FF:11217-116B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004820 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004820 | |||
|accession_numbers=CAGE;DRX008360;DRR009232;DRZ000657;DRZ002042;DRZ012007;DRZ013392 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037186;DRR041552;DRZ007194 | |||
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000096 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.56!39.41!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.50!40.39!SOX18;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.99!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.41!33.55!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.25!16.94!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.20!14.98!HEYL;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.96!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.16!41.69!TBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!65.15!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!1.09!36.81!TWIST2;;chr17:6926362..6926377,+!p1@BCL6B!1.09!11.40!BCL6B;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.06!10.42!HOXC5;;chr11:65686802..65686818,+!p6@DRAP1!1.04!17.59!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.45!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.01!9.12!ERG;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.76!OSR1;;chr17:59477275..59477286,+!p3@TBX2!0.99!11.73!TBX2;;chr12:54402745..54402788,+!p1@HOXC8!0.99!8.79!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.47!HOXC9;;chr6:34204921..34204939,+!p3@HMGA1!0.97!258.31!HMGA1;;chr8:49833978..49833996,-!p1@SNAI2!0.97!174.92!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.20!TWIST1;;chr11:65667884..65667895,-!p2@FOSL1!0.94!31.27!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!0.93!33.23!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.03!TWIST2;;chr12:54380404..54380433,+!p3@HOXC10!0.93!7.49!HOXC10;;chr5:2751762..2751784,-!p1@IRX2!0.93!7.49!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.49!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.36!TBX18;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.82!PPARG;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.51!HOXA9;;chr2:102091566..102091581,-!p1@RFX8!0.88!6.51!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.88!6.51!HAND2;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.84!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.86!6.19!EN1;;chr14:61116183..61116208,-!p1@SIX1!0.84!24.10!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.61!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.51!TCF4;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.54!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.82!5.54!RFX8;;chr12:66218598..66218645,+!p2@HMGA2!0.81!27.36!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.81!9.77!TBX2;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.21!HOXD8;;chr1:212873267..212873332,-!p1@BATF3!0.77!6.84!BATF3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.89!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.77!4.89!HOXA9;;chr11:65687362..65687436,+!p3@DRAP1!0.76!23.78!DRAP1;;chr4:4861385..4861398,+!p1@MSX1!0.76!15.31!MSX1;;chr15:83953397..83953425,-!p1@BNC1!0.76!5.54!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.76!5.21!SHOX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.74!4.89!GLIS1;;chr17:1958388..1958404,+!p1@HIC1!0.72!30.62!HIC1;;chr1:170632762..170632786,+!p13@PRRX1!0.72!4.23!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.23!SOX7;;chr6:31126291..31126399,+!p1@TCF19!0.69!42.35!TCF19;;chr8:55370487..55370503,+!p1@SOX17!0.69!3.91!SOX17;;chr14:62162285..62162296,+!p3@HIF1A!0.68!22.48!HIF1A;;chr3:12329358..12329393,+!p3@PPARG!0.68!10.42!PPARG;;chr15:57511609..57511651,+!p2@TCF12!0.68!6.84!TCF12;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.41!IFI16;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.51!CREB3L1;;chr19:45260775..45260838,+!p5@BCL3!0.66!4.89!BCL3;;chr17:59477403..59477414,+!p4@TBX2!0.66!3.58!TBX2;;chr1:158979872..158979898,+!p3@IFI16!0.64!11.73!IFI16;;chr17:1959369..1959388,+!p2@HIC1!0.64!10.10!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.17!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.64!5.54!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.64!4.56!DRAP1;;chr20:50179368..50179392,-!p2@NFATC2!0.64!4.56!NFATC2;;chr17:46622070..46622109,-!p1@HOXB2!0.63!8.14!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.63!3.91!HOXB2;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.26!HIF3A;;chr1:44513995..44514031,+!p1@KLF17!0.63!3.26!KLF17;;chr12:54379029..54379057,+!p2@HOXC10!0.63!3.26!HOXC10;;chr5:92918919..92918942,+!p1@NR2F1!0.62!16.61!NR2F1;;chr16:86600426..86600441,+!p1@FOXC2!0.62!8.79!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.56!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.61!4.56!FOXF2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!95.11!FOSL1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.71!WDHD1;;chr12:54394059..54394088,+!p3@HOXC9!0.59!2.93!HOXC9;;chr7:15726243..15726293,-!p2@MEOX2!0.59!2.93!MEOX2;;chr1:170632115..170632136,+!p9@PRRX1!0.59!2.93!PRRX1;;chr6:85473156..85473210,-!p2@TBX18!0.58!3.58!TBX18;;chr14:62162258..62162269,+!p2@HIF1A!0.57!32.25!HIF1A;;chr12:7079780..7079791,-!p2@PHB2!0.57!17.26!PHB2;;chr7:44143978..44143989,+!p2@AEBP1!0.57!5.54!AEBP1;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.56!HOXB2;;chr7:14029283..14029311,-!p1@ETV1!0.56!17.26!ETV1;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.40!BRCA1;;chr19:45261550..45261641,+!p6@BCL3!0.56!4.89!BCL3;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.26!DRAP1;;chr12:54366975..54367001,+!p1@HOXC11!0.56!2.61!HOXC11;;chr12:54380112..54380126,+!p5@HOXC10!0.56!2.61!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.56!2.61!HOXC8;;chr22:19748231..19748317,+!p1@TBX1!0.56!2.61!TBX1;;chr2:45236540..45236577,-!p1@SIX2!0.56!2.61!SIX2;;chr2:45236579..45236596,-!p2@SIX2!0.56!2.61!SIX2;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.61!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.56!2.61!ZNF732;;chr17:46622440..46622477,-!p5@HOXB2!0.55!2.93!HOXB2;;chr2:145275162..145275202,-!p2@ZEB2!0.54!18.24!ZEB2;;chr12:96588368..96588394,+!p3@ELK3!0.54!7.82!ELK3;;chr8:72756667..72756736,-!p2@MSC!0.54!4.23!MSC;;chr6:34204672..34204692,+!p1@HMGA1!0.53!344.95!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.61!DRAP1;;chr1:158979851..158979865,+!p5@IFI16!0.53!6.19!IFI16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.93!ZNF438;;chr7:44143925..44143970,+!p1@AEBP1!0.52!67.75!AEBP1;;chr20:42295713..42295738,+!p2@MYBL2!0.52!17.26!MYBL2;;chr11:6947720..6947812,+!p1@ZNF215!0.52!3.26!ZNF215;;chr12:54378923..54378966,+!p1@HOXC10!0.52!2.28!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.28!HOXC6;;chr7:27213893..27213954,-!p1@HOXA10!0.52!2.28!HOXA10;;chr2:102091478..102091490,-!p3@RFX8!0.52!2.28!RFX8;;chr1:170632439..170632465,+!p11@PRRX1!0.52!2.28!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.52!2.28!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.52!2.28!PRRX1;;chr9:124991204..124991246,-!p1@LHX6!0.52!2.28!LHX6;;chr17:47492252..47492265,-!p2@PHB!0.51!11.40!PHB;;chr19:22817119..22817145,+!p1@ZNF492!0.51!4.23!ZNF492;;chr11:46299186..46299195,+!p3@CREB3L1!0.51!2.61!CREB3L1;;chr17:41623692..41623715,-!p1@ETV4!0.50!11.73!ETV4;;chr17:46622205..46622218,-!p3@HOXB2!0.50!2.61!HOXB2;;chr8:72756637..72756664,-!p3@MSC!0.50!2.61!MSC;;chr8:128748308..128748324,+!p2@MYC!0.49!77.20!MYC;;chr12:96588219..96588263,+!p2@ELK3!0.49!19.87!ELK3;;chr6:45390025..45390076,+!p2@RUNX2!0.49!6.19!RUNX2;;chr12:66218152..66218174,+!p10@HMGA2!0.49!2.28!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.48!32.90!ELK3;;chr4:4291861..4291913,-!p1@LYAR!0.47!61.89!LYAR;;chr12:115121962..115121987,-!p1@TBX3!0.47!21.82!TBX3;;chr2:71127699..71127744,+!p1@VAX2!0.47!4.89!VAX2;;chr2:223163706..223163730,-!p1@PAX3!0.47!1.95!PAX3;;chr4:146404119..146404158,+!p9@SMAD1!0.47!1.95!SMAD1;;chr7:27196267..27196311,-!p1@HOXA7!0.47!1.95!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!0.47!1.95!HOXA11;;chr16:31076332..31076388,-!p3@ZNF668!0.47!1.95!ZNF668;;chr12:54394309..54394336,+!p2@HOXC9!0.47!1.95!HOXC9;;chr12:54402729..54402743,+!p3@HOXC8!0.47!1.95!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.47!1.95!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.47!1.95!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.47!1.95!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.47!1.95!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.47!1.95!FOXS1;;chr1:8938766..8938774,-!p2@ENO1!0.46!178.50!ENO1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.46!28.99!TAX1BP3;;chr5:158526917..158526932,-!p1@EBF1!0.46!5.86!EBF1;;chr17:41622765..41622821,-!p2@ETV4!0.46!3.26!ETV4;;chr14:61116168..61116180,-!p2@SIX1!0.46!2.28!SIX1;;chr16:29819403..29819442,+!p5@MAZ!0.45!20.85!MAZ;;chr11:47279504..47279563,+!p1@NR1H3!0.45!5.21!NR1H3;;chr4:206390..206444,+!p1@ZNF876P!0.45!3.91!ZNF876P;;chr10:96122645..96122675,-!p2@NOC3L!0.44!11.40!NOC3L;;chr11:128392273..128392308,-!p2@ETS1!0.44!10.10!ETS1;;chr5:92918894..92918912,+!p2@NR2F1!0.44!7.49!NR2F1;;chr6:45390002..45390023,+!p6@RUNX2!0.44!3.58!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!0.44!2.93!HMGA2;;chr8:128752734..128752763,+!p13@MYC!0.44!2.28!MYC;;chr2:145275228..145275241,-!p11@ZEB2!0.44!2.28!ZEB2;;chr14:62162224..62162254,+!p1@HIF1A!0.43!357.98!HIF1A;;chr12:96588279..96588299,+!p4@ELK3!0.43!11.08!ELK3;;chr1:45805872..45805900,+!p2@TOE1!0.43!5.21!TOE1;;chr3:12329397..12329433,+!p2@PPARG!0.43!4.89!PPARG;;chr8:72756023..72756055,-!p6@MSC!0.43!2.28!MSC;;chr5:92918956..92918969,+!p4@NR2F1!0.43!1.95!