27!GO:0009058;biosynthetic process;3.42637890555703e-27!GO:0006350;transcription;3.83724343028903e-27!GO:0051276;chromosome organization and biogenesis;1.12944819959185e-26!GO:0044249;cellular biosynthetic process;1.43801214844543e-26!GO:0044267;cellular protein metabolic process;1.63871124351616e-26!GO:0006974;response to DNA damage stimulus;1.65673781151688e-26!GO:0019222;regulation of metabolic process;1.29100913487713e-25!GO:0044260;cellular macromolecule metabolic process;1.65808583278931e-25!GO:0044427;chromosomal part;1.6888710659053e-25!GO:0006886;intracellular protein transport;2.19402225784924e-25!GO:0022403;cell cycle phase;4.38236123840402e-25!GO:0019866;organelle inner membrane;1.07298643787061e-24!GO:0006281;DNA repair;1.21758053602624e-24!GO:0005740;mitochondrial envelope;5.98423416493055e-24!GO:0032774;RNA biosynthetic process;6.13688399199701e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.42596894455122e-24!GO:0005829;cytosol;1.00669802786502e-23!GO:0006351;transcription, DNA-dependent;1.00778206055967e-23!GO:0000087;M phase of mitotic cell cycle;1.88547725029653e-23!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03151135184536e-23!GO:0007067;mitosis;6.38155987321072e-23!GO:0006119;oxidative phosphorylation;7.12225753652512e-23!GO:0031323;regulation of cellular metabolic process;1.0025324455578e-22!GO:0010468;regulation of gene expression;1.04484619729577e-22!GO:0016462;pyrophosphatase activity;1.11842641924798e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.64146002659847e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8911003902214e-22!GO:0017111;nucleoside-triphosphatase activity;1.90606563163943e-22!GO:0031966;mitochondrial membrane;2.01376205234061e-22!GO:0005743;mitochondrial inner membrane;3.17767926579501e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;9.76363888839655e-22!GO:0003677;DNA binding;1.10241468905626e-21!GO:0044455;mitochondrial membrane part;1.72155877992994e-21!GO:0045449;regulation of transcription;2.29401060633165e-21!GO:0000279;M phase;2.39169358508341e-21!GO:0006323;DNA packaging;8.46266997114959e-21!GO:0044445;cytosolic part;2.73252034616055e-20!GO:0005730;nucleolus;4.20200644878766e-20!GO:0006355;regulation of transcription, DNA-dependent;5.26487248666361e-20!GO:0032553;ribonucleotide binding;1.60191958834008e-19!GO:0032555;purine ribonucleotide binding;1.60191958834008e-19!GO:0050794;regulation of cellular process;3.70163818620356e-19!GO:0051301;cell division;6.70126517263446e-19!GO:0006260;DNA replication;9.36031825958134e-19!GO:0005524;ATP binding;1.37375619112001e-18!GO:0015935;small ribosomal subunit;2.20963884791166e-18!GO:0006512;ubiquitin cycle;2.63241626662584e-18!GO:0022618;protein-RNA complex assembly;6.31163455792876e-18!GO:0017076;purine nucleotide binding;7.04825211479492e-18!GO:0015934;large ribosomal subunit;7.07499288807601e-18!GO:0032559;adenyl ribonucleotide binding;8.68139599666726e-18!GO:0031980;mitochondrial lumen;1.65840996058339e-17!GO:0005759;mitochondrial matrix;1.65840996058339e-17!GO:0005746;mitochondrial respiratory chain;2.1883679584857e-17!GO:0015630;microtubule cytoskeleton;4.25933342292515e-17!GO:0008134;transcription factor binding;9.92903213600195e-17!GO:0016874;ligase activity;1.20331513038591e-16!GO:0031965;nuclear membrane;1.22149936878658e-16!GO:0012505;endomembrane system;1.78639459058743e-16!GO:0008135;translation factor activity, nucleic acid binding;1.8101404748957e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.94637586052227e-16!GO:0003954;NADH dehydrogenase activity;3.94637586052227e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.94637586052227e-16!GO:0009719;response to endogenous stimulus;4.73533704703189e-16!GO:0030554;adenyl nucleotide binding;6.53351270125453e-16!GO:0016887;ATPase activity;8.42248622831086e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91384197474762e-15!GO:0000375;RNA splicing, via transesterification reactions;1.91384197474762e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91384197474762e-15!GO:0005635;nuclear envelope;1.99787858993122e-15!GO:0042623;ATPase activity, coupled;4.28752123652444e-15!GO:0006457;protein folding;4.75739047294674e-15!GO:0016604;nuclear body;5.46025011139274e-15!GO:0044453;nuclear membrane part;1.15852492684731e-14!GO:0050789;regulation of biological process;1.49190345333145e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.55291784050816e-14!GO:0019941;modification-dependent protein catabolic process;1.82183479909455e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.82183479909455e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.40668355115289e-14!GO:0005761;mitochondrial ribosome;2.70307324446417e-14!GO:0000313;organellar ribosome;2.70307324446417e-14!GO:0000785;chromatin;2.73666780106343e-14!GO:0042254;ribosome biogenesis and assembly;3.30381129901561e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.32508257049917e-14!GO:0006333;chromatin assembly or disassembly;3.37207282948299e-14!GO:0044257;cellular protein catabolic process;4.6034052898065e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.31071508503487e-14!GO:0045271;respiratory chain complex I;6.31071508503487e-14!GO:0005747;mitochondrial respiratory chain complex I;6.31071508503487e-14!GO:0005643;nuclear pore;8.42910587736611e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0042773;ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0016568;chromatin modification;1.00355724797163e-13!GO:0044265;cellular macromolecule catabolic process;1.35752497108134e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.16828389502184e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.04114198865006e-13!GO:0006403;RNA localization;4.10478465844841e-13!GO:0006605;protein targeting;4.75904748249582e-13!GO:0050657;nucleic acid transport;5.46669800944479e-13!GO:0051236;establishment of RNA localization;5.46669800944479e-13!GO:0050658;RNA transport;5.46669800944479e-13!GO:0065004;protein-DNA complex