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(Created page with "{{f5samples |id=FF:11239-116D6 |name=Smooth Muscle Cells - Colonic, donor1 |sample_id=11239 |rna_tube_id=116D6 |rna_box=116 |rna_position=D6 |sample_cell_lot=N/A |samp...")
 
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{{f5samples
{{f5samples
|id=FF:11239-116D6
|DRA_sample_Accession=CAGE@SAMD00004783
|name=Smooth Muscle Cells - Colonic, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004783
|sample_id=11239
|accession_numbers=CAGE;DRX008483;DRR009355;DRZ000780;DRZ002165;DRZ012130;DRZ013515
|rna_tube_id=116D6
|accession_numbers_RNASeq=sRNA-Seq;DRX037218;DRR041584;DRZ007226
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383
|rna_position=D6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=1830.00000
|rna_catalog_number=SC2945
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=colon
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.38300
|sample_note=
|profile_hcage=CNhs10868,LSID702,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10013,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002504,CL:1000280
|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000119,UBERON:0000160,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001155,UBERON:0001555,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004290,UBERON:0004921,UBERON:0005291,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000180,FF:0000181
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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Line 67: Line 43:
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|fonse_treatment_closure=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg38.nobarcode.ctss.bed.gz
|id=FF:11239-116D6
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|is_obsolete=
|library_id=CNhs10868
|library_id_phase_based=2:CNhs10868
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11239
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTAGAG.11239
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11239
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTAGAG.11239
|name=Smooth Muscle Cells - Colonic, donor1
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|rna_box=116
|rna_catalog_number=SC2945
|rna_concentration=0.383
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1830
|rna_od260/230=
|rna_od260/280=
|rna_position=D6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116D6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.GTAGAG
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.49921808897884e-233!GO:0005737;cytoplasm;1.51476357733945e-203!GO:0043226;organelle;3.79602837734601e-179!GO:0043229;intracellular organelle;7.44870182031608e-179!GO:0043231;intracellular membrane-bound organelle;5.79190276560538e-178!GO:0043227;membrane-bound organelle;1.22940572133058e-177!GO:0044444;cytoplasmic part;4.08543997722241e-151!GO:0044422;organelle part;2.31742596855634e-143!GO:0044446;intracellular organelle part;7.92363229934242e-142!GO:0032991;macromolecular complex;1.11916802291001e-96!GO:0030529;ribonucleoprotein complex;1.43097993521549e-85!GO:0044238;primary metabolic process;9.04647374697207e-85!GO:0044237;cellular metabolic process;1.54824974172476e-84!GO:0043170;macromolecule metabolic process;3.01432311491231e-73!GO:0005739;mitochondrion;1.11752698902305e-72!GO:0005515;protein binding;9.35918861471166e-72!GO:0043233;organelle lumen;5.98583275926938e-70!GO:0031974;membrane-enclosed lumen;5.98583275926938e-70!GO:0044428;nuclear part;2.9170448579446e-65!GO:0003723;RNA binding;6.95795456237211e-65!GO:0005634;nucleus;3.54615785644437e-58!GO:0031090;organelle membrane;2.35234499507008e-55!GO:0005840;ribosome;6.01460916260753e-54!GO:0019538;protein metabolic process;2.98874226175354e-51!GO:0006412;translation;1.48223385630393e-49!GO:0043234;protein complex;1.73958587701032e-48!GO:0016043;cellular component organization and biogenesis;2.48185298144694e-48!GO:0044429;mitochondrial part;2.48185298144694e-48!GO:0003735;structural constituent of ribosome;1.12856323741428e-47!GO:0009058;biosynthetic process;6.44519258410441e-47!GO:0044260;cellular macromolecule metabolic process;4.77017158227052e-46!GO:0044267;cellular protein metabolic process;6.45200669433402e-45!GO:0006396;RNA processing;7.92099691083148e-44!GO:0031967;organelle envelope;1.33460561763953e-43!GO:0015031;protein transport;2.42489131096087e-43!GO:0031975;envelope;2.69216597676651e-43!GO:0033036;macromolecule localization;6.74831362240336e-43!GO:0044249;cellular biosynthetic process;1.58290600463292e-41!GO:0033279;ribosomal subunit;2.73580265817354e-41!GO:0005829;cytosol;5.30774310919081e-40!GO:0008104;protein localization;1.04809796405526e-39!GO:0045184;establishment of protein localization;1.09908000353422e-39!GO:0009059;macromolecule biosynthetic process;1.60464199564161e-39!GO:0031981;nuclear lumen;2.23138887574719e-38!GO:0043283;biopolymer metabolic process;2.93272326867158e-35!GO:0046907;intracellular transport;3.84893693452461e-35!GO:0016071;mRNA metabolic process;4.87549434109143e-35!GO:0008380;RNA splicing;5.600718161119e-33!GO:0065003;macromolecular complex assembly;5.69710059704702e-32!GO:0010467;gene expression;6.20684442898546e-32!GO:0005740;mitochondrial envelope;2.41190130099805e-31!GO:0006397;mRNA processing;1.05812992111905e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.25088004586505e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.11023826123455e-30!GO:0031966;mitochondrial membrane;1.12324187047066e-29!GO:0043228;non-membrane-bound organelle;1.69475906353495e-29!GO:0043232;intracellular non-membrane-bound organelle;1.69475906353495e-29!GO:0006996;organelle organization and biogenesis;2.40865349095675e-29!GO:0019866;organelle inner membrane;3.88225550276896e-29!GO:0006886;intracellular protein transport;4.24345567219174e-29!GO:0022607;cellular component assembly;1.33867459112787e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.32638344984809e-28!GO:0005743;mitochondrial inner membrane;1.69330020871888e-27!GO:0044445;cytosolic part;4.25084939818177e-24!GO:0012505;endomembrane system;6.5818123534809e-24!GO:0006119;oxidative phosphorylation;1.10657415226927e-23!GO:0005783;endoplasmic reticulum;1.88676483579925e-23!GO:0005654;nucleoplasm;2.24903002536741e-23!GO:0005681;spliceosome;4.79980933320983e-23!GO:0051649;establishment of cellular localization;4.33402770725563e-22!GO:0006259;DNA metabolic process;4.33478558152985e-22!GO:0051641;cellular localization;4.45318343834914e-22!GO:0015935;small ribosomal subunit;1.40693609950813e-21!GO:0006457;protein folding;1.61609723781237e-21!GO:0044455;mitochondrial membrane part;2.55010359247118e-21!GO:0015934;large ribosomal subunit;8.88957137571973e-21!GO:0031980;mitochondrial lumen;2.3181543142571e-20!GO:0005759;mitochondrial matrix;2.3181543142571e-20!GO:0000166;nucleotide