FF:10853-111F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005138 | |||
|accession_numbers=CAGE;DRX007942;DRR008814;DRZ000239;DRZ001624;DRZ011589;DRZ012974 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10853-111F7 | |id=FF:10853-111F7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13069 | |||
|library_id_phase_based=2:CNhs13069 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10853 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10853 | |||
|name=mesothelioma cell line:Mero-82 | |name=mesothelioma cell line:Mero-82 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13069,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13069,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.0475387480560691,0,0,0.186754947878481,0,-0.0473987034063375,0.301332726050915,0,0,0,0,0,0,0,0,0,0,0,0.239101714601507,0,0.0857787042530795,0,0,0,0,0,0.614735903924509,0,0,0.300518324709991,0,0,0,0,0,0,0,0,0,0,0.86706390252645,0,-0.0353025533040683,0.173032754330496,0,0,0,0,0,0,0,0.0233237269432348,0,0,0,0,0,0,0,0.0760403930878907,0,0,0.0756891271173989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0358651525067834,0,0,0,0,0,0,0,0,0,0,0.0878598599075455,-0.0149878544422302,0.086516377165248,0,0.0475387480560691,0.0950774961121382,-0.0980353512377064,0.227931121020957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.0950774961121382,0,0,-0.0229640227835377,-0.0843518149857576,0,0,0.173032754330496,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.0950774961121382,0,0.0950774961121382,0,0,0,0,0,0,0,0.0492552479010002,0.0292724412784469,-0.301053464421513,-0.0484376464113337,0.0475387480560691,0,-0.0880093029039067,0.0950774961121382,0,0,0.072149846805183,0,0,0,0,0,0.0449128873779311,0,-0.0504125515893149,0,0.0950774961121382,0,0,-0.0186252810838506,0.0416007470664598,0,0.136411996255105,0.02673323503477,0,0.00860660033151195,0,0,0.113467668754991,0,-0.0258019876816025,0.213713954863147,0,-0.383120009958825,0.00487586164013293,0,0,0,-0.438579060458655,-0.110035227781643,0,0,-0.121779851751874,-0.0472944933393419,0,0,-0.391044581551635,0,-0.079927720076051,-0.0402112468921001,0,0.3545848614668,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.342425972195085,0.161477158348776,0.173032754330496,0.433474914488853,0,-0.0258580013956482,0,0,-0.278208659844429,0.0827389011919947,-0.133206887634127,0.146522794188849,0,-0.302389727009913,-0.0111386302523052,-0.372458160991423,0.144962216061052,-0.147401849371139,-0.189981719549847,0,0.0183715319552535,0.0188343648721468,-0.0384503353552257,0.0325112755769428,-0.0232501952717649,-0.93497438510054,0.0733211755850609,0.0950774961121382,0,0.0950774961121382,0.00532043172816954,0,0.173032754330496,0.077159181894752,0.0589213672318135,-0.237455485212487,-0.154348398417752,0.16450585714974,-0.207044248263627,0.325421990381038,-0.0239615384077413,0.00622926200031055,-0.082302540898036,-0.142393757947416,0,0,-0.046871333802962,0.0664713558460288,0.417173865380862,0,-0.0915583653037036,0.402638291914698,0,-0.0895049127592371,0.0563930554323493,0,0,-0.107794677879346,0,0,0.221491624277668,0,0,0.0473540122118741,-0.0339853293493347,0.114217416409322,0,0.065607503989914,0.00187114908477665,0.113436101418252,0,-0.131250873205559,0.0264984596264656,-0.00164002917472772,-0.16982857260578,0,-0.0440084102082855,-0.400227745761549,-0.0246917985409689,-0.0299757088844604,0.036630669300313,0.391312228935782,-0.1411067553788,0.249185362022232,-0.0561232211465236,0.114794018008094,0.934908692322464,0,0.0624933884951623,-0.679498131621524,0,-0.218575385391863,0.239101714601507,0.0676012428717909,0,0.0273712740673682,0,-0.074859136680712,0.128980817400813,-0.142855251394122,0.135945670160543,0,-0.131895877899489,0,0.119671628974906,0.0462835259375768,0,0,0.0887346312668678,-0.226713413520517,-0.16411167980852,-0.0914507086231255,0,-0.222806262018131,0,0,-0.0234510110580735,0.35967177699594,0.173032754330496,0.0428468499934662,0.142845332648552,-0.00906822643496596,0.0570616808955618,0.433474914488853,0,-0.298627360027858,0.077450860600331,0,0.0401141420170982,-0.0578450170381468,-0.227364227451356,-0.158248845374618,-0.0242762786642734,-0.108622809454255,0,0,-0.177527765965176,0,0.0330381014100672,0,0.0950774961121382,0.209005822399074,0,0,0,0,0,0,0,0,0,0,0,0,0.26313536039185,0.0786415842724054,0,0.122333476380539,0,0.0950774961121382,0,0,0.0950774961121382,0,0,0,0.84678129166242,0.00614700379443855,0.0500153386540756,0.119550857300754,0,0,0,0.321764123140475,0.0358651525067834,0,0.215210271467235,0,0,0,0,0.152960724812296,0,0,0.0475387480560691,0,-0.057730457053664,0.247509184429985,0,0,0,0.455862242041913,0,0,0,0,-0.321957367809488,0,0.0950774961121382,0.391105351411372,0,-0.0569066345550442,-0.0815818795468414,0,-0.212082266356566,-0.136415010062458,0.751256106421003,0,0,-0.261347131789888,0,0.0996714099173625,-0.0231073173960061,0,0,0.0721906848899535,0,0,0,0,0.173032754330496,0,-0.0412817580692598,0.0475387480560691,0,0.0914226715840911,0,0,0.0950774961121382,0,0.0950774961121382,0,0,0,-0.19937968574794,0.146877657942997,0,0,0,0,0,0,0,0.023432724977166,0.0578398089300382,0.0475387480560691,0,0,0,0,0,0,0,0.380957523290109,0,0,0,0,0,0.0760403930878907,0,0,0,0,0.602665452101831,0,0,-0.182284636081376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0497136682950481,-0.0473987034063375,0,0.0950774961121382,0,0,0,0,0,0.117585798301187,0,0,0,0,-0.113884373708977,0.0950774961121382,0,0,0.134305329812351,0,0.186754947878481,0,0,0,0,0,0,0.0475387480560691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414035286413317,0,-0.0168798921601677,-0.0568589461625992,0,0,0.0649455547471225,0,0,0,0,0,0,0.1853970332159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0950774961121382,0,0,0,0,0,0,0.058182929815839,0,0,0,0,0,0,0,0.614735903924509,0,0,-0.0055164326352782,0,0,0,0,0.173032754330496,0,-0.027923974509028,0.162570569150299,-0.00138494993835214,0,0,0,0.0406919236296832,0,0,0,0,0.172324327182606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0950774961121382,0,0,0,0,0,0,0,0,0,0,0,0,0.0857787042530795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0950774961121382,0.0475387480560691,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.083347893529521,0,0,0,0,0,0,0,0,0.0950774961121382,0,0,0,0,0,0,0,0,0,0,0,0.239101714601507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173032754330496,0,0,0,-0.0583558889855275,0,0,0,0,0,0,0,0,0.86706390252645,0,0,0,0,0.24821204794751,0,-0.0843766322300271,0,0,0,0,0,0,0,0,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=118.2 | |rna_weight_ug=118.2 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100105 | |sample_cell_catalog=9100105 | ||
