FF:11249-116E7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005906 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005906 | ||
|HumanCAGEScanFiles=NCig10046;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008395;DRR009267;DRZ000692;DRZ002077;DRZ012042;DRZ013427 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037017;DRR041383;DRZ007025 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002574 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000042,FF:0000146 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11249-116E7 | |id=FF:11249-116E7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000042;;FF:0000146 | ||
|is_obsolete= | |||
|library_id=CNhs10877 | |||
|library_id_phase_based=2:CNhs10877 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11249 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACTTGA.11249 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11249 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACTTGA.11249 | |||
|name=Pancreatic stromal cells, donor1 | |name=Pancreatic stromal cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10046,,, | |profile_cagescan=NCig10046,,, | ||
|profile_hcage=CNhs10877,LSID703,release008,COMPLETED | |profile_hcage=CNhs10877,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0180915207549932,0,0,0.0361830415099865,0,0.0905781005116337,0.0695819800362469,-0.241179090683527,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117139968838441,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0785195963582216,0,0,0,0,0,0,0,0,0.0105759689052891,0,0,0,0.328274990725751,0,0.0333502802981055,0.100594818706322,-0.0608093197326186,0,0,0.00325119149322546,0,0,0,0,0,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0.0695819800362469,0,0,0,0,0,-0.0894523328511703,0.0361830415099865,0,0,-0.23631747091527,-0.075411790149977,0,0.20633608837101,0,0.25089613059802,0.031504528129401,-0.138477200800895,0,0,0,0.0361830415099865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153771813125078,0,0,0,-0.098877677734005,-0.147383818532265,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 81: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.16E+09 | ||
|rna_weight_ug=80 | |rna_weight_ug=80 | ||
|rnaseq_library_id=SRhi10003.ACTTGA | |||
|sample_age=39 | |sample_age=39 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CS-ABI-513 | |sample_cell_catalog=CS-ABI-513 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.72858284522745e-238!GO:0005737;cytoplasm;2.76328924066635e-190!GO:0043226;organelle;3.15114416703079e-184!GO:0043229;intracellular organelle;6.12825539664711e-184!GO:0043231;intracellular membrane-bound organelle;2.60676026074177e-182!GO:0043227;membrane-bound organelle;5.75168946083848e-182!GO:0044422;organelle part;2.06212570072758e-139!GO:0044446;intracellular organelle part;6.03523351478795e-138!GO:0044444;cytoplasmic part;1.72243338017038e-132!GO:0032991;macromolecular complex;1.06156931781372e-97!GO:0044238;primary metabolic process;5.42597578978829e-85!GO:0030529;ribonucleoprotein complex;8.06978520843523e-84!GO:0044237;cellular metabolic process;4.93785596301378e-83!GO:0043170;macromolecule metabolic process;6.37606396076478e-79!GO:0005515;protein binding;2.25993313114687e-76!GO:0005634;nucleus;1.00779973270002e-71!GO:0044428;nuclear part;8.15728764852368e-68!GO:0043233;organelle lumen;8.91732808816055e-68!GO:0031974;membrane-enclosed lumen;8.91732808816055e-68!GO:0003723;RNA binding;5.55187286055528e-66!GO:0005739;mitochondrion;1.78447365003243e-60!GO:0016043;cellular component organization and biogenesis;1.41193887474437e-52!GO:0005840;ribosome;8.39745556081105e-51!GO:0019538;protein metabolic process;1.61529033340747e-50!GO:0043234;protein complex;1.90496397105684e-49!GO:0031090;organelle membrane;2.31846609405026e-48!GO:0006412;translation;1.40135551040005e-47!GO:0015031;protein transport;9.89372904862671e-47!GO:0033036;macromolecule localization;1.06033291618966e-45!GO:0006396;RNA processing;1.1050350838758e-44!GO:0044260;cellular macromolecule metabolic process;2.09072057986393e-44!GO:0003735;structural