assembly;6.06877069377194e-13!GO:0004386;helicase activity;6.33972880964609e-13!GO:0016607;nuclear speck;9.15085498240473e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47327498550752e-12!GO:0006366;transcription from RNA polymerase II promoter;1.48063274314161e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.75351221868533e-12!GO:0043285;biopolymer catabolic process;3.34750630538258e-12!GO:0051082;unfolded protein binding;4.47637134556112e-12!GO:0051726;regulation of cell cycle;6.1621946896305e-12!GO:0008026;ATP-dependent helicase activity;6.17001416343389e-12!GO:0043412;biopolymer modification;7.98482271799176e-12!GO:0003743;translation initiation factor activity;9.32570211020511e-12!GO:0000074;regulation of progression through cell cycle;1.70782474477933e-11!GO:0048770;pigment granule;2.30036166909891e-11!GO:0042470;melanosome;2.30036166909891e-11!GO:0005794;Golgi apparatus;2.55818813970635e-11!GO:0008565;protein transporter activity;3.67619448090602e-11!GO:0051028;mRNA transport;5.94545582049381e-11!GO:0030163;protein catabolic process;6.32861892198464e-11!GO:0006399;tRNA metabolic process;6.45545417329368e-11!GO:0006413;translational initiation;6.71166065585475e-11!GO:0016192;vesicle-mediated transport;9.57488582041754e-11!GO:0009057;macromolecule catabolic process;1.3384187471534e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.73190969251034e-10!GO:0046930;pore complex;1.85283012416987e-10!GO:0065002;intracellular protein transport across a membrane;2.15083641344675e-10!GO:0003712;transcription cofactor activity;2.42998086537161e-10!GO:0006261;DNA-dependent DNA replication;2.48553412666725e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.51764500592103e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.62166282872905e-10!GO:0006913;nucleocytoplasmic transport;2.69307320407937e-10!GO:0006446;regulation of translational initiation;2.73270489314924e-10!GO:0019829;cation-transporting ATPase activity;2.73270489314924e-10!GO:0005874;microtubule;2.94380577546081e-10!GO:0000775;chromosome, pericentric region;3.55145436977056e-10!GO:0006464;protein modification process;3.5979378492829e-10!GO:0005819;spindle;4.07800941028563e-10!GO:0043566;structure-specific DNA binding;4.82748257869232e-10!GO:0006364;rRNA processing;5.17560701523622e-10!GO:0051169;nuclear transport;5.81660380627613e-10!GO:0006163;purine nucleotide metabolic process;7.05523161281394e-10!GO:0009259;ribonucleotide metabolic process;8.13484488544562e-10!GO:0016072;rRNA metabolic process;8.13484488544562e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.22830296918054e-09!GO:0048193;Golgi vesicle transport;1.44216427532405e-09!GO:0051186;cofactor metabolic process;1.78430905290202e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01264937515222e-09!GO:0007017;microtubule-based process;2.32737087776991e-09!GO:0003697;single-stranded DNA binding;2.44891487883849e-09!GO:0009141;nucleoside triphosphate metabolic process;4.59646782341983e-09!GO:0006334;nucleosome assembly;4.64373947008272e-09!GO:0043687;post-translational protein modification;4.70228723751788e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.76643293333032e-09!GO:0009150;purine ribonucleotide metabolic process;4.99425856074368e-09!GO:0031497;chromatin assembly;6.85914992891284e-09!GO:0006164;purine nucleotide biosynthetic process;7.69252809522031e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.19372369710031e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0015986;ATP synthesis coupled proton transport;1.56418921562735e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.56418921562735e-08!GO:0009260;ribonucleotide biosynthetic process;1.711018521564e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.18920003918694e-08!GO:0046034;ATP metabolic process;2.25687567984769e-08!GO:0016779;nucleotidyltransferase activity;3.31068781713302e-08!GO:0009060;aerobic respiration;4.02266358956265e-08!GO:0008639;small protein conjugating enzyme activity;4.06563553373696e-08!GO:0051329;interphase of mitotic cell cycle;4.28145722470644e-08!GO:0017038;protein import;4.50346023466408e-08!GO:0003682;chromatin binding;4.64952889800717e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.47060921121138e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0000075;cell cycle checkpoint;5.82117465525987e-08!GO:0044248;cellular catabolic process;5.96150616170326e-08!GO:0008094;DNA-dependent ATPase activity;6.97466182720897e-08!GO:0004842;ubiquitin-protein ligase activity;7.27009494288585e-08!GO:0019787;small conjugating protein ligase activity;7.76109184510992e-08!GO:0009055;electron carrier activity;8.35518064213031e-08!GO:0051325;interphase;9.20677160444579e-08!GO:0006732;coenzyme metabolic process;9.84024694481255e-08!GO:0065007;biological regulation;1.32329509344784e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.61701132624965e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.61701132624965e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.61701132624965e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0003899;DNA-directed RNA polymerase activity;2.23265994400353e-07!GO:0000245;spliceosome assembly;2.29275597362386e-07!GO:0044431;Golgi apparatus part;2.32254833850933e-07!GO:0006754;ATP biosynthetic process;2.36437301296924e-07!GO:0006753;nucleoside phosphate metabolic process;2.36437301296924e-07!GO:0007051;spindle organization and biogenesis;2.42778608097253e-07!GO:0005667;transcription factor complex;2.83081818232535e-07!GO:0043623;cellular protein complex assembly;3.07295493509972e-07!GO:0045333;cellular respiration;3.4965177443902e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.94191559321235e-07!GO:0016881;acid-amino acid ligase activity;5.47808794477903e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.49229942200943e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.02968171295658e-07!GO:0043038;amino acid activation;6.46264650431073e-07!GO:0006418;tRNA aminoacylation for protein translation;6.46264650431073e-07!GO:0043039;tRNA