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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005518
|DRA_sample_Accession=CAGE@SAMD00005518
|accession_numbers=CAGE;DRX007946;DRR008818;DRZ000243;DRZ001628
|accession_numbers=CAGE;DRX007946;DRR008818;DRZ000243;DRZ001628;DRZ011593;DRZ012978
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
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|library_id=CNhs13063
|library_id=CNhs13063
|library_id_phase_based=2:CNhs13063
|library_id_phase_based=2:CNhs13063
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10847
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10847
|name=mesothelioma cell line:NCI-H2052
|name=mesothelioma cell line:NCI-H2052
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 96: Line 100:
|top_motifs=TFDP1:1.44486769724;PDX1:1.4385495834;HSF1,2:1.39778702021;ARID5B:1.37963097719;NKX3-1:1.33402138999;AIRE:1.08150190429;ADNP_IRX_SIX_ZHX:1.04688977828;NFE2L1:1.03203528966;TP53:1.00758336219;FOX{I1,J2}:0.959635149258;POU1F1:0.940296938632;E2F1..5:0.932474812081;HOXA9_MEIS1:0.911455793957;bHLH_family:0.894145235776;XCPE1{core}:0.860909477493;TEAD1:0.817972161919;HES1:0.815348829854;HOX{A4,D4}:0.763520981313;PAX5:0.761649335847;EN1,2:0.735355891352;ZBTB16:0.717428121985;GZF1:0.686557153779;FOXQ1:0.684823346718;GFI1:0.643260896806;NKX3-2:0.609570670525;ZNF143:0.594684442409;UFEwm:0.536014111829;POU5F1:0.534255279927;HOX{A5,B5}:0.524653234212;TEF:0.505860980999;ZBTB6:0.505225486431;GCM1,2:0.497188187619;PAX6:0.490149149465;EVI1:0.4847449107;HBP1_HMGB_SSRP1_UBTF:0.463724630683;GATA4:0.458824537335;NFY{A,B,C}:0.458422032751;GFI1B:0.454303758438;EP300:0.45232341736;FOXL1:0.417660943989;HLF:0.400257056358;RXRA_VDR{dimer}:0.377149081428;OCT4_SOX2{dimer}:0.364169611273;BREu{core}:0.350150807105;TFAP2B:0.345229847431;SP1:0.342229903093;HIC1:0.306848744969;POU3F1..4:0.294844864804;MYB:0.286161847113;BACH2:0.286104103168;HOX{A6,A7,B6,B7}:0.256627122463;SPZ1:0.253067453996;ONECUT1,2:0.249451674974;NFIX:0.248345396184;MZF1:0.242873322117;FOXM1:0.222867512406;NFE2:0.215212821891;FOS_FOS{B,L1}_JUN{B,D}:0.190462312363;ZIC1..3:0.179212123649;STAT5{A,B}:0.172471282074;SRF:0.151820901648;NR3C1:0.142829089775;EGR1..3:0.135975610105;KLF4:0.134635733026;NRF1:0.125635666033;PRRX1,2:0.116445424101;FOSL2:0.109967633431;CDX1,2,4:0.105750137073;STAT2,4,6:0.0982789851432;ELK1,4_GABP{A,B1}:0.0837227768712;LHX3,4:0.0735543821551;CDC5L:0.0471448133692;TLX1..3_NFIC{dimer}:0.0470718877775;RXR{A,B,G}:0.0438948677022;PRDM1:0.0399761206336;ZNF384:0.0398899607252;ZFP161:0.0193566259983;MAFB:0.0080453002126;LEF1_TCF7_TCF7L1,2:0.00770367630673;MTF1:-0.00345527929072;GTF2A1,2:-0.0096497736066;FOXD3:-0.0115325672034;SOX{8,9,10}:-0.0177177120925;DMAP1_NCOR{1,2}_SMARC:-0.0247710529092;MTE{core}:-0.036273275198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0443148307693;IKZF2:-0.045439146957;NR6