constituent of ribosome;2.73988750737343e-44!GO:0044267;cellular protein metabolic process;1.29523162431369e-43!GO:0045184;establishment of protein localization;3.28020544233929e-42!GO:0008104;protein localization;5.03243059956494e-42!GO:0043283;biopolymer metabolic process;2.14775296973961e-41!GO:0044429;mitochondrial part;6.60997084983219e-40!GO:0031981;nuclear lumen;7.1932627227907e-40!GO:0005829;cytosol;8.60026484014328e-39!GO:0033279;ribosomal subunit;2.25477034275582e-38!GO:0009058;biosynthetic process;2.45208070064922e-38!GO:0010467;gene expression;1.21670497257814e-37!GO:0016071;mRNA metabolic process;1.82289320949987e-37!GO:0046907;intracellular transport;4.26609631402427e-37!GO:0031967;organelle envelope;1.16769078081569e-36!GO:0031975;envelope;2.06855742086037e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12091320535418e-36!GO:0009059;macromolecule biosynthetic process;4.66195319567395e-36!GO:0044249;cellular biosynthetic process;1.60229821192201e-35!GO:0008380;RNA splicing;6.24976039608243e-35!GO:0065003;macromolecular complex assembly;7.00412693860887e-34!GO:0006996;organelle organization and biogenesis;7.21086699036576e-34!GO:0043228;non-membrane-bound organelle;3.40772902387481e-33!GO:0043232;intracellular non-membrane-bound organelle;3.40772902387481e-33!GO:0006397;mRNA processing;2.52810172897354e-32!GO:0006886;intracellular protein transport;7.64761075986809e-31!GO:0022607;cellular component assembly;9.72835676113616e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.87134457377622e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.89317015220079e-29!GO:0005654;nucleoplasm;2.93811849681469e-25!GO:0005740;mitochondrial envelope;3.89321607627972e-25!GO:0006259;DNA metabolic process;4.62183889757409e-25!GO:0005681;spliceosome;1.65966390504396e-24!GO:0051649;establishment of cellular localization;7.01867973220398e-24!GO:0031966;mitochondrial membrane;8.85693806602373e-24!GO:0051641;cellular localization;1.02775635345673e-23!GO:0019866;organelle inner membrane;3.38508849629834e-23!GO:0007049;cell cycle;8.18674232841824e-23!GO:0000166;nucleotide binding;9.9603123033916e-23!GO:0044445;cytosolic part;1.20804507158033e-22!GO:0003676;nucleic acid binding;9.21224918193254e-22!GO:0005743;mitochondrial inner membrane;1.33115356477583e-21!GO:0006457;protein folding;5.06737326274606e-21!GO:0006119;oxidative phosphorylation;9.21552545700491e-21!GO:0012505;endomembrane system;1.15898799287184e-20!GO:0015935;small ribosomal subunit;2.23055091236078e-20!GO:0044451;nucleoplasm part;3.98073524890688e-20!GO:0005783;endoplasmic reticulum;5.21937787861245e-20!GO:0048770;pigment granule;1.05081410731466e-19!GO:0042470;melanosome;1.05081410731466e-19!GO:0016462;pyrophosphatase activity;2.99228100219928e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.29623881776181e-19!GO:0015934;large ribosomal subunit;4.20285791265984e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;5.26646485044507e-19!GO:0022618;protein-RNA complex assembly;1.23064958591938e-18!GO:0017111;nucleoside-triphosphatase activity;1.88971367090706e-18!GO:0016874;ligase activity;7.55837804883034e-18!GO:0031980;mitochondrial lumen;1.13452167393314e-17!GO:0005759;mitochondrial matrix;1.13452167393314e-17!GO:0044455;mitochondrial membrane part;1.20155200016948e-17!GO:0022402;cell cycle process;2.50534367107374e-17!GO:0043285;biopolymer catabolic process;1.33289467813682e-16!GO:0044432;endoplasmic reticulum part;1.56648135855258e-16!GO:0006512;ubiquitin cycle;1.59923950599826e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.05318675123214e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.51556478138616e-16!GO:0008135;translation factor activity, nucleic acid binding;3.4752467356291e-16!GO:0005794;Golgi apparatus;3.56677176193458e-16!GO:0044265;cellular macromolecule catabolic process;4.32602399391782e-16!GO:0032553;ribonucleotide binding;4.38368802972082e-16!GO:0032555;purine ribonucleotide binding;4.38368802972082e-16!GO:0008134;transcription factor binding;4.45868869552711e-16!GO:0000278;mitotic cell cycle;4.53003707929184e-16!GO:0019941;modification-dependent