FF:10854-111F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005101 | |||
|accession_numbers=CAGE;DRX007943;DRR008815;DRZ000240;DRZ001625;DRZ011590;DRZ012975 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:25470156..25470227,+!p2@RARB!1.63!42.09!RARB;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.22!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.34!25.25!TFAP2A;;chr15:67418119..67418162,+!p5@SMAD3!1.33!22.74!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!1.31!22.21!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!1.25!16.66!HOXB6;;chr15:67418177..67418204,+!p9@SMAD3!1.22!15.76!SMAD3;;chr3:25469724..25469773,+!p1@RARB!1.21!22.21!RARB;;chr15:67418047..67418093,+!p4@SMAD3!1.17!17.55!SMAD3;;chr11:65686802..65686818,+!p6@DRAP1!1.09!19.70!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.04!9.85!RARB;;chr3:170076314..170076334,+!p2@SKIL!1.02!12.36!SKIL;;chr8:67525443..67525459,-!p2@MYBL1!0.98!12.89!MYBL1;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.07!ZFP64;;chr5:2751762..2751784,-!p1@IRX2!0.96!8.06!IRX2;;chr10:48355030..48355090,+!p1@ZNF488!0.94!10.03!ZNF488;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.95!TFAP2A;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.28!NFIX;;chr7:35293685..35293718,-!p1@TBX20!0.92!7.34!TBX20;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.98!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.19!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!0.89!10.57!PITX1;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.88!PPARG;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.88!6.63!HOXC5;;chr15:96869114..96869160,+!p11@NR2F2!0.86!8.60!NR2F2;;chr15:67418099..67418118,+!p16@SMAD3!0.86!6.27!SMAD3;;chr21:36421535..36421610,-!p2@RUNX1!0.85!22.92!RUNX1;;chr12:54332608..54332636,+!p1@HOXC13!0.82!5.55!HOXC13;;chr8:11561684..11561751,+!p1@GATA4!0.82!5.55!GATA4;;chr3:138665937..138665968,-!p1@FOXL2!0.82!5.55!FOXL2;;chr17:40477163..40477183,-!p7@STAT3!0.82!5.55!STAT3;;chr5:92918919..92918942,+!p1@NR2F1!0.81!26.15!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!0.81!8.06!HOXB7;;chr15:67357924..67357952,+!p2@SMAD3!0.80!38.50!SMAD3;;chr12:80084737..80084763,-!p3@PAWR!0.80!21.13!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.52!HOXB7;;chr7:26191809..26191890,+!p1@NFE2L3!0.79!27.76!NFE2L3;;chr3:114343768..114343822,-!p1@ZBTB20!0.79!24.36!ZBTB20;;chr21:38071430..38071456,+!p1@SIM2!0.79!5.19!SIM2;;chr11:46299199..46299233,+!p1@CREB3L1!0.78!28.30!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.78!6.27!TBX18;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.84!ZNF323;;chr11:65686732..65686756,+!p2@DRAP1!0.76!22.03!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.76!6.27!TFAP2C;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.52!FOSL1;;chr15:96869255..96869291,+!p6@NR2F2!0.75!8.78!NR2F2;;chr5:43067636..43067674,+!p6@ZNF131!0.75!6.45!ZNF131;;chr21:38071403..38071428,+!p2@SIM2!0.75!4.66!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.74!178.91!SOX4;;chr15:96869165..96869183,+!p20@NR2F2!0.74!4.48!NR2F2;;chr14:73360799..73360817,-!p1@DPF3!0.73!16.48!DPF3;;chr6:1389789..1389821,+!p1@FOXF2!0.73!6.27!FOXF2;;chr11:65687243..65687276,+!p8@DRAP1!0.72!5.91!DRAP1;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.84!NR2F2;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.30!BNC1;;chrY:21906594..21906622,-!p1@KDM5D!0.72!4.30!KDM5D;;chr1:44513995..44514031,+!p1@KLF17!0.71!4.12!KLF17;;chr18:51750414..51750449,-!p5@MBD2!0.70!8.24!MBD2;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.66!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.69!3.94!