|sample_cell_line=Mero-82 | |sample_cell_line=Mero-82 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.66671300190548e-282!GO:0043231;intracellular membrane-bound organelle;5.99260441078723e-241!GO:0043227;membrane-bound organelle;8.51524083712059e-241!GO:0043226;organelle;2.1409831933214e-235!GO:0043229;intracellular organelle;8.15851205090051e-235!GO:0005737;cytoplasm;1.20728491997558e-167!GO:0044422;organelle part;1.93164886280292e-142!GO:0044446;intracellular organelle part;4.5846123372783e-141!GO:0005634;nucleus;3.0451849896995e-128!GO:0044237;cellular metabolic process;5.38685515985815e-118!GO:0044238;primary metabolic process;1.37244740107696e-117!GO:0043170;macromolecule metabolic process;3.9416206008082e-117!GO:0044444;cytoplasmic part;5.44307025047994e-114!GO:0032991;macromolecular complex;1.16358531789165e-103!GO:0030529;ribonucleoprotein complex;2.54054093772674e-92!GO:0044428;nuclear part;3.57893256799974e-85!GO:0003723;RNA binding;2.04083419946818e-82!GO:0043233;organelle lumen;5.90952834640241e-80!GO:0031974;membrane-enclosed lumen;5.90952834640241e-80!GO:0043283;biopolymer metabolic process;1.81689916747588e-79!GO:0005515;protein binding;1.46905924606709e-77!GO:0010467;gene expression;9.39724577806647e-76!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.87237666579451e-75!GO:0005739;mitochondrion;5.06940184990895e-64!GO:0006396;RNA processing;1.52633586549035e-56!GO:0006412;translation;2.38114369108672e-56!GO:0003676;nucleic acid binding;8.67241776032163e-55!GO:0005840;ribosome;7.22207714093734e-54!GO:0019538;protein metabolic process;2.33348453845012e-52!GO:0031981;nuclear lumen;2.63700060836787e-52!GO:0043234;protein complex;1.09993604078931e-50!GO:0016043;cellular component organization and biogenesis;2.72769455505407e-50!GO:0044267;cellular protein metabolic process;9.90519634086069e-48!GO:0044260;cellular macromolecule metabolic process;6.20915217202983e-47!GO:0003735;structural constituent of ribosome;2.14280859266004e-46!GO:0016070;RNA metabolic process;2.39967366022207e-43!GO:0033036;macromolecule localization;4.96312862240689e-43!GO:0015031;protein transport;3.209233024345e-42!GO:0016071;mRNA metabolic process;3.40548225207561e-42!GO:0033279;ribosomal subunit;2.71460497191912e-41!GO:0031090;organelle membrane;9.32986047852257e-41!GO:0044429;mitochondrial part;5.4920909737764e-40!GO:0009059;macromolecule biosynthetic process;7.75928514725374e-40!GO:0044249;cellular biosynthetic process;2.05100388223147e-39!GO:0008104;protein localization;4.40576799225116e-39!GO:0008380;RNA splicing;7.2222295251026e-39!GO:0045184;establishment of protein localization;7.50990964099392e-39!GO:0005829;cytosol;4.54424694675031e-38!GO:0031967;organelle envelope;1.71702115948758e-37!GO:0006996;organelle organization and biogenesis;2.00633655382816e-37!GO:0009058;biosynthetic process;2.54830639521894e-37!GO:0031975;envelope;3.88244955469038e-37!GO:0043228;non-membrane-bound organelle;7.27730273332222e-37!GO:0043232;intracellular non-membrane-bound organelle;7.27730273332222e-37!GO:0006397;mRNA processing;7.77787397114368e-36!GO:0046907;intracellular transport;1.01464843289307e-35!GO:0065003;macromolecular complex assembly;1.10529460358779e-35!GO:0006259;DNA metabolic process;8.16402621873233e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.24881481593107e-34!GO:0022607;cellular component assembly;8.7405643729651e-33!GO:0005654;nucleoplasm;3.87145302514812e-31!GO:0006886;intracellular protein transport;1.76450749424206e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.63218466651949e-29!GO:0007049;cell cycle;2.7529511761716e-28!GO:0005681;spliceosome;1.91636710185094e-27!GO:0000166;nucleotide binding;2.58878227944795e-27!GO:0044451;nucleoplasm part;2.19966684285837e-25!GO:0005740;mitochondrial envelope;2.72266574530197e-24!GO:0005730;nucleolus;6.00530551700122e-24!GO:0019866;organelle inner membrane;1.61707087386415e-23!GO:0051649;establishment of cellular localization;3.37502155852e-23!GO:0044445;cytosolic part;3.43100574437391e-23!GO:0016462;pyrophosphatase activity;3.69931683720366e-23!GO:0031966;mitochondrial membrane;4.91622083464568e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.10533523261617e-23!GO:0017111;nucleoside-triphosphatase activity;6.29157260753957e-23!GO:0051641;cellular localization;6.96232283985666e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;7.062902444674e-23!GO:0015934;large ribosomal subunit;2.26820155404337e-22!GO:0005743;mitochondrial inner membrane;1.22557330023596e-21!GO:0016874;ligase activity;1.24033009176422e-21!GO:0022402;cell cycle process;2.07354284591491e-21!GO:0006512;ubiquitin cycle;2.07354284591491e-21!GO:0050794;regulation of cellular process;3.41741494669697e-21!GO:0006119;oxidative phosphorylation;4.30072572526659e-21!GO:0008134;transcription factor binding;5.18784035301049e-21!GO:0015935;small ribosomal subunit;4.68326053456191e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;5.98176774781714e-20!GO:0019941;modification-dependent protein catabolic process;6.68587701082145e-20!GO:0043632;modification-dependent macromolecule catabolic process;6.68587701082145e-20!GO:0006457;protein folding;6.98051701805768e-20!GO:0005694;chromosome;7.53779959023605e-20!GO:0000278;mitotic cell cycle;1.0900109271166e-19!GO:0032553;ribonucleotide binding;1.09798782165046e-19!GO:0032555;purine ribonucleotide binding;1.09798782165046e-19!GO:0044455;mitochondrial membrane part;1.28933264134331e-19!GO:0006511;ubiquitin-dependent protein catabolic process;1.80114992878591e-19!GO:0044257;cellular protein catabolic process;1.86015398374673e-19!GO:0031980;mitochondrial lumen;5.10707065533235e-19!GO:0005759;mitochondrial matrix;5.10707065533235e-19!GO:0044265;cellular macromolecule catabolic process;6.45437517026724e-19!GO:0017076;purine nucleotide binding;1.16165952201771e-18!GO:0006974;response to DNA damage stimulus;1.28081146056736e-18!GO:0044427;chromosomal part;4.00251028906732e-18!GO:0022618;protein-RNA complex assembly;4.97890680226377e-18!GO:0043285;biopolymer catabolic process;5.10774833329439e-18!GO:0000502;proteasome complex (sensu Eukaryota);7.23038101676589e-18!GO:0042254;ribosome biogenesis and assembly;2.38002840649748e-17!GO:0005524;ATP binding;2.98617595515596e-17!GO:0051276;chromosome organization and biogenesis;3.87696024585625e-17!GO:0019222;regulation of metabolic process;5.57311572090833e-17!GO:0032559;adenyl ribonucleotide binding;1.04264098696915e-16!GO:0006605;protein targeting;1.27451331213213e-16!GO:0008135;translation factor activity, nucleic acid binding;2.04842161009908e-16!GO:0048770;pigment granule;2.15147357029007e-16!GO:0042470;melanosome;2.15147357029007e-16!GO:0005761;mitochondrial ribosome;2.92020377806403e-16!GO:0000313;organellar ribosome;2.92020377806403e-16!GO:0012505;endomembrane system;3.18622633263267e-16!GO:0000087;M phase of mitotic cell cycle;3.29820475527396e-16!GO:0007067;mitosis;4.37529628301603e-16!GO:0030163;protein catabolic process;4.870652481116e-16!GO:0009057;macromolecule catabolic process;1.15443288673564e-15!GO:0022403;cell cycle phase;1.26621525941053e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.39267557524272e-15!GO:0006281;DNA repair;1.43051927211845e-15!GO:0005746;mitochondrial respiratory chain;1.73918225785274e-15!GO:0030554;adenyl nucleotide binding;1.7527705847089e-15!GO:0050789;regulation of biological process;2.02623296994838e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.99259919459444e-15!GO:0051301;cell division;7.50356150121087e-15!GO:0051082;unfolded protein binding;1.00117121797825e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.3134624378405e-14!GO:0003954;NADH dehydrogenase activity;1.3134624378405e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3134624378405e-14!GO:0006366;transcription from RNA polymerase II promoter;1.9165015718186e-14!GO:0003712;transcription cofactor activity;2.02131439273682e-14!GO:0005635;nuclear envelope;5.96623208418315e-14!GO:0012501;programmed cell death;7.03599134029016e-14!GO:0044248;cellular catabolic process;7.25929233995748e-14!GO:0043412;biopolymer modification;7.85017551006329e-14!GO:0031323;regulation of cellular metabolic process;8.50379682392973e-14!GO:0005783;endoplasmic reticulum;8.71832696921869e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.44772837124554e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.23093875787947e-13!GO:0006350;transcription;1.48773170920298e-13!GO:0006915;apoptosis;1.66736291763445e-13!GO:0031965;nuclear membrane;1.867572319278e-13!GO:0000279;M phase;1.867572319278e-13!GO:0044453;nuclear membrane part;2.14421030248373e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.84995741540937e-13!GO:0000375;RNA splicing, via transesterification reactions;2.84995741540937e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.84995741540937e-13!GO:0016887;ATPase activity;5.01422040099315e-13!GO:0006260;DNA replication;5.02851208450158e-13!GO:0006323;DNA packaging;5.04986489135776e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.7189941419723e-13!GO:0042773;ATP synthesis coupled electron transport;6.7189941419723e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.87530862640967e-13!GO:0045271;respiratory chain complex I;7.87530862640967e-13!GO:0005747;mitochondrial respiratory chain complex I;7.87530862640967e-13!GO:0051186;cofactor metabolic process;8.23952447541498e-13!GO:0065004;protein-DNA complex assembly;9.15661456809479e-13!GO:0006399;tRNA metabolic process;1.16039586238881e-12!GO:0009719;response to endogenous stimulus;1.1606749878777e-12!GO:0016604;nuclear body;1.17419311824482e-12!GO:0006913;nucleocytoplasmic transport;1.23439573750159e-12!GO:0048193;Golgi vesicle transport;1.36248422279499e-12!GO:0008219;cell death;2.02337013124212e-12!GO:0016265;death;2.02337013124212e-12!GO:0042623;ATPase activity, coupled;2.13294409244954e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.31953656202619e-12!GO:0006464;protein modification process;2.4660002764198e-12!GO:0004386;helicase activity;2.68114890922687e-12!GO:0003743;translation initiation factor activity;3.85865106797831e-12!GO:0051169;nuclear transport;4.38875681428415e-12!