aminoacylation;6.46264650431073e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.50218380115531e-07!GO:0045259;proton-transporting ATP synthase complex;7.54406066883874e-07!GO:0005657;replication fork;8.0527272283455e-07!GO:0003724;RNA helicase activity;8.0527272283455e-07!GO:0005813;centrosome;8.73923057774299e-07!GO:0007059;chromosome segregation;8.79471006073091e-07!GO:0032446;protein modification by small protein conjugation;1.06800405697088e-06!GO:0045045;secretory pathway;1.19498054374739e-06!GO:0031988;membrane-bound vesicle;1.24299082278518e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.36216763585076e-06!GO:0007010;cytoskeleton organization and biogenesis;1.49615162821261e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.77049921135909e-06!GO:0048475;coated membrane;1.85878673330511e-06!GO:0030117;membrane coat;1.85878673330511e-06!GO:0005815;microtubule organizing center;1.90002110785323e-06!GO:0006099;tricarboxylic acid cycle;2.00161480701965e-06!GO:0046356;acetyl-CoA catabolic process;2.00161480701965e-06!GO:0031982;vesicle;2.05115869381238e-06!GO:0008270;zinc ion binding;2.57854719748324e-06!GO:0031410;cytoplasmic vesicle;2.69154243353043e-06!GO:0016567;protein ubiquitination;2.74226227243696e-06!GO:0044432;endoplasmic reticulum part;2.80286864665146e-06!GO:0016564;transcription repressor activity;3.12537632414019e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.53268783978544e-06!GO:0006752;group transfer coenzyme metabolic process;4.23508361292683e-06!GO:0006084;acetyl-CoA metabolic process;4.87576452100227e-06!GO:0005783;endoplasmic reticulum;6.0808916058472e-06!GO:0015631;tubulin binding;6.23040298274207e-06!GO:0003729;mRNA binding;7.68247228249314e-06!GO:0006461;protein complex assembly;7.75151155510488e-06!GO:0007005;mitochondrion organization and biogenesis;8.40608275611576e-06!GO:0000151;ubiquitin ligase complex;9.32112534750979e-06!GO:0016363;nuclear matrix;1.03365124661162e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.05329758864068e-05!GO:0051188;cofactor biosynthetic process;1.08887027417372e-05!GO:0005762;mitochondrial large ribosomal subunit;1.35252220562773e-05!GO:0000315;organellar large ribosomal subunit;1.35252220562773e-05!GO:0006383;transcription from RNA polymerase III promoter;1.41783397294496e-05!GO:0016740;transferase activity;1.45130219966581e-05!GO:0000139;Golgi membrane;1.55224721499607e-05!GO:0051168;nuclear export;1.58957848624594e-05!GO:0031324;negative regulation of cellular metabolic process;2.15533063807651e-05!GO:0003714;transcription corepressor activity;2.15814202231253e-05!GO:0006613;cotranslational protein targeting to membrane;2.21325677036727e-05!GO:0000228;nuclear chromosome;2.25583350324438e-05!GO:0008186;RNA-dependent ATPase activity;2.36794471538336e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.93840812453099e-05!GO:0009892;negative regulation of metabolic process;3.05100100629904e-05!GO:0006793;phosphorus metabolic process;3.23958563308963e-05!GO:0006796;phosphate metabolic process;3.23958563308963e-05!GO:0000776;kinetochore;3.31805799053505e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.39133754052964e-05!GO:0009109;coenzyme catabolic process;3.43655823749505e-05!GO:0006302;double-strand break repair;3.50407120682181e-05!GO:0051170;nuclear import;4.06101537422624e-05!GO:0009117;nucleotide metabolic process;4.54311129870015e-05!GO:0000314;organellar small ribosomal subunit;5.52316807510854e-05!GO:0005763;mitochondrial small ribosomal subunit;5.52316807510854e-05!GO:0003713;transcription coactivator activity;5.62203417767921e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.79735793609225e-05!GO:0003924;GTPase activity;5.91569677545063e-05!GO:0008033;tRNA processing;5.94592635714913e-05!GO:0003678;DNA helicase activity;6.42344570751494e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.48013547483617e-05!GO:0030120;vesicle coat;6.48013547483617e-05!GO:0030662;coated vesicle membrane;6.48013547483617e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.76102564096506e-05!GO:0009108;coenzyme biosynthetic process;6.76102564096506e-05!GO:0007088;regulation of mitosis;6.76102564096506e-05!GO:0006606;protein import into nucleus;7.01628401803219e-05!GO:0004004;ATP-dependent RNA helicase activity;7.73080819956239e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.98501182549096e-05!GO:0000059;protein import into nucleus, docking;8.2535178296864e-05!GO:0005768;endosome;8.53754170486746e-05!GO:0005789;endoplasmic reticulum membrane;8.75085540853381e-05!GO:0003702;RNA polymerase II transcription factor activity;9.61019445693155e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000152222297070806!GO:0007093;mitotic cell cycle checkpoint;0.000153241784739267!GO:0003690;double-stranded DNA binding;0.000160914561067195!GO:0005839;proteasome core complex (sensu Eukaryota);0.00016141396358379!GO:0044452;nucleolar part;0.000164049490901084!GO:0006352;transcription initiation;0.000170724741399659!GO:0016481;negative regulation of transcription;0.000173988123919727!GO:0051187;cofactor catabolic process;0.000175399085954529!GO:0006338;chromatin remodeling;0.000180394690872088!GO:0016310;phosphorylation;0.000187677335563467!GO:0003684;damaged DNA binding;0.000197268783120365!GO:0051427;hormone receptor binding;0.000199878900132902!GO:0048471;perinuclear region of cytoplasm;0.000216383585289775!GO:0004674;protein serine/threonine kinase activity;0.000231693654835082!GO:0008654;phospholipid biosynthetic process;0.000239925411742729!GO:0005876;spindle microtubule;0.000260209535210899!GO:0016741;transferase activity, transferring one-carbon groups;0.000266305021795658!GO:0005875;microtubule associated complex;0.000266916300324633!GO:0043681;protein import into mitochondrion;0.000271411857821027!