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.68!3.76!HOXC4;;chr2:100721881..100721904,-!p6@AFF3!0.68!3.76!AFF3;;chr2:172949484..172949522,+!p1@DLX1!0.68!3.76!DLX1;;chr20:30193083..30193098,+!p1@ID1!0.67!348.15!ID1;;chr12:124873852..124873881,-!p3@NCOR2!0.67!25.25!NCOR2;;chr9:130954041..130954121,-!p2@CIZ1!0.67!18.27!CIZ1;;chr18:51690935..51690957,-!p8@MBD2!0.67!5.55!MBD2;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.78!FOSL1;;chr15:96874012..96874042,+!p2@NR2F2!0.66!36.89!NR2F2;;chr12:80084279..80084293,-!p8@PAWR!0.66!6.45!PAWR;;chr10:119302232..119302265,+!p1@EMX2!0.66!3.58!EMX2;;chr5:321810..321877,+!p1@AHRR!0.65!12.54!AHRR;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.47!SOX9;;chr9:4300050..4300118,-!p1@GLIS3!0.64!25.79!GLIS3;;chr3:128206762..128206781,-!p2@GATA2!0.64!24.18!GATA2;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.91!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.64!13.97!BRCA1;;chr6:85474299..85474324,-!p1@TBX18!0.64!6.63!TBX18;;chr9:99180597..99180614,-!p3@ZNF367!0.64!3.94!ZNF367;;chr5:92918956..92918969,+!p4@NR2F1!0.64!3.76!NR2F1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.49!NCOA7;;chr19:13134457..13134462,+!p5@NFIX!0.63!6.45!NFIX;;chr15:96869206..96869220,+!p21@NR2F2!0.63!3.22!NR2F2;;chr9:4299552..4299598,-!p5@GLIS3!0.62!5.91!GLIS3;;chr3:42695180..42695201,+!p2@ZBTB47!0.61!3.04!ZBTB47;;chr12:54393880..54393962,+!p1@HOXC9!0.61!3.04!HOXC9;;chr5:92918894..92918912,+!p2@NR2F1!0.60!11.28!NR2F1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.85!SMARCA2;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.66!NR2F2;;chr12:80083544..80083558,-!p13@PAWR!0.60!3.94!PAWR;;chr12:80084303..80084332,-!p1@PAWR!0.59!20.77!PAWR;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.16!GLI2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr12:54402745..54402788,+!p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| |expression_enrichment_score=chr3:25470156..25470227,+!p2@RARB!1.63!42.09!RARB;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.22!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.34!25.25!TFAP2A;;chr15:67418119..67418162,+!p5@SMAD3!1.33!22.74!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!1.31!22.21!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!1.25!16.66!HOXB6;;chr15:67418177..67418204,+!p9@SMAD3!1.22!15.76!SMAD3;;chr3:25469724..25469773,+!p1@RARB!1.21!22.21!RARB;;chr15:67418047..67418093,+!p4@SMAD3!1.17!17.55!SMAD3;;chr11:65686802..65686818,+!p6@DRAP1!1.09!19.70!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.04!9.85!RARB;;chr3:170076314..170076334,+!p2@SKIL!1.02!12.36!SKIL;;chr8:67525443..67525459,-!p2@MYBL1!0.98!12.89!MYBL1;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.07!ZFP64;;chr5:2751762..2751784,-!p1@IRX2!0.96!8.06!IRX2;;chr10:48355030..48355090,+!p1@ZNF488!0.94!10.03!ZNF488;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.95!TFAP2A;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.28!NFIX;;chr7:35293685..35293718,-!p1@TBX20!0.92!7.34!TBX20;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.98!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.19!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!0.89!10.57!PITX1;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.88!PPARG;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.88!6.63!HOXC5;;chr15:96869114..96869160,+!p11@NR2F2!0.86!8.60!NR2F2;;chr15:67418099..67418118,+!p16@SMAD3!0.86!6.27!SMAD3;;chr21:36421535..36421610,-!p2@RUNX1!0.85!22.92!RUNX1;;chr12:54332608..54332636,+!p1@HOXC13!0.82!5.55!HOXC13;;chr8:11561684..11561751,+!p1@GATA4!0.82!5.55!GATA4;;chr3:138665937..138665968,-!p1@FOXL2!0.82!5.55!FOXL2;;chr17:40477163..40477183,-!p7@STAT3!0.82!5.55!STAT3;;chr5:92918919..92918942,+!p1@NR2F1!0.81!26.15!