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.43692026084106e-12!GO:0008639;small protein conjugating enzyme activity;4.53332263888685e-12!GO:0005643;nuclear pore;5.31176762958057e-12!GO:0005794;Golgi apparatus;7.39664423957591e-12!GO:0010468;regulation of gene expression;7.65989419567882e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.87011819301112e-12!GO:0006364;rRNA processing;7.87011819301112e-12!GO:0044432;endoplasmic reticulum part;7.97759742570658e-12!GO:0004842;ubiquitin-protein ligase activity;1.12064070880857e-11!GO:0016072;rRNA metabolic process;1.40337099110401e-11!GO:0006413;translational initiation;1.98711704209236e-11!GO:0043687;post-translational protein modification;2.33027300579962e-11!GO:0006333;chromatin assembly or disassembly;2.48124406632329e-11!GO:0065002;intracellular protein transport across a membrane;2.57328748644233e-11!GO:0019787;small conjugating protein ligase activity;4.05454980938419e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.87474800220516e-11!GO:0051726;regulation of cell cycle;5.97267798694182e-11!GO:0032774;RNA biosynthetic process;6.931568756614e-11!GO:0000074;regulation of progression through cell cycle;7.77455553624263e-11!GO:0000785;chromatin;8.07799506413314e-11!GO:0006351;transcription, DNA-dependent;8.07799506413314e-11!GO:0050657;nucleic acid transport;1.13638629030155e-10!GO:0051236;establishment of RNA localization;1.13638629030155e-10!GO:0050658;RNA transport;1.13638629030155e-10!GO:0006403;RNA localization;1.19497046276921e-10!GO:0006446;regulation of translational initiation;1.88236961977662e-10!GO:0006732;coenzyme metabolic process;2.86955488126702e-10!GO:0008026;ATP-dependent helicase activity;3.06353628268416e-10!GO:0046930;pore complex;3.15378094903076e-10!GO:0016192;vesicle-mediated transport;3.18763954584621e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.93075249148723e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.93075249148723e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.93075249148723e-10!GO:0045449;regulation of transcription;7.03688824512819e-10!GO:0065007;biological regulation;7.87831630763156e-10!GO:0016607;nuclear speck;1.01241475726337e-09!GO:0003677;DNA binding;1.12369530964263e-09!GO:0006334;nucleosome assembly;1.36214182776902e-09!GO:0017038;protein import;1.44772905339568e-09!GO:0043067;regulation of programmed cell death;1.48901999805487e-09!GO:0016881;acid-amino acid ligase activity;1.5243264893095e-09!GO:0043038;amino acid activation;1.82027599836025e-09!GO:0006418;tRNA aminoacylation for protein translation;1.82027599836025e-09!GO:0043039;tRNA aminoacylation;1.82027599836025e-09!GO:0042981;regulation of apoptosis;2.33754483747591e-09!GO:0008565;protein transporter activity;2.49864869319253e-09!GO:0048523;negative regulation of cellular process;3.76430817234403e-09!GO:0006461;protein complex assembly;3.76669831090534e-09!GO:0009055;electron carrier activity;3.79353878085509e-09!GO:0009259;ribonucleotide metabolic process;3.93852361145349e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.34992903534561e-09!GO:0005793;ER-Golgi intermediate compartment;6.1962178220405e-09!GO:0031497;chromatin assembly;6.62936757065316e-09!GO:0006163;purine nucleotide metabolic process;7.35482545897004e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.92700256963351e-09!GO:0051028;mRNA transport;9.2853553390549e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.17664167474399e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.51245147104534e-08!GO:0007005;mitochondrion organization and biogenesis;1.84090820962313e-08!GO:0016563;transcription activator activity;1.90612607555343e-08!GO:0006355;regulation of transcription, DNA-dependent;2.00015967472835e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.09030087467543e-08!GO:0016564;transcription repressor activity;2.0961603379844e-08!GO:0003697;single-stranded DNA binding;2.13897884306372e-08!GO:0009150;purine ribonucleotide metabolic process;2.17480922302084e-08!GO:0006164;purine nucleotide biosynthetic process;2.30411545591357e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.56261067741578e-08!GO:0005789;endoplasmic reticulum membrane;2.74117326127502e-08!GO:0009260;ribonucleotide biosynthetic process;2.7668263439404e-08!GO:0003714;transcription corepressor activity;3.68670631478381e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.79785505066947e-08!GO:0016779;nucleotidyltransferase activity;6.01839847735522e-08!GO:0015630;microtubule cytoskeleton;6.19860976566061e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.67024335628085e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.10627117739183e-08!GO:0048519;negative regulation of biological process;8.22104120349579e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.636013355558e-08!GO:0005667;transcription factor complex;9.66703245309822e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.92939562790384e-08!GO:0015986;ATP synthesis coupled proton transport;1.189701856671e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.189701856671e-07!GO:0009141;nucleoside triphosphate metabolic process;1.26342044304401e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.2639814856568e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.2639814856568e-07!GO:0051246;regulation of protein metabolic process;1.31082340174372e-07!GO:0043623;cellular protein complex assembly;1.31302188551952e-07!GO:0043566;structure-specific DNA binding;1.31302188551952e-07!GO:0004298;threonine endopeptidase activity;1.32477621558409e-07!GO:0032446;protein modification by small protein conjugation;1.38626461137289e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.66416902676342e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.75327532195925e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.75327532195925e-07!GO:0009056;catabolic process;1.98504832828183e-07!GO:0016567;protein ubiquitination;2.06937054347198e-07!GO:0003924;GTPase activity;2.60622338861773e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.66456565875446e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.66456565875446e-07!GO:0043069;negative regulation of programmed cell death;3.02056045573144e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.96163901055145e-07!GO:0051188;cofactor biosynthetic process;4.40054560324148e-07!GO:0016568;chromatin modification;4.50367487663909e-07!GO:0005819;spindle;5.04220931957611e-07!GO:0019829;cation-transporting ATPase activity;6.8398827045002e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.9297992744571e-07!GO:0030120;vesicle coat;8.09724863593385e-07!GO:0030662;coated vesicle membrane;8.09724863593385e-07!GO:0051170;nuclear