FF:11228-116C4: Difference between revisions

Latest revision as of 16:26, 3 June 2020

Name:	Dendritic Cells - plasmacytoid, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10857
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	22 years old adult
sex	female
age	22
cell type	dendritic cell, plasmacytoid
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	PDC737
catalog number	3H100-72-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004835

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10857		CAGE		DRX008215		DRR009087

Accession ID Hg19

Library id		BAM		CTSS
CNhs10857		DRZ000512		DRZ001897

Accession ID Hg38

Library id		BAM		CTSS
CNhs10857		DRZ011862		DRZ013247

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.288
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.234
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.251
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0929
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.262
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.169
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.387
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0929
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.353
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.587
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0929
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0929
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.234
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0929
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.247
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.528
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.251
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.193
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.386
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0929
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0374
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0929
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0221
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.234
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.614
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.362
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0929
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.169
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.197
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0929
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.169
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	1.139
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0929
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.485
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.0929
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.169
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0929
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10857

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.87346e-8
MA0003.1	MA0003.1	0.933
MA0004.1	MA0004.1	0.332
MA0006.1	MA0006.1	0.575
MA0007.1	MA0007.1	0.73
MA0009.1	MA0009.1	0.109
MA0014.1	MA0014.1	0.794
MA0017.1	MA0017.1	0.887
MA0018.2	MA0018.2	0.00319
MA0019.1	MA0019.1	0.542
MA0024.1	MA0024.1	0.077
MA0025.1	MA0025.1	0.0798
MA0027.1	MA0027.1	0.433
MA0028.1	MA0028.1	0.257
MA0029.1	MA0029.1	0.706
MA0030.1	MA0030.1	0.441
MA0031.1	MA0031.1	0.191
MA0035.2	MA0035.2	0.523
MA0038.1	MA0038.1	0.148
MA0039.2	MA0039.2	0.575
MA0040.1	MA0040.1	0.948
MA0041.1	MA0041.1	0.293
MA0042.1	MA0042.1	0.793
MA0043.1	MA0043.1	4.07063e-4
MA0046.1	MA0046.1	0.142
MA0047.2	MA0047.2	0.624
MA0048.1	MA0048.1	0.00561
MA0050.1	MA0050.1	1.65798e-4
MA0051.1	MA0051.1	0.0244
MA0052.1	MA0052.1	0.182
MA0055.1	MA0055.1	3.39387e-4
MA0057.1	MA0057.1	0.278
MA0058.1	MA0058.1	0.205
MA0059.1	MA0059.1	0.437
MA0060.1	MA0060.1	0.0433
MA0061.1	MA0061.1	5.27558e-14
MA0062.2	MA0062.2	7.95191e-8
MA0065.2	MA0065.2	0.398
MA0066.1	MA0066.1	0.376
MA0067.1	MA0067.1	7.84337e-4
MA0068.1	MA0068.1	0.133
MA0069.1	MA0069.1	0.804
MA0070.1	MA0070.1	0.0356
MA0071.1	MA0071.1	0.663
MA0072.1	MA0072.1	0.502
MA0073.1	MA0073.1	0.349
MA0074.1	MA0074.1	0.621
MA0076.1	MA0076.1	0.043
MA0077.1	MA0077.1	0.315
MA0078.1	MA0078.1	0.939
MA0079.2	MA0079.2	0.977
MA0080.2	MA0080.2	2.53396e-13
MA0081.1	MA0081.1	1.4981e-5
MA0083.1	MA0083.1	0.216
MA0084.1	MA0084.1	0.736
MA0087.1	MA0087.1	0.748
MA0088.1	MA0088.1	0.985
MA0090.1	MA0090.1	9.6346e-4
MA0091.1	MA0091.1	0.0817
MA0092.1	MA0092.1	0.933
MA0093.1	MA0093.1	0.404
MA0099.2	MA0099.2	1.02178e-6
MA0100.1	MA0100.1	0.884
MA0101.1	MA0101.1	1.44128e-14
MA0102.2	MA0102.2	2.27259e-4
MA0103.1	MA0103.1	0.095
MA0104.2	MA0104.2	0.0791
MA0105.1	MA0105.1	3.9674e-10
MA0106.1	MA0106.1	0.075
MA0107.1	MA0107.1	5.67079e-16
MA0108.2	MA0108.2	2.0596e-4
MA0111.1	MA0111.1	0.227
MA0112.2	MA0112.2	0.265
MA0113.1	MA0113.1	0.978
MA0114.1	MA0114.1	0.618
MA0115.1	MA0115.1	0.0719
MA0116.1	MA0116.1	0.00318
MA0117.1	MA0117.1	0.0806
MA0119.1	MA0119.1	0.828
MA0122.1	MA0122.1	0.806
MA0124.1	MA0124.1	0.9
MA0125.1	MA0125.1	0.231
MA0131.1	MA0131.1	0.676
MA0135.1	MA0135.1	0.19
MA0136.1	MA0136.1	1.09579e-14
MA0137.2	MA0137.2	0.491
MA0138.2	MA0138.2	0.404
MA0139.1	MA0139.1	0.735
MA0140.1	MA0140.1	0.643
MA0141.1	MA0141.1	0.838
MA0142.1	MA0142.1	0.823
MA0143.1	MA0143.1	0.941
MA0144.1	MA0144.1	0.976
MA0145.1	MA0145.1	0.26
MA0146.1	MA0146.1	0.252
MA0147.1	MA0147.1	0.109
MA0148.1	MA0148.1	0.338
MA0149.1	MA0149.1	0.707
MA0150.1	MA0150.1	6.14971e-5
MA0152.1	MA0152.1	0.0775
MA0153.1	MA0153.1	3.87981e-4
MA0154.1	MA0154.1	0.00836
MA0155.1	MA0155.1	0.466
MA0156.1	MA0156.1	1.42717e-11
MA0157.1	MA0157.1	0.239
MA0159.1	MA0159.1	0.396
MA0160.1	MA0160.1	0.875
MA0162.1	MA0162.1	0.56
MA0163.1	MA0163.1	1.89354e-4
MA0164.1	MA0164.1	0.665
MA0258.1	MA0258.1	0.141
MA0259.1	MA0259.1	0.484