binding;2.45813814041371e-20!GO:0048770;pigment granule;5.1002430654233e-20!GO:0042470;melanosome;5.1002430654233e-20!GO:0007049;cell cycle;1.13710380422335e-18!GO:0044451;nucleoplasm part;1.1544087721989e-18!GO:0044432;endoplasmic reticulum part;1.34093933640878e-18!GO:0016462;pyrophosphatase activity;2.62896389886602e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.76924671122971e-18!GO:0005746;mitochondrial respiratory chain;3.69400150265001e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;4.1727641718095e-18!GO:0022618;protein-RNA complex assembly;6.12977778256125e-18!GO:0005794;Golgi apparatus;1.75823247436589e-17!GO:0017111;nucleoside-triphosphatase activity;2.01322672745215e-17!GO:0051186;cofactor metabolic process;2.15684174939169e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.97824851649651e-17!GO:0016874;ligase activity;3.21039446146413e-17!GO:0043285;biopolymer catabolic process;1.44946904307852e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.12329155703484e-16!GO:0044265;cellular macromolecule catabolic process;3.52298732671759e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.98620817663963e-16!GO:0019941;modification-dependent protein catabolic process;4.42153144896059e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.42153144896059e-16!GO:0044257;cellular protein catabolic process;6.37340452258441e-16!GO:0005761;mitochondrial ribosome;7.58696246237943e-16!GO:0000313;organellar ribosome;7.58696246237943e-16!GO:0006511;ubiquitin-dependent protein catabolic process;8.41072804016443e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.81145911605079e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.01081693909841e-16!GO:0003954;NADH dehydrogenase activity;9.01081693909841e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.01081693909841e-16!GO:0006512;ubiquitin cycle;1.20696105533768e-15!GO:0030163;protein catabolic process;1.89447872344567e-15!GO:0044248;cellular catabolic process;2.01263049908664e-15!GO:0005730;nucleolus;2.12136778292917e-15!GO:0009057;macromolecule catabolic process;2.2136815426691e-15!GO:0008135;translation factor activity, nucleic acid binding;3.40286462842747e-15!GO:0003676;nucleic acid binding;3.58053787668911e-15!GO:0048193;Golgi vesicle transport;3.59437484579829e-15!GO:0006974;response to DNA damage stimulus;9.44489144429456e-15!GO:0006605;protein targeting;1.39022016608912e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.99760253062283e-14!GO:0032553;ribonucleotide binding;1.99760253062283e-14!GO:0032555;purine ribonucleotide binding;1.99760253062283e-14!GO:0051082;unfolded protein binding;2.37478308004283e-14!GO:0017076;purine nucleotide binding;2.60419566545256e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.85911250626378e-14!GO:0022402;cell cycle process;4.98529758176481e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.06833690993056e-14!GO:0042773;ATP synthesis coupled electron transport;5.06833690993056e-14!GO:0006732;coenzyme metabolic process;6.56188327524002e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.56188327524002e-14!GO:0045271;respiratory chain complex I;6.56188327524002e-14!GO:0005747;mitochondrial respiratory chain complex I;6.56188327524002e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.00513740548246e-13!GO:0008134;transcription factor binding;2.74581366665463e-13!GO:0000278;mitotic cell cycle;2.74581366665463e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.55178992042253e-13!GO:0016192;vesicle-mediated transport;4.44618554865265e-13!GO:0005635;nuclear envelope;4.67051919868223e-13!GO:0005789;endoplasmic reticulum membrane;1.27659416271951e-12!GO:0009055;electron carrier activity;1.73300040625681e-12!GO:0003743;translation initiation factor activity;1.95330994334904e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.00726779742968e-12!GO:0000375;RNA splicing, via transesterification reactions;3.00726779742968e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.00726779742968e-12!GO:0005793;ER-Golgi intermediate compartment;6.43237428384556e-12!GO:0005524;ATP binding;7.25317201271687e-12!GO:0032559;adenyl ribonucleotide binding;7.56152095275742e-12!GO:0009259;ribonucleotide metabolic process;9.42293041298522e-12!GO:0030554;adenyl nucleotide binding;1.37459862925506e-11!GO:0006413;translational initiation;1.68143784945799e-11!GO:0031965;nuclear membrane;1.82864521139727e-11!GO:0043412;biopolymer modification;2.54961047956575e-11!GO:0006281;DNA repair;2.77576361078669e-11!GO:0016070;RNA metabolic process;2.9274101124277e-11!GO:0009719;response to endogenous stimulus;3.64601172916065e-11!GO:0042254;ribosome biogenesis and assembly;4.12668486569713e-11!GO:0006163;purine nucleotide metabolic process;4.64867275441643e-11!GO:0009150;purine ribonucleotide metabolic process;8.40245145955397e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.45050161939188e-10!GO:0006446;regulation of translational initiation;1.78693279354443e-10!GO:0009260;ribonucleotide biosynthetic process;2.12198545180996e-10!GO:0006464;protein modification process;2.51933192284896e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.57147819639267e-10!GO:0016604;nuclear body;2.57320556572082e-10!GO:0006164;purine nucleotide biosynthetic process;2.69645427046281e-10!GO:0008565;protein transporter activity;3.47567560341363e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.6958348658079e-10!GO:0044453;nuclear membrane part;4.81160868261948e-10!GO:0005694;chromosome;5.59601622666856e-10!GO:0009199;ribonucleoside triphosphate metabolic process;6.14057008084229e-10!GO:0012501;programmed cell death;7.00997955792219e-10!GO:0009141;nucleoside triphosphate metabolic process;7.40407918755188e-10!GO:0016491;oxidoreductase activity;7.46956480846335e-10!GO:0006913;nucleocytoplasmic transport;7.62990452500164e-10!GO:0009056;catabolic process;8.43425203249124e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.03853265265957e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.03853265265957e-09!GO:0000087;M phase of mitotic cell cycle;1.19860182595205e-09!GO:0006915;apoptosis;1.19860182595205e-09!GO:0008639;small protein conjugating enzyme activity;1.31959460041296e-09!GO:0042623;ATPase activity, coupled;1.62643267173344e-09!GO:0051169;nuclear transport;1.78068119588301e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.78255964082495e-09!GO:0009060;aerobic respiration;1.80047086500869e-09!GO:0006461;protein complex assembly;1.80047086500869e-09!GO:0007067;mitosis;1.94899946548341e-09!GO:0019787;small conjugating protein ligase activity;2.23386079722526e-09!GO:0004842;ubiquitin-protein ligase activity;2.2887459315825e-09!GO:0051301;cell division;2.69794943089356e-09!GO:0006399;tRNA metabolic process;3.41491260903372e-09!GO:0000074;regulation of progression through cell cycle;3.41491260903372e-09!GO:0051726;regulation of cell