import;8.11915377297061e-07!GO:0043066;negative regulation of apoptosis;8.62047800024214e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.02906484926469e-06!GO:0003713;transcription coactivator activity;1.04677881159837e-06!GO:0006916;anti-apoptosis;1.11458370245048e-06!GO:0046034;ATP metabolic process;1.32062901862959e-06!GO:0008270;zinc ion binding;1.41227481201198e-06!GO:0005768;endosome;1.67425558046727e-06!GO:0006754;ATP biosynthetic process;1.67985218823804e-06!GO:0006753;nucleoside phosphate metabolic process;1.67985218823804e-06!GO:0000775;chromosome, pericentric region;1.76839883016426e-06!GO:0006261;DNA-dependent DNA replication;2.10334918775825e-06!GO:0009060;aerobic respiration;2.26180926498539e-06!GO:0006606;protein import into nucleus;2.61916760040712e-06!GO:0000151;ubiquitin ligase complex;2.6727712904448e-06!GO:0009117;nucleotide metabolic process;2.68109340822249e-06!GO:0051427;hormone receptor binding;3.44067196356168e-06!GO:0006752;group transfer coenzyme metabolic process;3.90551387634784e-06!GO:0000245;spliceosome assembly;4.33893412986874e-06!GO:0005762;mitochondrial large ribosomal subunit;4.33893412986874e-06!GO:0000315;organellar large ribosomal subunit;4.33893412986874e-06!GO:0031324;negative regulation of cellular metabolic process;4.3632437823652e-06!GO:0048475;coated membrane;4.57721495114755e-06!GO:0030117;membrane coat;4.57721495114755e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.93397284748171e-06!GO:0045259;proton-transporting ATP synthase complex;4.94822574428801e-06!GO:0006414;translational elongation;6.67377728246545e-06!GO:0045333;cellular respiration;7.21758341658225e-06!GO:0035257;nuclear hormone receptor binding;7.68547667830121e-06!GO:0009108;coenzyme biosynthetic process;8.51753423662761e-06!GO:0003899;DNA-directed RNA polymerase activity;9.86632142492638e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.10867222457611e-05!GO:0005813;centrosome;1.12451686846374e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.33661360415875e-05!GO:0007051;spindle organization and biogenesis;1.50263487072962e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.57678293609004e-05!GO:0016740;transferase activity;1.64290119761147e-05!GO:0005788;endoplasmic reticulum lumen;1.68276884999884e-05!GO:0051168;nuclear export;1.84514887195157e-05!GO:0003724;RNA helicase activity;2.01680307669193e-05!GO:0005815;microtubule organizing center;2.17521086473627e-05!GO:0048522;positive regulation of cellular process;2.25683858685411e-05!GO:0005525;GTP binding;2.36459409320057e-05!GO:0000786;nucleosome;2.60364975354324e-05!GO:0000314;organellar small ribosomal subunit;3.14591427184092e-05!GO:0005763;mitochondrial small ribosomal subunit;3.14591427184092e-05!GO:0006613;cotranslational protein targeting to membrane;3.26816898830939e-05!GO:0006099;tricarboxylic acid cycle;4.74499099683128e-05!GO:0046356;acetyl-CoA catabolic process;4.74499099683128e-05!GO:0046914;transition metal ion binding;4.83706905572854e-05!GO:0006793;phosphorus metabolic process;4.96299878251344e-05!GO:0006796;phosphate metabolic process;4.96299878251344e-05!GO:0051329;interphase of mitotic cell cycle;5.37665770916648e-05!GO:0009892;negative regulation of metabolic process;5.87786015242802e-05!GO:0045786;negative regulation of progression through cell cycle;6.77808546072858e-05!GO:0051789;response to protein stimulus;7.37531309051587e-05!GO:0006986;response to unfolded protein;7.37531309051587e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.86708880817532e-05!GO:0051325;interphase;7.9837705469525e-05!GO:0016481;negative regulation of transcription;8.28832497785158e-05!GO:0009109;coenzyme catabolic process;8.57009064366837e-05!GO:0016787;hydrolase activity;8.57009064366837e-05!GO:0051187;cofactor catabolic process;8.74705062753936e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.74705062753936e-05!GO:0044452;nucleolar part;8.98745747562545e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.5511374417605e-05!GO:0008033;tRNA processing;0.000106967340143751!GO:0043021;ribonucleoprotein binding;0.000114229460190119!GO:0006626;protein targeting to mitochondrion;0.000119658928143824!GO:0031988;membrane-bound vesicle;0.000126573892010986!GO:0006383;transcription from RNA polymerase III promoter;0.000134380989047023!GO:0044440;endosomal part;0.000134380989047023!GO:0010008;endosome membrane;0.000134380989047023!GO:0016023;cytoplasmic membrane-bound vesicle;0.000134380989047023!GO:0000075;cell cycle checkpoint;0.000135334153970878!GO:0008654;phospholipid biosynthetic process;0.000136142835470834!GO:0030867;rough endoplasmic reticulum membrane;0.00014823993268196!GO:0045454;cell redox homeostasis;0.000154985396460968!GO:0005798;Golgi-associated vesicle;0.000161645241075118!GO:0045941;positive regulation of transcription;0.00016238889139311!GO:0003729;mRNA binding;0.000168401345754505!GO:0006084;acetyl-CoA metabolic process;0.000178141197291125!GO:0005770;late endosome;0.000183356836004106!GO:0016310;phosphorylation;0.000190689164197469!GO:0006612;protein targeting to membrane;0.000193744005003955!GO:0005657;replication fork;0.000201332151450951!GO:0032561;guanyl ribonucleotide binding;0.000203338518132814!GO:0019001;guanyl nucleotide binding;0.000203338518132814!GO:0031072;heat shock protein binding;0.000206298887690306!GO:0008361;regulation of cell size;0.000207980911534596!GO:0016363;nuclear matrix;0.000216635222984629!GO:0007243;protein kinase cascade;0.000240792415935365!GO:0016049;cell growth;0.000246562363052415!GO:0003684;damaged DNA binding;0.000266462171070966!GO:0005905;coated pit;0.00027908120795868!GO:0008186;RNA-dependent ATPase activity;0.000284208241110481!GO:0000059;protein import into nucleus, docking;0.000297844703253963!GO:0043681;protein import into mitochondrion;0.000322993210265887!GO:0044431;Golgi apparatus part;0.000332528356449089!GO:0006839;mitochondrial transport;0.000347259016857981!GO:0006352;transcription initiation;0.000355582134699141!GO:0006302;double-strand break repair;0.000383985420043354!GO:0006401;RNA catabolic process;0.000412777718397853!GO:0008094;DNA-dependent ATPase activity;0.000427286951715325!GO:0003690;double-stranded DNA binding;0.000427286951715325!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000432825525063987!GO:0006402;mRNA catabolic process;0.000483760368183454!GO:0045893;positive regulation of transcription, DNA-dependent;0.000492808934826441!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000495118150172898!GO:0001558;regulation of cell growth;0.00049984696576253!GO:0016859;cis-trans isomerase activity;0.000511629029518282!GO:0030880;RNA polymerase complex;0.000527857445040238!GO:0016853;isomerase activity;0.000528195140333402!GO:0031982;vesicle;0.000565316514450066!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000592018497796158!GO:0051052;regulation of DNA metabolic process;0.000596832870564796!GO:0005885;Arp2/3 protein complex;0.000615714521730462!GO:0004527;exonuclease activity;0.000647482214247601!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000655276239317801!GO:0005048;signal sequence binding;0.000671610608878869!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000691239796173276!GO:0003682;chromatin binding;0.000711714596452492!GO:0031410;cytoplasmic vesicle;0.000734031057233175!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000803215455598699!GO:0015399;primary active transmembrane transporter activity;0.000803215455598699!GO:0051252;regulation of RNA metabolic process;0.000803381385703967!GO:0005773;vacuole;0.000803381385703967!GO:0033116;ER-Golgi intermediate compartment membrane;0.000828747285626564!GO:0004004;ATP-dependent RNA helicase activity;0.000840955429058462!