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!0.42!1.63!IRX1;;chr6:85473227..85473243,-!p5@TBX18!0.42!1.63!TBX18;;chr7:14029034..14029087,-!p5@ETV1!0.42!1.63!ETV1;;chr7:15725757..15725828,-!p5@MEOX2!0.42!1.63!MEOX2;;chr2:113994526..113994556,-!p3@PAX8!0.42!1.63!PAX8;;chr3:21792631..21792665,-!p3@ZNF385D!0.42!1.63!ZNF385D;;chr9:16705069..16705086,-!p3@BNC2!0.42!1.63!BNC2;;chr1:119530493..119530572,-!p1@TBX15!0.42!1.63!TBX15;;chr1:170633225..170633230,+!p25@PRRX1!0.42!1.63!PRRX1;;chr10:45496320..45496336,+!p3@ZNF22!0.42!1.63!ZNF22;;chr12:85673977..85674015,+!p1@ALX1!0.42!1.63!ALX1;;chr16:86612320..86612394,+!p1@FOXL1!0.42!1.63!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.42!1.63!HOXB2;;chr6:34204973..34204990,+!p4@HMGA1!0.41!30.62!HMGA1;;chr5:133450365..133450444,+!p1@TCF7!0.41!10.10!TCF7;;chr20:50721803..50721857,-!p2@ZFP64!0.41!2.93!ZFP64;;chr1:221052733..221052749,+!p2@HLX!0.41!2.28!HLX;;chr1:246729483..246729538,-!p2@TFB2M!0.40!21.17!TFB2M;;chr19:20011744..20011770,+!p1@ZNF93!0.40!8.14!ZNF93;;chr17:46621937..46621966,-!p2@HOXB2!0.40!5.54!HOXB2;;chr10:44101902..44101932,+!p2@ZNF485!0.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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.56!39.41!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.50!40.39!SOX18;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.99!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.41!33.55!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.25!16.94!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.20!14.98!HEYL;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.96!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.16!41.69!TBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!65.15!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!1.09!36.81!TWIST2;;chr17:6926362..6926377,+!p1@BCL6B!1.09!11.40!BCL6B;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.06!10.42!HOXC5;;chr11:65686802..65686818,+!p6@DRAP1!1.04!17.59!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.45!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.01!9.12!ERG;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.76!OSR1;;chr17:59477275..59477286,+!p3@TBX2!0.99!11.73!TBX2;;chr12:54402745..54402788,+!p1@HOXC8!0.99!8.79!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.47!HOXC9;;chr6:34204921..34204939,+!p3@HMGA1!0.97!258.31!HMGA1;;chr8:49833978..49833996,-!p1@SNAI2!0.97!174.92!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.20!TWIST1;;chr11:65667884..65667895,-!p2@FOSL1!0.94!31.27!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!0.93!33.23!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.03!TWIST2;;chr12:54380404..54380433,+!p3@HOXC10!0.93!7.49!HOXC10;;chr5:2751762..2751784,-!p1@IRX2!0.93!7.49!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.49!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.36!TBX18;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.82!PPARG;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.51!HOXA9;;chr2:102091566..102091581,-!p1@RFX8!0.88!6.51!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.88!6.51!HAND2;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.84!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.86!6.19!EN1;;chr14:61116183..61116208,-!p1@SIX1!0.84!24.10!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.61!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.51!TCF4;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.54!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.82!5.54!RFX8;;chr12:66218598..66218645,+!p2@HMGA2!0.81!27.36!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.81!9.77!TBX2;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.21!HOXD8;;chr1:212873267..212873332,-!p1@BATF3!0.77!6.84!BATF3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.89!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.77!4.89!HOXA9;;chr11:65687362..65687436,+!p3@DRAP1!0.76!23.78!DRAP1;;chr4:4861385..4861398,+!p1@MSX1!0.76!15.31!MSX1;;chr15:83953397..83953425,-!p1@BNC1!0.76!5.54!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.76!5.21!SHOX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.74!4.89!GLIS1;;chr17:1958388..1958404,+!p1@HIC1!0.72!30.62!HIC1;;chr1:170632762..170632786,+!p13@PRRX1!0.72!4.23!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.23!SOX7;;chr6:31126291..31126399,+!p1@TCF19!0.69!42.35!TCF19;;chr8:55370487..55370503,+!p1@SOX17!0.69!3.91!SOX17;;chr14:62162285..62162296,+!p3@HIF1A!0.68!22.48!HIF1A;;chr3:12329358..12329393,+!p3@PPARG!0.68!10.42!PPARG;;chr15:57511609..57511651,+!p2@TCF12!0.68!6.84!TCF12;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.41!IFI16;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.51!CREB3L1;;chr19:45260775..45260838,+!p5@BCL3!0.66!4.89!BCL3;;chr17:59477403..59477414,+!p4@TBX2!0.66!3.58!TBX2;;chr1:158979872..158979898,+!p3@IFI16!0.64!11.73!IFI16;;chr17:1959369..1959388,+!p2@HIC1!0.64!10.10!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.17!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.64!5.54!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.64!4.56!DRAP1;;chr20:50179368..50179392,-!p2@NFATC2!0.64!4.56!NFATC2;;chr17:46622070..46622109,-!p1@HOXB2!0.63!8.14!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.63!3.91!HOXB2;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.26!HIF3A;;chr1:44513995..44514031,+!p1@KLF17!0.63!3.26!KLF17;;chr12:54379029..54379057,+!p2@HOXC10!0.63!3.26!HOXC10;;chr5:92918919..92918942,+!p1@NR2F1!0.62!16.61!NR2F1;;chr16:86600426..86600441,+!p1@FOXC2!0.62!8.79!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.56!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.61!4.56!FOXF2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!95.11!FOSL1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.71!WDHD1;;chr12:54394059..54394088,+!p3@HOXC9!0.59!2.93!HOXC9;;chr7:15726243..15726293,-!p2@MEOX2!0.59!2.93!MEOX2;;chr1:170632115..170632136,+!p9@PRRX1!0.59!2.93!PRRX1;;chr6:85473156..85473210,-!p2@TBX18!0.58!3.58!TBX18;;chr14:62162258..62162269,+!p2@HIF1A!0.57!32.25!HIF1A;;chr12:7079780..7079791,-!p2@PHB2!0.57!17.26!PHB2;;chr7:44143978..44143989,+!p2@AEBP1!0.57!5.54!AEBP1;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.56!HOXB2;;chr7:14029283..14029311,-!p1@ETV1!0.56!17.26!ETV1;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.40!BRCA1;;chr19:45261550..45261641,+!p6@BCL3!0.56!4.89!BCL3;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.26!DRAP1;;chr12:54366975..54367001,+!p1@HOXC11!0.56!2.61!HOXC11;;chr12:54380112..54380126,+!p5@HOXC10!0.56!2.61!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.56!2.61!HOXC8;;chr22:19748231..19748317,+!p1@TBX1!0.56!2.61!TBX1;;chr2:45236540..45236577,-!p1@SIX2!0.56!2.61!SIX2;;chr2:45236579..45236596,-!p2@SIX2!0.56!2.61!SIX2;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.61!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.56!2.61!ZNF732;;chr17:46622440..46622477,-!p5@HOXB2!0.55!2.93!HOXB2;;chr2:145275162..145275202,-!p2@ZEB2!0.54!18.24!ZEB2;;chr12:96588368..96588394,+!p3@ELK3!0.54!7.82!ELK3;;chr8:72756667..72756736,-!p2@MSC!0.54!4.23!MSC;;chr6:34204672..34204692,+!p1@HMGA1!0.53!344.95!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.61!DRAP1;;chr1:158979851..158979865,+!p5@IFI16!0.53!6.19!IFI16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.93!ZNF438;;chr7:44143925..44143970,+!p1@AEBP1!0.52!67.75!AEBP1;;chr20:42295713..42295738,+!p2@MYBL2!0.52!17.26!MYBL2;;chr11:6947720..6947812,+!p1@ZNF215!0.52!3.26!ZNF215;;chr12:54378923..54378966,+!p1@HOXC10!0.52!2.28!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.28!HOXC6;;chr7:27213893..27213954,-!p1@HOXA10!0.52!2.28!HOXA10;;chr2:102091478..102091490,-!p3@RFX8!0.52!2.28!RFX8;;chr1:170632439..170632465,+!p11@PRRX1!0.52!2.28!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.52!2.28!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.52!2.28!PRRX1;;chr9:124991204..124991246,-!p1@LHX6!0.52!2.28!LHX6;;chr17:47492252..47492265,-!p2@PHB!0.51!11.40!PHB;;chr19:22817119..22817145,+!p1@ZNF492!0.51!4.23!ZNF492;;chr11:46299186..46299195,+!p3@CREB3L1!0.51!2.61!CREB3L1;;chr17:41623692..41623715,-!p1@ETV4!0.50!11.73!ETV4;;chr17:46622205..46622218,-!p3@HOXB2!0.50!2.61!HOXB2;;chr8:72756637..72756664,-!p3@MSC!0.50!2.61!MSC;;chr8:128748308..128748324,+!p2@MYC!0.49!77.20!MYC;;chr12:96588219..96588263,+!p2@ELK3!0.49!19.87!ELK3;;chr6:45390025..45390076,+!p2@RUNX2!0.49!6.19!RUNX2;;chr12:66218152..66218174,+!p10@HMGA2!0.49!2.28!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.48!32.90!ELK3;;chr4:4291861..4291913,-!p1@LYAR!0.47!61.89!LYAR;;chr12:115121962..115121987,-!p1@TBX3!0.47!21.82!TBX3;;chr2:71127699..71127744,+!p1@VAX2!0.47!4.89!VAX2;;chr2:223163706..223163730,-!p1@PAX3!0.47!1.95!PAX3;;chr4:146404119..146404158,+!p9@SMAD1!0.47!1.95!SMAD1;;chr7:27196267..27196311,-!p1@HOXA7!0.47!1.95!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!0.47!1.95!HOXA11;;chr16:31076332..31076388,-!p3@ZNF668!0.47!1.95!ZNF668;;chr12:54394309..54394336,+!p2@HOXC9!0.47!1.95!HOXC9;;chr12:54402729..54402743,+!p3@HOXC8!0.47!1.95!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.47!1.95!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.47!1.95!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.47!1.95!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.47!1.95!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.47!1.95!FOXS1;;chr1:8938766..8938774,-!p2@ENO1!0.46!178.50!ENO1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.46!28.99!TAX1BP3;;chr5:158526917..158526932,-!p1@EBF1!0.46!5.86!EBF1;;chr17:41622765..41622821,-!p2@ETV4!0.46!3.26!ETV4;;chr14:61116168..61116180,-!p2@SIX1!0.46!2.28!SIX1;;chr16:29819403..29819442,+!p5@MAZ!0.45!20.85!MAZ;;chr11:47279504..47279563,+!p1@NR1H3!0.45!5.21!NR1H3;;chr4:206390..206444,+!p1@ZNF876P!0.45!3.91!ZNF876P;;chr10:96122645..96122675,-!p2@NOC3L!0.44!11.40!NOC3L;;chr11:128392273..128392308,-!p2@ETS1!0.44!10.10!ETS1;;chr5:92918894..92918912,+!p2@NR2F1!0.44!7.49!NR2F1;;chr6:45390002..45390023,+!p6@RUNX2!0.44!3.58!