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10857

Novel motif	Logo	P-value
1	1	0.322
10	10	0.0136
100	100	0.954
101	101	0.493
102	102	0.557
103	103	0.228
104	104	0.366
105	105	0.342
106	106	0.00918
107	107	0.778
108	108	0.17
109	109	0.191
11	11	0.278
110	110	0.697
111	111	0.135
112	112	0.763
113	113	0.582
114	114	0.121
115	115	0.505
116	116	0.877
117	117	0.00627
118	118	0.239
119	119	0.173
12	12	0.414
120	120	0.892
121	121	0.423
122	122	0.186
123	123	0.00319
124	124	0.207
125	125	0.0627
126	126	0.483
127	127	0.603
128	128	0.13
129	129	0.956
13	13	0.066
130	130	0.949
131	131	0.969
132	132	0.0561
133	133	0.341
134	134	0.455
135	135	0.916
136	136	0.547
137	137	0.00166
138	138	0.642
139	139	0.0381
14	14	0.192
140	140	0.996
141	141	0.421
142	142	0.348
143	143	0.011
144	144	0.817
145	145	0.754
146	146	0.776
147	147	0.148
148	148	0.024
149	149	0.499
15	15	0.0723
150	150	0.586
151	151	0.274
152	152	0.994
153	153	0.454
154	154	0.458
155	155	0.0703
156	156	0.921
157	157	0.745
158	158	0.163
159	159	0.231
16	16	0.738
160	160	0.681
161	161	0.744
162	162	0.647
163	163	0.672
164	164	0.233
165	165	0.215
166	166	0.331
167	167	0.177
168	168	0.734
169	169	0.951
17	17	0.915
18	18	0.636
19	19	0.381
2	2	0.491
20	20	0.911
21	21	0.847
22	22	0.999
23	23	0.468
24	24	0.371
25	25	0.198
26	26	0.349
27	27	0.548
28	28	0.408
29	29	0.0202
3	3	0.133
30	30	0.141
31	31	0.736
32	32	0.042
33	33	0.206
34	34	0.966
35	35	0.0475
36	36	0.128
37	37	0.095
38	38	0.528
39	39	0.722
4	4	0.421
40	40	0.674
41	41	0.05
42	42	0.0813
43	43	0.104
44	44	0.978
45	45	0.533
46	46	0.379
47	47	0.551
48	48	0.687
49	49	0.105
5	5	0.476
50	50	0.753
51	51	0.382
52	52	0.586
53	53	0.32
54	54	0.83
55	55	0.604
56	56	0.513
57	57	0.586
58	58	0.0526
59	59	0.888
6	6	0.563
60	60	0.19
61	61	0.0739
62	62	0.0277
63	63	0.65
64	64	0.463
65	65	0.671
66	66	0.419
67	67	0.291
68	68	0.367
69	69	0.718
7	7	0.175
70	70	0.0282
71	71	0.0631
72	72	0.229
73	73	0.553
74	74	0.252
75	75	0.0773
76	76	0.324
77	77	0.719
78	78	0.0362
79	79	0.937
8	8	0.753
80	80	0.121
81	81	0.315
82	82	0.242
83	83	0.284
84	84	0.033
85	85	0.221
86	86	0.0643
87	87	0.121
88	88	0.45
89	89	0.473
9	9	0.692
90	90	0.0691
91	91	0.842
92	92	0.526
93	93	0.508
94	94	0.0937
95	95	0.153
96	96	0.923
97	97	0.936
98	98	0.228
99	99	6.13711e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10857