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000846207952249998!GO:0007088;regulation of mitosis;0.000851895031291283!GO:0009615;response to virus;0.000865923249007248!GO:0000049;tRNA binding;0.000866207160609839!GO:0008632;apoptotic program;0.000882316350849435!GO:0042802;identical protein binding;0.000904868421804911!GO:0008250;oligosaccharyl transferase complex;0.000978254114800959!GO:0006891;intra-Golgi vesicle-mediated transport;0.000978254114800959!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00100942912704522!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00100942912704522!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00100942912704522!GO:0007059;chromosome segregation;0.00106123318501216!GO:0031252;leading edge;0.00108208177041707!GO:0003746;translation elongation factor activity;0.00109260327601124!GO:0003702;RNA polymerase II transcription factor activity;0.00109260327601124!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00112188528214605!GO:0000428;DNA-directed RNA polymerase complex;0.00112188528214605!GO:0004576;oligosaccharyl transferase activity;0.00124068688916771!GO:0000776;kinetochore;0.00131331653821259!GO:0005769;early endosome;0.00139740978628628!GO:0030132;clathrin coat of coated pit;0.00146553937462206!GO:0048518;positive regulation of biological process;0.00146553937462206!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00146677261098713!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00146677261098713!GO:0019843;rRNA binding;0.00151192514577382!GO:0051087;chaperone binding;0.00153087148254199!GO:0007006;mitochondrial membrane organization and biogenesis;0.00154849210220798!GO:0046474;glycerophospholipid biosynthetic process;0.00155671513497605!GO:0016197;endosome transport;0.00161797338379196!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00162830887633986!GO:0043284;biopolymer biosynthetic process;0.00168339417429916!GO:0009112;nucleobase metabolic process;0.00171624386479432!GO:0046483;heterocycle metabolic process;0.00172450836897849!GO:0030521;androgen receptor signaling pathway;0.00193672724832501!GO:0019899;enzyme binding;0.00197572795797737!GO:0003678;DNA helicase activity;0.00203015508838484!GO:0007010;cytoskeleton organization and biogenesis;0.00205787212494536!GO:0048487;beta-tubulin binding;0.00213865802726138!GO:0051920;peroxiredoxin activity;0.00219840143681936!GO:0007093;mitotic cell cycle checkpoint;0.00227082175745063!GO:0030663;COPI coated vesicle membrane;0.00237394297546442!GO:0030126;COPI vesicle coat;0.00237394297546442!GO:0035258;steroid hormone receptor binding;0.00244071522783282!GO:0008168;methyltransferase activity;0.00253074590819772!GO:0004674;protein serine/threonine kinase activity;0.00253633670462171!GO:0006611;protein export from nucleus;0.00257505436819432!GO:0003711;transcription elongation regulator activity;0.00262107981188972!GO:0007052;mitotic spindle organization and biogenesis;0.0026246807770912!GO:0031968;organelle outer membrane;0.00264518121754268!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00267837121446022!GO:0046489;phosphoinositide biosynthetic process;0.00268776223664622!GO:0048468;cell development;0.00277688768753844!GO:0009116;nucleoside metabolic process;0.00284959790058114!GO:0018196;peptidyl-asparagine modification;0.00285197170014626!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00285197170014626!GO:0019867;outer membrane;0.00285592195987575!GO:0016741;transferase activity, transferring one-carbon groups;0.00300371911767507!GO:0032508;DNA duplex unwinding;0.0031233986482868!GO:0032392;DNA geometric change;0.0031233986482868!GO:0008408;3'-5' exonuclease activity;0.00313939238784119!GO:0006310;DNA recombination;0.00313939238784119!GO:0005874;microtubule;0.00318200813042627!GO:0046966;thyroid hormone receptor binding;0.00319906840397751!GO:0005684;U2-dependent spliceosome;0.00327621311218087!GO:0016272;prefoldin complex;0.00334181254075122!GO:0006405;RNA export from nucleus;0.00338257534681607!GO:0000323;lytic vacuole;0.00338257534681607!GO:0005764;lysosome;0.00338257534681607!GO:0043065;positive regulation of apoptosis;0.00339414977907886!GO:0006417;regulation of translation;0.00345227996924859!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00345227996924859!GO:0004532;exoribonuclease activity;0.00352498479074371!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00352498479074371!GO:0008139;nuclear localization sequence binding;0.00362363690101771!GO:0006595;polyamine metabolic process;0.00386486569368271!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00396486587511313!GO:0048471;perinuclear region of cytoplasm;0.00396486587511313!GO:0000139;Golgi membrane;0.00397486667837077!GO:0043488;regulation of mRNA stability;0.00398951693215868!GO:0043487;regulation of RNA stability;0.00398951693215868!GO:0030137;COPI-coated vesicle;0.00407892544769967!GO:0030659;cytoplasmic vesicle membrane;0.00411728747094789!GO:0016491;oxidoreductase activity;0.00411728747094789!GO:0005791;rough endoplasmic reticulum;0.00412328156730235!GO:0048500;signal recognition particle;0.00427405300018918!GO:0043068;positive regulation of programmed cell death;0.00428446156465891!GO:0016251;general RNA polymerase II transcription factor activity;0.00446420340285141!GO:0009165;nucleotide biosynthetic process;0.00446420340285141!GO:0051540;metal cluster binding;0.00458015514710175!GO:0051536;iron-sulfur cluster binding;0.00458015514710175!GO:0005741;mitochondrial outer membrane;0.00459944142931906!GO:0040008;regulation of growth;0.00460803333034249!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00520389450582517!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00527152262387702!GO:0065009;regulation of a molecular function;0.00528119018556768!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00528119018556768!GO:0007017;microtubule-based process;0.0053819746164843!GO:0000096;sulfur amino acid metabolic process;0.00550761905485399!GO:0008022;protein C-terminus binding;0.0058553039214314!GO:0017166;vinculin binding;0.0061834738835065!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00673111677125391!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00673111677125391!GO:0050681;androgen receptor binding;0.00711015831770332!GO:0006268;DNA unwinding during replication;0.00726496378244849!GO:0045792;negative regulation of cell size;0.00726496378244849!GO:0005637;nuclear inner membrane;0.00731573600359173!GO:0004518;nuclease activity;0.00739804377844459!GO:0046983;protein dimerization activity;0.00741930549850552!GO:0016044;membrane organization and biogenesis;0.0074695612913994!GO:0006950;response to stress;0.00764338002511798!GO:0030176;integral to endoplasmic reticulum membrane;0.0076717173412441!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0076717173412441!GO:0042770;DNA damage response, signal transduction;0.0077697881062771!GO:0030308;negative regulation of cell growth;0.00784884848770138!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00799231269535078!GO:0007050;cell cycle arrest;0.00838647959581982!GO:0008312;7S RNA binding;0.00874780053377869!GO:0009967;positive regulation of signal transduction;0.00910682779374831!GO:0003725;double-stranded RNA binding;0.00915302039732!GO:0008234;cysteine-type peptidase activity;0.00942608486746!GO:0044433;cytoplasmic vesicle part;0.00995163843920546!GO:0030134;ER to Golgi transport vesicle;0.00996413910029473!GO:0019783;small conjugating protein-specific protease activity;0.00996413910029473!GO:0008637;apoptotic mitochondrial changes;0.0101213519668709!GO:0006289;nucleotide-excision repair;0.0101415570709331!GO:0015980;energy derivation by oxidation of organic compounds;0.0102616293835147!GO:0043022;ribosome binding;0.0105934530310103!GO:0000082;G1/S transition of mitotic cell cycle;0.0106760925350004!GO:0005832;chaperonin-containing T-complex;0.0107073935082537!GO:0043492;ATPase activity, coupled to movement of substances;0.0107211224506032!