protein catabolic process;5.07084708416039e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.07084708416039e-16!GO:0017076;purine nucleotide binding;5.25566890146689e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.28222884318336e-16!GO:0016070;RNA metabolic process;6.95017087332453e-16!GO:0044257;cellular protein catabolic process;7.23366615260997e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.58169134962608e-15!GO:0005730;nucleolus;2.03624649266179e-15!GO:0005746;mitochondrial respiratory chain;2.12810703157567e-15!GO:0030163;protein catabolic process;2.65815240031899e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.8758075715941e-15!GO:0048193;Golgi vesicle transport;2.91539841967859e-15!GO:0006974;response to DNA damage stimulus;3.02391354985865e-15!GO:0009057;macromolecule catabolic process;4.76117574977026e-15!GO:0051186;cofactor metabolic process;9.45288163999472e-15!GO:0006605;protein targeting;1.32992420302749e-14!GO:0016192;vesicle-mediated transport;2.60236117583729e-14!GO:0005761;mitochondrial ribosome;3.63119634417154e-14!GO:0000313;organellar ribosome;3.63119634417154e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.18688141964613e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.24062444363855e-14!GO:0003954;NADH dehydrogenase activity;7.24062444363855e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.24062444363855e-14!GO:0005694;chromosome;1.69023637468323e-13!GO:0051082;unfolded protein binding;1.85632575151328e-13!GO:0044248;cellular catabolic process;2.78319624643827e-13!GO:0005524;ATP binding;4.82672725090221e-13!GO:0003743;translation initiation factor activity;6.03065474425734e-13!GO:0032559;adenyl ribonucleotide binding;7.39976654461709e-13!GO:0000087;M phase of mitotic cell cycle;7.5228080422512e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.67407239325402e-13!GO:0000375;RNA splicing, via transesterification reactions;9.67407239325402e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.67407239325402e-13!GO:0030554;adenyl nucleotide binding;1.21750778007248e-12!GO:0007067;mitosis;1.26500430975972e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.36841046003338e-12!GO:0005793;ER-Golgi intermediate compartment;1.82731499999604e-12!GO:0044427;chromosomal part;2.18426745072455e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.78614894428822e-12!GO:0042773;ATP synthesis coupled electron transport;2.78614894428822e-12!GO:0005635;nuclear envelope;3.14404506503167e-12!GO:0006413;translational initiation;4.64124513451993e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.64124513451993e-12!GO:0045271;respiratory chain complex I;4.64124513451993e-12!GO:0005747;mitochondrial respiratory chain complex I;4.64124513451993e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.68684915078841e-12!GO:0022403;cell cycle phase;8.99580302922799e-12!GO:0006281;DNA repair;9.56602027623199e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05247577327058e-11!GO:0031965;nuclear membrane;1.3366417222398e-11!GO:0006732;coenzyme metabolic process;1.9095827656255e-11!GO:0051276;chromosome organization and biogenesis;1.97418956280817e-11!GO:0042254;ribosome biogenesis and assembly;2.39504154259584e-11!GO:0005789;endoplasmic reticulum membrane;2.57435594340436e-11!GO:0043412;biopolymer modification;2.70700900649273e-11!GO:0051301;cell division;5.74908873222107e-11!GO:0009719;response to endogenous stimulus;6.9266810666307e-11!GO:0044453;nuclear membrane part;8.02995387678613e-11!GO:0006913;nucleocytoplasmic transport;8.73516604481421e-11!GO:0003712;transcription cofactor activity;1.53725566892571e-10!GO:0051169;nuclear transport;2.09051346291292e-10!GO:0009055;electron carrier activity;2.11580774126741e-10!GO:0006461;protein complex assembly;2.22137571017416e-10!GO:0008639;small protein conjugating enzyme activity;2.26855934011681e-10!GO:0016604;nuclear body;2.28242955137639e-10!GO:0006446;regulation of translational initiation;2.38571998481452e-10!GO:0008565;protein transporter activity;3.00463208614429e-10!GO:0006464;protein modification