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000282222474546797!GO:0005684;U2-dependent spliceosome;0.000283361055641653!GO:0008017;microtubule binding;0.00028355187033816!GO:0043021;ribonucleoprotein binding;0.000291957089704955!GO:0006612;protein targeting to membrane;0.000303946957449164!GO:0008168;methyltransferase activity;0.00031243295654634!GO:0045786;negative regulation of progression through cell cycle;0.000316406999881504!GO:0000786;nucleosome;0.00032350727882274!GO:0006414;translational elongation;0.00035184809740207!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00035951579263366!GO:0007006;mitochondrial membrane organization and biogenesis;0.000408381396000027!GO:0035257;nuclear hormone receptor binding;0.000419380733997304!GO:0006310;DNA recombination;0.000432469229711133!GO:0030118;clathrin coat;0.000529057340381781!GO:0016853;isomerase activity;0.000529137742653701!GO:0006626;protein targeting to mitochondrion;0.000532220998916741!GO:0006405;RNA export from nucleus;0.000539834275716084!GO:0031072;heat shock protein binding;0.00056143842332425!GO:0000792;heterochromatin;0.000573503039465452!GO:0004298;threonine endopeptidase activity;0.000573503039465452!GO:0005525;GTP binding;0.000573503039465452!GO:0007052;mitotic spindle organization and biogenesis;0.000592060958064396!GO:0044440;endosomal part;0.000659093556936879!GO:0010008;endosome membrane;0.000659093556936879!GO:0008250;oligosaccharyl transferase complex;0.000664727104032487!GO:0004576;oligosaccharyl transferase activity;0.000692170701788752!GO:0032508;DNA duplex unwinding;0.000698197010079001!GO:0032392;DNA geometric change;0.000698197010079001!GO:0046474;glycerophospholipid biosynthetic process;0.000768104340787762!GO:0015992;proton transport;0.000775783509355398!GO:0005798;Golgi-associated vesicle;0.00078942654718546!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000790831525771351!GO:0016563;transcription activator activity;0.000838952145437173!GO:0032940;secretion by cell;0.000840687816852733!GO:0003711;transcription elongation regulator activity;0.000843695444772846!GO:0006818;hydrogen transport;0.000843695444772846!GO:0046489;phosphoinositide biosynthetic process;0.000889504544881404!GO:0045454;cell redox homeostasis;0.000891702618929334!GO:0031124;mRNA 3'-end processing;0.000904820492107994!GO:0006378;mRNA polyadenylation;0.000950872749131781!GO:0005637;nuclear inner membrane;0.000979151013078171!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010220492033679!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010220492033679!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010220492033679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00104234713535011!GO:0006268;DNA unwinding during replication;0.00104571589385045!GO:0006839;mitochondrial transport;0.0011575219907128!GO:0046914;transition metal ion binding;0.0012272771909443!GO:0005905;coated pit;0.00125436054300749!GO:0030880;RNA polymerase complex;0.00127642222181069!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0012822465404499!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00130647978618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00130647978618!GO:0007018;microtubule-based movement;0.00138074556928707!GO:0005793;ER-Golgi intermediate compartment;0.00138446982544588!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00140735626347324!GO:0015399;primary active transmembrane transporter activity;0.00140735626347324!GO:0032259;methylation;0.00154721863325508!GO:0008022;protein C-terminus binding;0.00154793229584897!GO:0003746;translation elongation factor activity;0.00154793229584897!GO:0046467;membrane lipid biosynthetic process;0.00161219661391517!GO:0016859;cis-trans isomerase activity;0.00164040823803059!GO:0043596;nuclear replication fork;0.00171712078384722!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017774266950558!GO:0042393;histone binding;0.001781303801742!GO:0000082;G1/S transition of mitotic cell cycle;0.00184495286538428!GO:0030135;coated vesicle;0.00187440158472052!GO:0008276;protein methyltransferase activity;0.00191657703142581!GO:0004003;ATP-dependent DNA helicase activity;0.00191978639684357!GO:0051920;peroxiredoxin activity;0.00192228721803158!GO:0040029;regulation of gene expression, epigenetic;0.00193754499315882!GO:0044454;nuclear chromosome part;0.00195257038510727!GO:0000819;sister chromatid segregation;0.00204446180226572!GO:0004527;exonuclease activity;0.00206546243541628!GO:0051539;4 iron, 4 sulfur cluster binding;0.0022008638560816!GO:0009056;catabolic process;0.0022832753613944!GO:0048500;signal recognition particle;0.00233910630500704!GO:0031123;RNA 3'-end processing;0.00243337130202319!GO:0008312;7S RNA binding;0.00259354791371117!GO:0009165;nucleotide biosynthetic process;0.00261593102471434!GO:0000070;mitotic sister chromatid segregation;0.00281702207743584!GO:0006284;base-excision repair;0.00281843909796303!GO:0006611;protein export from nucleus;0.00287275690330449!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00293802785172027!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000428;DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000049;tRNA binding;0.00293802785172027!GO:0000086;G2/M transition of mitotic cell cycle;0.00308061044005099!GO:0012501;programmed cell death;0.00325613394842135!GO:0005048;signal sequence binding;0.0032639454990307!GO:0048487;beta-tubulin binding;0.00326741897377079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332105783537226!GO:0003730;mRNA 3'-UTR binding;0.0033564212895643!GO:0008139;nuclear localization sequence binding;0.00342500826580918!GO:0043414;biopolymer methylation;0.00350923190425224!GO:0045892;negative regulation of transcription, DNA-dependent;0.00357454354272814!GO:0051052;regulation of DNA metabolic process;0.00359363337403962!GO:0006915;apoptosis;0.00361209233370785!GO:0006401;RNA catabolic process;0.00376431393889303!GO:0018196;peptidyl-asparagine modification;0.00379857852876576!