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0107211224506032!GO:0045047;protein targeting to ER;0.0107211224506032!GO:0045892;negative regulation of transcription, DNA-dependent;0.0110606869614508!GO:0030518;steroid hormone receptor signaling pathway;0.0112045347747948!GO:0006213;pyrimidine nucleoside metabolic process;0.0113136132319502!GO:0016584;nucleosome positioning;0.0115940998904897!GO:0006497;protein amino acid lipidation;0.0115942793693116!GO:0008180;signalosome;0.0115971530967683!GO:0031326;regulation of cellular biosynthetic process;0.0116008953846529!GO:0004843;ubiquitin-specific protease activity;0.0116566076490791!GO:0009889;regulation of biosynthetic process;0.0117382873923231!GO:0031124;mRNA 3'-end processing;0.0119365666845587!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0119496488161829!GO:0006144;purine base metabolic process;0.012237914455872!GO:0006091;generation of precursor metabolites and energy;0.012237914455872!GO:0030133;transport vesicle;0.0123268290179587!GO:0030658;transport vesicle membrane;0.0126411585662136!GO:0000123;histone acetyltransferase complex;0.0127602150491967!GO:0000175;3'-5'-exoribonuclease activity;0.0131662838774625!GO:0005669;transcription factor TFIID complex;0.0134826016093436!GO:0006984;ER-nuclear signaling pathway;0.0136058332730509!GO:0006740;NADPH regeneration;0.0138024349565524!GO:0006098;pentose-phosphate shunt;0.0138024349565524!GO:0015631;tubulin binding;0.0139478057121731!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0143199882894597!GO:0030032;lamellipodium biogenesis;0.0145596173426558!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0149437357216354!GO:0006520;amino acid metabolic process;0.0150487014104634!GO:0046467;membrane lipid biosynthetic process;0.0150487014104634!GO:0043130;ubiquitin binding;0.0151683940648951!GO:0032182;small conjugating protein binding;0.0151683940648951!GO:0016790;thiolester hydrolase activity;0.0151683940648951!GO:0030118;clathrin coat;0.0153719577570831!GO:0005869;dynactin complex;0.0154136951839929!GO:0006650;glycerophospholipid metabolic process;0.0154895703620918!GO:0008538;proteasome activator activity;0.0155015294985748!GO:0005862;muscle thin filament tropomyosin;0.0158750291510621!GO:0012506;vesicle membrane;0.0163389053200202!GO:0031529;ruffle organization and biogenesis;0.0163389053200202!GO:0045926;negative regulation of growth;0.0164453753194499!GO:0000178;exosome (RNase complex);0.016636285056286!GO:0006284;base-excision repair;0.0166945751565109!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0170205966657633!GO:0004221;ubiquitin thiolesterase activity;0.0172950572436996!GO:0046822;regulation of nucleocytoplasmic transport;0.0173811903334058!GO:0043596;nuclear replication fork;0.0174791775347727!GO:0051287;NAD binding;0.0176556963946626!GO:0051101;regulation of DNA binding;0.0181758709544199!GO:0005876;spindle microtubule;0.0181758709544199!GO:0008652;amino acid biosynthetic process;0.0184013906308283!GO:0031901;early endosome membrane;0.0192302118262091!GO:0030127;COPII vesicle coat;0.019279487468045!GO:0012507;ER to Golgi transport vesicle membrane;0.019279487468045!GO:0006376;mRNA splice site selection;0.0194987303232733!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0194987303232733!GO:0006338;chromatin remodeling;0.0195580578618084!GO:0030031;cell projection biogenesis;0.019633650543488!GO:0030036;actin cytoskeleton organization and biogenesis;0.0203538002466171!GO:0008320;protein transmembrane transporter activity;0.0203804781333722!GO:0031625;ubiquitin protein ligase binding;0.0207913141542336!GO:0022884;macromolecule transmembrane transporter activity;0.0214138277923242!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0214138277923242!GO:0001836;release of cytochrome c from mitochondria;0.0214711183337307!GO:0015992;proton transport;0.0215804691801871!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0217701293634017!GO:0043624;cellular protein complex disassembly;0.0217868481306528!GO:0031570;DNA integrity checkpoint;0.0218867652295118!GO:0000339;RNA cap binding;0.0221463585457115!GO:0009893;positive regulation of metabolic process;0.0221646242299408!GO:0051539;4 iron, 4 sulfur cluster binding;0.0225271960260868!GO:0043189;H4/H2A histone acetyltransferase complex;0.0227967888911215!GO:0030384;phosphoinositide metabolic process;0.0228914487083047!GO:0030660;Golgi-associated vesicle membrane;0.023287634687705!GO:0007021;tubulin folding;0.0233235455921812!GO:0006354;RNA elongation;0.0233437351474737!GO:0006818;hydrogen transport;0.0235280865274261!GO:0051098;regulation of binding;0.0235280865274261!GO:0033673;negative regulation of kinase activity;0.0235280865274261!GO:0006469;negative regulation of protein kinase activity;0.0235280865274261!GO:0032200;telomere organization and biogenesis;0.0238952015759754!GO:0000723;telomere maintenance;0.0238952015759754!GO:0000228;nuclear chromosome;0.0239156178656599!GO:0042158;lipoprotein biosynthetic process;0.0240498203060098!GO:0047485;protein N-terminus binding;0.0242743218377786!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0246242570207333!GO:0015002;heme-copper terminal oxidase activity;0.0246242570207333!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0246242570207333!GO:0004129;cytochrome-c oxidase activity;0.0246242570207333!GO:0051059;NF-kappaB binding;0.0246242570207333!GO:0006506;GPI anchor biosynthetic process;0.0249349301529359!GO:0000209;protein polyubiquitination;0.0253787152244328!GO:0007040;lysosome organization and biogenesis;0.0256068166402989!GO:0030125;clathrin vesicle coat;0.0262502712778286!GO:0030665;clathrin coated vesicle membrane;0.0262502712778286!GO:0006541;glutamine metabolic process;0.0268986039480795!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0271304550397918!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0271304550397918!GO:0045045;secretory pathway;0.0271357205151524!GO:0032984;macromolecular complex disassembly;0.0272450224580172!GO:0030503;regulation of cell redox homeostasis;0.0272450224580172!GO:0006378;mRNA polyadenylation;0.0272450224580172!GO:0035267;NuA4 histone acetyltransferase complex;0.027321982842373!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0277642062261212!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0283772429900883!GO:0006275;regulation of DNA replication;0.0289349215618908!GO:0006509;membrane protein ectodomain proteolysis;0.0289349215618908!GO:0033619;membrane protein proteolysis;0.0289349215618908!GO:0046982;protein heterodimerization activity;0.0298618314405055!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0304726290584074!GO:0007033;vacuole organization and biogenesis;0.0307525484127561!GO:0051348;negative regulation of transferase activity;0.030875494467666!GO:0009303;rRNA transcription;0.0319158821913455!GO:0007346;regulation of progression through mitotic cell cycle;0.0331809079737574!GO:0006367;transcription initiation from RNA polymerase II promoter;0.033464673689964!GO:0005784;translocon complex;0.033803752703639!GO:0008287;protein serine/threonine phosphatase complex;0.0340112366539068!GO:0004003;ATP-dependent DNA helicase activity;0.0343259096236001!GO:0006360;transcription from RNA polymerase I promoter;0.0343259096236001!GO:0046979;TAP2 binding;0.0343259096236001!GO:0046977;TAP binding;0.0343259096236001!GO:0046978;TAP1 binding;0.0343259096236001!GO:0000097;sulfur amino acid biosynthetic process;0.0345298287848819!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0353715830938788!GO:0042393;histone binding;0.0353715830938788!GO:0009119;ribonucleoside metabolic process;0.0354668184779095!GO:0000781;chromosome, telomeric region;0.0355327356857714!GO:0031902;late endosome membrane;0.0356989522232483!GO:0006505;GPI anchor metabolic process;0.035841720303631!GO:0007030;Golgi organization and biogenesis;0.0366671539835846!GO:0030833;regulation of actin filament polymerization;0.0367813623329169!