process;3.6857024483212e-10!GO:0000279;M phase;3.68911385768541e-10!GO:0000074;regulation of progression through cell cycle;3.91251621036098e-10!GO:0009259;ribonucleotide metabolic process;4.38414618366012e-10!GO:0051726;regulation of cell cycle;4.38414618366012e-10!GO:0004842;ubiquitin-protein ligase activity;4.54105663762484e-10!GO:0012501;programmed cell death;4.93494991725141e-10!GO:0006163;purine nucleotide metabolic process;5.81073041481658e-10!GO:0019787;small conjugating protein ligase activity;6.51361079695954e-10!GO:0006915;apoptosis;7.77054332433131e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.33949936670336e-09!GO:0009150;purine ribonucleotide metabolic process;1.4821734026732e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.8509208331038e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.21622736892066e-09!GO:0006260;DNA replication;2.77759067915795e-09!GO:0006164;purine nucleotide biosynthetic process;3.61147171473387e-09!GO:0015630;microtubule cytoskeleton;3.8108443240613e-09!GO:0006323;DNA packaging;4.44759681601023e-09!GO:0048523;negative regulation of cellular process;4.76778492497702e-09!GO:0004386;helicase activity;6.23308634855358e-09!GO:0008219;cell death;6.23308634855358e-09!GO:0016265;death;6.23308634855358e-09!GO:0045333;cellular respiration;6.23600395784051e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.64935468144559e-09!GO:0042623;ATPase activity, coupled;7.09793834161049e-09!GO:0009260;ribonucleotide biosynthetic process;7.17020504481931e-09!GO:0009060;aerobic respiration;7.37693859434272e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.67385350442942e-09!GO:0016887;ATPase activity;8.67385350442942e-09!GO:0043687;post-translational protein modification;8.99369948690833e-09!GO:0016881;acid-amino acid ligase activity;1.03935879390786e-08!GO:0050794;regulation of cellular process;1.20035146253669e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.34768996379638e-08!GO:0009141;nucleoside triphosphate metabolic process;1.4549056098768e-08!GO:0005643;nuclear pore;1.50840236587203e-08!GO:0005768;endosome;1.61485630148794e-08!GO:0016607;nuclear speck;1.64159178346851e-08!GO:0065004;protein-DNA complex assembly;1.64602089036798e-08!GO:0003924;GTPase activity;1.77778277616723e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.93882139744509e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.93882139744509e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.05457872412445e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.12734837966069e-08!GO:0006399;tRNA metabolic process;2.18750990993776e-08!GO:0009056;catabolic process;2.284198333496e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.75012637973726e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.75012637973726e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.75012637973726e-08!GO:0017038;protein import;3.00258775286931e-08!GO:0065002;intracellular protein transport across a membrane;3.96109275895224e-08!GO:0043038;amino acid activation;3.9657667299093e-08!GO:0006418;tRNA aminoacylation for protein translation;3.9657667299093e-08!GO:0043039;tRNA aminoacylation;3.9657667299093e-08!GO:0048475;coated membrane;4.10365608125276e-08!GO:0030117;membrane coat;4.10365608125276e-08!GO:0030120;vesicle coat;5.4369287135657e-08!GO:0030662;coated vesicle membrane;5.4369287135657e-08!GO:0050657;nucleic acid transport;7.05914739684857e-08!GO:0051236;establishment of RNA localization;7.05914739684857e-08!GO:0050658;RNA transport;7.05914739684857e-08!GO:0015986;ATP synthesis coupled proton transport;7.06591060508432e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.06591060508432e-08!GO:0051246;regulation of protein metabolic process;7.66428911804025e-08!GO:0008026;ATP-dependent helicase activity;8.88821980817609e-08!GO:0006403;RNA localization;9.81116917483051e-08!GO:0046034;ATP metabolic process;1.06228387983752e-07!GO:0006099;tricarboxylic acid cycle;1.17430394483956e-07!GO:0046356;acetyl-CoA catabolic process;1.17430394483956e-07!GO:0000785;chromatin;1.30861718881947e-07!GO:0006333;chromatin assembly or