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!0.44!2.93!HMGA2;;chr8:128752734..128752763,+!p13@MYC!0.44!2.28!MYC;;chr2:145275228..145275241,-!p11@ZEB2!0.44!2.28!ZEB2;;chr14:62162224..62162254,+!p1@HIF1A!0.43!357.98!HIF1A;;chr12:96588279..96588299,+!p4@ELK3!0.43!11.08!ELK3;;chr1:45805872..45805900,+!p2@TOE1!0.43!5.21!TOE1;;chr3:12329397..12329433,+!p2@PPARG!0.43!4.89!PPARG;;chr8:72756023..72756055,-!p6@MSC!0.43!2.28!MSC;;chr5:92918956..92918969,+!p4@NR2F1!0.43!1.95!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!0.42!1.63!IRX1;;chr6:85473227..85473243,-!p5@TBX18!0.42!1.63!TBX18;;chr7:14029034..14029087,-!p5@ETV1!0.42!1.63!ETV1;;chr7:15725757..15725828,-!p5@MEOX2!0.42!1.63!MEOX2;;chr2:113994526..113994556,-!p3@PAX8!0.42!1.63!PAX8;;chr3:21792631..21792665,-!p3@ZNF385D!0.42!1.63!ZNF385D;;chr9:16705069..16705086,-!p3@BNC2!0.42!1.63!BNC2;;chr1:119530493..119530572,-!p1@TBX15!0.42!1.63!TBX15;;chr1:170633225..170633230,+!p25@PRRX1!0.42!1.63!PRRX1;;chr10:45496320..45496336,+!p3@ZNF22!0.42!1.63!ZNF22;;chr12:85673977..85674015,+!p1@ALX1!0.42!1.63!ALX1;;chr16:86612320..86612394,+!p1@FOXL1!0.42!1.63!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.42!1.63!HOXB2;;chr6:34204973..34204990,+!p4@HMGA1!0.41!30.62!HMGA1;;chr5:133450365..133450444,+!p1@TCF7!0.41!10.10!TCF7;;chr20:50721803..50721857,-!p2@ZFP64!0.41!2.93!ZFP64;;chr1:221052733..221052749,+!p2@HLX!0.41!2.28!HLX;;chr1:246729483..246729538,-!p2@TFB2M!0.40!21.17!TFB2M;;chr19:20011744..20011770,+!p1@ZNF93!0.40!8.14!ZNF93;;chr17:46621937..46621966,-!p2@HOXB2!0.40!5.54!HOXB2;;chr10:44101902..44101932,+!p2@ZNF485!0.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11217-116B2 | |id=FF:11217-116B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000096 | ||
|is_obsolete= | |||
|library_id=CNhs10844 | |||
|library_id_phase_based=2:CNhs10844 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11217 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GCCAAT.11217 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11217 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GCCAAT.11217 | |||
|name=Mesenchymal stem cells - adipose, donor0 | |name=Mesenchymal stem cells - adipose, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10844,LSID700,release009,COMPLETED | |profile_hcage=CNhs10844,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=7515 | |rna_catalog_number=7515 | ||
Line 56: | Line 82: | ||
|rna_tube_id=116B2 | |rna_tube_id=116B2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.34613065816594e-241!GO:0005737;cytoplasm;3.55920035073068e-193!GO:0043231;intracellular membrane-bound organelle;8.16746962410196e-192!GO:0043227;membrane-bound organelle;1.83296157968948e-191!GO:0043226;organelle;4.25259855884588e-190!GO:0043229;intracellular organelle;8.73533545262027e-190!GO:0044422;organelle part;1.60781858802259e-159!GO:0044446;intracellular organelle part;4.08472238772157e-158!GO:0044444;cytoplasmic part;1.44902755768146e-144!GO:0032991;macromolecular complex;1.81693424533675e-113!GO:0030529;ribonucleoprotein complex;1.85216425867937e-100!GO:0044237;cellular metabolic process;1.43691867149143e-86!GO:0044238;primary metabolic process;1.80097301214853e-85!GO:0005739;mitochondrion;3.44795809935263e-81!GO:0043233;organelle lumen;9.10246687671863e-81!GO:0031974;membrane-enclosed lumen;9.10246687671863e-81!GO:0043170;macromolecule metabolic process;5.60578589353842e-78!GO:0044428;nuclear part;5.98890210866671e-78!GO:0005515;protein binding;8.20312730880795e-75!GO:0003723;RNA binding;4.59818559334783e-74!GO:0005634;nucleus;5.06066084898289e-70!GO:0005840;ribosome;9.88776010138549e-61!GO:0006396;RNA processing;2.69087603730641e-58!GO:0043234;protein complex;5.8980346500644e-56!GO:0006412;translation;5.1468191560889e-55!GO:0031090;organelle membrane;9.39428640660414e-55!GO:0044429;mitochondrial part;9.01875292006002e-54!GO:0003735;structural constituent of ribosome;3.39241562872848e-52!GO:0019538;protein metabolic process;3.47759197252601e-51!GO:0016043;cellular component organization and biogenesis;6.00432476932683e-49!GO:0031967;organelle envelope;2.68267828767106e-47!GO:0009058;biosynthetic process;4.05952036932775e-47!GO:0031975;envelope;5.02711809505167e-47!GO:0031981;nuclear lumen;2.73457015340308e-45!GO:0033279;ribosomal subunit;4.31780460836343e-45!GO:0044260;cellular macromolecule metabolic process;4.68596425375788e-45!GO:0044267;cellular protein metabolic process;1.03839166434874e-44!GO:0044249;cellular biosynthetic process;1.6635852666621e-44!GO:0015031;protein transport;2.22756893923529e-44!GO:0033036;macromolecule localization;2.90646755362405e-43!GO:0009059;macromolecule biosynthetic process;4.24568416060013e-43!GO:0005829;cytosol;5.06790196413527e-43!GO:0045184;establishment of protein localization;3.47463810129837e-41!GO:0008104;protein localization;4.46639296948758e-40!GO:0016071;mRNA metabolic process;1.88422538759323e-39!GO:0043283;biopolymer metabolic process;3.44099206495946e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.85791416921557e-39!GO:0008380;RNA splicing;9.02443070024608e-38!GO:0043228;non-membrane-bound organelle;2.85725236491251e-37!GO:0043232;intracellular non-membrane-bound organelle;2.85725236491251e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.63065466358281e-36!GO:0046907;intracellular transport;5.76657312075475e-36!GO:0006397;mRNA processing;2.95034913171063e-35!GO:0010467;gene expression;9.41737561219853e-35!GO:0065003;macromolecular complex assembly;1.58127165564375e-34!GO:0005740;mitochondrial envelope;2.446908830226e-34!GO:0006996;organelle organization and biogenesis;4.90546073993276e-34!GO:0031966;mitochondrial membrane;6.24528792410573e-32!GO:0006259;DNA metabolic process;6.33793954586803e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.13101502023845e-31!GO:0022607;cellular component assembly;9.26616432628215e-31!GO:0006886;intracellular protein transport;1.64887880115821e-30!GO:0019866;organelle inner membrane;5.58516180736025e-30!GO:0005743;mitochondrial inner membrane;3.80693653168775e-28!GO:0007049;cell cycle;1.24083542042135e-27!GO:0005681;spliceosome;1.50371466082819e-27!GO:0005654;nucleoplasm;1.49928670591192e-25!GO:0044445;cytosolic part;1.1980909740984e-24!GO:0000278;mitotic cell cycle;7.3881775834217e-24!GO:0015934;large ribosomal subunit;1.02515761316856e-23!GO:0031980;mitochondrial lumen;2.3601953212077e-23!GO:0005759;mitochondrial matrix;2.3601953212077e-23!GO:0016462;pyrophosphatase activity;3.16554123424299e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.65207599326855e-23!GO:0006119;oxidative phosphorylation;4.79105642753588e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.97745482007871e-23!GO:0051649;establishment of cellular localization;8.83216450375344e-23!GO:0051641;cellular localization;1.04977134088741e-22!GO:0000166;nucleotide binding;1.08634117215545e-22!GO:0012505;endomembrane system;1.15000631308395e-22!GO:0015935;small ribosomal subunit;1.92786849763228e-22!GO:0005730;nucleolus;3.05388428903534e-22!GO:0006457;protein folding;3.56413943210533e-22!GO:0022402;cell cycle process;3.62184478274988e-22!GO:0044455;mitochondrial membrane part;4.74436040433746e-22!GO:0017111;nucleoside-triphosphatase activity;5.69283261746469e-22!GO:0042254;ribosome biogenesis and assembly;5.32625836478961e-21!GO:0005783;endoplasmic reticulum;2.68985919313239e-20!GO:0006974;response to DNA damage stimulus;3.84173003885349e-20!GO:0044451;nucleoplasm part;5.35161530121055e-20!GO:0022618;protein-RNA complex assembly;3.55662990597086e-19!GO:0000087;M phase of mitotic cell cycle;7.71252741265304e-19!GO:0007067;mitosis;1.42795710071838e-18!GO:0005746;mitochondrial respiratory chain;1.47032430742959e-18!GO:0005761;mitochondrial ribosome;1.51588338535587e-18!GO:0000313;organellar ribosome;1.51588338535587e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.10281447942602e-18!GO:0005694;chromosome;2.25159714825735e-18!GO:0003676;nucleic acid binding;3.35327501735076e-18!GO:0051186;cofactor metabolic process;3.68931716461021e-18!GO:0044432;endoplasmic reticulum part;3.8700984431511e-18!GO:0022403;cell cycle phase;5.70655627316391e-18!GO:0048770;pigment granule;9.16894415761686e-18!GO:0042470;melanosome;9.16894415761686e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.45686939816849e-17!GO:0006281;DNA repair;6.13944112929526e-17!GO:0044427;chromosomal part;6.77950268816998e-17!GO:0043285;biopolymer catabolic process;1.12459527771396e-16!GO:0017076;purine nucleotide binding;1.93367268444702e-16!GO:0044265;cellular macromolecule catabolic process;2.18290240624149e-16!GO:0008135;translation factor activity, nucleic acid binding;2.82976665283916e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24065091340644e-16!GO:0016874;ligase activity;4.03588550961368e-16!GO:0032553;ribonucleotide binding;4.08784652706514e-16!GO:0032555;purine ribonucleotide binding;4.08784652706514e-16!GO:0009057;macromolecule catabolic process;7.14576051188011e-16!GO:0051301;cell division;7.88186415019073e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.96677636584487e-16!GO:0003954;NADH dehydrogenase activity;7.96677636584487e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.96677636584487e-16!GO:0006260;DNA replication;1.63410225080481e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.30515204974321e-15!GO:0009719;response to endogenous stimulus;3.31769220091579e-15!GO:0006605;protein targeting;3.44386155418195e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.36103385191087e-15!GO:0044248;cellular catabolic process;5.18743840187766e-15!GO:0000279;M phase;5.74585369623678e-15!GO:0051082;unfolded protein binding;6.23007103753367e-15!GO:0019941;modification-dependent protein catabolic process;7.02067067933999e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.02067067933999e-15!GO:0005794;Golgi apparatus;7.87246713249713e-15!GO:0006512;ubiquitin cycle;8.70329690637773e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.18027554503461e-15!GO:0044257;cellular protein catabolic