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!0.81!8.06!HOXB7;;chr15:67357924..67357952,+!p2@SMAD3!0.80!38.50!SMAD3;;chr12:80084737..80084763,-!p3@PAWR!0.80!21.13!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.52!HOXB7;;chr7:26191809..26191890,+!p1@NFE2L3!0.79!27.76!NFE2L3;;chr3:114343768..114343822,-!p1@ZBTB20!0.79!24.36!ZBTB20;;chr21:38071430..38071456,+!p1@SIM2!0.79!5.19!SIM2;;chr11:46299199..46299233,+!p1@CREB3L1!0.78!28.30!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.78!6.27!TBX18;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.84!ZNF323;;chr11:65686732..65686756,+!p2@DRAP1!0.76!22.03!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.76!6.27!TFAP2C;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.52!FOSL1;;chr15:96869255..96869291,+!p6@NR2F2!0.75!8.78!NR2F2;;chr5:43067636..43067674,+!p6@ZNF131!0.75!6.45!ZNF131;;chr21:38071403..38071428,+!p2@SIM2!0.75!4.66!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.74!178.91!SOX4;;chr15:96869165..96869183,+!p20@NR2F2!0.74!4.48!NR2F2;;chr14:73360799..73360817,-!p1@DPF3!0.73!16.48!DPF3;;chr6:1389789..1389821,+!p1@FOXF2!0.73!6.27!FOXF2;;chr11:65687243..65687276,+!p8@DRAP1!0.72!5.91!DRAP1;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.84!NR2F2;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.30!BNC1;;chrY:21906594..21906622,-!p1@KDM5D!0.72!4.30!KDM5D;;chr1:44513995..44514031,+!p1@KLF17!0.71!4.12!KLF17;;chr18:51750414..51750449,-!p5@MBD2!0.70!8.24!MBD2;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.66!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.69!3.94!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.68!3.76!HOXC4;;chr2:100721881..100721904,-!p6@AFF3!0.68!3.76!AFF3;;chr2:172949484..172949522,+!p1@DLX1!0.68!3.76!DLX1;;chr20:30193083..30193098,+!p1@ID1!0.67!348.15!ID1;;chr12:124873852..124873881,-!p3@NCOR2!0.67!25.25!NCOR2;;chr9:130954041..130954121,-!p2@CIZ1!0.67!18.27!CIZ1;;chr18:51690935..51690957,-!p8@MBD2!0.67!5.55!MBD2;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.78!FOSL1;;chr15:96874012..96874042,+!p2@NR2F2!0.66!36.89!NR2F2;;chr12:80084279..80084293,-!p8@PAWR!0.66!6.45!PAWR;;chr10:119302232..119302265,+!p1@EMX2!0.66!3.58!EMX2;;chr5:321810..321877,+!p1@AHRR!0.65!12.54!AHRR;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.47!SOX9;;chr9:4300050..4300118,-!p1@GLIS3!0.64!25.79!GLIS3;;chr3:128206762..128206781,-!p2@GATA2!0.64!24.18!GATA2;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.91!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.64!13.97!BRCA1;;chr6:85474299..85474324,-!p1@TBX18!0.64!6.63!TBX18;;chr9:99180597..99180614,-!p3@ZNF367!0.64!3.94!ZNF367;;chr5:92918956..92918969,+!p4@NR2F1!0.64!3.76!NR2F1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.49!NCOA7;;chr19:13134457..13134462,+!p5@NFIX!0.63!6.45!NFIX;;chr15:96869206..96869220,+!p21@NR2F2!0.63!3.22!NR2F2;;chr9:4299552..4299598,-!p5@GLIS3!0.62!5.91!GLIS3;;chr3:42695180..42695201,+!p2@ZBTB47!0.61!3.04!ZBTB47;;chr12:54393880..54393962,+!p1@HOXC9!0.61!3.04!HOXC9;;chr5:92918894..92918912,+!p2@NR2F1!0.60!11.28!NR2F1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.85!SMARCA2;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.66!NR2F2;;chr12:80083544..80083558,-!p13@PAWR!0.60!3.94!PAWR;;chr12:80084303..80084332,-!p1@PAWR!0.59!20.77!PAWR;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.16!GLI2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!0.59!2.87!HOXC8;;chr17:46687935..46687950,-!p3@HOXB7!0.59!2.87!HOXB7;;chr1:6479968..6479986,-!p1@HES2!0.59!2.87!HES2;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.87!MAFK;;chr3:25470062..25470084,+!p4@RARB!0.57!2.69!RARB;;chrY:2803415..2803468,+!p1@ZFY!0.57!2.69!ZFY;;chr17:3571863..