A1:-0.0495670701542;GTF2I:-0.0540012217186;MAZ:-0.0574556646518;LMO2:-0.0742059092692;FOXO1,3,4:-0.0827548755488;MYBL2:-0.108967872307;CEBPA,B_DDIT3:-0.109389847828;NKX2-1,4:-0.117473838884;PAX4:-0.120640304364;TBP:-0.122262930143;HMX1:-0.130386209847;HNF1A:-0.137205507108;AHR_ARNT_ARNT2:-0.139442975632;ESRRA:-0.14508446858;SNAI1..3:-0.161990231826;PPARG:-0.167629694765;ZNF148:-0.16956464707;NKX2-2,8:-0.177859794773;HMGA1,2:-0.186156030316;HNF4A_NR2F1,2:-0.191462327107;PITX1..3:-0.1917083608;RBPJ:-0.221945158345;MED-1{core}:-0.23002804459;TOPORS:-0.254047098192;FOXA2:-0.264405359184;CUX2:-0.268527443054;EBF1:-0.270732613335;IRF1,2:-0.27095566121;NFE2L2:-0.283029620496;SOX17:-0.284294926398;PAX1,9:-0.298254818929;AR:-0.298351854258;ALX1:-0.301702136832;MYOD1:-0.316224599806;ESR1:-0.31875752897;PATZ1:-0.326940542072;TFAP4:-0.338978538677;ETS1,2:-0.351333365067;SPIB:-0.35161804774;NFATC1..3:-0.36396301368;IRF7:-0.366011882333;RREB1:-0.367161252034;YY1:-0.374488714262;POU2F1..3:-0.376415344182;NFKB1_REL_RELA:-0.377757917508;ELF1,2,4:-0.384052878323;GATA6:-0.386418847927;FOXP1:-0.395536383417;PAX3,7:-0.39910147962;XBP1:-0.403012041519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.432603626229;HIF1A:-0.434096264403;TFCP2:-0.436200296939;RFX1:-0.43774745483;RUNX1..3:-0.440267688168;PBX1:-0.45762997921;JUN:-0.463757292397;TAL1_TCF{3,4,12}:-0.464704990996;SMAD1..7,9:-0.477083446808;NHLH1,2:-0.485051043712;T:-0.490623778389;REST:-0.512262622864;IKZF1:-0.516745853241;NFIL3:-0.551100108705;MYFfamily:-0.554545546592;TBX4,5:-0.555598811228;MEF2{A,B,C,D}:-0.557136187797;ZEB1:-0.558050013082;ATF6:-0.571968711614;SPI1:-0.580903263158;ATF5_CREB3:-0.610685519137;POU6F1:-0.622148889641;ALX4:-0.624605419632;ZNF423:-0.642478248235;TFAP2{A,C}:-0.662066110439;NKX6-1,2:-0.665671910682;STAT1,3:-0.684338494165;NR1H4:-0.686160569883;SOX2:-0.693815263425;PAX8:-0.716790168064;TGIF1:-0.725857434217;NR5A1,2:-0.730134184036;NANOG:-0.795087095433;VSX1,2:-0.799945876108;RFX2..5_RFXANK_RFXAP:-0.815881018388;FOX{D1,D2}:-0.819902084737;GLI1..3:-0.832770558198;FOX{F1,F2,J1}:-0.840220584707;CREB1:-0.856649961255;NKX2-3_NKX2-5:-0.864186974329;DBP:-0.872560656038;ATF4:-0.890090852687;FOXN1:-0.905937305792;SREBF1,2:-0.915667481986;ZNF238:-0.95605716299;PAX2:-0.956086665857;SOX5:-0.982861951911;FOXP3:-0.984467286471;ATF2:-1.03506172092;HAND1,2:-1.04939390214;CRX:-1.11626567004;BPTF:-1.30238790445;RORA:-1.50136896424;TLX2:-2.05107233745;NANOG{mouse}:-2.26567323441