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0367813623329169!GO:0010257;NADH dehydrogenase complex assembly;0.0367813623329169!GO:0033108;mitochondrial respiratory chain complex assembly;0.0367813623329169!GO:0022415;viral reproductive process;0.0377480721243995!GO:0043241;protein complex disassembly;0.0379708259501292!GO:0000922;spindle pole;0.0382665734384136!GO:0009451;RNA modification;0.0401159226573606!GO:0016407;acetyltransferase activity;0.040324656020824!GO:0030522;intracellular receptor-mediated signaling pathway;0.040324656020824!GO:0030508;thiol-disulfide exchange intermediate activity;0.040324656020824!GO:0030100;regulation of endocytosis;0.0407155275782127!GO:0030911;TPR domain binding;0.0409077246397134!GO:0031123;RNA 3'-end processing;0.0412885752195083!GO:0031371;ubiquitin conjugating enzyme complex;0.041552636165531!GO:0005758;mitochondrial intermembrane space;0.0416206280301107!GO:0000738;DNA catabolic process, exonucleolytic;0.0421280541749091!GO:0022411;cellular component disassembly;0.0425586741383248!GO:0050811;GABA receptor binding;0.0429053436038394!GO:0006917;induction of apoptosis;0.0434843266463267!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0435904896770088!GO:0008537;proteasome activator complex;0.0442535882213186!GO:0006270;DNA replication initiation;0.044710997666721!GO:0030496;midbody;0.0448214691658933!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0451890241625374!GO:0004680;casein kinase activity;0.0472446293509172!GO:0017134;fibroblast growth factor binding;0.0473438532022723!GO:0030433;ER-associated protein catabolic process;0.0478122118480959!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0478122118480959!GO:0000792;heterochromatin;0.0486208337457573!GO:0006564;L-serine biosynthetic process;0.0487426000439446!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0487579405288438!GO:0003923;GPI-anchor transamidase activity;0.0487679379293469!GO:0016255;attachment of GPI anchor to protein;0.0487679379293469!GO:0042765;GPI-anchor transamidase complex;0.0487679379293469!GO:0032507;maintenance of cellular protein localization;0.0491116304048578!GO:0006596;polyamine biosynthetic process;0.0497786690128483 | |||
|sample_id=10853 | |sample_id=10853 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=IRF7:1.84275316775;STAT1,3:1.78315756763;AIRE:1.5227446165;IRF1,2:1.48760517933;EVI1:1.46977599726;bHLH_family:1.28587927611;ZBTB16:1.24506250816;ZNF384:1.17348862186;ELK1,4_GABP{A,B1}:1.13025498723;RXR{A,B,G}:1.11299180473;UFEwm:1.0485767311;ZNF148:1.02793322544;POU1F1:0.861716237235;ONECUT1,2:0.784014854717;CDX1,2,4:0.783874056939;NKX3-1:0.762936231481;FOXQ1:0.725420901058;TFDP1:0.711528349722;ZNF143:0.668667053369;EN1,2:0.655166709824;MYB:0.654540454981;NR6A1:0.626991112353;TEF:0.610253255951;TEAD1:0.607305590726;HMGA1,2:0.589241128231;E2F1..5:0.564862264044;PITX1..3:0.537794294301;NFE2L1:0.536606937918;CEBPA,B_DDIT3:0.471129877755;GLI1..3:0.466963866367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464093942966;HOX{A4,D4}:0.4422524091;NFY{A,B,C}:0.432214212112;LMO2:0.388479105948;PDX1:0.388343378601;PAX6:0.38500609983;HSF1,2:0.378144657293;HIF1A:0.377544485491;FOXL1:0.362936322415;GFI1B:0.337015067283;TOPORS:0.32463737129;YY1:0.316749490666;GFI1:0.305321259163;NKX6-1,2:0.290758972429;ADNP_IRX_SIX_ZHX:0.272950241974;PAX8:0.24403098285;POU2F1..3:0.232588074385;POU5F1:0.231062324508;HOX{A5,B5}:0.227183626753;CDC5L:0.213906728771;PAX4:0.162001128893;TFAP2B:0.156491779678;RBPJ:0.155868038603;STAT5{A,B}:0.152903186723;FOXD3:0.141367870278;HOXA9_MEIS1:0.134618178856;ZIC1..3:0.123498651359;NFIX:0.113039813652;ATF4:0.0883526781753;ALX1:0.0648569346016;AHR_ARNT_ARNT2:0.0599480359785;FOXM1:0.0506336163664;HOX{A6,A7,B6,B7}:0.046105540773;PBX1:0.0456635992751;NRF1:0.0452735659344;STAT2,4,6:0.0279754237468;TLX1..3_NFIC{dimer}:0.0198671833818;BACH2:0.0175436149495;PRRX1,2:0.0118501422084;CUX2:-0.00701833506741;NKX2-2,8:-0.0127831032781;GZF1:-0.0170139052583;GATA4:-0.0205876951815;HNF4A_NR2F1,2:-0.0244896073233;NKX3-2:-0.0274617782061;PAX1,9:-0.0302032949257;SOX17:-0.0483972644153;ALX4:-0.0485303664151;FOXP1:-0.0559685150243;PAX3,7:-0.0745806799558;KLF4:-0.0914472211389;IKZF2:-0.105355578406;MYOD1:-0.111099814273;ZBTB6:-0.125239121434;FOS_FOS{B,L1}_JUN{B,D}:-0.129475307849;ARID5B:-0.13761669389;BREu{core}:-0.142219036194;ELF1,2,4:-0.145953077464;RREB1:-0.164258892285;HLF:-0.170862873676;NFKB1_REL_RELA:-0.17148831122;GTF2A1,2:-0.175166760843;LHX3,4:-0.181292431945;XCPE1{core}:-0.195490418579;NFE2:-0.195577451205;MTE{core}:-0.197415803139;OCT4_SOX2{dimer}:-0.202973704557;PPARG:-0.21395743957;TP53:-0.234800341405;HES1:-0.240796688512;TBP:-0.247922706058;MZF1:-0.248608036495;SNAI1..3:-0.255783385641;TFAP2{A,C}:-0.262326710286;ESR1:-0.270989909872;EGR1..3:-0.287358102136;CREB1:-0.294456363867;SRF:-0.298178020414;NR3C1:-0.301214371746;ZEB1:-0.30222315029;REST:-0.310270625655;RFX1:-0.316712445558;FOXO1,3,4:-0.325989800527;DMAP1_NCOR{1,2}_SMARC:-0.338460763073;HNF1A:-0.339233102065;FOXP3:-0.345360309291;EP300:-0.347917589401;MAZ:-0.378870463207;IKZF1:-0.382942648448;NANOG:-0.386099240985;POU6F1:-0.392457289853;GTF2I:-0.399074692369;FOSL2:-0.40034885645;ATF5_CREB3:-0.424744206438;MYBL2:-0.441116333715;PAX5:-0.44941774111;NFE2L2:-0.450720729849;NKX2-3_NKX2-5:-0.450991628853;SP1:-0.451311405576;HBP1_HMGB_SSRP1_UBTF:-0.472218392365;TBX4,5:-0.476499250043;VSX1,2:-0.492022533842;ZFP161:-0.49392034872;HIC1:-0.506438529205;MTF1:-0.516498325683;ATF2:-0.523998892147;MED-1{core}:-0.529180766773;NR5A1,2:-0.532861004454;SOX{8,9,10}:-0.536477779604;AR:-0.536575584662;TFCP2:-0.550940997757;HMX1:-0.569588872196;SPI1:-0.569753990742;NFATC1..3:-0.575472988562;RUNX1..3:-0.57822746923;PATZ1:-0.587823876341;GATA6:-0.597855412746;FOX{I1,J2}:-0.621852595534;NKX2-1,4:-0.631832875006;PAX2:-0.634896009353;TAL1_TCF{3,4,12}:-0.641695718695;PRDM1:-0.642799803823;ETS1,2:-0.659509058035;FOX{D1,D2}:-0.666149951711;FOXA2:-0.675124406357;SPIB:-0.67708752194;BPTF:-0.683655587723;MAFB:-0.684682008906;SOX2:-0.69270695341;CRX:-0.719801866228;FOXN1:-0.746015685561;GCM1,2:-0.754197887717;RXRA_VDR{dimer}:-0.785393553907;MYFfamily:-0.786069668325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.791827660793;TLX2:-0.80440058266;T:-0.820054099589;DBP:-0.836306615291;MEF2{A,B,C,D}:-0.845060610477;HAND1,2:-0.845661600141;POU3F1..4:-0.855152729926;TFAP4:-0.876141955131;NFIL3:-0.891012522084;SREBF1,2:-0.919784042096;NR1H4:-0.922226921614;EBF1:-0.937462564925;FOX{F1,F2,J1}:-0.959547363846;XBP1:-0.978233010993;SOX5:-1.0069955333;ZNF423:-1.02962619188;JUN:-1.03708158126;NHLH1,2:-1.03863940826;ESRRA:-1.04259877414;NANOG{mouse}:-1.08752188303;ZNF238:-1.12109367057;LEF1_TCF7_TCF7L1,2:-1.12226429421;SPZ1:-1.26344033785;ATF6:-1.29170984653;TGIF1:-1.34969627563;RFX2..5_RFXANK_RFXAP:-1.39653683881;SMAD1..7,9:-1.40548928779;RORA:-1.54354071946 | |top_motifs=IRF7:1.84275316775;STAT1,3:1.78315756763;AIRE:1.5227446165;IRF1,2:1.48760517933;EVI1:1.46977599726;bHLH_family:1.28587927611;ZBTB16:1.24506250816;ZNF384:1.17348862186;ELK1,4_GABP{A,B1}:1.13025498723;RXR{A,B,G}:1.11299180473;UFEwm:1.0485767311;ZNF148:1.02793322544;POU1F1:0.861716237235;ONECUT1,2:0.784014854717;CDX1,2,4:0.783874056939;NKX3-1:0.762936231481;FOXQ1:0.725420901058;TFDP1:0.711528349722;ZNF143:0.668667053369;EN1,2:0.655166709824;MYB:0.654540454981;NR6A1:0.626991112353;TEF:0.610253255951;TEAD1:0.607305590726;HMGA1,2:0.589241128231;E2F1..5:0.564862264044;PITX1..3:0.537794294301;NFE2L1:0.536606937918;CEBPA,B_DDIT3:0.471129877755;GLI1..3:0.466963866367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464093942966;HOX{A4,D4}:0.4422524091;NFY{A,B,C}:0.432214212112;LMO2:0.388479105948;PDX1:0.388343378601;PAX6:0.38500609983;HSF1,2:0.378144657293;HIF1A:0.377544485491;FOXL1:0.362936322415;GFI1B:0.337015067283;TOPORS:0.32463737129;YY1:0.316749490666;GFI1:0.305321259163;NKX6-1,2:0.290758972429;ADNP_IRX_SIX_ZHX:0.272950241974;PAX8:0.24403098285;POU2F1..3:0.232588074385;POU5F1:0.231062324508;HOX{A5,B5}:0.227183626753;CDC5L:0.213906728771;PAX4:0.162001128893;TFAP2B:0.156491779678;RBPJ:0.155868038603;STAT5{A,B}:0.152903186723;FOXD3:0.141367870278;HOXA9_MEIS1:0.134618178856;ZIC1..3:0.123498651359;NFIX:0.113039813652;ATF4:0.0883526781753;ALX1:0.0648569346016;AHR_ARNT_ARNT2:0.0599480359785;FOXM1:0.0506336163664;HOX{A6,A7,B6,B7}:0.046105540773;PBX1:0.0456635992751;NRF1:0.0452735659344;STAT2,4,6:0.0279754237468;TLX1..3_NFIC{dimer}:0.0198671833818;BACH2:0.0175436149495;PRRX1,2:0.0118501422084;CUX2:-0.00701833506741;NKX2-2,8:-0.0127831032781;GZF1:-0.0170139052583;GATA4:-0.0205876951815;HNF4A_NR2F1,2:-0.0244896073233;NKX3-2:-0.0274617782061;PAX1,9:-0.0302032949257;SOX17:-0.0483972644153;ALX4:-0.0485303664151;FOXP1:-0.0559685150243;PAX3,7:-0.0745806799558;KLF4:-0.0914472211389;IKZF2:-0.105355578406;MYOD1:-0.111099814273;ZBTB6:-0.125239121434;FOS_FOS{B,L1}_JUN{B,D}:-0.129475307849;ARID5B:-0.13761669389;BREu{core}:-0.142219036194;ELF1,2,4:-0.145953077464;RREB1:-0.164258892285;HLF:-0.170862873676;NFKB1_REL_RELA:-0.17148831122;GTF2A1,2:-0.175166760843;LHX3,4:-0.181292431945;XCPE1{core}:-0.195490418579;NFE2:-0.195577451205;MTE{core}:-0.197415803139;OCT4_SOX2{dimer}:-0.202973704557;PPARG:-0.21395743957;TP53:-0.234800341405;HES1:-0.240796688512;TBP:-0.247922706058;MZF1:-0.248608036495;SNAI1..3:-0.255783385641;TFAP2{A,C}:-0.262326710286;ESR1:-0.270989909872;EGR1..3:-0.287358102136;CREB1:-0.294456363867;SRF:-0.298178020414;NR3C1:-0.301214371746;ZEB1:-0.30222315029;REST:-0.310270625655;RFX1:-0.316712445558;FOXO1,3,4:-0.325989800527;DMAP1_NCOR{1,2}_SMARC:-0.338460763073;HNF1A:-0.339233102065;FOXP3:-0.345360309291;EP300:-0.347917589401;MAZ:-0.378870463207;IKZF1:-0.382942648448;NANOG:-0.386099240985;POU6F1:-0.392457289853;GTF2I:-0.399074692369;FOSL2:-0.40034885645;ATF5_CREB3:-0.424744206438;MYBL2:-0.441116333715;PAX5:-0.44941774111;NFE2L2:-0.450720729849;NKX2-3_NKX2-5:-0.450991628853;SP1:-0.451311405576;HBP1_HMGB_SSRP1_UBTF:-0.472218392365;TBX4,5:-0.476499250043;VSX1,2:-0.492022533842;ZFP161:-0.49392034872;HIC1:-0.506438529205;MTF1:-0.516498325683;ATF2:-0.523998892147;MED-1{core}:-0.529180766773;NR5A1,2:-0.532861004454;SOX{8,9,10}:-0.536477779604;AR:-0.536575584662;TFCP2:-0.550940997757;HMX1:-0.569588872196;SPI1:-0.569753990742;NFATC1..3:-0.575472988562;RUNX1..3:-0.57822746923;PATZ1:-0.587823876341;GATA6:-0.597855412746;FOX{I1,J2}:-0.621852595534;NKX2-1,4:-0.631832875006;PAX2:-0.634896009353;TAL1_TCF{3,4,12}:-0.641695718695;PRDM1:-0.642799803823;ETS1,2:-0.659509058035;FOX{D1,D2}:-0.666149951711;FOXA2:-0.675124406357;SPIB:-0.67708752194;BPTF:-0.683655587723;MAFB:-0.684682008906;SOX2:-0.69270695341;CRX:-0.719801866228;FOXN1:-0.746015685561;GCM1,2:-0.754197887717;RXRA_VDR{dimer}:-0.785393553907;MYFfamily:-0.786069668325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.791827660793;TLX2:-0.80440058266;T:-0.820054099589;DBP:-0.836306615291;MEF2{A,B,C,D}:-0.845060610477;HAND1,2:-0.845661600141;POU3F1..4:-0.855152729926;TFAP4:-0.876141955131;NFIL3:-0.891012522084;SREBF1,2:-0.919784042096;NR1H4:-0.922226921614;EBF1:-0.937462564925;FOX{F1,F2,J1}:-0.959547363846;XBP1:-0.978233010993;SOX5:-1.0069955333;ZNF423:-1.02962619188;JUN:-1.03708158126;NHLH1,2:-1.03863940826;ESRRA:-1.04259877414;NANOG{mouse}:-1.08752188303;ZNF238:-1.12109367057;LEF1_TCF7_TCF7L1,2:-1.12226429421;SPZ1:-1.26344033785;ATF6:-1.29170984653;TGIF1:-1.34969627563;RFX2..5_RFXANK_RFXAP:-1.39653683881;SMAD1..7,9:-1.40548928779;RORA:-1.54354071946 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10853-111F7;search_select_hide=table117:FF:10853-111F7 | |||
}} | }} | ||
Latest revision as of 15:10, 3 June 2020
| Name: | mesothelioma cell line:Mero-82 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13069 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13069
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13069
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.445 |
| 10 | 10 | 0.161 |
| 100 | 100 | 0.0817 |
| 101 | 101 | 0.651 |
| 102 | 102 | 0.322 |
| 103 | 103 | 0.646 |
| 104 | 104 | 0.677 |
| 105 | 105 | 0.0323 |
| 106 | 106 | 0.557 |
| 107 | 107 | 0.903 |
| 108 | 108 | 0.957 |
| 109 | 109 | 0.209 |
| 11 | 11 | 0.789 |
| 110 | 110 | 0.223 |
| 111 | 111 | 0.321 |
| 112 | 112 | 0.0421 |
| 113 | 113 | 0.0459 |
| 114 | 114 | 0.834 |
| 115 | 115 | 0.614 |
| 116 | 116 | 0.582 |
| 117 | 117 | 0.0421 |
| 118 | 118 | 0.155 |
| 119 | 119 | 0.726 |
| 12 | 12 | 0.0782 |
| 120 | 120 | 0.344 |
| 121 | 121 | 0.894 |
| 122 | 122 | 0.961 |
| 123 | 123 | 0.472 |
| 124 | 124 | 0.63 |
| 125 | 125 | 0.906 |
| 126 | 126 | 0.558 |
| 127 | 127 | 0.871 |
| 128 | 128 | 0.114 |
| 129 | 129 | 0.915 |
| 13 | 13 | 0.0217 |
| 130 | 130 | 0.72 |
| 131 | 131 | 0.567 |
| 132 | 132 | 0.656 |
| 133 | 133 | 0.5 |
| 134 | 134 | 0.174 |
| 135 | 135 | 0.0311 |
| 136 | 136 | 0.045 |
| 137 | 137 | 0.241 |
| 138 | 138 | 0.214 |
| 139 | 139 | 0.108 |
| 14 | 14 | 0.2 |
| 140 | 140 | 0.849 |
| 141 | 141 | 0.59 |
| 142 | 142 | 0.369 |
| 143 | 143 | 0.943 |
| 144 | 144 | 0.8 |
| 145 | 145 | 0.668 |
| 146 | 146 | 0.384 |
| 147 | 147 | 0.403 |
| 148 | 148 | 0.462 |
| 149 | 149 | 0.123 |
| 15 | 15 | 0.646 |
| 150 | 150 | 0.0968 |
| 151 | 151 | 0.395 |
| 152 | 152 | 0.0188 |
| 153 | 153 | 0.907 |
| 154 | 154 | 0.371 |
| 155 | 155 | 0.87 |
| 156 | 156 | 0.81 |
| 157 | 157 | 0.28 |
| 158 | 158 | 0.396 |
| 159 | 159 | 0.746 |
| 16 | 16 | 0.868 |
| 160 | 160 | 0.834 |
| 161 | 161 | 0.686 |
| 162 | 162 | 0.247 |
| 163 | 163 | 0.391 |
| 164 | 164 | 0.892 |
| 165 | 165 | 0.43 |
| 166 | 166 | 0.191 |
| 167 | 167 | 0.069 |
| 168 | 168 | 0.603 |
| 169 | 169 | 0.408 |
| 17 | 17 | 0.931 |
| 18 | 18 | 0.288 |
| 19 | 19 | 0.218 |
| 2 | 2 | 0.148 |
| 20 | 20 | 0.177 |
| 21 | 21 | 0.0651 |
| 22 | 22 | 0.763 |
| 23 | 23 | 0.0203 |
| 24 | 24 | 0.75 |
| 25 | 25 | 0.577 |
| 26 | 26 | 0.609 |
| 27 | 27 | 0.743 |
| 28 | 28 | 0.7 |
| 29 | 29 | 0.044 |
| 3 | 3 | 0.509 |
| 30 | 30 | 0.628 |
| 31 | 31 | 0.383 |
| 32 | 32 | 0.978 |
| 33 | 33 | 0.589 |
| 34 | 34 | 0.113 |
| 35 | 35 | 0.813 |
| 36 | 36 | 0.511 |
| 37 | 37 | 0.0582 |
| 38 | 38 | 0.955 |
| 39 | 39 | 0.992 |
| 4 | 4 | 0.11 |
| 40 | 40 | 0.552 |
| 41 | 41 | 0.0331 |
| 42 | 42 | 0.734 |
| 43 | 43 | 0.735 |
| 44 | 44 | 0.377 |
| 45 | 45 | 0.283 |
| 46 | 46 | 0.997 |
| 47 | 47 | 0.577 |
| 48 | 48 | 0.55 |
| 49 | 49 | 0.99 |
| 5 | 5 | 0.123 |
| 50 | 50 | 0.331 |
| 51 | 51 | 0.784 |
| 52 | 52 | 0.262 |
| 53 | 53 | 0.282 |
| 54 | 54 | 0.955 |
| 55 | 55 | 0.886 |
| 56 | 56 | 0.949 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.536 |
| 59 | 59 | 0.448 |
| 6 | 6 | 0.42 |
| 60 | 60 | 0.309 |
| 61 | 61 | 0.0292 |
| 62 | 62 | 0.403 |
| 63 | 63 | 0.947 |
| 64 | 64 | 0.981 |
| 65 | 65 | 0.609 |
| 66 | 66 | 3.20764e-9 |
| 67 | 67 | 0.886 |
| 68 | 68 | 0.774 |
| 69 | 69 | 0.346 |
| 7 | 7 | 0.427 |
| 70 | 70 | 0.561 |
| 71 | 71 | 0.242 |
| 72 | 72 | 0.866 |
| 73 | 73 | 0.0293 |
| 74 | 74 | 0.228 |
| 75 | 75 | 0.00811 |
| 76 | 76 | 0.101 |
| 77 | 77 | 0.189 |
| 78 | 78 | 0.576 |
| 79 | 79 | 0.977 |
| 8 | 8 | 0.861 |
| 80 | 80 | 0.0283 |
| 81 | 81 | 0.615 |
| 82 | 82 | 0.223 |
| 83 | 83 | 0.642 |
| 84 | 84 | 0.328 |
| 85 | 85 | 0.214 |
| 86 | 86 | 0.86 |
| 87 | 87 | 0.0818 |
| 88 | 88 | 0.852 |
| 89 | 89 | 0.193 |
| 9 | 9 | 0.165 |
| 90 | 90 | 0.2 |
| 91 | 91 | 0.171 |
| 92 | 92 | 0.143 |
| 93 | 93 | 0.336 |
| 94 | 94 | 0.618 |
| 95 | 95 | 0.04 |
| 96 | 96 | 0.317 |
| 97 | 97 | 0.705 |
| 98 | 98 | 0.413 |
| 99 | 99 | 0.327 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13069
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