3571881,-!p1@TAX1BP3!0.56!236.58!TAX1BP3;;chr12:80084167..80084197,-!p5@PAWR!0.56!7.16!PAWR;;chr9:4299959..4299974,-!p4@GLIS3!0.56!4.66!GLIS3;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.25!NCOR2;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.31!MXD3;;chr17:17726907..17726958,-!p2@SREBF1!0.55!19.52!SREBF1;;chr8:67525473..67525518,-!p1@MYBL1!0.55!6.81!MYBL1;;chr2:74730430..74730451,-!p1@LBX2!0.55!4.66!LBX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.55!3.76!BHLHE41;;chr5:92919100..92919135,+!p3@NR2F1!0.55!3.22!NR2F1;;chr15:96873984..96873999,+!p3@NR2F2!0.54!22.74!NR2F2;;chr6:28321971..28321995,-!p1@ZNF323!0.54!2.51!ZNF323;;chr3:138665969..138665993,-!p2@FOXL2!0.54!2.51!FOXL2;;chr11:47236584..47236679,+!p1@DDB2!0.52!32.77!DDB2;;chr9:4299979..4299996,-!p3@GLIS3!0.52!4.30!GLIS3;;chr19:47922750..47922795,-!p1@MEIS3!0.52!4.30!MEIS3;;chr15:96869222..96869251,+!p18@NR2F2!0.52!2.87!NR2F2;;chr10:8095593..8095625,+!p3@GATA3!0.52!2.87!GATA3;;chr10:119303078..119303169,+!p2@EMX2!0.52!2.33!EMX2;;chr20:55205825..55205847,+!p2@TFAP2C!0.52!2.33!TFAP2C;;chr2:63277948..63277974,+!p1@OTX1!0.52!2.33!OTX1;;chr5:134369879..134369898,-!p2@PITX1!0.52!2.33!PITX1;;chr8:128748308..128748324,+!p2@MYC!0.51!80.95!MYC;;chr3:52001448..52001478,-!p2@PCBP4!0.51!40.83!PCBP4;;chr8:77593474..77593612,+!p1@ZFHX4!0.51!12.00!ZFHX4;;chr19:37096139..37096170,-!p2@ZNF529!0.51!7.70!ZNF529;;chr2:200322654..200322707,-!p2@SATB2!0.51!3.58!SATB2;;chr1:23885981..23886002,-!p1@ID3!0.50!510.22!ID3;;chr17:46126136..46126152,+!p1@NFE2L1!0.50!148.64!NFE2L1;;chr3:168864315..168864339,-!p2@MECOM!0.50!4.12!MECOM;;chr17:46622114..46622138,-!p4@HOXB2!0.50!3.76!HOXB2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.87!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.50!2.33!GLIS1;;chr1:244214577..244214593,+!p1@ZNF238!0.50!2.15!ZNF238;;chr5:139492456..139492489,+!p7@PURA!0.50!2.15!PURA;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.50!2.15!HOXC5;;chr14:38064429..38064486,-!p1@FOXA1!0.50!2.15!FOXA1;;chr3:25469875..25469893,+!p5@RARB!0.50!2.15!RARB;;chr5:138609782..138609826,+!p5@MATR3!0.49!17.73!MATR3;;chr1:35656508..35656584,-!p2@SFPQ!0.49!8.42!SFPQ;;chr6:126240442..126240459,+!p4@NCOA7!0.49!2.87!NCOA7;;chr1:35657108..35657135,-!p5@SFPQ!0.48!4.66!SFPQ;;chr15:96874145..96874166,+!p7@NR2F2!0.48!4.66!NR2F2;;chr6:21597514..21597578,+!p4@SOX4!0.48!3.94!SOX4;;chr16:29818199..29818216,+!p11@MAZ!0.48!3.76!MAZ;;chr6:126240356..126240379,+!p7@NCOA7!0.48!2.69!NCOA7;;chr3:37217736..37217753,-!p2@LRRFIP2!0.47!10.57!LRRFIP2;;chr7:19157043..19157088,-!p2@TWIST1!0.47!6.09!TWIST1;;chr7:149470540..149470596,-!p2@ZNF467!0.47!2.87!ZNF467;;chr17:42295897..42295953,-!p10@UBTF!0.47!2.87!UBTF;;chr12:80083689..80083706,-!p16@PAWR!0.47!2.33!PAWR;;chr11:65688877..65688891,+!p13@DRAP1!0.47!1.97!DRAP1;;chr12:10870927..10870966,-!p5@CSDA!0.47!1.97!CSDA;;chr12:54332652..54332671,+!p2@HOXC13!0.47!1.97!HOXC13;;chr12:54332675..54332686,+!p4@HOXC13!0.47!1.97!HOXC13;;chr12:80084120..80084136,-!p15@PAWR!0.47!1.97!PAWR;;chr6:10415484..10415508,-!p3@TFAP2A!0.47!1.97!TFAP2A;;chr15:96869394..96869405,+!p25@NR2F2!0.47!1.97!NR2F2;;chr2:73144617..73144654,+!p1@EMX1!0.47!1.97!EMX1;;chr19:59084647..59084721,-!p1@MZF1!0.46!12.36!MZF1;;chr21:27107465..27107557,+!p3@GABPA!0.46!8.95!GABPA;;chr9:99180617..99180658,-!p1@ZNF367!0.46!5.01!ZNF367;;chr9:4300016..4300039,-!p2@GLIS3!0.46!3.76!GLIS3;;chr12:80084137..80084165,-!p10@PAWR!0.46!2.69!PAWR;;chr17:61920023..61920110,-!p1@SMARCD2!0.45!36.00!SMARCD2;;chr6:21597765..21597779,+!p2@SOX4!0.45!20.24!SOX4;;chr8:37553261..37553282,+!p2@ZNF703!0.45!19.16!ZNF703;;chr20:32274179..32274213,-!p1@E2F1!0.45!16.48!E2F1;;chr19:36706055..36706074,+!p3@ZNF146!0.45!11.46