disassembly;1.32142657553848e-07!GO:0005788;endoplasmic reticulum lumen;1.35979451935169e-07!GO:0003697;single-stranded DNA binding;1.42665903418961e-07!GO:0006366;transcription from RNA polymerase II promoter;1.46890838593778e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.49657657400331e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.49657657400331e-07!GO:0019829;cation-transporting ATPase activity;1.65179384381113e-07!GO:0051187;cofactor catabolic process;1.95106554165095e-07!GO:0016491;oxidoreductase activity;1.95968890354447e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.167516431723e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.167516431723e-07!GO:0006916;anti-apoptosis;2.167516431723e-07!GO:0048519;negative regulation of biological process;2.32717348166117e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.73383139313257e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.7598448098833e-07!GO:0046930;pore complex;2.9224936029801e-07!GO:0009109;coenzyme catabolic process;2.95103247642453e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.16698242902339e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.76485513542118e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.83804300050802e-07!GO:0006364;rRNA processing;3.83804300050802e-07!GO:0044431;Golgi apparatus part;3.83804300050802e-07!GO:0043566;structure-specific DNA binding;4.90723012558472e-07!GO:0009117;nucleotide metabolic process;4.91212986402559e-07!GO:0051188;cofactor biosynthetic process;5.362586871807e-07!GO:0006084;acetyl-CoA metabolic process;6.56991128363099e-07!GO:0016072;rRNA metabolic process;7.47852591304439e-07!GO:0042981;regulation of apoptosis;8.73507904296407e-07!GO:0043069;negative regulation of programmed cell death;8.74179451699882e-07!GO:0043067;regulation of programmed cell death;9.60440680861571e-07!GO:0044440;endosomal part;1.02384231779952e-06!GO:0010008;endosome membrane;1.02384231779952e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.10466832457299e-06!GO:0006754;ATP biosynthetic process;1.12593446306591e-06!GO:0006753;nucleoside phosphate metabolic process;1.12593446306591e-06!GO:0032446;protein modification by small protein conjugation;1.24537547332981e-06!GO:0043066;negative regulation of apoptosis;1.24951487864203e-06!GO:0031988;membrane-bound vesicle;1.41179882028358e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.47650716952214e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.48572237560945e-06!GO:0016567;protein ubiquitination;1.75159397331523e-06!GO:0007010;cytoskeleton organization and biogenesis;2.09305194325843e-06!GO:0000151;ubiquitin ligase complex;2.21195415304665e-06!GO:0000245;spliceosome assembly;2.48017405956056e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.52036515082549e-06!GO:0031252;leading edge;2.54118455974283e-06!GO:0051028;mRNA transport;2.79920127333674e-06!GO:0004298;threonine endopeptidase activity;2.79920127333674e-06!GO:0003713;transcription coactivator activity;3.06036303922758e-06!GO:0007005;mitochondrion organization and biogenesis;3.31995175924363e-06!GO:0006334;nucleosome assembly;3.44517578609541e-06!GO:0051170;nuclear import;3.46420111320888e-06!GO:0005525;GTP binding;3.47136172726012e-06!GO:0005773;vacuole;3.72556283774443e-06!GO:0005770;late endosome;3.96894112577279e-06!GO:0005798;Golgi-associated vesicle;4.32038921621135e-06!GO:0005813;centrosome;5.72763141186013e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.76690739277686e-06!GO:0006613;cotranslational protein targeting to membrane;6.15924912982277e-06!GO:0045259;proton-transporting ATP synthase complex;6.44686516919214e-06!GO:0050789;regulation of biological process;6.45664228528954e-06!GO:0006606;protein import into nucleus;6.8919501762837e-06!GO:0031324;negative regulation of cellular metabolic process;7.35136481888961e-06!GO:0045786;negative regulation of progression through cell cycle;7.48490284866979e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.57046627819875e-06!GO:0005819;spindle;8.82674373275654e-06!GO:0031497;chromatin assembly;8.95525035527012e-06!GO:0051789;response