process;9.68351153507639e-15!GO:0030163;protein catabolic process;1.44990137710693e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76878743359865e-14!GO:0006364;rRNA processing;2.00070932440134e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.37206924507426e-14!GO:0000375;RNA splicing, via transesterification reactions;3.37206924507426e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.37206924507426e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.67741973783724e-14!GO:0042773;ATP synthesis coupled electron transport;3.67741973783724e-14!GO:0006732;coenzyme metabolic process;3.85623266844939e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.70467931703971e-14!GO:0045271;respiratory chain complex I;5.70467931703971e-14!GO:0005747;mitochondrial respiratory chain complex I;5.70467931703971e-14!GO:0016072;rRNA metabolic process;5.7168249371561e-14!GO:0048193;Golgi vesicle transport;1.02589123454952e-13!GO:0005635;nuclear envelope;1.03711537800363e-13!GO:0006399;tRNA metabolic process;1.2444763698344e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.64487870341832e-13!GO:0044453;nuclear membrane part;4.82994217188861e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.55328756834934e-13!GO:0003743;translation initiation factor activity;8.03464545833223e-13!GO:0005524;ATP binding;8.53281762490775e-13!GO:0008134;transcription factor binding;8.62210628484714e-13!GO:0030554;adenyl nucleotide binding;1.11208487470916e-12!GO:0031965;nuclear membrane;1.16541626087028e-12!GO:0032559;adenyl ribonucleotide binding;1.66872468674754e-12!GO:0005789;endoplasmic reticulum membrane;2.55924179853299e-12!GO:0006413;translational initiation;2.76849952257311e-12!GO:0016070;RNA metabolic process;3.35097365138502e-12!GO:0005793;ER-Golgi intermediate compartment;3.4540185527346e-12!GO:0009259;ribonucleotide metabolic process;4.1501222504894e-12!GO:0016887;ATPase activity;5.18690891549895e-12!GO:0000074;regulation of progression through cell cycle;5.49670699715622e-12!GO:0042623;ATPase activity, coupled;5.50926778527035e-12!GO:0051276;chromosome organization and biogenesis;5.9800924367291e-12!GO:0051726;regulation of cell cycle;7.55897186248235e-12!GO:0006163;purine nucleotide metabolic process;1.49908377418486e-11!GO:0009055;electron carrier activity;3.85443037791478e-11!GO:0016192;vesicle-mediated transport;4.61349339055543e-11!GO:0006446;regulation of translational initiation;6.92390107568077e-11!GO:0009150;purine ribonucleotide metabolic process;8.87274711080458e-11!GO:0005643;nuclear pore;8.87274711080458e-11!GO:0043412;biopolymer modification;1.17213954953129e-10!GO:0009260;ribonucleotide biosynthetic process;1.18323653352577e-10!GO:0065002;intracellular protein transport across a membrane;1.47000369921514e-10!GO:0006164;purine nucleotide biosynthetic process;1.4811035157056e-10!GO:0065004;protein-DNA complex assembly;1.94454179482794e-10!GO:0016604;nuclear body;2.43520264761122e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.04536431111618e-10!GO:0006913;nucleocytoplasmic transport;3.94231291976835e-10!GO:0012501;programmed cell death;6.36368967107344e-10!GO:0008565;protein transporter activity;8.55535479515965e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.56856340541433e-10!GO:0004386;helicase activity;9.84228232166007e-10!GO:0051169;nuclear transport;9.91776185569704e-10!GO:0009141;nucleoside triphosphate metabolic process;1.06560467955794e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.08981205020628e-09!GO:0006915;apoptosis;1.15864245897747e-09!GO:0009060;aerobic respiration;1.65894783052826e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28681861524541e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.57291871908303e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.57291871908303e-09!GO:0008026;ATP-dependent helicase activity;2.74818583310272e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.21116611601233e-09!GO:0006461;protein complex assembly;3.24053320111721e-09!GO:0046930;pore complex;3.43792436116477e-09!GO:0006333;chromatin assembly or disassembly;3.59850696992062e-09!GO:0000785;chromatin;3.65886253543668e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73172176847173e-09!GO:0016491;oxidoreductase activity;5.06432481380903e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.22129120481445e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.22129120481445e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.22129120481445e-09!GO:0006464;protein modification process;5.3107884802662e-09!GO:0009056;catabolic process;6.50717592413458e-09!GO:0016779;nucleotidyltransferase activity;6.60002099525499e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.60158189890008e-09!GO:0008219;cell death;7.01703865205945e-09!GO:0016265;death;7.01703865205945e-09!GO:0045333;cellular respiration;7.01778134123488e-09!GO:0043038;amino acid activation;8.22167989199405e-09!GO:0006418;tRNA aminoacylation for protein translation;8.22167989199405e-09!GO:0043039;tRNA aminoacylation;8.22167989199405e-09!GO:0050657;nucleic acid transport;8.23683261901185e-09!GO:0051236;establishment of RNA localization;8.23683261901185e-09!GO:0050658;RNA transport;8.23683261901185e-09!GO:0006323;DNA packaging;8.32138161184354e-09!GO:0009117;nucleotide metabolic process;8.86348763774186e-09!GO:0006403;RNA localization;8.98924105281187e-09!GO:0051188;cofactor biosynthetic process;9.53541709348035e-09!GO:0006334;nucleosome assembly;1.00040735637673e-08!GO:0005788;endoplasmic reticulum lumen;1.01123179905076e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.08994795252671e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.18661421983301e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.18661421983301e-08!GO:0003697;single-stranded DNA binding;1.23624037204305e-08!GO:0043566;structure-specific DNA binding;1.6774792245897e-08!GO:0017038;protein import;2.02116061430112e-08!GO:0007005;mitochondrion organization and biogenesis;2.62734207148113e-08!GO:0015986;ATP synthesis coupled proton transport;2.80726037405803e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.80726037405803e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.82325260458202e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.82325260458202e-08!GO:0003712;transcription cofactor activity;2.85483316800535e-08!GO:0016853;isomerase activity;3.06885568727009e-08!GO:0016607;nuclear speck;3.79820278967917e-08!GO:0046034;ATP metabolic process;4.00807118547394e-08!GO:0008639;small protein conjugating enzyme activity;4.05543493704672e-08!GO:0015630;microtubule cytoskeleton;5.32454761392389e-08!GO:0031497;chromatin assembly;5.80472600615324e-08!GO:0006099;tricarboxylic acid cycle;6.10432098568536e-08!GO:0046356;acetyl-CoA catabolic process;6.10432098568536e-08!GO:0051187;cofactor catabolic process;7.0088249476535e-08!GO:0048523;negative regulation of cellular process;8.63524594162925e-08!GO:0004842;ubiquitin-protein ligase activity;9.11047127146302e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.16825856089374e-07!GO:0000775;chromosome, pericentric region;1.24509115861929e-07!GO:0003924;GTPase activity;1.30333825239112e-07!GO:0019829;cation-transporting ATPase activity;1.30392628339964e-07!GO:0051246;regulation of protein metabolic process;1.48915121594228e-07!GO:0019787;small conjugating protein ligase activity;1.525840805805e-07!GO:0006084;acetyl-CoA metabolic process;1.70203402504659e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74243342150701e-07!GO:0009109;coenzyme catabolic process;1.74243342150701e-07!GO:0016787;hydrolase activity;1.97196273580355e-07!GO:0005819;spindle;1.98046616805715e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.16837884919078e-07!GO:0006261;DNA-dependent DNA replication;2.38851743835224e-07!GO:0043687;post-translational protein modification;2.65067677627167e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.92804378181921e-07!GO:0044431;Golgi apparatus part;3.17083494754977e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.23356928214171e-07!GO:0051028;mRNA transport;4.01253365509562e-07!GO:0006754;ATP biosynthetic process;4.30398384308929e-07!GO:0006753;nucleoside phosphate metabolic process;4.30398384308929e-07!GO:0051329;interphase of mitotic cell cycle;4.41426745520478e-07!GO:0003899;DNA-directed RNA polymerase activity;4.85552562345257e-07!GO:0009108;coenzyme biosynthetic process;6.11824664893629e-07!GO:0030120;vesicle coat;6.14071973446612e-07!GO:0030662;coated vesicle membrane;6.14071973446612e-07!GO:0016740;transferase activity;6.17881313031629e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.14241094135546e-07!GO:0006366;transcription from RNA polymerase II promoter;7.58369892950713e-07!GO:0005762;mitochondrial large ribosomal subunit;7.90671420682096e-07!GO:0000315;organellar large ribosomal subunit;7.90671420682096e-07!GO:0004298;threonine endopeptidase activity;8.09725442594923e-07!GO:0016859;cis-trans isomerase activity;9.05519677603514e-07!GO:0005525;GTP binding;9.77675752347142e-07!GO:0005813;centrosome;9.88049445311165e-07!GO:0051325;interphase;1.27514438919393e-06!GO:0016881;acid-amino acid ligase activity;1.34577317096314e-06!GO:0005768;endosome;1.3730412238891e-06!GO:0005815;microtubule organizing center;2.11433731540136e-06!GO:0045259;proton-transporting ATP synthase complex;2.30259777173666e-06!GO:0048519;negative regulation of biological process;2.48524656619148e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.71354910442354e-06!GO:0008654;phospholipid biosynthetic process;2.78789274085912e-06!GO:0000245;spliceosome assembly;3.0011414079698e-06!GO:0048475;coated membrane;3.33128051522618e-06!GO:0030117;membrane coat;3.33128051522618e-06!GO:0006091;generation of precursor metabolites and energy;3.88848271487976e-06!GO:0006613;cotranslational protein targeting to membrane;3.92833680793518e-06!GO:0008033;tRNA processing;4.4002291546092e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.46214303463076e-06!GO:0007051;spindle