!ZNF146;;chr1:41174988..41175047,+!p4@NFYC!0.45!6.09!NFYC;;chr11:65430554..65430579,-!p3@RELA!0.45!5.91!RELA;;chr1:23886132..23886156,-!p2@ID3!0.45!2.15!ID3;;chr2:176994408..176994492,+!p1@HOXD8!0.45!1.79!HOXD8;;chr12:124873824..124873833,-!p19@NCOR2!0.45!1.79!NCOR2;;chr13:100623375..100623425,-!p1@ZIC5!0.45!1.79!ZIC5;;chr13:37494275..37494304,-!p2@SMAD9!0.45!1.79!SMAD9;;chr19:13106214..13106382,+!p1@NFIX!0.44!57.49!NFIX;;chr19:53193731..53193767,-!p1@ZNF83!0.44!21.85!ZNF83;;chr12:3068544..3068597,+!p1@TEAD4!0.44!14.51!TEAD4;;chr12:26277956..26277980,-!p1@BHLHE41!0.44!8.42!BHLHE41;;chr19:37997812..37997866,+!p1@ZNF793!0.44!3.58!ZNF793;;chr7:113726357..113726443,+!p1@FOXP2!0.44!3.58!FOXP2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.57!TAL1;;chr6:35310395..35310410,+!p2@PPARD!0.43!8.95!PPARD;;chr17:41322208..41322250,-!p3@BRCA1!0.43!6.45!BRCA1;;chrX:76937934..76937974,-!p3@ATRX!0.43!3.04!ATRX;;chr11:65686776..65686787,+!p9@DRAP1!0.43!2.15!DRAP1;;chr5:92919068..92919082,+!p5@NR2F1!0.43!2.15!NR2F1;;chr19:3366570..3366619,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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10854-111F8 | |id=FF:10854-111F8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102424 | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13070 | |||
|library_id_phase_based=2:CNhs13070 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10854 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10854 | |||
|name=mesothelioma cell line:Mero-83 | |name=mesothelioma cell line:Mero-83 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13070,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13070,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=97 | |rna_weight_ug=97 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100106 | |sample_cell_catalog=9100106 | ||
|sample_cell_line=Mero-83 | |sample_cell_line=Mero-83 | ||
Line 84: | Line 100: | ||
|top_motifs=POU1F1:1.83062969111;FOX{I1,J2}:1.68096674936;AIRE:1.55462489335;PAX4:1.24207283213;ARID5B:1.20536633613;ZNF384:1.13823183175;NR3C1:1.05753973581;EVI1:1.00855879361;RXR{A,B,G}:0.974865003627;HSF1,2:0.965938800105;TEAD1:0.951258190261;bHLH_family:0.951218505334;LMO2:0.936216453307;STAT5{A,B}:0.934956368302;HOX{A5,B5}:0.886478070453;UFEwm:0.873509299177;TP53:0.852893172856;NRF1:0.846302050908;GATA4:0.824255614248;ONECUT1,2:0.770023626455;HOXA9_MEIS1:0.747486509925;ELK1,4_GABP{A,B1}:0.738675079833;PPARG:0.706999162341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.675486872438;NKX6-1,2:0.667167456715;ZIC1..3:0.622421681772;RXRA_VDR{dimer}:0.611116393749;FOXQ1:0.601678391448;NKX2-2,8:0.588538377256;ZNF143:0.567521058211;MYB:0.554904818908;TFDP1:0.530654150344;KLF4:0.527640035607;E2F1..5:0.517399350817;ADNP_IRX_SIX_ZHX:0.485577931664;CDX1,2,4:0.479353149793;PITX1..3:0.474994525178;PAX8:0.473658953246;ZBTB16:0.46526948967;LHX3,4:0.458965873981;IKZF1:0.455962544708;RFX1:0.433843009195;GZF1:0.432905228349;NFE2L1:0.424960280269;FOXD3:0.420379714067;GTF2A1,2:0.414009465845;PRRX1,2:0.389075425382;BREu{core}:0.370315618464;POU3F1..4:0.361571619839;TEF:0.298295302821;ZBTB6:0.290772410999;ZFP161:0.290424358814;TFAP2B:0.24705052953;NKX2-1,4:0.246704147729;MYOD1:0.245272488641;FOXM1:0.238375980432;HMX1:0.231100442032;BACH2:0.174929358708;PAX1,9:0.163035582473;EP300:0.160176484366;PAX6:0.157512624086;ALX4:0.150683515774;NKX3-1:0.150431242364;HIF1A:0.143699664036;NR6A1:0.136676906526;LEF1_TCF7_TCF7L1,2:0.127907170604;TOPORS:0.124891752834;GTF2I:0.114377341639;MYBL2:0.11343130383;TLX1..3_NFIC{dimer}:0.10056678921;HMGA1,2:0.0995488628706;CRX:0.0826072232837;HNF4A_NR2F1,2:0.0825859804075;FOXN1:0.0685773897326;YY1:0.0581593517751;AR:0.0426453482525;GFI1