to protein stimulus;9.91810943606093e-06!GO:0006986;response to unfolded protein;9.91810943606093e-06!GO:0005667;transcription factor complex;9.98335038132812e-06!GO:0031982;vesicle;1.07102634279736e-05!GO:0005815;microtubule organizing center;1.10146556195896e-05!GO:0016859;cis-trans isomerase activity;1.15938193245262e-05!GO:0016853;isomerase activity;1.22705542610068e-05!GO:0031410;cytoplasmic vesicle;1.24998007564815e-05!GO:0009108;coenzyme biosynthetic process;1.36605000821472e-05!GO:0006752;group transfer coenzyme metabolic process;1.45211927736026e-05!GO:0016779;nucleotidyltransferase activity;1.5301307041613e-05!GO:0000323;lytic vacuole;1.70064923941635e-05!GO:0005764;lysosome;1.70064923941635e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.81849860503365e-05!GO:0005769;early endosome;1.89188916420122e-05!GO:0032561;guanyl ribonucleotide binding;1.96502536457335e-05!GO:0019001;guanyl nucleotide binding;1.96502536457335e-05!GO:0006793;phosphorus metabolic process;2.240874212893e-05!GO:0006796;phosphate metabolic process;2.240874212893e-05!GO:0016310;phosphorylation;2.28643907533248e-05!GO:0000139;Golgi membrane;2.44770691472851e-05!GO:0016563;transcription activator activity;2.70494350046469e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.72339647020373e-05!GO:0006091;generation of precursor metabolites and energy;2.77933502308088e-05!GO:0016568;chromatin modification;2.87035265146092e-05!GO:0043623;cellular protein complex assembly;3.03901828616582e-05!GO:0009892;negative regulation of metabolic process;3.30994855618564e-05!GO:0016564;transcription repressor activity;3.41260914938477e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.50967056169489e-05!GO:0008361;regulation of cell size;3.84479228636942e-05!GO:0008654;phospholipid biosynthetic process;4.35908017624367e-05!GO:0003724;RNA helicase activity;4.42386928159717e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.61560589385953e-05!GO:0019899;enzyme binding;4.67185166138813e-05!GO:0005762;mitochondrial large ribosomal subunit;4.89858173123768e-05!GO:0000315;organellar large ribosomal subunit;4.89858173123768e-05!GO:0045454;cell redox homeostasis;4.93824779950506e-05!GO:0016787;hydrolase activity;5.0043945919363e-05!GO:0016740;transferase activity;5.03894533476365e-05!GO:0007051;spindle organization and biogenesis;6.11166286909051e-05!GO:0030867;rough endoplasmic reticulum membrane;6.45789957137234e-05!GO:0016049;cell growth;6.51535654144444e-05!GO:0019843;rRNA binding;7.16446295847017e-05!GO:0043021;ribonucleoprotein binding;7.99862215174905e-05!GO:0003714;transcription corepressor activity;0.000103031422086493!GO:0000775;chromosome, pericentric region;0.000105977830709168!GO:0005048;signal sequence binding;0.000116695965818055!GO:0051427;hormone receptor binding;0.000117293501132211!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000125856686251094!GO:0016126;sterol biosynthetic process;0.000148676001464529!GO:0006612;protein targeting to membrane;0.000159276981542853!GO:0031968;organelle outer membrane;0.000163917228937391!GO:0000314;organellar small ribosomal subunit;0.000168727203053056!GO:0005763;mitochondrial small ribosomal subunit;0.000168727203053056!GO:0030133;transport vesicle;0.000175553249401326!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000188454592120483!GO:0019867;outer membrane;0.000209586867029003!GO:0051329;interphase of mitotic cell cycle;0.000224969050761648!GO:0005905;coated pit;0.000238460833815382!GO:0035257;nuclear hormone receptor binding;0.000238460833815382!GO:0001558;regulation of cell growth;0.000240084636449229!GO:0019222;regulation of metabolic process;0.00025926343162451!GO:0033116;ER-Golgi intermediate compartment membrane;0.000262957694391083!GO:0016481;negative regulation of transcription;0.000265831551378424!GO:0030663;COPI coated vesicle membrane;0.000269730642696494!GO:0030126;COPI vesicle coat;0.000269730642696494!GO:0051168;nuclear export;0.000269730642696494!