organization and biogenesis;4.46883522464442e-06!GO:0005667;transcription factor complex;5.73031538758426e-06!GO:0000314;organellar small ribosomal subunit;6.05495564565231e-06!GO:0005763;mitochondrial small ribosomal subunit;6.05495564565231e-06!GO:0000139;Golgi membrane;6.22972007992896e-06!GO:0006752;group transfer coenzyme metabolic process;6.47157841030624e-06!GO:0031252;leading edge;1.04100920917702e-05!GO:0043069;negative regulation of programmed cell death;1.11904234275228e-05!GO:0006950;response to stress;1.23332797693007e-05!GO:0000075;cell cycle checkpoint;1.23414575591702e-05!GO:0031968;organelle outer membrane;1.28483595764316e-05!GO:0044440;endosomal part;1.299691844612e-05!GO:0010008;endosome membrane;1.299691844612e-05!GO:0042981;regulation of apoptosis;1.37052046827684e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.45650243476692e-05!GO:0051170;nuclear import;1.50320893168763e-05!GO:0043066;negative regulation of apoptosis;1.52644360366957e-05!GO:0019867;outer membrane;1.53712175455633e-05!GO:0032561;guanyl ribonucleotide binding;1.55776573540263e-05!GO:0019001;guanyl nucleotide binding;1.55776573540263e-05!GO:0043067;regulation of programmed cell death;1.65164724286503e-05!GO:0003724;RNA helicase activity;1.68956192168485e-05!GO:0031324;negative regulation of cellular metabolic process;1.83823109899319e-05!GO:0005657;replication fork;1.88858485195825e-05!GO:0005770;late endosome;1.99431293760028e-05!GO:0043021;ribonucleoprotein binding;2.02978309716573e-05!GO:0000151;ubiquitin ligase complex;2.07677574964026e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.15175760389242e-05!GO:0032446;protein modification by small protein conjugation;2.20012214644902e-05!GO:0043623;cellular protein complex assembly;2.24621581394041e-05!GO:0044452;nucleolar part;2.25310757950166e-05!GO:0030867;rough endoplasmic reticulum membrane;2.42868873813666e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.7816579458746e-05!GO:0009165;nucleotide biosynthetic process;2.93786053133786e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.03166911079771e-05!GO:0045454;cell redox homeostasis;3.09507540256829e-05!GO:0016567;protein ubiquitination;3.37021899374615e-05!GO:0031988;membrane-bound vesicle;3.59481567240402e-05!GO:0006626;protein targeting to mitochondrion;3.68502199383689e-05!GO:0006606;protein import into nucleus;4.11859316704653e-05!GO:0006916;anti-apoptosis;4.54166435219079e-05!GO:0000786;nucleosome;4.54166435219079e-05!GO:0008094;DNA-dependent ATPase activity;4.82894671575763e-05!GO:0005741;mitochondrial outer membrane;5.90903671039902e-05!GO:0043681;protein import into mitochondrion;6.00014942037625e-05!GO:0005798;Golgi-associated vesicle;6.71089432466269e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.7709891507843e-05!GO:0005769;early endosome;7.61386006559072e-05!GO:0007088;regulation of mitosis;8.13872043456726e-05!GO:0006612;protein targeting to membrane;8.59034419644549e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.58637760210523e-05!GO:0006383;transcription from RNA polymerase III promoter;9.58637760210523e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000101226599101083!GO:0045786;negative regulation of progression through cell cycle;0.000108513228727585!GO:0006793;phosphorus metabolic process;0.000115353652237942!GO:0006796;phosphate metabolic process;0.000115353652237942!GO:0051087;chaperone binding;0.000133749416476466!GO:0009892;negative regulation of metabolic process;0.000143603868170458!GO:0003714;transcription corepressor activity;0.000148367163270881!GO:0005048;signal sequence binding;0.000151242042617357!GO:0016564;transcription repressor activity;0.000173052559164318!GO:0006302;double-strand break repair;0.00017601279446773!GO:0030880;RNA polymerase complex;0.000184937892240422!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000185772775351511!GO:0004527;exonuclease activity;0.000213717899435657!GO:0030133;transport vesicle;0.000224834230293218!GO:0000776;kinetochore;0.000226200217208652!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00023568253097478!GO:0046474;glycerophospholipid biosynthetic process;0.000239619667152097!GO:0005885;Arp2/3 protein complex;0.000244751656779968!GO:0031982;vesicle;0.000250295657594464!GO:0051052;regulation of DNA metabolic process;0.000261433844262701!GO:0031410;cytoplasmic vesicle;0.000270213650011755!GO:0004576;oligosaccharyl transferase activity;0.000271431470015172!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000281130388559186!GO:0005773;vacuole;0.000285820364773624!GO:0003690;double-stranded DNA binding;0.000285820364773624!GO:0042802;identical protein binding;0.000297352610032675!GO:0051427;hormone receptor binding;0.000299367281403856!GO:0008168;methyltransferase activity;0.000320265569173468!GO:0008250;oligosaccharyl transferase complex;0.000331381914772847!GO:0003713;transcription coactivator activity;0.000343587411790937!GO:0005791;rough endoplasmic reticulum;0.000346608747519186!GO:0051789;response to protein stimulus;0.000362083767165418!GO:0006986;response to unfolded protein;0.000362083767165418!GO:0016741;transferase activity, transferring one-carbon groups;0.000386954535059393!GO:0016310;phosphorylation;0.00038871894885707!GO:0008361;regulation of cell size;0.000412013123159804!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000422711610935785!GO:0031072;heat shock protein binding;0.000430615836747171!GO:0050794;regulation of cellular process;0.000430615836747171!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000437491234232657!GO:0051168;nuclear export;0.000440048567585776!GO:0007006;mitochondrial membrane organization and biogenesis;0.000457506134160763!GO:0016568;chromatin modification;0.000473445354546955!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000473445354546955!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000476587291010518!GO:0000428;DNA-directed RNA polymerase complex;0.000476587291010518!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000477975116675983!GO:0008186;RNA-dependent ATPase activity;0.000480128730907836!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000515512895175369!GO:0016563;transcription activator activity;0.000534042693445225!GO:0016049;cell growth;0.000542830478009943!GO:0019899;enzyme binding;0.000542830478009943!GO:0019843;rRNA binding;0.000543329464537301!GO:0035257;nuclear hormone receptor binding;0.000605527766594817!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000618623650311944!GO:0006839;mitochondrial transport;0.000658642722757738!GO:0003684;damaged DNA binding;0.000682896826578708!GO:0000049;tRNA binding;0.00071786150256513!GO:0000059;protein import into nucleus, docking;0.00071786150256513!GO:0007010;cytoskeleton organization and biogenesis;0.00071786150256513!GO:0046489;phosphoinositide biosynthetic process;0.000723625034648441!GO:0046483;heterocycle metabolic process;0.00076622401404231!GO:0018196;peptidyl-asparagine modification;0.000772250032362827!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000772250032362827!GO:0001558;regulation of cell growth;0.000783236851889817!GO:0007093;mitotic cell cycle checkpoint;0.000812083326214886!GO:0051920;peroxiredoxin activity;0.000818469733880129!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000826243495842324!GO:0016126;sterol biosynthetic process;0.000900387597546625!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00093714028646616!GO:0030663;COPI coated vesicle membrane;0.000948018029315568!GO:0030126;COPI vesicle coat;0.000948018029315568!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000974004410518616!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000974004410518616!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000974004410518616!GO:0003729;mRNA binding;0.00102750111293955!GO:0004518;nuclease activity;0.00103821480444175!GO:0008180;signalosome;0.00106799596574613!GO:0048500;signal recognition particle;0.00109344627694974!GO:0005905;coated pit;0.00111268741810229!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00112334042610199!GO:0004004;ATP-dependent RNA helicase activity;0.00120338604541151!GO:0016363;nuclear matrix;0.00121159011002039!GO:0000323;lytic vacuole;0.00125334689353815!GO:0005764;lysosome;0.00125334689353815!GO:0008312;7S RNA binding;0.0012597322149108!GO:0003678;DNA helicase activity;0.00128518489868065!GO:0000082;G1/S transition of mitotic cell cycle;0.00143339889121253!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00147407943778453!GO:0044262;cellular carbohydrate metabolic process;0.00153300015238623!GO:0046467;membrane lipid biosynthetic process;0.0015355806422116!GO:0016481;negative regulation of transcription;0.00154015417568509!GO:0009112;nucleobase metabolic process;0.00155308566640966!GO:0005684;U2-dependent spliceosome;0.00165326524015286!GO:0007059;chromosome segregation;0.001674248094707!GO:0051252;regulation of RNA metabolic process;0.00171123992200126!GO:0050662;coenzyme binding;0.00172919200179145!GO:0030036;actin cytoskeleton organization and biogenesis;0.00173120290242028!GO:0006414;translational elongation;0.00173907483062439!GO:0007052;mitotic spindle organization and biogenesis;0.00179943510841063!GO:0006310;DNA recombination;0.00186855259098222!GO:0008610;lipid biosynthetic process;0.00187231501685248!GO:0000178;exosome (RNase complex);0.00193864378096799!GO:0019752;carboxylic acid metabolic process;0.0019698992187411!GO:0030176;integral to endoplasmic reticulum membrane;0.00201854079693608!GO:0009116;nucleoside metabolic process;0.00203316671727073!GO:0006082;organic acid metabolic process;0.00204588786195089!GO:0051539;4 iron, 4 sulfur cluster binding;0.00218212483267016!GO:0048522;positive regulation of cellular process;0.00232346025852111!GO:0006275;regulation of DNA replication;0.00238726603977662!GO:0043488;regulation of mRNA stability;0.002415069711561!GO:0043487;regulation of RNA stability;0.002415069711561!GO:0006979;response to oxidative stress;0.00250773371694545!