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000044 human monocyte immature derived dendritic cell sample
FF:0000045 human plasmacytoid dendritic cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
0000784 (plasmacytoid dendritic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
0000045 (human plasmacytoid dendritic cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004835
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000990,CL:0002087,CL:0000255,CL:0000451,CL:0002031,CL:0000576,CL:0000840,CL:0000037,CL:0000566,CL:0000049,CL:0000784,CL:0000557,CL:0000837,CL:0002009,CL:0000040,CL:0000559,CL:0001029
+|accession_numbers=CAGE;DRX008215;DRR009087;DRZ000512;DRZ001897;DRZ011862;DRZ013247
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840,CL:0000784
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000044,FF:0000045
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!3.37!2341.26!IRF8;;chr6:391743..391759,+!p1@IRF4!3.33!2127.57!IRF4;;chr19:50922187..50922204,+!p1@SPIB!2.53!339.61!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.31!201.52!PLEK;;chr2:100759010..100759035,-!p1@AFF3!2.01!101.84!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!2.00!293.58!BCL11A;;chr6:45390599..45390662,+!p11@RUNX2!1.95!104.22!RUNX2;;chr16:85936412..85936431,+!p2@IRF8!1.94!86.10!IRF8;;chr18:53257001..53257015,-!p5@TCF4!1.93!141.66!TCF4;;chr11:615942..615957,-!p1@IRF7!1.92!730.02!IRF7;;chr1:244214577..244214593,+!p1@ZNF238!1.92!82.52!ZNF238;;chr2:100759037..100759058,-!p2@AFF3!1.89!77.27!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!1.89!75.84!ZNF331;;chr6:45390300..45390335,+!p4@RUNX2!1.86!109.71!RUNX2;;chr7:50344251..50344288,+!p3@IKZF1!1.85!69.16!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.82!65.82!PLEK;;chr8:135614120..135614149,-!p5@ZFAT!1.81!63.68!ZFAT;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.08!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.37!IKZF1;;chr19:12721790..12721810,+!p2@ZNF791!1.69!126.64!ZNF791;;chr8:135613849..135613883,-!p7@ZFAT!1.69!47.94!ZFAT;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.84!NR4A3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.36!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.64!IKZF1;;chr18:53253297..53253322,-!p30@TCF4!1.64!42.93!TCF4;;chr1:244214655..244214666,+!p7@ZNF238!1.64!42.69!ZNF238;;chr2:60781201..60781258,-!p3@BCL11A!1.63!41.97!BCL11A;;chr6:45390269..45390298,+!p5@RUNX2!1.62!65.82!RUNX2;;chr5:142782823..142782854,-!p3@NR3C1!1.62!57.00!NR3C1;;chr8:135614084..135614119,-!p4@ZFAT!1.60!38.87!ZFAT;;chr18:53255839..53255854,-!p13@TCF4!1.58!43.64!TCF4;;chr15:31619140..31619152,+!p11@KLF13!1.51!31.24!KLF13;;chr2:145277640..145277771,-!p1@ZEB2!1.48!375.38!