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000297039401050454!GO:0005885;Arp2/3 protein complex;0.000311537366474883!GO:0030029;actin filament-based process;0.000314638255680836!GO:0000075;cell cycle checkpoint;0.000344916614201485!GO:0007243;protein kinase cascade;0.000349751110573406!GO:0003899;DNA-directed RNA polymerase activity;0.000380181130366701!GO:0008250;oligosaccharyl transferase complex;0.000410296929740813!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000447809381687062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000486360474682561!GO:0016363;nuclear matrix;0.000490178170365851!GO:0005874;microtubule;0.000490178170365851!GO:0005791;rough endoplasmic reticulum;0.000543294800715103!GO:0009165;nucleotide biosynthetic process;0.000585713338703157!GO:0004576;oligosaccharyl transferase activity;0.000596958502601226!GO:0008186;RNA-dependent ATPase activity;0.000601978710096409!GO:0007050;cell cycle arrest;0.000603561107910078!GO:0003729;mRNA binding;0.000644011061895267!GO:0006261;DNA-dependent DNA replication;0.000645206655893908!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000658452933827102!GO:0006891;intra-Golgi vesicle-mediated transport;0.000697016670871443!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000759997980512968!GO:0030137;COPI-coated vesicle;0.000789661664685759!GO:0051252;regulation of RNA metabolic process;0.000837068654344624!GO:0008047;enzyme activator activity;0.000871808360809402!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00090887548724135!GO:0005741;mitochondrial outer membrane;0.000909378729156958!GO:0051325;interphase;0.000916482737180247!GO:0018196;peptidyl-asparagine modification;0.000916482737180247!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000916482737180247!GO:0051920;peroxiredoxin activity;0.000966776646092111!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105548357775007!GO:0005657;replication fork;0.00111939082357569!GO:0048522;positive regulation of cellular process;0.00123601801117356!GO:0042802;identical protein binding;0.00137663985117934!GO:0000776;kinetochore;0.00143074728168488!GO:0006414;translational elongation;0.00146606113755672!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00154646492842648!GO:0003690;double-stranded DNA binding;0.00155437350185339!GO:0008092;cytoskeletal protein binding;0.00157205977009066!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00158106741451124!GO:0000059;protein import into nucleus, docking;0.00158561466927007!GO:0031072;heat shock protein binding;0.00159460771536505!GO:0004177;aminopeptidase activity;0.00160012433931507!GO:0048471;perinuclear region of cytoplasm;0.00160117737167635!GO:0006626;protein targeting to mitochondrion;0.0016089088616177!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00162543915409296!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00162543915409296!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00162543915409296!GO:0046474;glycerophospholipid biosynthetic process;0.00165925697681388!GO:0004004;ATP-dependent RNA helicase activity;0.00166967769127382!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0016912753979541!GO:0048500;signal recognition particle;0.00171696027068283!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0017813806501579!GO:0051128;regulation of cellular component organization and biogenesis;0.00182778144702698!GO:0043681;protein import into mitochondrion;0.00195233853193365!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00197620491366059!GO:0030027;lamellipodium;0.00205038323475197!GO:0016044;membrane organization and biogenesis;0.00216356993343555!GO:0043488;regulation of mRNA stability;0.00216969928855788!GO:0043487;regulation of RNA stability;0.00216969928855788!GO:0008610;lipid biosynthetic process;0.00216969928855788!GO:0045045;secretory pathway;0.0023867800925221!GO:0043284;biopolymer biosynthetic process;0.00247286988107137!GO:0006402;mRNA catabolic process;0.00249238115646462!GO:0015631;tubulin binding;0.00250652235979154!GO:0000786;nucleosome;0.00251791787057771!GO:0008180;signalosome;0.0026151412003781!GO:0006695;cholesterol biosynthetic process;0.00261747575522404!GO:0001726;ruffle;0.00270227433168041!GO:0016197;endosome transport;0.00285668336111271!