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00254329845429886!GO:0045047;protein targeting to ER;0.00254329845429886!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00270537549569075!GO:0015399;primary active transmembrane transporter activity;0.00270537549569075!GO:0032508;DNA duplex unwinding;0.00280352038800427!GO:0032392;DNA geometric change;0.00280352038800427!GO:0015631;tubulin binding;0.00287049796392977!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00288291572300135!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00288291572300135!GO:0015002;heme-copper terminal oxidase activity;0.00288291572300135!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00288291572300135!GO:0004129;cytochrome-c oxidase activity;0.00288291572300135!GO:0016044;membrane organization and biogenesis;0.00300261838289469!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302593020429279!GO:0008139;nuclear localization sequence binding;0.00311843716119492!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00314424201809166!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00318161476532517!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00318161476532517!GO:0051540;metal cluster binding;0.00325836580783108!GO:0051536;iron-sulfur cluster binding;0.00325836580783108!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00330669930577115!GO:0048144;fibroblast proliferation;0.00331848234735933!GO:0048145;regulation of fibroblast proliferation;0.00331848234735933!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00333672428326625!GO:0030137;COPI-coated vesicle;0.00340305605163771!GO:0051287;NAD binding;0.00340665676264531!GO:0006352;transcription initiation;0.00362183867310364!GO:0006268;DNA unwinding during replication;0.00373366972000242!GO:0048146;positive regulation of fibroblast proliferation;0.00381188199194906!GO:0005758;mitochondrial intermembrane space;0.00416318236175939!GO:0006695;cholesterol biosynthetic process;0.00428304232930519!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00429277575585207!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00429277575585207!GO:0009451;RNA modification;0.00434917511657349!GO:0006402;mRNA catabolic process;0.004652648042258!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00469709604234771!GO:0006144;purine base metabolic process;0.00481586137026762!GO:0007243;protein kinase cascade;0.00481586137026762!GO:0030132;clathrin coat of coated pit;0.00520704437129827!GO:0004532;exoribonuclease activity;0.00537570330981205!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00537570330981205!GO:0008408;3'-5' exonuclease activity;0.00590060955445888!GO:0065009;regulation of a molecular function;0.00596994649125872!GO:0043022;ribosome binding;0.00598234582332089!GO:0007050;cell cycle arrest;0.00598960682667021!GO:0032984;macromolecular complex disassembly;0.00600657243223512!GO:0006595;polyamine metabolic process;0.00609614582878222!GO:0048471;perinuclear region of cytoplasm;0.00658950628815845!GO:0006740;NADPH regeneration;0.00667725583275841!GO:0006098;pentose-phosphate shunt;0.00667725583275841!GO:0006506;GPI anchor biosynthetic process;0.00677812839041618!GO:0006401;RNA catabolic process;0.00685038606777015!GO:0006118;electron transport;0.00687518539263992!GO:0016251;general RNA polymerase II transcription factor activity;0.00696602025095493!GO:0007346;regulation of progression through mitotic cell cycle;0.00697050847134861!GO:0006220;pyrimidine nucleotide metabolic process;0.00697050847134861!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00697050847134861!GO:0005869;dynactin complex;0.00706851655613759!GO:0016272;prefoldin complex;0.0071005390338874!GO:0030027;lamellipodium;0.00737077813964802!GO:0015992;proton transport;0.00748689306168132!GO:0016197;endosome transport;0.00757542142017572!GO:0006818;hydrogen transport;0.00765738782081231!GO:0030145;manganese ion binding;0.00774055953125471!GO:0048487;beta-tubulin binding;0.00776724056483263!GO:0030134;ER to Golgi transport vesicle;0.00778702288242353!GO:0003746;translation elongation factor activity;0.00789908636551869!GO:0035258;steroid hormone receptor binding;0.00796287443083155!GO:0000339;RNA cap binding;0.00801414061481122!GO:0042158;lipoprotein biosynthetic process;0.00801414061481122!GO:0006611;protein export from nucleus;0.00809526532424553!GO:0000910;cytokinesis;0.00816713455726186!GO:0006497;protein amino acid lipidation;0.00843653373785661!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00849677401518025!GO:0005832;chaperonin-containing T-complex;0.00868570879894123!GO:0004177;aminopeptidase activity;0.00871151914990459!GO:0031970;organelle envelope lumen;0.00874679680556848!GO:0030029;actin filament-based process;0.00882064332151244!GO:0006520;amino acid metabolic process;0.00905307738164424!GO:0006778;porphyrin metabolic process;0.00928517126564535!GO:0033013;tetrapyrrole metabolic process;0.00928517126564535!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00937624797638912!GO:0005876;spindle microtubule;0.00942907201229813!GO:0005637;nuclear inner membrane;0.00954642780171628!GO:0009303;rRNA transcription;0.0097626245656576!GO:0006650;glycerophospholipid metabolic process;0.0097626245656576!GO:0043284;biopolymer biosynthetic process;0.00989213267144183!GO:0030127;COPII vesicle coat;0.0098986589790734!GO:0012507;ER to Golgi transport vesicle membrane;0.0098986589790734!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00992566195935247!GO:0043596;nuclear replication fork;0.0100503708508868!GO:0008047;enzyme activator activity;0.0100702443145268!GO:0000922;spindle pole;0.010208713330716!GO:0030521;androgen receptor signaling pathway;0.0104774498494483!GO:0030658;transport vesicle membrane;0.0104774498494483!GO:0001726;ruffle;0.0105039542584774!GO:0043241;protein complex disassembly;0.0105580377937659!GO:0003682;chromatin binding;0.0106647608796546!GO:0017166;vinculin binding;0.0109001489773005!GO:0015036;disulfide oxidoreductase activity;0.0110954326751608!GO:0016408;C-acyltransferase activity;0.0112036720623459!GO:0005862;muscle thin filament tropomyosin;0.0112140308777383!GO:0006405;RNA export from nucleus;0.0116524219891534!GO:0008632;apoptotic program;0.0119216825083109!GO:0005874;microtubule;0.0120369609382007!GO:0007021;tubulin folding;0.0120469732888997!GO:0006509;membrane protein ectodomain proteolysis;0.0121805736403453!GO:0033619;membrane protein proteolysis;0.0121805736403453!GO:0003711;transcription elongation regulator activity;0.0122104423715573!GO:0006505;GPI anchor metabolic process;0.0122104423715573!GO:0008283;cell proliferation;0.0124202078869902!GO:0031625;ubiquitin protein ligase binding;0.012485527791719!GO:0022890;inorganic cation transmembrane transporter activity;0.012488394375444!GO:0031124;mRNA 3'-end processing;0.0126005261670168!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0129676220553741!GO:0043624;cellular protein complex disassembly;0.0130289693731476!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.013138710702989!GO:0000287;magnesium ion binding;0.0132862244154593!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0134774311916533!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0135716391368012!GO:0046870;cadmium ion binding;0.0142113997840667!GO:0031902;late endosome membrane;0.0144001314585907!GO:0042770;DNA damage response, signal transduction;0.0145666654257257!GO:0048037;cofactor binding;0.0146159376852963!GO:0000096;sulfur amino acid metabolic process;0.0147408442587373!GO:0009124;nucleoside monophosphate biosynthetic process;0.0152109822643735!GO:0009123;nucleoside monophosphate metabolic process;0.0152109822643735!GO:0031901;early endosome membrane;0.0157324482344867!GO:0004003;ATP-dependent DNA helicase activity;0.0160706382960417!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0163184058132809!GO:0043492;ATPase activity, coupled to movement of substances;0.0163184058132809!GO:0008637;apoptotic mitochondrial changes;0.0164486951627861!GO:0016860;intramolecular oxidoreductase activity;0.0169752926338543!GO:0031418;L-ascorbic acid binding;0.0169889137151465!GO:0006289;nucleotide-excision repair;0.0171087713834101!GO:0030118;clathrin coat;0.0173648744334926!GO:0006007;glucose catabolic process;0.0174282790002601!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0174826565768878!GO:0045039;protein import into mitochondrial inner membrane;0.0174826565768878!GO:0051101;regulation of DNA binding;0.0175775246119097!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178207107948881!GO:0005732;small nucleolar ribonucleoprotein complex;0.0181779913286543!GO:0033673;negative regulation of kinase activity;0.0185203190063923!GO:0006469;negative regulation of protein kinase activity;0.0185203190063923!GO:0000175;3'-5'-exoribonuclease activity;0.0185476501381131!GO:0019206;nucleoside kinase activity;0.0189074781901671!GO:0040008;regulation of growth;0.0189074781901671!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0189074781901671!GO:0008538;proteasome activator activity;0.0190297301553956!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0191032240498934!GO:0008022;protein C-terminus binding;0.019320033086803!GO:0051348;negative regulation of transferase activity;0.0200564717176598!GO:0031371;ubiquitin conjugating enzyme complex;0.0203132405153868!GO:0000725;recombinational repair;0.0203132405153868!GO:0000724;double-strand break repair via homologous recombination;0.0203132405153868!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0203221545511864!GO:0031570;DNA integrity checkpoint;0.020378073312676!GO:0005669;transcription factor TFIID complex;0.0204618435500837!GO:0008320;protein transmembrane transporter activity;0.0218885230404864!GO:0007017;microtubule-based process;0.0225952078114149!