cycle;3.73884481507774e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.7585700630745e-09!GO:0009117;nucleotide metabolic process;3.85222281934577e-09!GO:0045333;cellular respiration;4.08678000385506e-09!GO:0044427;chromosomal part;4.57848107622378e-09!GO:0016887;ATPase activity;4.6928604770627e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.06496916247539e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.06496916247539e-09!GO:0051276;chromosome organization and biogenesis;5.0842411965733e-09!GO:0008219;cell death;5.49935366104187e-09!GO:0016265;death;5.49935366104187e-09!GO:0004386;helicase activity;5.61648901079257e-09!GO:0015986;ATP synthesis coupled proton transport;5.90621300372003e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.90621300372003e-09!GO:0022403;cell cycle phase;6.42407972480886e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.50533862720664e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.50533862720664e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.6062311236306e-09!GO:0043687;post-translational protein modification;1.00438780017635e-08!GO:0003712;transcription cofactor activity;1.14915596771408e-08!GO:0005788;endoplasmic reticulum lumen;1.41873247890089e-08!GO:0051188;cofactor biosynthetic process;1.46324373008177e-08!GO:0016607;nuclear speck;1.58823975429467e-08!GO:0016881;acid-amino acid ligase activity;1.88787628761751e-08!GO:0046034;ATP metabolic process;1.971676837e-08!GO:0065004;protein-DNA complex assembly;2.09229551810519e-08!GO:0006260;DNA replication;2.12428646336537e-08!GO:0019829;cation-transporting ATPase activity;2.66293209322012e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.2910302210133e-08!GO:0017038;protein import;3.38403800839564e-08!GO:0065002;intracellular protein transport across a membrane;3.67650361795717e-08!GO:0008026;ATP-dependent helicase activity;3.71673990869288e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.96940510817532e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.02691183754144e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.02691183754144e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.02691183754144e-08!GO:0005768;endosome;4.05636928298238e-08!GO:0006099;tricarboxylic acid cycle;4.59956797497151e-08!GO:0046356;acetyl-CoA catabolic process;4.59956797497151e-08!GO:0048523;negative regulation of cellular process;4.69874725553311e-08!GO:0043038;amino acid activation;6.12152526702225e-08!GO:0006418;tRNA aminoacylation for protein translation;6.12152526702225e-08!GO:0043039;tRNA aminoacylation;6.12152526702225e-08!GO:0030120;vesicle coat;7.09744025434099e-08!GO:0030662;coated vesicle membrane;7.09744025434099e-08!GO:0005643;nuclear pore;1.1009837380909e-07!GO:0006323;DNA packaging;1.14719597980659e-07!GO:0051187;cofactor catabolic process;1.30137728404434e-07!GO:0007005;mitochondrion organization and biogenesis;1.355824338081e-07!GO:0044431;Golgi apparatus part;1.40001156432151e-07!GO:0006754;ATP biosynthetic process;1.5323365252373e-07!GO:0006753;nucleoside phosphate metabolic process;1.5323365252373e-07!GO:0048475;coated membrane;1.65783588580222e-07!GO:0030117;membrane coat;1.65783588580222e-07!GO:0009109;coenzyme catabolic process;1.72228155138666e-07!GO:0006084;acetyl-CoA metabolic process;1.76381331822348e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.8841029628949e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.90865476025023e-07!GO:0051246;regulation of protein metabolic process;3.55683843663111e-07!GO:0006364;rRNA processing;3.8000638214774e-07!GO:0009108;coenzyme biosynthetic process;4.50325543630913e-07!GO:0016853;isomerase activity;4.70548809186764e-07!GO:0006091;generation of precursor metabolites and energy;4.7822814573695e-07!GO:0015630;microtubule cytoskeleton;5.41320476085613e-07!GO:0003924;GTPase activity;5.41320476085613e-07!GO:0000279;M phase;5.74987044934746e-07!GO:0006333;chromatin assembly or disassembly;8.04089948220157e-07!GO:0046930;pore complex;8.34328174659608e-07!GO:0050657;nucleic acid transport;8.48313098317153e-07!GO:0051236;establishment of RNA localization;8.48313098317153e-07!GO:0050658;RNA transport;8.48313098317153e-07!GO:0016072;rRNA metabolic process;8.67427863118226e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.80137252612531e-07!GO:0006403;RNA localization;8.80151055939606e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04384570041716e-06!GO:0048519;negative regulation of biological process;1.29979907107551e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.39776425823624e-06!GO:0031252;leading edge;1.67018529850682e-06!GO:0016859;cis-trans isomerase activity;1.70279459741006e-06!GO:0016740;transferase activity;1.7342399418011e-06!GO:0043069;negative regulation of programmed cell death;1.75955788854951e-06!GO:0000785;chromatin;1.75955788854951e-06!GO:0031988;membrane-bound vesicle;1.80025893042987e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.9007866441587e-06!GO:0005798;Golgi-associated vesicle;1.95745579717418e-06!GO:0003697;single-stranded DNA binding;2.02833262360699e-06!GO:0006366;transcription from RNA polymerase II promoter;2.45202857981581e-06!GO:0042981;regulation of apoptosis;2.47175958538051e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.51709396714369e-06!GO:0045259;proton-transporting ATP synthase complex;2.73763668131307e-06!GO:0043067;regulation of programmed cell death;2.84983976862914e-06!GO:0043066;negative regulation of apoptosis;2.87664217830134e-06!GO:0005770;late endosome;2.9662578419748e-06!GO:0005773;vacuole;2.96793402066617e-06!GO:0006752;group transfer coenzyme metabolic process;3.05524549838038e-06!GO:0016787;hydrolase activity;3.05524549838038e-06!GO:0032446;protein modification by small protein conjugation;3.22557784138943e-06!GO:0016567;protein ubiquitination;4.35399361267844e-06!GO:0008654;phospholipid biosynthetic process;4.50083426432864e-06!GO:0004298;threonine endopeptidase activity;4.5160732670507e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.81941501002138e-06!GO:0005762;mitochondrial large ribosomal subunit;5.08157392831025e-06!GO:0000315;organellar large ribosomal subunit;5.08157392831025e-06!GO:0006613;cotranslational protein targeting to membrane;5.42094906083025e-06!GO:0043566;structure-specific DNA binding;5.53896910083347e-06!GO:0031982;vesicle;5.55988038672103e-06!GO:0000245;spliceosome assembly;5.62287874618883e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.62538636660315e-06!GO:0000139;Golgi membrane;5.62538636660315e-06!GO:0051170;nuclear import;5.67116621680178e-06!GO:0006334;nucleosome assembly;5.67116621680178e-06!GO:0031410;cytoplasmic vesicle;6.21473814291235e-06!GO:0016126;sterol biosynthetic process;6.21473814291235e-06!GO:0050794;regulation of cellular process;6.99994426598102e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.6516564912707e-06!GO:0000151;ubiquitin ligase