B:0.0275488304387;FOS_FOS{B,L1}_JUN{B,D}:0.0262151852754;EN1,2:0.0216773643311;RBPJ:0.0192187001128;FOXA2:0.0170310755101;MZF1:0.0163605175762;NFIX:0.0139548337489;PAX5:0.0128929990472;GFI1:0.00617349409984;TFCP2:0.00389683387297;ATF6:-0.00265940336788;TFAP2{A,C}:-0.00603299211014;OCT4_SOX2{dimer}:-0.0233703882061;PRDM1:-0.0240079090138;NR1H4:-0.0455396281941;IKZF2:-0.0624016575478;NFY{A,B,C}:-0.0669385438698;HOX{A4,D4}:-0.0739251109284;NFE2:-0.0754649668812;ZNF148:-0.0825185916598;FOXP1:-0.0848352261255;FOXL1:-0.0890391249871;HBP1_HMGB_SSRP1_UBTF:-0.0895757792385;RREB1:-0.0936273432741;HES1:-0.112052016576;MED-1{core}:-0.116191093353;HLF:-0.116563383491;BPTF:-0.13919772536;SOX2:-0.142316913303;AHR_ARNT_ARNT2:-0.151976451679;FOSL2:-0.15874513704;XBP1:-0.161910497574;ESR1:-0.177785309093;MAZ:-0.179868200778;HAND1,2:-0.182481604412;CDC5L:-0.204342288968;SNAI1..3:-0.207538014326;HIC1:-0.211705991424;STAT1,3:-0.21305998685;CUX2:-0.225902650119;MTE{core}:-0.23879530464;EGR1..3:-0.268554065346;IRF1,2:-0.271875345247;DMAP1_NCOR{1,2}_SMARC:-0.28233843503;SRF:-0.284950077772;MAFB:-0.28847698326;SPZ1:-0.305064558634;FOXP3:-0.308011597183;TBP:-0.314532626186;ELF1,2,4:-0.315703900544;NFE2L2:-0.322849346247;NANOG:-0.330486276268;VSX1,2:-0.343776163005;NFKB1_REL_RELA:-0.346606470164;NKX3-2:-0.346826836082;NFATC1..3:-0.347458331639;T:-0.366618049528;SOX17:-0.382952236479;ATF5_CREB3:-0.392195753334;IRF7:-0.397549389771;SPIB:-0.401943805828;GCM1,2:-0.404726518178;HNF1A:-0.407235391372;ALX1:-0.415398052618;ZEB1:-0.430934150008;SOX{8,9,10}:-0.432071647326;MYFfamily:-0.43732058547;ESRRA:-0.439074982327;PDX1:-0.442235514805;SMAD1..7,9:-0.445469795776;RFX2..5_RFXANK_RFXAP:-0.446104439218;EBF1:-0.463085820077;TAL1_TCF{3,4,12}:-0.468173664155;CEBPA,B_DDIT3:-0.483327205998;MTF1:-0.485350358298;TBX4,5:-0.485912430177;POU2F1..3:-0.495189737086;NKX2-3_NKX2-5:-0.50173098202;PATZ1:-0.504438593719;PAX3,7:-0.506748159084;RUNX1..3:-0.508546394209;STAT2,4,6:-0.52016282715;POU5F1:-0.554414977399;NFIL3:-0.559032456803;MEF2{A,B,C,D}:-0.565014762357;ZNF423:-0.574599749738;REST:-0.594343863405;SPI1:-0.595597301473;ETS1,2:-0.627473078388;SP1:-0.628300911059;GATA6:-0.629182116489;XCPE1{core}:-0.643186670262;ATF2:-0.654451151722;SREBF1,2:-0.666626589473;DBP:-0.668252199932;NHLH1,2:-0.668256610419;FOXO1,3,4:-0.671336812149;NR5A1,2:-0.692391160175;ATF4:-0.753129787029;FOX{D1,D2}:-0.774491589597;PAX2:-0.774996239425;PBX1:-0.87442811365;TLX2:-0.889399099675;POU6F1:-0.903977867269;GLI1..3:-0.935887204996;CREB1:-0.957245201418;ZNF238:-0.960048209499;FOX{F1,F2,J1}:-1.03888793586;NANOG{mouse}:-1.04650740787;TFAP4:-1.09068576497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16431119196;HOX{A6,A7,B6,B7}:-1.19358350973;SOX5:-1.19744530978;TGIF1:-1.21293147274;RORA:-1.24583515816;JUN:-1.29000820698 | |top_motifs=POU1F1:1.83062969111;FOX{I1,J2}:1.68096674936;AIRE:1.55462489335;PAX4:1.24207283213;ARID5B:1.20536633613;ZNF384:1.13823183175;NR3C1:1.05753973581;EVI1:1.00855879361;RXR{A,B,G}:0.974865003627;HSF1,2:0.965938800105;TEAD1:0.951258190261;bHLH_family:0.951218505334;LMO2:0.936216453307;STAT5{A,B}:0.934956368302;HOX{A5,B5}:0.886478070453;UFEwm:0.873509299177;TP53:0.852893172856;NRF1:0.846302050908;GATA4:0.824255614248;ONECUT1,2:0.770023626455;HOXA9_MEIS1:0.747486509925;ELK1,4_GABP{A,B1}:0.738675079833;PPARG:0.706999162341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.675486872438;NKX6-1,2:0.667167456715;ZIC1..3:0.622421681772;RXRA_VDR{dimer}:0.611116393749;FOXQ1:0.601678391448;NKX2-2,8:0.588538377256;ZNF143:0.567521058211;MYB:0.554904818908;TFDP1:0.530654150344;KLF4:0.527640035607;E2F1..5:0.517399350817;ADNP_IRX_SIX_ZHX:0.485577931664;CDX1,2,4:0.479353149793;PITX1..3:0