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.47!55.33!NFKBID;;chr2:60780753..60780800,-!p1@BCL11A!1.46!133.08!BCL11A;;chr18:52989565..52989623,-!p9@TCF4!1.46!35.30!TCF4;;chr12:111537227..111537239,+!p7@CUX2!1.45!27.19!CUX2;;chr1:244214611..244214624,+!p4@ZNF238!1.45!26.95!ZNF238;;chr13:72441315..72441454,-!p1@DACH1!1.44!52.71!DACH1;;chr5:88178983..88179012,-!p1@MEF2C!1.41!182.45!MEF2C;;chr2:157189180..157189290,-!p1@NR4A2!1.40!120.68!NR4A2;;chr1:92949331..92949377,-!p2@GFI1!1.40!23.85!GFI1;;chr5:142814241..142814278,-!p12@NR3C1!1.39!23.61!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.38!140.47!CSRNP1;;chr9:102584241..102584261,+!p4@NR4A3!1.38!35.54!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!1.37!22.66!NFKB2;;chr1:156470515..156470542,-!p2@MEF2D!1.36!111.38!MEF2D;;chr10:35484053..35484076,+!p1@CREM!1.36!53.66!CREM;;chr6:135502501..135502546,+!p1@MYB!1.35!25.52!MYB;;chr1:40367530..40367597,-!p1@MYCL1!1.33!36.97!MYCL1;;chr1:157108728..157108744,-!p5@ETV3!1.32!20.03!ETV3;;chr6:12009042..12009092,+!p6@HIVEP1!1.30!24.56!HIVEP1;;chr6:45390343..45390388,+!p10@RUNX2!1.29!24.80!RUNX2;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.65!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.27!17.65!ZBED1;;chr9:117150254..117150271,-!p1@AKNA!1.26!46.98!AKNA;;chr18:52989031..52989079,-!p2@TCF4!1.26!40.07!TCF4;;chr7:104654690..104654704,+!p2@MLL5!1.26!33.87!MLL5;;chr2:60778035..60778060,-!p4@BCL11A!1.26!20.51!BCL11A;;chr2:60780730..60780742,-!p5@BCL11A!1.25!16.69!BCL11A;;chr12:54778471..54778528,-!p1@ZNF385A!1.25!16.69!ZNF385A;;chr18:53255415..53255491,-!p1@TCF4!1.24!137.37!TCF4;;chr14:74226961..74227020,-!p1@C14orf43!1.23!102.55!C14orf43;;chr15:31619200..31619211,+!p12@KLF13!1.23!17.17!KLF13;;chr2:61108695..61108753,+!p1@REL!1.21!102.31!REL;;chr15:74833584..74833626,+!p1@ARID3B!1.21!34.82!ARID3B;;chr6:45390442..45390479,+!p8@RUNX2!1.21!22.90!RUNX2;;chr6:44233252..44233296,-!p1@NFKBIE!1.20!143.09!NFKBIE;;chr18:53254566..53254567,-!p8@TCF4!1.20!24.33!TCF4;;chr18:53253077..53253100,-!p46@TCF4!1.19!14.55!TCF4;;chr2:100758991..100759009,-!p3@AFF3!1.19!14.55!AFF3;;chr1:40367668..40367684,-!p2@MYCL1!1.19!14.55!MYCL1;;chr8:123793988..123794016,+!p1@ZHX2!1.18!25.04!ZHX2;;chr8:135613895..135613921,-!p8@ZFAT!1.18!14.31!ZFAT;;chrX:106960180..106960197,-!p2@TSC22D3!1.17!52.23!TSC22D3;;chr9:102584159..102584174,+!p2@NR4A3!1.17!25.04!NR4A3;;chr2:97202480..97202499,+!p1@ARID5A!1.16!134.99!ARID5A;;chr6:45390025..45390076,+!p2@RUNX2!1.16!32.20!RUNX2;;chr18:53253323..53253359,-!p19@TCF4!1.16!13.59!TCF4;;chr6:135502408..135502459,+!p2@MYB!1.15!15.26!MYB;;chr15:31619119..31619131,+!p14@KLF13!1.15!14.55!KLF13;;chr1:92950138..92950159,-!p4@GFI1!1.15!13.12!GFI1;;chr6:12008986..12009016,+!p3@HIVEP1!1.14!39.83!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.14!24.33!RUNX3;;chr7:104654718..104654741,+!p3@MLL5!1.14!18.84!MLL5;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.65!STAT4;;chr12:11802753..11802834,+!p2@ETV6!1.13!60.58!ETV6;;chrX:129244430..129244442,-!p5@ELF4!1.13!12.64!ELF4;;chr13:72441074..72441172,-!p2@DACH1!1.12!12.16!DACH1;;chr19:45971246..45971265,+!p1@FOSB!1.11!220.84!FOSB;;chr4:106068026..106068084,+!p1@TET2!1.11!107.80!TET2;;chr19:50432132..50432217,+!p2@ATF5!1.11!14.07!ATF5;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000784;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11228-116C4