complex;8.6878033868145e-06!GO:0005813;centrosome;9.84605006139104e-06!GO:0044440;endosomal part;1.04990140309214e-05!GO:0010008;endosome membrane;1.04990140309214e-05!GO:0006916;anti-apoptosis;1.13864513052512e-05!GO:0016779;nucleotidyltransferase activity;1.20159785067137e-05!GO:0006606;protein import into nucleus;1.37284207716144e-05!GO:0005791;rough endoplasmic reticulum;1.42624100628408e-05!GO:0045454;cell redox homeostasis;1.51781175156182e-05!GO:0030133;transport vesicle;1.70426669813531e-05!GO:0016310;phosphorylation;1.80285793575801e-05!GO:0000323;lytic vacuole;1.87503208862225e-05!GO:0005764;lysosome;1.87503208862225e-05!GO:0006793;phosphorus metabolic process;1.87503208862225e-05!GO:0006796;phosphate metabolic process;1.87503208862225e-05!GO:0031497;chromatin assembly;2.0193921598e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.1105502360018e-05!GO:0003724;RNA helicase activity;2.48177840262157e-05!GO:0043623;cellular protein complex assembly;2.62702239103851e-05!GO:0051028;mRNA transport;2.67312221486249e-05!GO:0008610;lipid biosynthetic process;2.76188164236061e-05!GO:0031968;organelle outer membrane;2.79702973145077e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.9406080083322e-05!GO:0005815;microtubule organizing center;3.01641228431396e-05!GO:0045786;negative regulation of progression through cell cycle;3.0368167719451e-05!GO:0030867;rough endoplasmic reticulum membrane;3.5016239862079e-05!GO:0005667;transcription factor complex;3.56606841441866e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.66420511231206e-05!GO:0009165;nucleotide biosynthetic process;3.66420511231206e-05!GO:0051789;response to protein stimulus;3.97749820096204e-05!GO:0006986;response to unfolded protein;3.97749820096204e-05!GO:0019867;outer membrane;4.68885687880479e-05!GO:0008361;regulation of cell size;4.7902218437083e-05!GO:0019843;rRNA binding;5.21948461464822e-05!GO:0005769;early endosome;5.21948461464822e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;6.35921889820626e-05!GO:0000314;organellar small ribosomal subunit;7.03258430740793e-05!GO:0005763;mitochondrial small ribosomal subunit;7.03258430740793e-05!GO:0005525;GTP binding;7.07599342401638e-05!GO:0043021;ribonucleoprotein binding;7.8547182178004e-05!GO:0016049;cell growth;8.94995765835087e-05!GO:0051427;hormone receptor binding;9.22104245601976e-05!GO:0006695;cholesterol biosynthetic process;0.000102958515575922!GO:0003714;transcription corepressor activity;0.000117547586001379!GO:0006612;protein targeting to membrane;0.000133985056729718!GO:0050789;regulation of biological process;0.000165501508252053!GO:0007010;cytoskeleton organization and biogenesis;0.000172184888081098!GO:0016568;chromatin modification;0.000178122998065774!GO:0005819;spindle;0.000178532534474017!GO:0005741;mitochondrial outer membrane;0.000182047086945691!GO:0051329;interphase of mitotic cell cycle;0.000182470208067794!GO:0031324;negative regulation of cellular metabolic process;0.000190152977815459!GO:0035257;nuclear hormone receptor binding;0.000190595484460408!GO:0030036;actin cytoskeleton organization and biogenesis;0.000191117973072251!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000206853985212443!GO:0005905;coated pit;0.000220261356743354!GO:0003713;transcription coactivator activity;0.000223475910646405!GO:0033116;ER-Golgi intermediate compartment membrane;0.000248657533617557!GO:0005048;signal sequence binding;0.000259389317916195!GO:0001558;regulation of cell growth;0.000272994774108655!GO:0032561;guanyl ribonucleotide binding;0.000291193144262389!GO:0019001;guanyl nucleotide binding;0.000291193144262389!GO:0004576;oligosaccharyl transferase activity;0.000311420464187435!GO:0030663;COPI coated vesicle membrane;0.000329627824988077!GO:0030126;COPI vesicle coat;0.000329627824988077!GO:0008250;oligosaccharyl transferase complex;0.000335600310882721!GO:0005885;Arp2/3 protein complex;0.00033611360662881!GO:0019899;enzyme binding;0.000382502229283873!GO:0046474;glycerophospholipid biosynthetic process;0.000383871777921192!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000425742329191761!GO:0016564;transcription repressor activity;0.000461475791307665!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000474081250932768!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000494399165058007!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00050275240946482!GO:0003899;DNA-directed RNA polymerase activity;0.000539721067608377!GO:0008186;RNA-dependent ATPase activity;0.000591845936770395!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000591845936770395!GO:0006261;DNA-dependent DNA replication;0.000631582129873656!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000687389665791144!GO:0051325;interphase;0.000705481959317065!GO:0006891;intra-Golgi vesicle-mediated transport;0.000737591627063002!GO:0051920;peroxiredoxin activity;0.000742207269137183!GO:0043681;protein import into mitochondrion;0.000764445982894495!GO:0006626;protein targeting to mitochondrion;0.000786065569868718!GO:0044262;cellular carbohydrate metabolic process;0.000813218425346487!GO:0016363;nuclear matrix;0.000860116334670577!GO:0030029;actin filament-based process;0.000887739430512416!GO:0007243;protein kinase cascade;0.000932160170610956!GO:0018196;peptidyl-asparagine modification;0.000942197925158541!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000942197925158541!GO:0006839;mitochondrial transport;0.000957765008831074!GO:0007051;spindle organization and biogenesis;0.0010054843395858!GO:0046467;membrane lipid biosynthetic process;0.0010203498585217!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102389390340095!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102389390340095!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102389390340095!GO:0009892;negative regulation of metabolic process;0.00103978582315019!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00107696588542969!GO:0016563;transcription activator activity;0.00119851074418496!GO:0030137;COPI-coated vesicle;0.00123233307240109!GO:0001726;ruffle;0.00123477998614194!GO:0042802;identical protein binding;0.00132169288692304!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00133002922074418!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00137409273750058!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00145914501823345!GO:0030027;lamellipodium;0.00155108261040592!GO:0004004;ATP-dependent RNA helicase activity;0.00161008817791706!GO:0006979;response to oxidative stress;0.00169220434524206!GO:0048500;signal recognition particle;0.00170008665658571!GO:0015992;proton transport;0.00181431637457936!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00185537721061327!GO:0015002;heme-copper terminal oxidase activity;0.00185537721061327!