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00379857852876576!GO:0006595;polyamine metabolic process;0.00379857852876576!GO:0006402;mRNA catabolic process;0.00386657508501779!GO:0032561;guanyl ribonucleotide binding;0.00391088692899831!GO:0019001;guanyl nucleotide binding;0.00391088692899831!GO:0051087;chaperone binding;0.0039196991789234!GO:0006270;DNA replication initiation;0.00397816003797284!GO:0016251;general RNA polymerase II transcription factor activity;0.00411022061834516!GO:0019899;enzyme binding;0.00446872331224052!GO:0000118;histone deacetylase complex;0.00449972381261039!GO:0016126;sterol biosynthetic process;0.00471031819394423!GO:0006891;intra-Golgi vesicle-mediated transport;0.00481277822419711!GO:0043631;RNA polyadenylation;0.00543236805222271!GO:0030867;rough endoplasmic reticulum membrane;0.00570374426955022!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00571166758652886!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00613503003125621!GO:0045047;protein targeting to ER;0.00613503003125621!GO:0006607;NLS-bearing substrate import into nucleus;0.00657607339067561!GO:0000725;recombinational repair;0.00660677272560909!GO:0000724;double-strand break repair via homologous recombination;0.00660677272560909!GO:0000339;RNA cap binding;0.00700753350611951!GO:0005885;Arp2/3 protein complex;0.00701167726138224!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00708602672646673!GO:0005741;mitochondrial outer membrane;0.00708747980281626!GO:0048523;negative regulation of cellular process;0.00718237362644954!GO:0004860;protein kinase inhibitor activity;0.00736638034353426!GO:0000790;nuclear chromatin;0.00737497692139164!GO:0008180;signalosome;0.00770948506138874!GO:0030131;clathrin adaptor complex;0.00778565195133419!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0080899205959029!GO:0030521;androgen receptor signaling pathway;0.00816964264297881!GO:0030119;AP-type membrane coat adaptor complex;0.00850843823700827!GO:0000922;spindle pole;0.0086536697554581!GO:0005769;early endosome;0.00866720916857841!GO:0005832;chaperonin-containing T-complex;0.00867991341155424!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00872184455325963!GO:0051246;regulation of protein metabolic process;0.00925154851746747!GO:0005770;late endosome;0.00925176147894797!GO:0000793;condensed chromosome;0.00972635307612627!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00972635307612627!GO:0015002;heme-copper terminal oxidase activity;0.00972635307612627!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00972635307612627!GO:0004129;cytochrome-c oxidase activity;0.00972635307612627!GO:0005663;DNA replication factor C complex;0.0101436380099114!GO:0008287;protein serine/threonine phosphatase complex;0.0102985039449324!GO:0006505;GPI anchor metabolic process;0.0103474455059132!GO:0019867;outer membrane;0.0104546589933667!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0105870920632978!GO:0000152;nuclear ubiquitin ligase complex;0.0106751603453569!GO:0005669;transcription factor TFIID complex;0.0107851457694788!GO:0031970;organelle envelope lumen;0.0109562457885695!GO:0000178;exosome (RNase complex);0.0112412169033415!GO:0016585;chromatin remodeling complex;0.0114743116650417!GO:0004532;exoribonuclease activity;0.0114880080738502!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0114880080738502!GO:0043492;ATPase activity, coupled to movement of substances;0.0114880080738502!GO:0043601;nuclear replisome;0.0115931214880257!GO:0030894;replisome;0.0115931214880257!GO:0051540;metal cluster binding;0.01219176064245!GO:0051536;iron-sulfur cluster binding;0.01219176064245!GO:0031968;organelle outer membrane;0.0126226330700363!GO:0016584;nucleosome positioning;0.0126242848851376!GO:0005758;mitochondrial intermembrane space;0.012795961024314!GO:0000910;cytokinesis;0.0128449370747029!GO:0016272;prefoldin complex;0.0128449370747029!GO:0015980;energy derivation by oxidation of organic compounds;0.013082171440974!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0131736751182423!GO:0016787;hydrolase activity;0.0131771019645246!GO:0006650;glycerophospholipid metabolic process;0.0132767929138499!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0133716411547285!GO:0042770;DNA damage response, signal transduction;0.013379744406161!GO:0006144;purine base metabolic process;0.013379744406161!GO:0022890;inorganic cation transmembrane transporter activity;0.0134542773141949!GO:0019783;small conjugating protein-specific protease activity;0.0135433704193959!GO:0030027;lamellipodium;0.013647992863808!GO:0030384;phosphoinositide metabolic process;0.0136523697623123!GO:0031252;leading edge;0.0136665732681113!GO:0006506;GPI anchor biosynthetic process;0.013751911955119!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0138519252880877!GO:0008219;cell death;0.0139173195570962!GO:0016265;death;0.0139173195570962!GO:0005869;dynactin complex;0.014202085385943!GO:0019887;protein kinase regulator activity;0.0143712975470631!GO:0005652;nuclear lamina;0.0147680862516679!GO:0031577;spindle checkpoint;0.0150445963921332!GO:0005680;anaphase-promoting complex;0.0150576529850631!GO:0030496;midbody;0.0150576529850631!GO:0030663;COPI coated vesicle membrane;0.0150576529850631!GO:0030126;COPI vesicle coat;0.0150576529850631!GO:0044430;cytoskeletal part;0.015115527669805!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0154644412179362!GO:0008092;cytoskeletal protein binding;0.0154971699883395!GO:0004843;ubiquitin-specific protease activity;0.0160527446210895!GO:0007264;small GTPase mediated signal transduction;0.0162408215389037!GO:0044450;microtubule organizing center part;0.0164652046697544!GO:0022406;membrane docking;0.0166458167579672!GO:0048278;vesicle docking;0.0166458167579672!GO:0009112;nucleobase metabolic process;0.0166715176590202!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0170985925596606!GO:0035267;NuA4 histone acetyltransferase complex;0.0173830837979829!GO:0008213;protein amino acid alkylation;0.0176249949619016!GO:0006479;protein amino acid methylation;0.0176249949619016!GO:0030137;COPI-coated vesicle;0.0176484469735074!GO:0030132;clathrin coat of coated pit;0.0180790011033976!GO:0030705;cytoskeleton-dependent intracellular transport;0.0182388764866321!GO:0005521;lamin binding;0.0187578521751963!