 |is_a=EFO:0002091;;FF:0000044;;FF:0000045
 |is_obsolete=
+|library_id=CNhs10857
+|library_id_phase_based=2:CNhs10857
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11228
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11228
 |name=Dendritic Cells - plasmacytoid, donor1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10857,LSID702,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=116
 |rna_catalog_number=3H100-72-5
@@ Line 59: / Line 79: @@
 |rna_weight_ug=1
 |sample_age=22
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NANOG{mouse}:2.59293666462;AIRE:2.11649186387;DMAP1_NCOR{1,2}_SMARC:1.98223898767;CREB1:1.86680356647;SPI1:1.83806444278;NFKB1_REL_RELA:1.83101082671;ATF5_CREB3:1.7227099311;LMO2:1.65446974895;FOXD3:1.64999042637;PAX2:1.62271947354;RUNX1..3:1.61654226052;SPIB:1.52165480371;NFIL3:1.4321359863;TGIF1:1.38557910372;RFX2..5_RFXANK_RFXAP:1.36680007886;ELF1,2,4:1.35569803058;ETS1,2:1.32741005656;ATF4:1.31369779961;FOXN1:1.30185852288;PAX6:1.26052997707;EN1,2:1.18073867565;PAX3,7:1.0887795343;FOX{F1,F2,J1}:0.9941953554;NANOG:0.946786754164;FOXP1:0.934836570403;BREu{core}:0.893076492554;BPTF:0.887469108931;MYFfamily:0.833542923053;FOXQ1:0.815475296076;IRF1,2:0.787104938434;FOXL1:0.773870010768;NHLH1,2:0.746103898795;HMX1:0.735707261405;FOXP3:0.718978216789;RORA:0.712380032544;HIF1A:0.704020910943;TLX2:0.702293455124;CRX:0.692494711833;ZBTB16:0.673628163211;POU2F1..3:0.673382068177;MYB:0.64453026773;ATF6:0.630285616616;NKX6-1,2:0.599275008577;FOXO1,3,4:0.531027354386;MYOD1:0.527813038006;PDX1:0.460197521403;SREBF1,2:0.450776927804;HOXA9_MEIS1:0.439889121369;IRF7:0.425248040245;RXRA_VDR{dimer}:0.391444566259;BACH2:0.389598237525;OCT4_SOX2{dimer}:0.387404634733;FOS_FOS{B,L1}_JUN{B,D}:0.3870731574;FOXA2:0.376216028299;ZEB1:0.372997103145;HBP1_HMGB_SSRP1_UBTF:0.368837072146;ELK1,4_GABP{A,B1}:0.331487293754;FOX{D1,D2}:0.294614906206;HMGA1,2:0.278842588491;FOSL2:0.269129502797;NR6A1:0.243522590263;SMAD1..7,9:0.229218829213;CDX1,2,4:0.216474726908;NFE2:0.188971110413;IKZF2:0.188220844099;MAFB:0.172089250482;XBP1:0.151106551876;MEF2{A,B,C,D}:0.142590119228;PAX4:0.141118908807;T:0.118308317972;ATF2:0.116152146898;EP300:0.0953385921783;POU5F1:0.0948109145732;JUN:0.0919721877687;TFAP4:0.0656294285041;CEBPA,B_DDIT3:0.0503868739358;HLF:0.0474202310157;PITX1..3:0.0439912489928;ZNF148:0.0419512262487;ALX1:0.0279708131785;FOX{I1,J2}:0.00508496125042;NKX2-2,8:-0.000379986178322;CUX2:-0.0302221295