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0230106697121384!GO:0030833;regulation of actin filament polymerization;0.0233178111288862!GO:0007034;vacuolar transport;0.0233178111288862!GO:0003756;protein disulfide isomerase activity;0.0233945364003413!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0233945364003413!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0242639787482581!GO:0030660;Golgi-associated vesicle membrane;0.0242724386604696!GO:0046112;nucleobase biosynthetic process;0.0247493462948303!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0247845513712926!GO:0006790;sulfur metabolic process;0.0251531111105076!GO:0022411;cellular component disassembly;0.0252035093403583!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0252035093403583!GO:0016584;nucleosome positioning;0.0252035093403583!GO:0043601;nuclear replisome;0.0253042734188232!GO:0030894;replisome;0.0253042734188232!GO:0006284;base-excision repair;0.0254847464214746!GO:0006360;transcription from RNA polymerase I promoter;0.0254847464214746!GO:0030041;actin filament polymerization;0.0256899806557636!GO:0006733;oxidoreduction coenzyme metabolic process;0.0257810105301522!GO:0042168;heme metabolic process;0.0267356135238929!GO:0031529;ruffle organization and biogenesis;0.0268046839776192!GO:0006400;tRNA modification;0.0273316634743509!GO:0006779;porphyrin biosynthetic process;0.0275490835638397!GO:0033014;tetrapyrrole biosynthetic process;0.0275490835638397!GO:0006739;NADP metabolic process;0.0277491850960025!GO:0007264;small GTPase mediated signal transduction;0.0279333663296494!GO:0009161;ribonucleoside monophosphate metabolic process;0.0279540069554971!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0279540069554971!GO:0030032;lamellipodium biogenesis;0.0280666452276087!GO:0030433;ER-associated protein catabolic process;0.0284405585213824!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0284405585213824!GO:0050789;regulation of biological process;0.0289850337363842!GO:0046128;purine ribonucleoside metabolic process;0.0296120668083106!GO:0042278;purine nucleoside metabolic process;0.0296120668083106!GO:0051098;regulation of binding;0.0300904223791365!GO:0030508;thiol-disulfide exchange intermediate activity;0.0319611836730436!GO:0009119;ribonucleoside metabolic process;0.0323578407789177!GO:0008092;cytoskeletal protein binding;0.0323693369934588!GO:0006417;regulation of translation;0.0323693369934588!GO:0043414;biopolymer methylation;0.0334616029321001!GO:0006378;mRNA polyadenylation;0.0335606147472928!GO:0006892;post-Golgi vesicle-mediated transport;0.0337136267456928!GO:0050681;androgen receptor binding;0.0339199224897339!GO:0007040;lysosome organization and biogenesis;0.0339442612508769!GO:0016407;acetyltransferase activity;0.0341936060602621!GO:0008234;cysteine-type peptidase activity;0.0342091117100441!GO:0035035;histone acetyltransferase binding;0.0342091117100441!GO:0000152;nuclear ubiquitin ligase complex;0.0342316037884955!GO:0051128;regulation of cellular component organization and biogenesis;0.0342844000908647!GO:0022408;negative regulation of cell-cell adhesion;0.034800529506837!GO:0030384;phosphoinositide metabolic process;0.0349952681543573!GO:0032259;methylation;0.0350604550788857!GO:0000228;nuclear chromosome;0.0354689668383956!GO:0008652;amino acid biosynthetic process;0.0357221595437796!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0357221595437796!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0364262989619156!GO:0009967;positive regulation of signal transduction;0.0370030892544408!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0370030892544408!GO:0010257;NADH dehydrogenase complex assembly;0.0370030892544408!GO:0033108;mitochondrial respiratory chain complex assembly;0.0370030892544408!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0383829663201904!GO:0005784;translocon complex;0.0385627865300501!GO:0031123;RNA 3'-end processing;0.03875509057141!GO:0045792;negative regulation of cell size;0.03875509057141!GO:0006376;mRNA splice site selection;0.0390268405192412!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0390268405192412!GO:0030911;TPR domain binding;0.0394880666767353!GO:0006541;glutamine metabolic process;0.0394880666767353!GO:0035267;NuA4 histone acetyltransferase complex;0.0394880666767353!GO:0004540;ribonuclease activity;0.0398448897428929!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.040174638940254!GO:0030308;negative regulation of cell growth;0.0406114621407815!GO:0008536;Ran GTPase binding;0.0407437304783386!GO:0007569;cell aging;0.0412724859329895!GO:0005801;cis-Golgi network;0.0412724859329895!GO:0047485;protein N-terminus binding;0.0412847717324593!GO:0006266;DNA ligation;0.0412847717324593!GO:0046519;sphingoid metabolic process;0.0418310540577209!GO:0005092;GDP-dissociation inhibitor activity;0.0418310540577209!GO:0008097;5S rRNA binding;0.041921359825257!GO:0000819;sister chromatid segregation;0.041945084727201!GO:0003923;GPI-anchor transamidase activity;0.0424928710860606!GO:0016255;attachment of GPI anchor to protein;0.0424928710860606!GO:0042765;GPI-anchor transamidase complex;0.0424928710860606!GO:0032200;telomere organization and biogenesis;0.042564520210487!GO:0000723;telomere maintenance;0.042564520210487!GO:0048660;regulation of smooth muscle cell proliferation;0.0430908174151038!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0437294106665592!GO:0006730;one-carbon compound metabolic process;0.0442594459452375!GO:0000070;mitotic sister chromatid segregation;0.0443440660799592!GO:0043189;H4/H2A histone acetyltransferase complex;0.044536945328795!GO:0005588;collagen type V;0.0446738386950517!GO:0004448;isocitrate dehydrogenase activity;0.0448383872858873!GO:0042393;histone binding;0.0449928340903162!GO:0000077;DNA damage checkpoint;0.0461815551755888!GO:0030496;midbody;0.0463835477383758!GO:0008287;protein serine/threonine phosphatase complex;0.0464103809330861!GO:0031543;peptidyl-proline dioxygenase activity;0.0464362120444672!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0485385084343149!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.048956209899395!GO:0009262;deoxyribonucleotide metabolic process;0.0492978223661155!GO:0006270;DNA replication initiation;0.0493681155725428!GO:0030125;clathrin vesicle coat;0.049824814988476!GO:0030665;clathrin coated vesicle membrane;0.049824814988476!GO:0051270;regulation of cell motility;0.0499026257052154 | |||
|sample_id=11217 | |sample_id=11217 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
Line 76: | Line 105: | ||
|sample_tissue=adipose tissue | |sample_tissue=adipose tissue | ||
|top_motifs=NKX2-2,8:1.71464878965;IKZF1:1.1906642685;HES1:1.15300629331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09591637744;NR3C1:1.02232166857;TAL1_TCF{3,4,12}:1.00139571189;HSF1,2:0.971376585072;EN1,2:0.970833207221;ZNF238:0.958002186392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.88481447979;HOX{A4,D4}:0.84401883356;GFI1B:0.834644183824;PAX8:0.831247182371;TFDP1:0.815853402571;MYBL2:0.810295337457;E2F1..5:0.736156406927;FOXL1:0.681276191965;NFATC1..3:0.639538300555;YY1:0.628659033597;NR6A1:0.621351980202;GLI1..3:0.610231843624;TEF:0.577157009666;GFI1:0.570779920334;POU3F1..4:0.550799552372;AR:0.523021585348;TBP:0.509471194292;AHR_ARNT_ARNT2:0.50915665155;HOX{A6,A7,B6,B7}:0.487472201537;RXR{A,B,G}:0.481065105862;FOXD3:0.456745608269;LEF1_TCF7_TCF7L1,2:0.430799612881;SRF:0.423326710753;SOX5:0.406325218651;NFE2L2:0.381563263754;NR5A1,2:0.367140774729;NFIX:0.364884161543;NANOG{mouse}:0.359171209003;MYB:0.352775048397;HAND1,2:0.349661572565;ZNF384:0.318717780871;TLX1..3_NFIC{dimer}:0.31652892747;PBX1:0.304295759439;ESRRA:0.285739948417;XBP1:0.283902990189;LHX3,4:0.28337835004;NANOG:0.28199350463;HOX{A5,B5}:0.278506989878;UFEwm:0.276574378781;CDC5L:0.275920462146;ESR1:0.272994204424;FOXQ1:0.249097545704;FOS_FOS{B,L1}_JUN{B,D}:0.238625968959;TEAD1:0.237767618805;ELK1,4_GABP{A,B1}:0.226375180371;TP53:0.207133678294;PAX4:0.199390260067;PDX1:0.193569463322;GATA4:0.189617881816;BACH2:0.18721526713;ATF6:0.184217850855;TFCP2:0.181193114962;NR1H4:0.16614987399;MAFB:0.165765748033;ELF1,2,4:0.165448463156;ALX4:0.16540602762;HNF1A:0.164220068891;HMGA1,2:0.1595434018;STAT2,4,6:0.154728436302;PRDM1:0.154393207844;ZIC1..3:0.152518680916;NFY{A,B,C}:0.147828444172;CRX:0.132223615064;EVI1:0.103644473683;RFX1:0.102249061872;XCPE1{core}:0.0974524769921;HBP1_HMGB_SSRP1_UBTF:0.0971474580121;SOX17:0.0920117669772;ZNF143:0.0865617637817;HLF:0.0863680554182;GZF1:0.074411192642;FOSL2:0.0722473632287;bHLH_family:0.0665588026999;GTF2A1,2:0.0626148593096;SPZ1:0.055865767331;KLF4:0.0523676960485;TBX4,5:0.0353978819815;TFAP4:0.0316395186786;NKX3-2:0.0222679855844;NKX2-1,4:0.0201687835224;PAX1,9:0.0180024754516;HOXA9_MEIS1:0.0119726198616;PRRX1,2:0.00775715345471;POU6F1:0.00281338571443;ADNP_IRX_SIX_ZHX:-0.0111945950616;NKX2-3_NKX2-5:-0.0218459346103;ARID5B:-0.0220449494484;SOX{8,9,10}:-0.0537999607126;POU1F1:-0.0642310880496;MEF2{A,B,C,D}:-0.0645557876841;NKX3-1:-0.0754098150137;NFE2:-0.0772623545339;T:-0.0837556434283;MTF1:-0.0881012849418;EBF1:-0.0998762000844;ZNF423:-0.115088552538;GTF2I:-0.12157486177;AIRE:-0.1253401131;PAX3,7:-0.129061036845;RUNX1..3:-0.132908340885;RBPJ:-0.133030362358;SMAD1..7,9:-0.134676741348;ETS1,2:-0.143157434921;ALX1:-0.143592742037;CREB1:-0.150399111362;DMAP1_NCOR{1,2}_SMARC:-0.154258879163;HIF1A:-0.168720389739;PPARG:-0.17427097816;ZNF148:-0.175525653526;POU2F1..3:-0.176337394704;HNF4A_NR2F1,2:-0.181558154197;NFIL3:-0.189457914903;NFKB1_REL_RELA:-0.194253831321;NRF1:-0.198325928592;GATA6:-0.205095987733;ZBTB16:-0.207447803947;TOPORS:-0.220481154223;STAT5{A,B}:-0.225064760578;FOXA2:-0.229148024676;RXRA_VDR{dimer}:-0.243439656847;PAX2:-0.245282644697;SPIB:-0.248237179832;POU5F1:-0.266149310362;JUN:-0.272008039962;PAX5:-0.272917083132;IRF1,2:-0.28571894812;GCM1,2:-0.293342617893;CUX2:-0.300057924729;SPI1:-0.303186554417;NHLH1,2:-0.304495597495;VSX1,2:-0.309225550931;CEBPA,B_DDIT3:-0.309723175479;FOX{I1,J2}:-0.332153351513;ZBTB6:-0.341948669231;REST:-0.341988971396;MZF1:-0.342283734124;TFAP2{A,C}:-0.375817876881;OCT4_SOX2{dimer}:-0.396662989766;ONECUT1,2:-0.413189670205;IRF7:-0.434537379114;SOX2:-0.436404882722;MTE{core}:-0.439843945184;TGIF1:-0.441020919302;FOXP1:-0.446860448741;FOX{D1,D2}:-0.450451032538;NFE2L1:-0.462344852709;BPTF:-0.490473650263;STAT1,3:-0.552774158187;HIC1:-0.558788514171;FOXO1,3,4:-0.564749247033;ATF2:-0.567295778097;ZFP161:-0.568549344755;DBP:-0.569938600698;FOXM1:-0.586826299767;TLX2:-0.613186518197;RORA:-0.624184477253;MYFfamily:-0.628155625007;PAX6:-0.651404595038;PATZ1:-0.66528730359;BREu{core}:-0.668962154878;IKZF2:-0.674870845406;CDX1,2,4:-0.682629099932;TFAP2B:-0.69139302297;RFX2..5_RFXANK_RFXAP:-0.70014262893;SP1:-0.738709028996;PITX1..3:-0.742856302532;EGR1..3:-0.748976324195;FOXP3:-0.755624995801;ATF5_CREB3:-0.757685935894;LMO2:-0.760673758822;HMX1:-0.764321595229;MAZ:-0.793206792296;FOXN1:-0.805324118077;MED-1{core}:-0.841937194198;RREB1:-0.843818699961;SNAI1..3:-0.883134032335;FOX{F1,F2,J1}:-0.884299437336;ZEB1:-0.893974462741;ATF4:-0.919715725583;MYOD1:-0.927389397081;NKX6-1,2:-0.928855862483;SREBF1,2:-1.00383256256;EP300:-1.10243071671 | |top_motifs=NKX2-2,8:1.71464878965;IKZF1:1.1906642685;HES1:1.15300629331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09591637744;NR3C1:1.02232166857;TAL1_TCF{3,4,12}:1.00139571189;HSF1,2:0.971376585072;EN1,2:0.970833207221;ZNF238:0.958002186392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.88481447979;HOX{A4,D4}:0.84401883356;GFI1B:0.834644183824;PAX8:0.831247182371;TFDP1:0.815853402571;MYBL2:0.810295337457;E2F1..5:0.736156406927;FOXL1:0.681276191965;NFATC1..3:0.639538300555;YY1:0.628659033597;NR6A1:0.621351980202;GLI1..3:0.610231843624;TEF:0.577157009666;GFI1:0.570779920334;POU3F1..4:0.550799552372;AR:0.523021585348;TBP:0.509471194292;AHR_ARNT_ARNT2:0.50915665155;HOX{A6,A7,B6,B7}:0.487472201537;RXR{A,B,G}:0.481065105862;FOXD3:0.456745608269;LEF1_TCF7_TCF7L1,2:0.430799612881;SRF:0.423326710753;SOX5:0.406325218651;NFE2L2:0.381563263754;NR5A1,2:0.367140774729;NFIX:0.364884161543;NANOG{mouse}:0.359171209003;MYB:0.352775048397;HAND1,2:0.349661572565;ZNF384:0.318717780871;TLX1..3_NFIC{dimer}:0.31652892747;PBX1:0.304295759439;ESRRA:0.285739948417;XBP1:0.283902990189;LHX3,4:0.28337835004;NANOG:0.28199350463;HOX{A5,B5}:0.278506989878;UFEwm:0.276574378781;CDC5L:0.275920462146;ESR1:0.272994204424;FOXQ1:0.249097545704;FOS_FOS{B,L1}_JUN{B,D}:0.238625968959;TEAD1:0.237767618805;ELK1,4_GABP{A,B1}:0.226375180371;TP53:0.207133678294;PAX4:0.199390260067;PDX1:0.193569463322;GATA4:0.189617881816;BACH2:0.18721526713;ATF6:0.184217850855;TFCP2:0.181193114962;NR1H4:0.16614987399;MAFB:0.165765748033;ELF1,2,4:0.165448463156;ALX4:0.16540602762;HNF1A:0.164220068891;HMGA1,2:0.1595434018;STAT2,4,6:0.154728436302;PRDM1:0.154393207844;ZIC1..3:0.152518680916;NFY{A,B,C}:0.147828444172;CRX:0.132223615064;EVI1:0.103644473683;RFX1:0.102249061872;XCPE1{core}:0.0974524769921;HBP1_HMGB_SSRP1_UBTF:0.0971474580121;SOX17:0.0920117669772;ZNF143:0.0865617637817;HLF:0.0863680554182;GZF1:0.074411192642;FOSL2:0.0722473632287;bHLH_family:0.0665588026999;GTF2A1,2:0.0626148593096;SPZ1:0.055865767331;KLF4:0.0523676960485;TBX4,5:0.0353978819815;TFAP4:0.0316395186786;NKX3-2:0.0222679855844;NKX2-1,4:0.0201687835224;PAX1,9:0.0180024754516;HOXA9_MEIS1:0.0119726198616;PRRX1,2:0.00775715345471;POU6F1:0.00281338571443;ADNP_IRX_SIX_ZHX:-0.0111945950616;NKX2-3_NKX2-5:-0.0218459346103;ARID5B:-0.0220449494484;SOX{8,9,10}:-0.0537999607126;POU1F1:-0.0642310880496;MEF2{A,B,C,D}:-0.0645557876841;NKX3-1:-0.0754098150137;NFE2:-0.0772623545339;T:-0.0837556434283;MTF1:-0.0881012849418;EBF1:-0.0998762000844;ZNF423:-0.115088552538;GTF2I:-0.12157486177;AIRE:-0.1253401131;PAX3,7:-0.129061036845;RUNX1..3:-0.132908340885;RBPJ:-0.133030362358;SMAD1..7,9:-0.134676741348;ETS1,2:-0.143157434921;ALX1:-0.143592742037;CREB1:-0.150399111362;DMAP1_NCOR{1,2}_SMARC:-0.154258879163;HIF1A:-0.168720389739;PPARG:-0.17427097816;ZNF148:-0.175525653526;POU2F1..3:-0.176337394704;HNF4A_NR2F1,2:-0.181558154197;NFIL3:-0.189457914903;NFKB1_REL_RELA:-0.194253831321;NRF1:-0.198325928592;GATA6:-0.205095987733;ZBTB16:-0.207447803947;TOPORS:-0.220481154223;STAT5{A,B}:-0.225064760578;FOXA2:-0.229148024676;RXRA_VDR{dimer}:-0.243439656847;PAX2:-0.245282644697;SPIB:-0.248237179832;POU5F1:-0.266149310362;JUN:-0.272008039962;PAX5:-0.272917083132;IRF1,2:-0.28571894812;GCM1,2:-0.293342617893;CUX2:-0.300057924729;SPI1:-0.303186554417;NHLH1,2:-0.304495597495;VSX1,2:-0.309225550931;CEBPA,B_DDIT3:-0.309723175479;FOX{I1,J2}:-0.332153351513;ZBTB6:-0.341948669231;REST:-0.341988971396;MZF1:-0.342283734124;TFAP2{A,C}:-0.375817876881;OCT4_SOX2{dimer}:-0.396662989766;ONECUT1,2:-0.413189670205;IRF7:-0.434537379114;SOX2:-0.436404882722;MTE{core}:-0.439843945184;TGIF1:-0.441020919302;FOXP1:-0.446860448741;FOX{D1,D2}:-0.450451032538;NFE2L1:-0.462344852709;BPTF:-0.490473650263;STAT1,3:-0.552774158187;HIC1:-0.558788514171;FOXO1,3,4:-0.564749247033;ATF2:-0.567295778097;ZFP161:-0.568549344755;DBP:-0.569938600698;FOXM1:-0.586826299767;TLX2:-0.613186518197;RORA:-0.624184477253;MYFfamily:-0.628155625007;PAX6:-0.651404595038;PATZ1:-0.66528730359;BREu{core}:-0.668962154878;IKZF2:-0.674870845406;CDX1,2,4:-0.682629099932;TFAP2B:-0.69139302297;RFX2..5_RFXANK_RFXAP:-0.70014262893;SP1:-0.738709028996;PITX1..3:-0.742856302532;EGR1..3:-0.748976324195;FOXP3:-0.755624995801;ATF5_CREB3:-0.757685935894;LMO2:-0.760673758822;HMX1:-0.764321595229;MAZ:-0.793206792296;FOXN1:-0.805324118077;MED-1{core}:-0.841937194198;RREB1:-0.843818699961;SNAI1..3:-0.883134032335;FOX{F1,F2,J1}:-0.884299437336;ZEB1:-0.893974462741;ATF4:-0.919715725583;MYOD1:-0.927389397081;NKX6-1,2:-0.928855862483;SREBF1,2:-1.00383256256;EP300:-1.10243071671 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11217-116B2;search_select_hide=table117:FF:11217-116B2 | |||
}} | }} |
Latest revision as of 16:25, 3 June 2020
Name: | Mesenchymal stem cells - adipose, donor0 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10844 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10844
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10844
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0105 |
10 | 10 | 0.1 |
100 | 100 | 0.201 |
101 | 101 | 0.549 |
102 | 102 | 0.901 |
103 | 103 | 0.202 |
104 | 104 | 0.323 |
105 | 105 | 0.955 |
106 | 106 | 0.381 |
107 | 107 | 0.0396 |
108 | 108 | 0.936 |
109 | 109 | 0.0136 |
11 | 11 | 0.0412 |
110 | 110 | 0.0117 |
111 | 111 | 0.355 |
112 | 112 | 0.664 |
113 | 113 | 0.0734 |
114 | 114 | 0.383 |
115 | 115 | 0.92 |
116 | 116 | 0.0774 |
117 | 117 | 0.135 |
118 | 118 | 0.98 |
119 | 119 | 0.283 |
12 | 12 | 0.85 |
120 | 120 | 0.294 |
121 | 121 | 0.304 |
122 | 122 | 0.779 |
123 | 123 | 0.476 |
124 | 124 | 0.695 |
125 | 125 | 0.0872 |
126 | 126 | 0.912 |
127 | 127 | 0.886 |
128 | 128 | 0.486 |
129 | 129 | 0.716 |
13 | 13 | 0.0646 |
130 | 130 | 0.00456 |
131 | 131 | 0.874 |
132 | 132 | 0.675 |
133 | 133 | 0.548 |
134 | 134 | 0.0441 |
135 | 135 | 0.916 |
136 | 136 | 0.912 |
137 | 137 | 0.632 |
138 | 138 | 0.46 |
139 | 139 | 0.887 |
14 | 14 | 0.159 |
140 | 140 | 0.821 |
141 | 141 | 0.185 |
142 | 142 | 0.438 |
143 | 143 | 0.0452 |
144 | 144 | 0.688 |
145 | 145 | 0.177 |
146 | 146 | 0.1 |
147 | 147 | 0.0523 |
148 | 148 | 0.0452 |
149 | 149 | 0.29 |
15 | 15 | 0.0907 |
150 | 150 | 0.164 |
151 | 151 | 0.75 |
152 | 152 | 0.263 |
153 | 153 | 0.817 |
154 | 154 | 0.911 |
155 | 155 | 0.0589 |
156 | 156 | 0.919 |
157 | 157 | 0.618 |
158 | 158 | 0.123 |
159 | 159 | 0.135 |
16 | 16 | 0.035 |
160 | 160 | 0.0879 |
161 | 161 | 0.952 |
162 | 162 | 0.38 |
163 | 163 | 0.974 |
164 | 164 | 0.567 |
165 | 165 | 0.657 |
166 | 166 | 0.522 |
167 | 167 | 0.822 |
168 | 168 | 0.115 |
169 | 169 | 0.00709 |
17 | 17 | 0.181 |
18 | 18 | 0.0673 |
19 | 19 | 0.041 |
2 | 2 | 0.685 |
20 | 20 | 0.551 |
21 | 21 | 0.0475 |
22 | 22 | 0.391 |
23 | 23 | 0.597 |
24 | 24 | 0.172 |
25 | 25 | 0.704 |
26 | 26 | 0.0676 |
27 | 27 | 0.647 |
28 | 28 | 0.241 |
29 | 29 | 0.0734 |
3 | 3 | 0.09 |
30 | 30 | 0.831 |
31 | 31 | 0.838 |
32 | 32 | 2.47849e-5 |
33 | 33 | 0.0847 |
34 | 34 | 0.451 |
35 | 35 | 0.764 |
36 | 36 | 0.0361 |
37 | 37 | 0.0553 |
38 | 38 | 0.44 |
39 | 39 | 0.191 |
4 | 4 | 0.583 |
40 | 40 | 0.15 |
41 | 41 | 0.722 |
42 | 42 | 0.236 |
43 | 43 | 0.168 |
44 | 44 | 0.587 |
45 | 45 | 0.979 |
46 | 46 | 0.0328 |
47 | 47 | 0.0915 |
48 | 48 | 0.0924 |
49 | 49 | 0.287 |
5 | 5 | 0.288 |
50 | 50 | 0.263 |
51 | 51 | 0.314 |
52 | 52 | 0.83 |
53 | 53 | 0.894 |
54 | 54 | 0.814 |
55 | 55 | 0.717 |
56 | 56 | 0.716 |
57 | 57 | 0.203 |
58 | 58 | 0.967 |
59 | 59 | 0.204 |
6 | 6 | 0.623 |
60 | 60 | 0.604 |
61 | 61 | 0.457 |
62 | 62 | 0.455 |
63 | 63 | 0.188 |
64 | 64 | 0.493 |
65 | 65 | 0.269 |
66 | 66 | 0.197 |
67 | 67 | 0.386 |
68 | 68 | 0.927 |
69 | 69 | 0.523 |
7 | 7 | 0.352 |
70 | 70 | 0.887 |
71 | 71 | 0.0195 |
72 | 72 | 0.499 |
73 | 73 | 0.0711 |
74 | 74 | 0.0531 |
75 | 75 | 0.119 |
76 | 76 | 0.684 |
77 | 77 | 0.0959 |
78 | 78 | 0.521 |
79 | 79 | 0.347 |
8 | 8 | 0.00284 |
80 | 80 | 0.735 |
81 | 81 | 0.381 |
82 | 82 | 0.968 |
83 | 83 | 0.04 |
84 | 84 | 0.992 |
85 | 85 | 0.795 |
86 | 86 | 0.869 |
87 | 87 | 0.0379 |
88 | 88 | 0.783 |
89 | 89 | 0.0368 |
9 | 9 | 0.247 |
90 | 90 | 0.105 |
91 | 91 | 0.59 |
92 | 92 | 0.281 |
93 | 93 | 0.619 |
94 | 94 | 0.0693 |
95 | 95 | 0.0819 |
96 | 96 | 0.244 |
97 | 97 | 0.274 |
98 | 98 | 0.513 |
99 | 99 | 0.0177 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10844
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000096 human mesenchymal stem cell of adipose sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)
UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000096 (human mesenchymal stem cell of adipose sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)