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00185537721061327!GO:0004129;cytochrome-c oxidase activity;0.00185537721061327!GO:0019752;carboxylic acid metabolic process;0.00192013533110679!GO:0006950;response to stress;0.00194325044689896!GO:0051168;nuclear export;0.00195730166607126!GO:0006818;hydrogen transport;0.00206976378864544!GO:0006082;organic acid metabolic process;0.00207460055917521!GO:0000075;cell cycle checkpoint;0.00225085705060872!GO:0046489;phosphoinositide biosynthetic process;0.00228407476426887!GO:0031072;heat shock protein binding;0.00228667369925178!GO:0016125;sterol metabolic process;0.00230284374700567!GO:0008092;cytoskeletal protein binding;0.00261582907983279!GO:0003690;double-stranded DNA binding;0.00261776830959141!GO:0008047;enzyme activator activity;0.0028224014293002!GO:0046483;heterocycle metabolic process;0.00283238793175945!GO:0016044;membrane organization and biogenesis;0.00293830245852799!GO:0009112;nucleobase metabolic process;0.00295561817842772!GO:0000775;chromosome, pericentric region;0.0030260081525153!GO:0048522;positive regulation of cellular process;0.0030260081525153!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0030260081525153!GO:0015399;primary active transmembrane transporter activity;0.0030260081525153!GO:0004177;aminopeptidase activity;0.0030260081525153!GO:0048471;perinuclear region of cytoplasm;0.00308604279779436!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00311514441053536!GO:0051252;regulation of RNA metabolic process;0.00312597398064075!GO:0007006;mitochondrial membrane organization and biogenesis;0.00314536094685672!GO:0051052;regulation of DNA metabolic process;0.00322493346500428!GO:0030658;transport vesicle membrane;0.0032487907730328!GO:0030176;integral to endoplasmic reticulum membrane;0.00326648095247907!GO:0006414;translational elongation;0.00327591275281263!GO:0000059;protein import into nucleus, docking;0.00338681210180225!GO:0003684;damaged DNA binding;0.00344711913359134!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00353475860769252!GO:0045047;protein targeting to ER;0.00353475860769252!GO:0022890;inorganic cation transmembrane transporter activity;0.00358802885759651!GO:0008180;signalosome;0.00366965693923626!GO:0006383;transcription from RNA polymerase III promoter;0.00369777506926934!GO:0030659;cytoplasmic vesicle membrane;0.00370065587492948!GO:0050662;coenzyme binding;0.00377687352415942!GO:0043284;biopolymer biosynthetic process;0.0038205277335727!GO:0030134;ER to Golgi transport vesicle;0.00383703761812697!GO:0006302;double-strand break repair;0.00404625785782878!GO:0016481;negative regulation of transcription;0.00418284135861101!GO:0008312;7S RNA binding;0.00433858216775257!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00441338141316043!GO:0035258;steroid hormone receptor binding;0.00443760634310278!GO:0031902;late endosome membrane;0.00452334081078058!GO:0003729;mRNA binding;0.00468478744774193!GO:0005581;collagen;0.00469645390506631!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00473600441644069!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00482687218722848!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00482687218722848!GO:0043488;regulation of mRNA stability;0.00485698515399956!GO:0043487;regulation of RNA stability;0.00485698515399956!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00514018389609597!GO:0051287;NAD binding;0.00514587173208403!GO:0008139;nuclear localization sequence binding;0.00534676503863085!GO:0000776;kinetochore;0.00570508740481715!GO:0005869;dynactin complex;0.00593442184665159!GO:0030118;clathrin coat;0.00593500737921637!GO:0065009;regulation of a molecular function;0.00593704478865278!GO:0000786;nucleosome;0.00593704478865278!GO:0016408;C-acyltransferase activity;0.00596426559104524!GO:0030132;clathrin coat of coated pit;0.00607437433009326!GO:0030127;COPII vesicle coat;0.0060994582263861!GO:0012507;ER to Golgi transport vesicle membrane;0.0060994582263861!GO:0008632;apoptotic program;0.00614389307400097!GO:0030880;RNA polymerase complex;0.00617655575253684!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00624178876052101!GO:0048487;beta-tubulin binding;0.00630610657338882!GO:0030521;androgen receptor signaling pathway;0.00633642511096197!GO:0003678;DNA helicase activity;0.00641021791166978!GO:0005684;U2-dependent spliceosome;0.00646632120781225!GO:0008033;tRNA processing;0.00677895573693821!GO:0006310;DNA recombination;0.00677895573693821!GO:0006352;transcription initiation;0.00677895573693821!GO:0044452;nucleolar part;0.00685426189188296!GO:0044433;cytoplasmic vesicle part;0.00685658589977211!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00688612725268026!GO:0051087;chaperone binding;0.00688612725268026!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00692411139349734!GO:0016251;general RNA polymerase II transcription factor activity;0.00701131938579885!GO:0006118;electron transport;0.00763645386332796!GO:0015631;tubulin binding;0.00764988216891764!GO:0008094;DNA-dependent ATPase activity;0.00786755379360902!GO:0006520;amino acid metabolic process;0.00816682591989394!GO:0009116;nucleoside metabolic process;0.00861653065102584!GO:0031124;mRNA 3'-end processing;0.00871830813003699!GO:0040008;regulation of growth;0.00871830813003699!GO:0016272;prefoldin complex;0.00873705911373911!GO:0007050;cell cycle arrest;0.00882326675690974!GO:0005657;replication fork;0.00889879488624531!GO:0000082;G1/S transition of mitotic cell cycle;0.00906724335543547!GO:0030660;Golgi-associated vesicle membrane;0.0093462883451036!GO:0005096;GTPase activator activity;0.0093486175401354!GO:0012506;vesicle membrane;0.00943474481898275!GO:0016197;endosome transport;0.0096527099254664!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0100522297595915!GO:0005586;collagen type III;0.0100757365364881!GO:0045045;secretory pathway;0.0101900150462235!GO:0006650;glycerophospholipid metabolic process;0.0103588923186769!GO:0000339;RNA cap binding;0.0105803324633183!GO:0019798;procollagen-proline dioxygenase activity;0.0106441700012482!GO:0006220;pyrimidine nucleotide metabolic process;0.0109180736492851!GO:0006402;mRNA catabolic process;0.0110470804403461!GO:0005862;muscle thin filament tropomyosin;0.0111031173902483!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0111479301599409!GO:0006595;polyamine metabolic process;0.0114087785239028!GO:0005774;vacuolar membrane;0.011649806165031!GO:0031543;peptidyl-proline dioxygenase activity;0.0119170103540711!GO:0051128;regulation of cellular component organization and biogenesis;0.0121138067031621!GO:0051539;4 iron, 4 sulfur cluster binding;0.0121138067031621!