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055083;monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055064;chloride ion homeostasis;0.0187769780334114!GO:0030644;cellular chloride ion homeostasis;0.0187769780334114!GO:0006376;mRNA splice site selection;0.0190580081718032!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190580081718032!GO:0008408;3'-5' exonuclease activity;0.0197859871055022!GO:0031570;DNA integrity checkpoint;0.0198242384243228!GO:0046966;thyroid hormone receptor binding;0.0198864591298295!GO:0004523;ribonuclease H activity;0.0199726185599418!GO:0000287;magnesium ion binding;0.0200561635712437!GO:0006695;cholesterol biosynthetic process;0.0206117796250109!GO:0000123;histone acetyltransferase complex;0.0209451766229761!GO:0043130;ubiquitin binding;0.0210089806628439!GO:0032182;small conjugating protein binding;0.0210089806628439!GO:0016311;dephosphorylation;0.0215087805883966!GO:0045936;negative regulation of phosphate metabolic process;0.021687514127808!GO:0004221;ubiquitin thiolesterase activity;0.0218150550253516!GO:0005881;cytoplasmic microtubule;0.0219274546582598!GO:0019843;rRNA binding;0.0219576828391439!GO:0005788;endoplasmic reticulum lumen;0.022440527329276!GO:0007021;tubulin folding;0.0224878822716043!GO:0004518;nuclease activity;0.0227408055775492!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0228540984983652!GO:0043624;cellular protein complex disassembly;0.0232249866948578!GO:0045815;positive regulation of gene expression, epigenetic;0.0237905366625309!GO:0016569;covalent chromatin modification;0.0240973826778027!GO:0032200;telomere organization and biogenesis;0.0240973826778027!GO:0000723;telomere maintenance;0.0240973826778027!GO:0030658;transport vesicle membrane;0.0247508372205747!GO:0009116;nucleoside metabolic process;0.0247776250273443!GO:0008536;Ran GTPase binding;0.0247954404013701!GO:0030176;integral to endoplasmic reticulum membrane;0.0251646906240977!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0253519629139877!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025561649123005!GO:0006406;mRNA export from nucleus;0.0259156917722856!GO:0006220;pyrimidine nucleotide metabolic process;0.0262129635424374!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0263407419276622!GO:0006904;vesicle docking during exocytosis;0.0263407419276622!GO:0009303;rRNA transcription;0.0266551079916801!GO:0043022;ribosome binding;0.026842192162081!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270636806508931!GO:0050178;phenylpyruvate tautomerase activity;0.0272878593115142!GO:0043433;negative regulation of transcription factor activity;0.0280284471009867!GO:0007004;telomere maintenance via telomerase;0.0281787562932584!GO:0006730;one-carbon compound metabolic process;0.0281930459569696!GO:0004721;phosphoprotein phosphatase activity;0.0287157776272515!GO:0030133;transport vesicle;0.0287772780290173!GO:0051287;NAD binding;0.0287772780290173!GO:0042026;protein refolding;0.0288545483307469!GO:0042054;histone methyltransferase activity;0.0288593281319412!GO:0006497;protein amino acid lipidation;0.0290878777372387!GO:0003923;GPI-anchor transamidase activity;0.0305284455322597!GO:0016255;attachment of GPI anchor to protein;0.0305284455322597!GO:0042765;GPI-anchor transamidase complex;0.0305284455322597!GO:0016790;thiolester hydrolase activity;0.0310647783929697!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0317499175209517!GO:0045039;protein import into mitochondrial inner membrane;0.0317499175209517!GO:0035258;steroid hormone receptor binding;0.0318364555615847!GO:0005720;nuclear heterochromatin;0.0318703291829516!GO:0032984;macromolecular complex disassembly;0.0321008574760944!GO:0016579;protein deubiquitination;0.0321008574760944!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0325458208952463!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0327341771879867!GO:0033170;DNA-protein loading ATPase activity;0.0327584490812197!GO:0003689;DNA clamp loader activity;0.0327584490812197!GO:0043284;biopolymer biosynthetic process;0.0328690594202874!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0330475925659432!GO:0030125;clathrin vesicle coat;0.0330475925659432!GO:0030665;clathrin coated vesicle membrane;0.0330475925659432!GO:0019210;kinase inhibitor activity;0.0331256112073865!GO:0005784;translocon complex;0.0335265001241118!GO:0009304;tRNA transcription;0.033573049962679!GO:0019207;kinase regulator activity;0.0336360125879759!GO:0005487;nucleocytoplasmic transporter activity;0.0337051095739264!GO:0019206;nucleoside kinase activity;0.0337051095739264!GO:0042791;5S class rRNA transcription;0.0337051095739264!GO:0000127;transcription factor TFIIIC complex;0.0337051095739264!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0337051095739264!GO:0042802;identical protein binding;0.033930902379881!GO:0045664;regulation of neuron differentiation;0.0347037509844179!GO:0033116;ER-Golgi intermediate compartment membrane;0.0348069493966566!GO:0006541;glutamine metabolic process;0.0355604344708604!GO:0032039;integrator complex;0.0357213653861586!GO:0042769;DNA damage response, detection of DNA damage;0.0360169464466559!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0360887798157018!GO:0000726;non-recombinational repair;0.0363217125658755!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0369715001470008!GO:0008088;axon cargo transport;0.0377585823851156!GO:0043241;protein complex disassembly;0.0379621383140311!GO:0006289;nucleotide-excision repair;0.0379634108942815!GO:0008143;poly(A) binding;0.0389191711545876!GO:0046112;nucleobase biosynthetic process;0.0408497454713907!GO:0005850;eukaryotic translation initiation factor 2 complex;0.041027260841404!GO:0042809;vitamin D receptor binding;0.0413247992579161!GO:0031371;ubiquitin conjugating enzyme complex;0.0415663453578565!GO:0008637;apoptotic mitochondrial changes;0.041660965239964!GO:0005732;small nucleolar ribonucleoprotein complex;0.0416814086717038!GO:0008538;proteasome activator activity;0.0430616033813997!GO:0043154;negative regulation of caspase activity;0.0437717873660049!