|top_motifs=TFDP1:1.44486769724;PDX1:1.4385495834;HSF1,2:1.39778702021;ARID5B:1.37963097719;NKX3-1:1.33402138999;AIRE:1.08150190429;ADNP_IRX_SIX_ZHX:1.04688977828;NFE2L1:1.03203528966;TP53:1.00758336219;FOX{I1,J2}:0.959635149258;POU1F1:0.940296938632;E2F1..5:0.932474812081;HOXA9_MEIS1:0.911455793957;bHLH_family:0.894145235776;XCPE1{core}:0.860909477493;TEAD1:0.817972161919;HES1:0.815348829854;HOX{A4,D4}:0.763520981313;PAX5:0.761649335847;EN1,2:0.735355891352;ZBTB16:0.717428121985;GZF1:0.686557153779;FOXQ1:0.684823346718;GFI1:0.643260896806;NKX3-2:0.609570670525;ZNF143:0.594684442409;UFEwm:0.536014111829;POU5F1:0.534255279927;HOX{A5,B5}:0.524653234212;TEF:0.505860980999;ZBTB6:0.505225486431;GCM1,2:0.497188187619;PAX6:0.490149149465;EVI1:0.4847449107;HBP1_HMGB_SSRP1_UBTF:0.463724630683;GATA4:0.458824537335;NFY{A,B,C}:0.458422032751;GFI1B:0.454303758438;EP300:0.45232341736;FOXL1:0.417660943989;HLF:0.400257056358;RXRA_VDR{dimer}:0.377149081428;OCT4_SOX2{dimer}:0.364169611273;BREu{core}:0.350150807105;TFAP2B:0.345229847431;SP1:0.342229903093;HIC1:0.306848744969;POU3F1..4:0.294844864804;MYB:0.286161847113;BACH2:0.286104103168;HOX{A6,A7,B6,B7}:0.256627122463;SPZ1:0.253067453996;ONECUT1,2:0.249451674974;NFIX:0.248345396184;MZF1:0.242873322117;FOXM1:0.222867512406;NFE2:0.215212821891;FOS_FOS{B,L1}_JUN{B,D}:0.190462312363;ZIC1..3:0.179212123649;STAT5{A,B}:0.172471282074;SRF:0.151820901648;NR3C1:0.142829089775;EGR1..3:0.135975610105;KLF4:0.134635733026;NRF1:0.125635666033;PRRX1,2:0.116445424101;FOSL2:0.109967633431;CDX1,2,4:0.105750137073;STAT2,4,6:0.0982789851432;ELK1,4_GABP{A,B1}:0.0837227768712;LHX3,4:0.0735543821551;CDC5L:0.0471448133692;TLX1..3_NFIC{dimer}:0.0470718877775;RXR{A,B,G}:0.0438948677022;PRDM1:0.0399761206336;ZNF384:0.0398899607252;ZFP161:0.0193566259983;MAFB:0.0080453002126;LEF1_TCF7_TCF7L1,2:0.00770367630673;MTF1:-0.00345527929072;GTF2A1,2:-0.0096497736066;FOXD3:-0.0115325672034;SOX{8,9,10}:-0.0177177120925;DMAP1_NCOR{1,2}_SMARC:-0.0247710529092;MTE{core}:-0.036273275198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0443148307693;IKZF2:-0.045439146957;NR6A1:-0.0495670701542;GTF2I:-0.0540012217186;MAZ:-0.0574556646518;LMO2:-0.0742059092692;FOXO1,3,4:-0.0827548755488;MYBL2:-0.108967872307;CEBPA,B_DDIT3:-0.109389847828;NKX2-1,4:-0.117473838884;PAX4:-0.120640304364;TBP:-0.122262930143;HMX1:-0.130386209847;HNF1A:-0.137205507108;AHR_ARNT_ARNT2:-0.139442975632;ESRRA:-0.14508446858;SNAI1..3:-0.161990231826;PPARG:-0.167629694765;ZNF148:-0.16956464707;NKX2-2,8:-0.177859794773;HMGA1,2:-0.186156030316;HNF4A_NR2F1,2:-0.191462327107;PITX1..3:-0.1917083608;RBPJ:-0.221945158345;MED-1{core}:-0.23002804459;TOPORS:-0.254047098192;FOXA2:-0.264405359184;CUX2:-0.268527443054;EBF1:-0.270732613335;IRF1,2:-0.27095566121;NFE2L2:-0.283029620496;SOX17:-0.284294926398;PAX1,9:-0.298254818929;AR:-0.298351854258;ALX1:-0.301702136832;MYOD1:-0.316224599806;ESR1:-0.31875752897;PATZ1:-0.326940542072;TFAP4:-0.338978538677;ETS1,2:-0.351333365067;SPIB:-0.35161804774;NFATC1..3:-0.36396301368;IRF7:-0.366011882333;RREB1:-0.367161252034;YY1:-0.374488714262;POU2F1..3:-0.376415344182;NFKB1_REL_RELA:-0.377757917508;ELF1,2,4:-0.384052878323;GATA6:-0.386418847927;FOXP1:-0.395536383417;PAX3,7:-0.39910147962;XBP1:-0.403012041519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.432603626