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0127169316232973!GO:0000428;DNA-directed RNA polymerase complex;0.0127169316232973!GO:0005874;microtubule;0.0127173568079911!GO:0017166;vinculin binding;0.0127246888668767!GO:0006740;NADPH regeneration;0.012976734822593!GO:0006098;pentose-phosphate shunt;0.012976734822593!GO:0009967;positive regulation of signal transduction;0.0131057395927156!GO:0006509;membrane protein ectodomain proteolysis;0.0131930429589766!GO:0033619;membrane protein proteolysis;0.0131930429589766!GO:0043022;ribosome binding;0.0136055463202995!GO:0016860;intramolecular oxidoreductase activity;0.0138303292404371!GO:0008320;protein transmembrane transporter activity;0.013869356927111!GO:0031625;ubiquitin protein ligase binding;0.0139831478644278!GO:0016584;nucleosome positioning;0.0140605638093432!GO:0050811;GABA receptor binding;0.014604892882418!GO:0005637;nuclear inner membrane;0.0147860418239003!GO:0006892;post-Golgi vesicle-mediated transport;0.0147963556165131!GO:0007040;lysosome organization and biogenesis;0.0148467640773232!GO:0031418;L-ascorbic acid binding;0.0149557421665318!GO:0004674;protein serine/threonine kinase activity;0.0151166871195906!GO:0005832;chaperonin-containing T-complex;0.015458584932983!GO:0045792;negative regulation of cell size;0.0155044882458232!GO:0051540;metal cluster binding;0.015789833281695!GO:0051536;iron-sulfur cluster binding;0.015789833281695!GO:0003746;translation elongation factor activity;0.0158440828180333!GO:0006643;membrane lipid metabolic process;0.0159889889104072!GO:0032984;macromolecular complex disassembly;0.0160084355749291!GO:0004364;glutathione transferase activity;0.0162492219356375!GO:0006066;alcohol metabolic process;0.0163973462735793!GO:0007264;small GTPase mediated signal transduction;0.0164753627966974!GO:0065007;biological regulation;0.0165949813314453!GO:0000209;protein polyubiquitination;0.0168448416579776!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0168508178332432!GO:0007034;vacuolar transport;0.0170695861925876!GO:0006289;nucleotide-excision repair;0.017648188524958!GO:0007052;mitotic spindle organization and biogenesis;0.0178512626716595!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0179532627492404!GO:0006720;isoprenoid metabolic process;0.0179532627492404!GO:0006497;protein amino acid lipidation;0.0179532627492404!GO:0006144;purine base metabolic process;0.0179532627492404!GO:0031901;early endosome membrane;0.0185559956474511!GO:0030145;manganese ion binding;0.0185798951954544!GO:0044255;cellular lipid metabolic process;0.0188159346961938!GO:0008168;methyltransferase activity;0.0195891608003771!GO:0030041;actin filament polymerization;0.0196143124077939!GO:0042158;lipoprotein biosynthetic process;0.0196143124077939!GO:0050681;androgen receptor binding;0.0198193944103394!GO:0003711;transcription elongation regulator activity;0.0202949309393781!GO:0030308;negative regulation of cell growth;0.0203885379404745!GO:0016741;transferase activity, transferring one-carbon groups;0.0204250994302113!GO:0031529;ruffle organization and biogenesis;0.0205017898727915!GO:0006672;ceramide metabolic process;0.0208793232607436!GO:0033559;unsaturated fatty acid metabolic process;0.0215453309702629!GO:0006636;unsaturated fatty acid biosynthetic process;0.0215453309702629!GO:0019222;regulation of metabolic process;0.0222908606992168!GO:0007021;tubulin folding;0.0224320025728818!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0227119985509501!GO:0005758;mitochondrial intermembrane space;0.0230874483175035!GO:0030518;steroid hormone receptor signaling pathway;0.0230874483175035!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0232471617653365!GO:0003756;protein disulfide isomerase activity;0.0235767198122538!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0235767198122538!GO:0043492;ATPase activity, coupled to movement of substances;0.0236683713442089!GO:0006007;glucose catabolic process;0.0241344128182014!GO:0000049;tRNA binding;0.0246008984710615!GO:0042770;DNA damage response, signal transduction;0.0246008984710615!GO:0046519;sphingoid metabolic process;0.0246008984710615!GO:0008234;cysteine-type peptidase activity;0.0247532889723693!GO:0006275;regulation of DNA replication;0.0248202456082171!GO:0008203;cholesterol metabolic process;0.0249749153101621!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025705263228139!GO:0000096;sulfur amino acid metabolic process;0.0260687984547409!GO:0030384;phosphoinositide metabolic process;0.0262648446712006!GO:0022406;membrane docking;0.0263115447561777!GO:0048278;vesicle docking;0.0263115447561777!GO:0031970;organelle envelope lumen;0.0267016580959357!GO:0030032;lamellipodium biogenesis;0.026717444401618!GO:0007093;mitotic cell cycle checkpoint;0.0269803768999452!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0270273359214846!GO:0008243;plasminogen activator activity;0.0270331063471469!GO:0044437;vacuolar part;0.0272954670392711!GO:0006733;oxidoreduction coenzyme metabolic process;0.0274699727629805!GO:0006611;protein export from nucleus;0.0277184828286039!GO:0048468;cell development;0.0277573909992288!GO:0006401;RNA catabolic process;0.0277713205938461!GO:0008299;isoprenoid biosynthetic process;0.0278452046931077!GO:0050750;low-density lipoprotein receptor binding;0.0284413358681759!GO:0031123;RNA 3'-end processing;0.028634781357767!GO:0007033;vacuole organization and biogenesis;0.028646954881537!GO:0006984;ER-nuclear signaling pathway;0.0288458873695169!GO:0030125;clathrin vesicle coat;0.0291381737904074!GO:0030665;clathrin coated vesicle membrane;0.0291381737904074!GO:0043241;protein complex disassembly;0.0294019824961325!GO:0051098;regulation of binding;0.0298556760254331!GO:0051101;regulation of DNA binding;0.0300998690385807!GO:0006778;porphyrin metabolic process;0.0301402651203775!GO:0033013;tetrapyrrole metabolic process;0.0301402651203775!GO:0030119;AP-type membrane coat adaptor complex;0.0302606849724219!GO:0006506;GPI anchor biosynthetic process;0.0305281830551125!GO:0007088;regulation of mitosis;0.0308216405879747!GO:0005669;transcription factor TFIID complex;0.0311713477921403!GO:0006769;nicotinamide metabolic process;0.0311713477921403!GO:0005765;lysosomal membrane;0.0314102245027621!GO:0008147;structural constituent of bone;0.0324175248045631!GO:0007030;Golgi organization and biogenesis;0.0324175248045631!GO:0008629;induction of apoptosis by intracellular signals;0.0326869151856888!GO:0048037;cofactor binding;0.0327076227419077!GO:0003682;chromatin binding;0.0328609887648988!GO:0008097;5S rRNA binding;0.0328609887648988!GO:0005099;Ras GTPase activator activity;0.0331301452475001!GO:0043624;cellular protein complex disassembly;0.0331301452475001!GO:0031371;ubiquitin conjugating enzyme complex;0.0332409509444123!GO:0019206;nucleoside kinase activity;0.0336959217990713!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.033988545639229!GO:0030833;regulation of actin filament polymerization;0.0345664809521507!GO:0008154;actin polymerization and/or depolymerization;0.0347001854469089!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0352355229175134!GO:0035035;histone acetyltransferase binding;0.0357096211711285!GO:0008286;insulin receptor signaling pathway;0.0358655469314861!