.474994525178;PAX8:0.473658953246;ZBTB16:0.46526948967;LHX3,4:0.458965873981;IKZF1:0.455962544708;RFX1:0.433843009195;GZF1:0.432905228349;NFE2L1:0.424960280269;FOXD3:0.420379714067;GTF2A1,2:0.414009465845;PRRX1,2:0.389075425382;BREu{core}:0.370315618464;POU3F1..4:0.361571619839;TEF:0.298295302821;ZBTB6:0.290772410999;ZFP161:0.290424358814;TFAP2B:0.24705052953;NKX2-1,4:0.246704147729;MYOD1:0.245272488641;FOXM1:0.238375980432;HMX1:0.231100442032;BACH2:0.174929358708;PAX1,9:0.163035582473;EP300:0.160176484366;PAX6:0.157512624086;ALX4:0.150683515774;NKX3-1:0.150431242364;HIF1A:0.143699664036;NR6A1:0.136676906526;LEF1_TCF7_TCF7L1,2:0.127907170604;TOPORS:0.124891752834;GTF2I:0.114377341639;MYBL2:0.11343130383;TLX1..3_NFIC{dimer}:0.10056678921;HMGA1,2:0.0995488628706;CRX:0.0826072232837;HNF4A_NR2F1,2:0.0825859804075;FOXN1:0.0685773897326;YY1:0.0581593517751;AR:0.0426453482525;GFI1B:0.0275488304387;FOS_FOS{B,L1}_JUN{B,D}:0.0262151852754;EN1,2:0.0216773643311;RBPJ:0.0192187001128;FOXA2:0.0170310755101;MZF1:0.0163605175762;NFIX:0.0139548337489;PAX5:0.0128929990472;GFI1:0.00617349409984;TFCP2:0.00389683387297;ATF6:-0.00265940336788;TFAP2{A,C}:-0.00603299211014;OCT4_SOX2{dimer}:-0.0233703882061;PRDM1:-0.0240079090138;NR1H4:-0.0455396281941;IKZF2:-0.0624016575478;NFY{A,B,C}:-0.0669385438698;HOX{A4,D4}:-0.0739251109284;NFE2:-0.0754649668812;ZNF148:-0.0825185916598;FOXP1:-0.0848352261255;FOXL1:-0.0890391249871;HBP1_HMGB_SSRP1_UBTF:-0.0895757792385;RREB1:-0.0936273432741;HES1:-0.112052016576;MED-1{core}:-0.116191093353;HLF:-0.116563383491;BPTF:-0.13919772536;SOX2:-0.142316913303;AHR_ARNT_ARNT2:-0.151976451679;FOSL2:-0.15874513704;XBP1:-0.161910497574;ESR1:-0.177785309093;MAZ:-0.179868200778;HAND1,2:-0.182481604412;CDC5L:-0.204342288968;SNAI1..3:-0.207538014326;HIC1:-0.211705991424;STAT1,3:-0.21305998685;CUX2:-0.225902650119;MTE{core}:-0.23879530464;EGR1..3:-0.268554065346;IRF1,2:-0.271875345247;DMAP1_NCOR{1,2}_SMARC:-0.28233843503;SRF:-0.284950077772;MAFB:-0.28847698326;SPZ1:-0.305064558634;FOXP3:-0.308011597183;TBP:-0.314532626186;ELF1,2,4:-0.315703900544;NFE2L2:-0.322849346247;NANOG:-0.330486276268;VSX1,2:-0.343776163005;NFKB1_REL_RELA:-0.346606470164;NKX3-2:-0.346826836082;NFATC1..3:-0.347458331639;T:-0.366618049528;SOX17:-0.382952236479;ATF5_CREB3:-0.392195753334;IRF7:-0.397549389771;SPIB:-0.401943805828;GCM1,2:-0.404726518178;HNF1A:-0.407235391372;ALX1:-0.415398052618;ZEB1:-0.430934150008;SOX{8,9,10}:-0.432071647326;MYFfamily:-0.43732058547;ESRRA:-0.439074982327;PDX1:-0.442235514805;SMAD1..7,9:-0.445469795776;RFX2..5_RFXANK_RFXAP:-0.446104439218;EBF1:-0.463085820077;TAL1_TCF{3,4,12}:-0.468173664155;CEBPA,B_DDIT3:-0.483327205998;MTF1:-0.485350358298;TBX4,5:-0.485912430177;POU2F1..3:-0.495189737086;NKX2-3_NKX2-5:-0.50173098202;PATZ1:-0.504438593719;PAX3,7:-0.506748159084;RUNX1..3:-0.508546394209;STAT2,4,6:-0.52016282715;POU5F1:-0.554414977399;NFIL3:-0.559032456803;MEF2{A,B,C,D}:-0.565014762357;ZNF423:-0.574599749738;REST:-0.594343863405;SPI1:-0.595597301473;ETS1,2:-0.627473078388;SP1:-0.628300911059;GATA6:-0.629182116489;XCPE1{core}:-0.643186670262;ATF2:-0.654451151722;SREBF1,2:-0.666626589473;DBP:-0.668252199932;NHLH1,2:-0.668256610419;FOXO1,3,4:-0.671336812149;NR5A1,2:-0.692391160175;ATF4:-0.753129787029;FOX{D1,D2}:-0.774491589597;PAX2:-0.774996239425;PBX1:-0.87442811365;TLX2:-0.889399099675;POU6F1:-0.903977867269;GLI1..3:-0.935887204996;CREB1:-0.957245201418;ZNF238:-0.960048209499;FOX{F1,F2,J1}:-1.03888793586;NANOG{mouse}:-1.04650740787;TFAP4:-1.09068576497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16431119196;HOX{A6,A7,B6,B7}:-1.19358350973;SOX5:-1.19744530978;TGIF1:-1.21293147274;RORA:-1.24583515816;JUN:-1.29000820698 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10854-111F8;search_select_hide=table117:FF:10854-111F8 | |||