155;SNAI1..3:-0.0510660492921;TOPORS:-0.0545255328624;SOX5:-0.0868325775202;ESR1:-0.0950718206986;EVI1:-0.0963205559694;EGR1..3:-0.100839049806;CDC5L:-0.13044401703;ESRRA:-0.141865771721;GATA4:-0.147146399873;STAT5{A,B}:-0.160233214037;GATA6:-0.17822760586;TAL1_TCF{3,4,12}:-0.181424667771;RBPJ:-0.193390958645;TEF:-0.210379618961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.219281682176;HAND1,2:-0.24152114603;NR5A1,2:-0.242361637043;SOX2:-0.251875300332;ZNF238:-0.252192568255;NFATC1..3:-0.274747785422;TFAP2{A,C}:-0.291751012725;ALX4:-0.301291602195;STAT1,3:-0.331826560545;ZFP161:-0.335214474273;GLI1..3:-0.33677935804;SOX{8,9,10}:-0.336869393088;NFY{A,B,C}:-0.345972602063;HNF4A_NR2F1,2:-0.366085373516;PRRX1,2:-0.388600303451;POU1F1:-0.389586747843;DBP:-0.393039268641;ARID5B:-0.428493625059;YY1:-0.443471265477;HNF1A:-0.447448818961;PAX8:-0.463940143183;MED-1{core}:-0.472956295865;NFE2L2:-0.473675785623;STAT2,4,6:-0.500451410462;bHLH_family:-0.514406783646;NKX2-3_NKX2-5:-0.526622542207;POU3F1..4:-0.549566684004;LHX3,4:-0.550515834317;E2F1..5:-0.568200878953;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.590605796192;PPARG:-0.60554860216;NKX3-1:-0.613205631647;AR:-0.615564091535;SOX17:-0.623925925502;RXR{A,B,G}:-0.64235019668;AHR_ARNT_ARNT2:-0.644586975618;REST:-0.645444204811;MZF1:-0.654589809414;NRF1:-0.656641122792;HOX{A5,B5}:-0.679759693179;PATZ1:-0.709514308888;ZNF384:-0.724438031122;SRF:-0.728580187004;ZNF143:-0.745963844023;PRDM1:-0.772055924083;SP1:-0.773474472092;MTE{core}:-0.783108060107;HOX{A4,D4}:-0.784269499883;HSF1,2:-0.7988099112;HES1:-0.801240167424;TFCP2:-0.817628344983;POU6F1:-0.855447753886;HOX{A6,A7,B6,B7}:-0.871789313679;TBP:-0.875765372326;MAZ:-0.88191355337;RREB1:-0.911574219091;LEF1_TCF7_TCF7L1,2:-0.912562284868;ZBTB6:-0.917470090182;RFX1:-0.919876324234;MYBL2:-0.936983923983;NR1H4:-0.942338344283;NFE2L1:-0.961161158424;HIC1:-0.979751146507;SPZ1:-1.02400253658;NFIX:-1.03896718381;TFAP2B:-1.05859383371;MTF1:-1.09096982483;NKX3-2:-1.09586822691;GTF2A1,2:-1.09728135771;TP53:-1.11499253401;PAX5:-1.18595246675;NKX2-1,4:-1.19239194166;ONECUT1,2:-1.23469210373;NR3C1:-1.23902541769;GZF1:-1.24163043376;VSX1,2:-1.25415652664;ADNP_IRX_SIX_ZHX:-1.26287663915;GFI1:-1.29298612795;TEAD1:-1.42271706795;GCM1,2:-1.42323150152;ZNF423:-1.43454428518;UFEwm:-1.45931027949;TBX4,5:-1.48923312635;TFDP1:-1.49025316483;EBF1:-1.50109371565;GFI1B:-1.55699280433;XCPE1{core}:-1.56131407293;GTF2I:-1.56995988281;PBX1:-1.6319686754;ZIC1..3:-1.6482229389;IKZF1:-1.66426045745;FOXM1:-1.70335368566;KLF4:-1.96706258211;TLX1..3_NFIC{dimer}:-2.09613758378;PAX1,9:-2.39827189994
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11228-116C4;search_select_hide=table117:FF:11228-116C4
 }}

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FF:11228-116C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0