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0358655469314861!GO:0000287;magnesium ion binding;0.0358857229936446!GO:0006505;GPI anchor metabolic process;0.0359252314912329!GO:0006739;NADP metabolic process;0.0360471921230333!GO:0009119;ribonucleoside metabolic process;0.0362076961900316!GO:0008637;apoptotic mitochondrial changes;0.0362551176373785!GO:0004003;ATP-dependent DNA helicase activity;0.0363419454577629!GO:0005100;Rho GTPase activator activity;0.0365061919069754!GO:0006790;sulfur metabolic process;0.0365152616217924!GO:0030508;thiol-disulfide exchange intermediate activity;0.0379631976622685!GO:0006904;vesicle docking during exocytosis;0.038246164328217!GO:0015036;disulfide oxidoreductase activity;0.0382513655548478!GO:0004448;isocitrate dehydrogenase activity;0.0387364164717912!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0387606660921266!GO:0010257;NADH dehydrogenase complex assembly;0.0387606660921266!GO:0033108;mitochondrial respiratory chain complex assembly;0.0387606660921266!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0398974591049796!GO:0033043;regulation of organelle organization and biogenesis;0.0398974591049796!GO:0048144;fibroblast proliferation;0.0399978897961126!GO:0048145;regulation of fibroblast proliferation;0.0399978897961126!GO:0006417;regulation of translation;0.0400648752969644!GO:0005801;cis-Golgi network;0.0404758082909136!GO:0008022;protein C-terminus binding;0.0405836849954787!GO:0005784;translocon complex;0.0407108754577765!GO:0008538;proteasome activator activity;0.0416608081396187!GO:0030911;TPR domain binding;0.0419501440741857!GO:0006749;glutathione metabolic process;0.0424718291762257!GO:0030496;midbody;0.0427046065411708!GO:0006405;RNA export from nucleus;0.0434873534082755!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0435257870207834!GO:0048518;positive regulation of biological process;0.0437040083360836!GO:0006644;phospholipid metabolic process;0.043756940773068!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0441041420607894!GO:0004563;beta-N-acetylhexosaminidase activity;0.0445555038293835!GO:0022884;macromolecule transmembrane transporter activity;0.0446533086730756!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0446533086730756!GO:0009081;branched chain family amino acid metabolic process;0.0446533086730756!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.044750749736583!GO:0043065;positive regulation of apoptosis;0.0447686048724682!GO:0030503;regulation of cell redox homeostasis;0.0449657920448878!GO:0006378;mRNA polyadenylation;0.0450845986315828!GO:0045892;negative regulation of transcription, DNA-dependent;0.045592838698473!GO:0004287;prolyl oligopeptidase activity;0.0457930682831065!GO:0030131;clathrin adaptor complex;0.0458182278196112!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0463203990533238!GO:0005583;fibrillar collagen;0.0468683001534365!GO:0005938;cell cortex;0.0469335774447243!GO:0003923;GPI-anchor transamidase activity;0.0469437748491244!GO:0016255;attachment of GPI anchor to protein;0.0469437748491244!GO:0042765;GPI-anchor transamidase complex;0.0469437748491244!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.047298062555608!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0485956300913854!GO:0007041;lysosomal transport;0.0490200716371939!GO:0004300;enoyl-CoA hydratase activity;0.0490848640919715!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0493277514754128!GO:0000303;response to superoxide;0.0498484935598162!GO:0006767;water-soluble vitamin metabolic process;0.0498506089898723!GO:0022411;cellular component disassembly;0.0499195441269042
|sample_id=11239
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=colon
|top_motifs=TAL1_TCF{3,4,12}:2.22023411058;NKX3-1:2.04014604399;DBP:1.89613249291;TEF:1.84797834922;MYBL2:1.58057941144;HSF1,2:1.33021168584;GZF1:1.32583978052;NKX2-2,8:1.32088948743;TFAP4:1.32023803386;ZNF238:1.29079941248;CDC5L:1.28502399675;GFI1B:1.20191781522;LHX3,4:1.15033307573;TEAD1:1.10716624134;NFIX:1.00781003868;AIRE:1.00590326794;NR3C1:1.00151367335;TBX4,5:0.998984611232;HMGA1,2:0.953341201981;POU3F1..4:0.879188147113;FOXL1:0.874976153128;SRF:0.868418917482;GFI1:0.852869680078;HAND1,2:0.782550783942;ALX4:0.770226105549;GTF2A1,2:0.73415379634;TLX1..3_NFIC{dimer}:0.711883467903;ATF6:0.705849434459;TP53:0.678530955657;PAX4:0.668526850404;HOX{A5,B5}:0.6551269546;SREBF1,2:0.645527747517;ESR1:0.643031092331;PAX1,9:0.622428055097;NKX2-1,4:0.621388009768;SOX17:0.618170992349;EBF1:0.611006998041;SPZ1:0.592034468586;YY1:0.579145139415;FOX{I1,J2}:0.578921697562;GCM1,2:0.540519956567;TBP:0.533017748157;UFEwm:0.531735140049;MZF1:0.51858414589;NFATC1..3:0.512805043197;HBP1_HMGB_SSRP1_UBTF:0.506966328457;HES1:0.493442117278;STAT5{A,B}:0.46058429699;GTF2I:0.439862844191;CDX1,2,4:0.42965172091;GLI1..3:0.425669987324;TFDP1:0.418112692915;ADNP_IRX_SIX_ZHX:0.411282052862;MAZ:0.391514040521;EN1,2:0.388332183554;NKX6-1,2:0.387785278247;FOXP1:0.385144522114;XBP1:0.337222574748;MAFB:0.311188994989;IKZF1:0.310339238795;FOXD3:0.308338963423;NHLH1,2:0.303368534956;RXR{A,B,G}:0.299073141885;ZBTB16:0.291530775527;PAX8:0.291017712597;KLF4:0.281695006253;ARID5B:0.278306201675;EVI1:0.258946864216;HOX{A4,D4}:0.248342737348;PATZ1:0.246236114514;bHLH_family:0.212422983245;ZIC1..3:0.209533174719;NKX2-3_NKX2-5:0.198772748596;E2F1..5:0.189331333875;POU1F1:0.188779668463;STAT1,3:0.183642822933;SOX5:0.176328935697;NFE2L2:0.151845107995;AHR_ARNT_ARNT2:0.150872998771;PAX5:0.149537483534;ELK1,4_GABP{A,B1}:0.138691469671;NFY{A,B,C}:0.136167136542;NR5A1,2:0.133447658523;NANOG{mouse}:0.131385441046;HNF1A:0.128500266582;TLX2:0.124749397839;PRRX1,2:0.106798636021;TGIF1:0.104219124801;TFAP2{A,C}:0.0926333876715;LEF1_TCF7_TCF7L1,2:0.0924020947735;MYB:0.0921645723494;MYFfamily:0.086181448109;CRX:0.0747835298424;SP1:0.0739691581958;ESRRA:0.071589541723;HLF:0.0598816015007;ZNF384:0.0570606763778;HNF4A_NR2F1,2:0.0511989049864;ZNF423:0.0455092007097;PDX1:0.0416899423909;ZNF143:0.0373016229143;NR1H4:0.0352876923994;HOXA9_MEIS1:0.0348788095586;HOX{A6,A7,B6,B7}:0.0343509350227;FOXA2:0.0314336246285;TOPORS:0.0257370373227;PRDM1:0.0132975788303;NRF1:0.0103156046199;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00600470481848;RXRA_VDR{dimer}:-0.0120187819427;TFCP2:-0.0179401594817;NR6A1:-0.0205509756842;BPTF:-0.0437761716302;HIC1:-0.0595215337747;FOXM1:-0.0625173883939;XCPE1{core}:-0.0647243552579;MTE{core}:-0.0955993020238;FOS_FOS{B,L1}_JUN{B,D}:-0.119765671707;NKX3-2:-0.124390621188;AR:-0.130801000176;FOXQ1:-0.13786030792;ONECUT1,2:-0.138651076151;RFX1:-0.139197651104;BACH2:-0.142106101477;IRF7:-0.143761201812;MEF2{A,B,C,D}:-0.147771918895;NFE2:-0.148370617189;STAT2,4,6:-0.156789635771;PITX1..3:-0.17988821616;CEBPA,B_DDIT3:-0.187363276441;GATA4:-0.190969232854;T:-0.191140851974;PPARG:-0.193762945769;FOX{F1,F2,J1}:-0.215626225424;DMAP1_NCOR{1,2}_SMARC:-0.217030489818;IRF1,2:-0.223434745081;NANOG:-0.228353290183;ATF2:-0.242640638488;HIF1A:-0.244392118448;OCT4_SOX2{dimer}:-0.28783079625;SMAD1..7,9:-0.292607159027;FOX{D1,D2}:-0.302097381937;FOXO1,3,4:-0.302570743308;ZFP161:-0.306312165781;ZNF148:-0.306441319458;RORA:-0.310001974842;FOSL2:-0.310049968047;ZBTB6:-0.31025659601;ELF1,2,4:-0.31561805551;PBX1:-0.318905787193;PAX6:-0.334077714204;MTF1:-0.352889051599;FOXP3:-0.358659188217;REST:-0.363880353077;EGR1..3:-0.364460078041;POU6F1:-0.365629566773;RUNX1..3:-0.376977869914;NFKB1_REL_RELA:-0.379825104261;POU5F1:-0.384181203495;PAX2:-0.384627545522;JUN:-0.408973705597;RREB1:-0.41856683506;SOX2:-0.420660861819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.444527604971;RFX2..5_RFXANK_RFXAP:-0.45609464539;IKZF2:-0.457640091057;CUX2:-0.464613235286;CREB1:-0.470156863323;TFAP2B:-0.484000375662;ATF4:-0.489402378691;LMO2:-0.492212648162;MED-1{core}:-0.500165659492;ETS1,2:-0.502479900908;FOXN1:-0.506030497962;SPIB:-0.539652480622;ATF5_CREB3:-0.560895359393;GATA6:-0.572159894401;SOX{8,9,10}:-0.590243217059;SPI1:-0.622070638145;NFIL3:-0.624335774044;PAX3,7:-0.630369912712;HMX1:-0.636386988102;VSX1,2:-0.695995362791;NFE2L1:-0.722139499153;POU2F1..3:-0.755861405583;SNAI1..3:-0.758462325415;ALX1:-0.830913688028;BREu{core}:-0.875053667898;RBPJ:-0.876508813804;EP300:-0.972520839144;ZEB1:-1.06763561566;MYOD1:-1.10666685461
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11239-116D6;search_select_hide=table117:FF:11239-116D6
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Smooth Muscle Cells - Colonic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10868
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1830
catalog numberSC2945
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004783
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10868 CAGE DRX008483 DRR009355
Accession ID Hg19

Library idBAMCTSS
CNhs10868 DRZ000780 DRZ002165
Accession ID Hg38

Library idBAMCTSS
CNhs10868 DRZ012130 DRZ013515
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004783
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GTAGAG sRNA-Seq DRX037218 DRR041584
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GTAGAG DRZ007226


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0868
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.279
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.187
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0153
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0592
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0718
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.318
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0521
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0174
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0359
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.133
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0676
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.06
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0718
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0718
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.512
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.279
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.354
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.428
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.318
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10868

Jaspar motifP-value
MA0002.20.00269
MA0003.10.776
MA0004.10.679
MA0006.10.418
MA0007.10.41
MA0009.10.304
MA0014.10.696
MA0017.10.222
MA0018.29.26715e-5
MA0019.10.161
MA0024.10.771
MA0025.11.95946e-4
MA0027.10.757
MA0028.10.659
MA0029.10.804
MA0030.10.0781
MA0031.10.347
MA0035.20.00972
MA0038.10.207
MA0039.20.228
MA0040.10.659
MA0041.10.105
MA0042.10.646
MA0043.10.00793
MA0046.10.376
MA0047.20.226
MA0048.10.208
MA0050.10.021
MA0051.10.034
MA0052.10.208
MA0055.10.264
MA0057.10.689
MA0058.10.904
MA0059.10.638
MA0060.10.475
MA0061.10.0024
MA0062.21.58017e-4
MA0065.20.137
MA0066.10.83
MA0067.10.0159
MA0068.17.15654e-4
MA0069.10.097
MA0070.10.589
MA0071.10.926
MA0072.10.307
MA0073.10.239
MA0074.10.875
MA0076.10.518
MA0077.10.472
MA0078.10.692
MA0079.20.0489
MA0080.23.13248e-11
MA0081.10.057
MA0083.10.0335
MA0084.10.0816
MA0087.10.412
MA0088.10.067
MA0090.12.87045e-6
MA0091.10.00152
MA0092.10.426
MA0093.10.806
MA0099.22.66897e-5
MA0100.10.759
MA0101.10.00637
MA0102.20.804
MA0103.16.39308e-6
MA0104.20.14
MA0105.10.53
MA0106.10.0233
MA0107.10.00128
MA0108.20.0702
MA0111.10.592
MA0112.20.361
MA0113.10.531
MA0114.10.601
MA0115.10.118
MA0116.10.87
MA0117.10.707
MA0119.10.0464
MA0122.10.277
MA0124.10.604
MA0125.10.39
MA0131.10.949
MA0135.10.0158
MA0136.14.70415e-11
MA0137.20.714
MA0138.20.163
MA0139.10.513
MA0140.10.422
MA0141.10.343
MA0142.10.0512
MA0143.10.859
MA0144.10.578
MA0145.10.248
MA0146.10.525
MA0147.10.0695
MA0148.10.408
MA0149.10.448
MA0150.10.00283
MA0152.10.00579
MA0153.10.325
MA0154.10.338
MA0155.10.98
MA0156.11.67901e-8
MA0157.10.465
MA0159.10.142
MA0160.10.0333
MA0162.10.028
MA0163.10.244
MA0164.10.761
MA0258.10.53
MA0259.10.439



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10868

Novel motifP-value
10.502
100.887
1000.0559
1010.552
1020.00264
1030.647
1040.815
1050.933
1060.151
1070.462
1080.478
1090.348
110.76
1100.369
1110.314
1120.617
1130.894
1140.536
1150.773
1160.173
1170.323
1180.466
1190.283
120.168
1200.54
1210.72
1220.00325
1230.0142
1240.553
1250.751
1260.732
1270.115
1280.709
1290.348
130.509
1300.0318
1310.44
1320.715
1330.583
1340.972
1350.93
1360.754
1370.023
1380.602
1390.0724
140.19
1400.357
1410.68
1420.235
1430.229
1440.378
1450.744
1460.387
1470.151
1480.8
1490.321
150.0911
1500.885
1510.719
1520.869
1530.639
1540.385
1558.1771e-5
1560.458
1570.222
1580.00634
1590.24
160.451
1600.772
1610.657
1620.257
1630.575
1640.786
1650.449
1660.0154
1670.351
1680.187
1690.384
170.616
180.538
190.0195
20.898
200.426
210.563
220.937
230.813
240.731
250.146
260.658
270.665
280.202
290.895
30.657
300.729
310.937
323.54749e-9
330.637
340.972
350.268
360.206
370.693
380.297
390.478
40.0518
400.416
410.008
420.585
430.469
440.505
450.198
460.582
470.542
480.529
490.119
50.68
500.557
511
520.789
530.215
540.809
550.201
560.76
570.917
580.127
590.199
60.768
600.079
610.384
620.161
630.946
640.569
650.639
660.351
670.852
680.466
690.445
70.306
700.00794
710.244
720.333
730.469
740.117
750.437
760.853
770.52
780.211
790.25
80.621
800.132
810.855
820.347
830.721
840.338
850.232
860.904
870.813
880.469
890.713
90.892
900.589
910.676
920.499
930.54
940.389
950.782
960.292
970.584
980.0643
994.22916e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10868


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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