229;HIF1A:-0.434096264403;TFCP2:-0.436200296939;RFX1:-0.43774745483;RUNX1..3:-0.440267688168;PBX1:-0.45762997921;JUN:-0.463757292397;TAL1_TCF{3,4,12}:-0.464704990996;SMAD1..7,9:-0.477083446808;NHLH1,2:-0.485051043712;T:-0.490623778389;REST:-0.512262622864;IKZF1:-0.516745853241;NFIL3:-0.551100108705;MYFfamily:-0.554545546592;TBX4,5:-0.555598811228;MEF2{A,B,C,D}:-0.557136187797;ZEB1:-0.558050013082;ATF6:-0.571968711614;SPI1:-0.580903263158;ATF5_CREB3:-0.610685519137;POU6F1:-0.622148889641;ALX4:-0.624605419632;ZNF423:-0.642478248235;TFAP2{A,C}:-0.662066110439;NKX6-1,2:-0.665671910682;STAT1,3:-0.684338494165;NR1H4:-0.686160569883;SOX2:-0.693815263425;PAX8:-0.716790168064;TGIF1:-0.725857434217;NR5A1,2:-0.730134184036;NANOG:-0.795087095433;VSX1,2:-0.799945876108;RFX2..5_RFXANK_RFXAP:-0.815881018388;FOX{D1,D2}:-0.819902084737;GLI1..3:-0.832770558198;FOX{F1,F2,J1}:-0.840220584707;CREB1:-0.856649961255;NKX2-3_NKX2-5:-0.864186974329;DBP:-0.872560656038;ATF4:-0.890090852687;FOXN1:-0.905937305792;SREBF1,2:-0.915667481986;ZNF238:-0.95605716299;PAX2:-0.956086665857;SOX5:-0.982861951911;FOXP3:-0.984467286471;ATF2:-1.03506172092;HAND1,2:-1.04939390214;CRX:-1.11626567004;BPTF:-1.30238790445;RORA:-1.50136896424;TLX2:-2.05107233745;NANOG{mouse}:-2.26567323441
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10847-111F1;search_select_hide=table117:FF:10847-111F1
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:NCI-H2052
Species:Human (Homo sapiens)
Library ID:CNhs13063
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age65
cell typemesothelial cell
cell lineNCI-H2052
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005518
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13063 CAGE DRX007946 DRR008818
Accession ID Hg19

Library idBAMCTSS
CNhs13063 DRZ000243 DRZ001628
Accession ID Hg38

Library idBAMCTSS
CNhs13063 DRZ011593 DRZ012978
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0707
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.165
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.16
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.449
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00706
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.185
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0707
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.365
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0752
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13063

Jaspar motifP-value
MA0002.20.031
MA0003.10.226
MA0004.10.786
MA0006.10.403
MA0007.10.647
MA0009.10.783
MA0014.10.582
MA0017.10.0905
MA0018.20.0012
MA0019.10.447
MA0024.12.83484e-4
MA0025.10.233
MA0027.10.355
MA0028.10.545
MA0029.10.25
MA0030.10.133
MA0031.10.027
MA0035.20.47
MA0038.10.663
MA0039.20.0913
MA0040.10.894
MA0041.10.676
MA0042.10.693
MA0043.10.0019
MA0046.10.133
MA0047.20.0631
MA0048.10.0325
MA0050.10.102
MA0051.10.542
MA0052.10.00978