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0438898508044277!GO:0009451;RNA modification;0.0439127599588858!GO:0051252;regulation of RNA metabolic process;0.0458918084962876!GO:0008601;protein phosphatase type 2A regulator activity;0.0464830163811562!GO:0008629;induction of apoptosis by intracellular signals;0.0464830163811562!GO:0000209;protein polyubiquitination;0.0465247674431006!GO:0006354;RNA elongation;0.0467220515717477!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0467220515717477!GO:0016417;S-acyltransferase activity;0.0468349500013667!GO:0051128;regulation of cellular component organization and biogenesis;0.0468349500013667!GO:0000303;response to superoxide;0.0471696075272035!GO:0030660;Golgi-associated vesicle membrane;0.0471696075272035!GO:0051789;response to protein stimulus;0.0476732214317288!GO:0006986;response to unfolded protein;0.0476732214317288!GO:0016279;protein-lysine N-methyltransferase activity;0.0482055807754664!GO:0018024;histone-lysine N-methyltransferase activity;0.0482055807754664!GO:0016278;lysine N-methyltransferase activity;0.0482055807754664!GO:0032594;protein transport within lipid bilayer;0.0483875427733068!GO:0032907;transforming growth factor-beta3 production;0.0483875427733068!GO:0032596;protein transport into lipid raft;0.0483875427733068!GO:0032910;regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0032595;B cell receptor transport within lipid bilayer;0.0483875427733068!GO:0033606;chemokine receptor transport within lipid bilayer;0.0483875427733068!GO:0032600;chemokine receptor transport out of lipid raft;0.0483875427733068!GO:0032599;protein transport out of lipid raft;0.0483875427733068!GO:0032597;B cell receptor transport into lipid raft;0.0483875427733068!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0042326;negative regulation of phosphorylation;0.0484092124556708!GO:0008652;amino acid biosynthetic process;0.0484092124556708!GO:0006916;anti-apoptosis;0.0485181063336009!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0485339075694788!GO:0003756;protein disulfide isomerase activity;0.0486466580931295!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0486466580931295
|sample_id=10844
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=POU6F1:3.76335713863;SOX{8,9,10}:3.28270620467;BREu{core}:3.16089337843;NKX2-3_NKX2-5:2.94445761357;NANOG:2.74576526173;TFDP1:2.54169461394;ADNP_IRX_SIX_ZHX:2.33685006144;NFY{A,B,C}:2.33400603659;MYOD1:2.30387308024;LMO2:2.06358489504;E2F1..5:2.04693724697;POU1F1:2.0210053614;LHX3,4:1.98547098942;NRF1:1.73809527491;ZNF143:1.73596491698;SOX17:1.70814019014;YY1:1.69736502642;HBP1_HMGB_SSRP1_UBTF:1.68669799058;PBX1:1.66373024443;AHR_ARNT_ARNT2:1.53463347837;ELK1,4_GABP{A,B1}:1.50388786447;ZEB1:1.47726958336;SNAI1..3:1.46637822582;VSX1,2:1.46036152042;NKX6-1,2:1.4074336104;SOX2:1.39984098484;HOX{A4,D4}:1.38773464672;PRRX1,2:1.33395051326;FOXQ1:1.32842975264;PAX3,7:1.32172242271;POU2F1..3:1.29543277648;GFI1:1.22601697;ONECUT1,2:1.155705998;PITX1..3:1.15046963274;PAX6:1.12287124138;FOXD3:1.12095320513;MED-1{core}:1.08483390917;POU5F1:1.06381108362;RFX2..5_RFXANK_RFXAP:1.06073294778;PATZ1:1.01081739354;RBPJ:0.993239946549;LEF1_TCF7_TCF7L1,2:0.991130375198;ATF4:0.984633930901;ARID5B:0.971233932648;PDX1:0.924892947364;FOXM1:0.922293034195;RFX1:0.917446742923;XCPE1{core}:0.900164070916;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.871913815168;ZFP161:0.860357039553;DBP:0.834046323377;JUN:0.831422854557;RREB1:0.808717560287;MTE{core}:0.793689043321;SOX5:0.790757150085;NHLH1,2:0.769850913452;FOXP1:0.73181288662;HOX{A6,A7,B6,B7}:0.698832605053;TFAP2B:0.693867139119;STAT1,3:0.692562139981;TGIF1:0.690688091475;MZF1:0.684956061088;IKZF2:0.64015087665;FOXL1:0.629147538333;EVI1:0.597133445344;CUX2:0.597030618851;HOXA9_MEIS1:0.595000798987;PAX8:0.589941051834;FOXA2:0.509869439405;NKX3-1:0.473862114029;PAX5:0.446801620731;HIC1:0.428996186595;REST:0.412062535609;TEF:0.392827285678;RORA:0.383965840713;ATF5_CREB3:0.379261365733;MTF1:0.377525627546;HSF1,2:0.353241605111;ZNF423:0.353158512685;GFI1B:0.347433566681;NKX2-1,4:0.34384331122;PAX4:0.33656631745;MYB:0.32499754418;NR5A1,2:0.301879133312;ATF2:0.27982581339;BPTF:0.269459334924;bHLH_family:0.26107885526;EGR1..3:0.25963314782;ZNF384:0.258108746005;AR:0.249453143754;FOX{F1,F2,J1}:0.245574066599;ZBTB6:0.232019251686;AIRE:0.227373780065;GTF2I:0.223571161162;OCT4_SOX2{dimer}:0.202480448789;HAND1,2:0.173517822984;NKX3-2:0.136271356924;STAT5{A,B}:0.102198879268;TAL1_TCF{3,4,12}:0.0837253463259;CDX1,2,4:0.0758125786262;FOX{D1,D2}:0.0473375467014;CDC5L:0.038159537485;MYFfamily:0.0338472237115;ESRRA:-0.0498313712265;ZBTB16:-0.0519778173233;UFEwm:-0.0627864901566;NR6A1:-0.0771168937077;HMX1:-0.0847876422148;PPARG:-0.0925205352855;POU3F1..4:-0.121516746102;EN1,2:-0.155936608555;CRX:-0.163842397654;TP53:-0.175085003174;HNF1A:-0.176649513172;ZIC1..3:-0.190736211435;SP1:-0.198466306544;PRDM1:-0.206122067403;GATA6:-0.207719757882;KLF4:-0.223857021845;CREB1:-0.227150323275;EBF1:-0.229504318285;GATA4:-0.235470997367;FOXP3:-0.23992518268;FOXN1:-0.243628184483;TOPORS:-0.27213676909;MEF2{A,B,C,D}:-0.272714021304;T:-0.285076220767;GTF2A1,2:-0.303776163858;GZF1:-0.362875524963;HES1:-0.371312449178;NFE2L2:-0.395717354835;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.408220941504;TLX1..3_NFIC{dimer}:-0.420671280334;HOX{A5,B5}:-0.430655924235;NR1H4:-0.437699300557;HNF4A_NR2F1,2:-0.450987821978;NKX2-2,8:-0.468073049273;MAZ:-0.47679728488;FOSL2:-0.501994363506;PAX1,9:-0.52680242036;TBX4,5:-0.539301328137;SREBF1,2:-0.542060609318;FOX{I1,J2}:-0.54988563519;ZNF238:-0.568468942848;HMGA1,2:-0.573211955033;PAX2:-0.579265862588;TBP:-0.614167912324;GCM1,2:-0.63691966067