}} | }} |
Latest revision as of 15:10, 3 June 2020
Name: | mesothelioma cell line:Mero-83 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13070 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13070
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13070
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.899 |
10 | 10 | 0.872 |
100 | 100 | 0.093 |
101 | 101 | 0.377 |
102 | 102 | 0.748 |
103 | 103 | 0.0866 |
104 | 104 | 0.458 |
105 | 105 | 0.00803 |
106 | 106 | 0.0013 |
107 | 107 | 0.104 |
108 | 108 | 0.743 |
109 | 109 | 0.455 |
11 | 11 | 0.392 |
110 | 110 | 0.945 |
111 | 111 | 0.776 |
112 | 112 | 0.428 |
113 | 113 | 0.0149 |
114 | 114 | 0.609 |
115 | 115 | 0.744 |
116 | 116 | 0.904 |
117 | 117 | 0.754 |
118 | 118 | 0.0984 |
119 | 119 | 0.648 |
12 | 12 | 0.1 |
120 | 120 | 0.0463 |
121 | 121 | 0.327 |
122 | 122 | 0.5 |
123 | 123 | 0.181 |
124 | 124 | 0.0226 |
125 | 125 | 0.929 |
126 | 126 | 0.139 |
127 | 127 | 0.677 |
128 | 128 | 1.29755e-4 |
129 | 129 | 0.255 |
13 | 13 | 0.95 |
130 | 130 | 0.996 |
131 | 131 | 0.531 |
132 | 132 | 0.334 |
133 | 133 | 1 |
134 | 134 | 0.332 |
135 | 135 | 0.0174 |
136 | 136 | 0.308 |
137 | 137 | 0.324 |
138 | 138 | 0.469 |
139 | 139 | 0.709 |
14 | 14 | 0.218 |
140 | 140 | 0.997 |
141 | 141 | 0.142 |
142 | 142 | 0.164 |
143 | 143 | 0.609 |
144 | 144 | 0.656 |
145 | 145 | 0.732 |
146 | 146 | 0.493 |
147 | 147 | 0.624 |
148 | 148 | 0.145 |
149 | 149 | 0.903 |
15 | 15 | 0.853 |
150 | 150 | 0.712 |
151 | 151 | 0.593 |
152 | 152 | 0.0669 |
153 | 153 | 0.652 |
154 | 154 | 0.885 |
155 | 155 | 0.15 |
156 | 156 | 0.462 |
157 | 157 | 0.719 |
158 | 158 | 0.0418 |
159 | 159 | 0.597 |
16 | 16 | 0.836 |
160 | 160 | 0.94 |
161 | 161 | 0.391 |
162 | 162 | 0.198 |
163 | 163 | 0.994 |
164 | 164 | 0.0134 |
165 | 165 | 0.573 |
166 | 166 | 0.477 |
167 | 167 | 0.188 |
168 | 168 | 0.707 |
169 | 169 | 0.254 |
17 | 17 | 0.894 |
18 | 18 | 0.756 |
19 | 19 | 0.506 |
2 | 2 | 0.294 |
20 | 20 | 0.304 |
21 | 21 | 0.00852 |
22 | 22 | 0.0702 |
23 | 23 | 0.281 |
24 | 24 | 0.177 |
25 | 25 | 0.538 |
26 | 26 | 0.427 |
27 | 27 | 0.741 |
28 | 28 | 0.977 |
29 | 29 | 0.411 |
3 | 3 | 0.827 |
30 | 30 | 0.46 |
31 | 31 | 0.914 |
32 | 32 | 0.365 |
33 | 33 | 0.893 |
34 | 34 | 0.143 |
35 | 35 | 0.968 |
36 | 36 | 0.67 |
37 | 37 | 0.861 |
38 | 38 | 0.894 |
39 | 39 | 0.659 |
4 | 4 | 0.684 |
40 | 40 | 0.764 |
41 | 41 | 0.0446 |
42 | 42 | 0.549 |
43 | 43 | 0.0682 |
44 | 44 | 0.796 |
45 | 45 | 0.242 |
46 | 46 | 0.872 |
47 | 47 | 0.943 |
48 | 48 | 0.663 |
49 | 49 | 0.0927 |
5 | 5 | 0.688 |
50 | 50 | 0.861 |
51 | 51 | 0.802 |
52 | 52 | 0.0345 |
53 | 53 | 0.375 |
54 | 54 | 0.725 |
55 | 55 | 0.786 |
56 | 56 | 0.81 |
57 | 57 | 0.296 |
58 | 58 | 0.275 |
59 | 59 | 0.133 |
6 | 6 | 0.968 |
60 | 60 | 0.0241 |
61 | 61 | 0.815 |
62 | 62 | 0.736 |
63 | 63 | 0.772 |
64 | 64 | 0.266 |
65 | 65 | 0.473 |
66 | 66 | 0.11 |
67 | 67 | 0.984 |
68 | 68 | 0.878 |
69 | 69 | 0.335 |
7 | 7 | 0.315 |
70 | 70 | 0.904 |
71 | 71 | 0.265 |
72 | 72 | 0.155 |
73 | 73 | 0.266 |
74 | 74 | 0.993 |
75 | 75 | 0.551 |
76 | 76 | 0.466 |
77 | 77 | 0.47 |
78 | 78 | 0.601 |
79 | 79 | 0.571 |
8 | 8 | 0.59 |
80 | 80 | 0.0664 |
81 | 81 | 0.729 |
82 | 82 | 0.752 |
83 | 83 | 0.642 |
84 | 84 | 0.105 |
85 | 85 | 0.0432 |
86 | 86 | 0.493 |
87 | 87 | 0.925 |
88 | 88 | 0.728 |
89 | 89 | 0.911 |
9 | 9 | 0.117 |
90 | 90 | 0.126 |
91 | 91 | 0.49 |
92 | 92 | 0.00888 |
93 | 93 | 0.692 |
94 | 94 | 0.65 |
95 | 95 | 0.659 |
96 | 96 | 0.854 |
97 | 97 | 0.63 |
98 | 98 | 0.62 |
99 | 99 | 0.14 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13070
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)