MA0055.10.0245
MA0057.10.308
MA0058.10.963
MA0059.10.455
MA0060.10.00215
MA0061.10.00361
MA0062.20.86
MA0065.20.0333
MA0066.10.271
MA0067.10.00626
MA0068.10.069
MA0069.10.742
MA0070.10.235
MA0071.10.242
MA0072.10.0203
MA0073.10.934
MA0074.10.927
MA0076.10.833
MA0077.10.605
MA0078.10.14
MA0079.20.89
MA0080.28.76078e-8
MA0081.10.0985
MA0083.10.79
MA0084.10.777
MA0087.10.342
MA0088.10.666
MA0090.10.0014
MA0091.10.0332
MA0092.10.631
MA0093.10.643
MA0099.23.23308e-4
MA0100.10.77
MA0101.10.0596
MA0102.20.407
MA0103.10.138
MA0104.20.572
MA0105.18.25568e-5
MA0106.18.68615e-4
MA0107.10.00959
MA0108.20.692
MA0111.10.298
MA0112.20.0152
MA0113.10.0276
MA0114.10.106
MA0115.10.183
MA0116.10.00163
MA0117.10.585
MA0119.10.553
MA0122.10.463
MA0124.10.0867
MA0125.10.211
MA0131.10.581
MA0135.10.617
MA0136.14.77326e-6
MA0137.20.186
MA0138.22.61872e-4
MA0139.10.119
MA0140.10.416
MA0141.10.349
MA0142.10.459
MA0143.10.786
MA0144.10.129
MA0145.10.108
MA0146.10.961
MA0147.10.565
MA0148.10.0571
MA0149.10.12
MA0150.10.721
MA0152.10.841
MA0153.10.221
MA0154.17.93483e-4
MA0155.10.464
MA0156.10.0174
MA0157.10.0721
MA0159.10.596
MA0160.10.191
MA0162.10.975
MA0163.19.77497e-5
MA0164.10.262
MA0258.10.00252
MA0259.10.583



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13063

Novel motifP-value
10.163
100.105
1000.793
1010.175
1020.784
1030.785
1040.396
1050.0422
1060.287
1070.74
1080.999
1090.664
110.222
1100.401
1110.555
1120.0326
1139.84752e-4
1140.162
1150.676
1160.989
1170.012
1180.98
1190.165
120.214
1200.833
1210.496
1220.684
1230.00614
1240.424
1250.516
1260.333
1270.208
1280.121
1290.677
130.533
1300.585
1310.692
1320.278
1330.68
1340.679
1350.313
1360.32
1370.852
1380.92
1392.61306e-4
140.138
1400.831
1410.152
1420.0317
1430.74
1440.857
1450.145
1460.32
1470.475
1480.503
1490.405
150.249
1500.387
1510.544
1520.74
1530.364
1540.76
1550.00755
1560.605
1570.893
1580.0778
1590.424
160.782
1600.423
1610.311
1620.39
1630.0515
1640.897
1650.44
1660.625
1670.25
1680.396
1690.224
170.947
180.694
190.149
20.602
200.866
210.393
220.589
230.214
240.493
250.321
260.29
270.732
280.833
290.722
30.0999
300.724
310.634
320.0153
330.757
340.54
350.0243
360.258
370.323
380.245
390.932
40.232
400.871
410.349
420.23
430.0352
440.894
450.38
460.357
470.308
480.624
490.0313
50.018
500.899
510.604
520.705
530.486
540.612
550.529
560.599
570.991
580.0784
590.12
60.52
600.0417
610.644
620.0477
630.318
640.487
650.243
660.0952
670.713
680.714
690.179
70.0937
700.0214
710.364
720.19
730.999
740.977
750.156
760.999
770.617
780.467
790.62
80.972
800.043
810.721
820.0118
830.93
840.194
850.00505
860.0675
870.234
880.189
890.167
90.377
900.249
910.137
920.0478
930.453
940.385
950.827
960.196
970.548
980.308
990.0703



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13063


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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