;FOS_FOS{B,L1}_JUN{B,D}:-0.657389713549;RUNX1..3:-0.657599513901;SPI1:-0.695143028587;NFIX:-0.696819873532;BACH2:-0.697687995026;NFKB1_REL_RELA:-0.725623162024;ELF1,2,4:-0.756417671659;NFE2:-0.759849578867;DMAP1_NCOR{1,2}_SMARC:-0.770254958328;HLF:-0.796686457449;FOXO1,3,4:-0.817237884215;NFIL3:-0.818322024479;SPIB:-0.83557306755;ALX1:-0.836517808532;EP300:-0.853659383746;SPZ1:-0.868894298385;NFE2L1:-0.938127798005;MAFB:-0.998919054222;TFAP4:-1.01500527906;ALX4:-1.01545101793;XBP1:-1.03520072484;NANOG{mouse}:-1.09918436751;ETS1,2:-1.10256639589;TEAD1:-1.10299363153;MYBL2:-1.12143933382;CEBPA,B_DDIT3:-1.12229709558;NR3C1:-1.13117443043;ATF6:-1.16503853179;SMAD1..7,9:-1.18398027351;IKZF1:-1.19116784248;TLX2:-1.24209222318;HIF1A:-1.26253148936;TFAP2{A,C}:-1.28681099951;IRF7:-1.35100198183;ZNF148:-1.37931753116;IRF1,2:-1.42625429224;GLI1..3:-1.45248654203;RXRA_VDR{dimer}:-1.588698446;ESR1:-1.64425513517;TFCP2:-1.65630408426;NFATC1..3:-1.75251773665;RXR{A,B,G}:-1.78357281927;STAT2,4,6:-1.86079650604;SRF:-1.92640370296
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10844-111E7;search_select_hide=table117:FF:10844-111E7
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:merkel cell carcinoma cell line:MS-1
Species:Human (Homo sapiens)
Library ID:CNhs12839
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexunknown
ageunknown
cell typemerkel cell
cell lineMS-1
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005928
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12839 CAGE DRX007934 DRR008806
Accession ID Hg19

Library idBAMCTSS
CNhs12839 DRZ000231 DRZ001616
Accession ID Hg38

Library idBAMCTSS
CNhs12839 DRZ011581 DRZ012966
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0588
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0732
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.538
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0.599
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0.946
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0934
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.111
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0143
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.749
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.157
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.199
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00427
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0063
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.656
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0.0588
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12839

Jaspar motifP-value
MA0002.21.57561e-6
MA0003.10.208
MA0004.10.507
MA0006.10.201
MA0007.10.298
MA0009.10.211
MA0014.10.984
MA0017.10.00422
MA0018.29.33916e-4
MA0019.10.796
MA0024.14.91116e-7
MA0025.10.201
MA0027.10.511
MA0028.10.131
MA0029.10.655
MA0030.10.26
MA0031.10.912
MA0035.20.435
MA0038.10.0105
MA0039.20.617
MA0040.10.859
MA0041.10.319
MA0042.10.24
MA0043.10.144
MA0046.10.711
MA0047.20.218
MA0048.10.392
MA0050.14.82299e-12
MA0051.12.14574e-5
MA0052.10.179
MA0055.10.909
MA0057.10.163
MA0058.10.482
MA0059.10.58
MA0060.12.04764e-21
MA0061.10.00349
MA0062.20.0444
MA0065.20.00412
MA0066.10.0929
MA0067.10.6
MA0068.10.0612
MA0069.10.0921
MA0070.17.85497e-4
MA0071.10.341
MA0072.10.699
MA0073.10.593
MA0074.10.16
MA0076.10.0126
MA0077.12.25282e-4
MA0078.10.481
MA0079.20.85
MA0080.23.96338e-11
MA0081.10.0388
MA0083.15.09838e-4
MA0084.10.594
MA0087.10.822
MA0088.10.768
MA0090.10.00124
MA0091.10.436
MA0092.10.24
MA0093.10.408
MA0099.23.13198e-14
MA0100.10.264
MA0101.10.0083
MA0102.20.0395
MA0103.10.061
MA0104.20.0897
MA0105.10.00286
MA0106.10.278
MA0107.10.0029
MA0108.20.934
MA0111.10.528
MA0112.21.13425e-4
MA0113.10.00569
MA0114.10.0268
MA0115.10.86
MA0116.10.0139
MA0117.10.953
MA0119.10.188
MA0122.10.428
MA0124.10.556
MA0125.10.0159
MA0131.10.519
MA0135.10.249
MA0136.17.06913e-7
MA0137.20.0242
MA0138.20.311
MA0139.10.324
MA0140.10.0855
MA0141.10.0331
MA0142.10.36
MA0143.10.819
MA0144.10.0119
MA0145.10.0938
MA0146.10.0934
MA0147.10.185
MA0148.10.228
MA0149.10.0115
MA0150.11.90783e-4
MA0152.10.648
MA0153.10.105
MA0154.10.05
MA0155.10.345
MA0156.10.013
MA0157.10.539
MA0159.10.0188
MA0160.10.0464
MA0162.10.215
MA0163.16.39084e-4
MA0164.10.631
MA0258.10.0194
MA0259.10.285



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12839

Novel motifP-value
10.0853
100.125
1000.704
1010.268
1020.583
1030.086
1040.532
1050.54
1060.00178
1070.0433
1080.657
1090.0337
110.0651
1100.382
1110.157
1120.124
1130.708
1140.0162
1150.531
1160.416
1170.197
1180.37
1190.269
120.856
1200.778
1210.655
1220.495
1230.713
1240.448
1250.913
1260.187
1270.198
1280.0144
1290.334
130.197
1300.569
1310.174
1320.811
1330.606
1340.792
1350.07
1360.899
1370.31
1380.212
1390.126
140.662
1400.272
1410.692
1420.276
1430.0142
1440.577
1450.117
1460.966
1470.788
1480.0545
1490.0184
150.167
1500.626
1510.333
1520.0166
1530.206
1540.797
1550.913
1560.984
1570.35
1580.813
1590.834
160.104
1600.379
1610.493
1620.885
1630.238
1640.123
1650.0855
1660.622
1670.352
1680.0499
1690.00953
170.21
180.227
190.0506
20.412
200.906
210.0928
220.0882
230.00635
240.293
250.868
260.244
270.489
280.888
290.452
30.0308
300.747
310.375
320.00255
330.412
340.408
350.641
360.652
370.0472
380.44
390.244
40.717
400.48
410.331
420.257
430.106
440.332
450.382
460.238
470.363
480.269
490.194
50.0978
500.216
510.4
520.156
530.448
540.173
550.0194
560.559
570.548
580.345
590.0663
60.439
600.013
610.366
620.114
630.0812
640.753
650.173
660.466
670.934
680.819
690.873
70.391
700.0286
710.075
720.25
730.0134
740.247
750.0808
760.577
770.109
780.263
790.0522
80.167
800.064
810.256
820.0853
830.547
840.552
850.00701
860.291
870.429
880.873
890.0679
90.339
900.0717
910.126
920.0444
930.918
940.0924
950.131
960.162
970.87
980.222
990.646



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12839


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

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