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00286231601165891!GO:0051087;chaperone binding;0.00292470882581819!GO:0005096;GTPase activator activity;0.0029482894625155!GO:0006302;double-strand break repair;0.00320408742203933!GO:0030118;clathrin coat;0.00320777933147827!GO:0008094;DNA-dependent ATPase activity;0.00321526992537482!GO:0030134;ER to Golgi transport vesicle;0.00358670255068295!GO:0048487;beta-tubulin binding;0.003802055445577!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00383637828525796!GO:0045047;protein targeting to ER;0.00383637828525796!GO:0030132;clathrin coat of coated pit;0.0038847862423412!GO:0007264;small GTPase mediated signal transduction;0.00394382215985724!GO:0007052;mitotic spindle organization and biogenesis;0.00394382215985724!GO:0030880;RNA polymerase complex;0.00395974228501182!GO:0008312;7S RNA binding;0.00396423383593029!GO:0051052;regulation of DNA metabolic process;0.00412345901204617!GO:0008139;nuclear localization sequence binding;0.00413498003750837!GO:0051287;NAD binding;0.0042483371178006!GO:0065007;biological regulation;0.00425225730408432!GO:0003684;damaged DNA binding;0.00433884770013807!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0043871969175278!GO:0007088;regulation of mitosis;0.00444908187530603!GO:0030658;transport vesicle membrane;0.00446720548920513!GO:0006383;transcription from RNA polymerase III promoter;0.0046650665432402!GO:0031902;late endosome membrane;0.00483210302405325!GO:0008154;actin polymerization and/or depolymerization;0.00485902977675643!GO:0030521;androgen receptor signaling pathway;0.00489096657156653!GO:0031901;early endosome membrane;0.00499924778475725!GO:0044262;cellular carbohydrate metabolic process;0.00524444031666208!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00555564840068479!GO:0003746;translation elongation factor activity;0.00568419339057345!GO:0017166;vinculin binding;0.0057130116289515!GO:0006289;nucleotide-excision repair;0.006112642426538!GO:0046489;phosphoinositide biosynthetic process;0.00613899056136299!GO:0003711;transcription elongation regulator activity;0.00621097652718602!GO:0030127;COPII vesicle coat;0.00647918089273345!GO:0012507;ER to Golgi transport vesicle membrane;0.00647918089273345!GO:0032984;macromolecular complex disassembly;0.00654274633062616!GO:0005684;U2-dependent spliceosome;0.00685436395769217!GO:0005869;dynactin complex;0.00686967092387901!GO:0035258;steroid hormone receptor binding;0.00703117795583475!GO:0006352;transcription initiation;0.00705742191504452!GO:0004674;protein serine/threonine kinase activity;0.00742332948427278!GO:0016251;general RNA polymerase II transcription factor activity;0.00742332948427278!GO:0006892;post-Golgi vesicle-mediated transport;0.00742332948427278!GO:0051540;metal cluster binding;0.00742335479060291!GO:0051536;iron-sulfur cluster binding;0.00742335479060291!GO:0044452;nucleolar part;0.00755557359648293!GO:0007093;mitotic cell cycle checkpoint;0.00768857332925083!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00776777768054971!GO:0000428;DNA-directed RNA polymerase complex;0.00776777768054971!GO:0031124;mRNA 3'-end processing;0.00785819107543135!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00815689992066568!GO:0006839;mitochondrial transport;0.00817703118106895!GO:0003678;DNA helicase activity;0.00839692346432941!GO:0046483;heterocycle metabolic process;0.00840349296490278!GO:0050662;coenzyme binding;0.00857848233084942!GO:0006401;RNA catabolic process;0.00863641278961147!GO:0015992;proton transport;0.00868825387565813!GO:0000339;RNA cap binding;0.00886159338298413!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00896392542297301!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00896392542297301!GO:0040008;regulation of growth;0.00899168635362326!GO:0007017;microtubule-based process;0.00927676470648833!GO:0030176;integral to endoplasmic reticulum membrane;0.00964969054571988!GO:0006650;glycerophospholipid metabolic process;0.00991280775088467!GO:0065009;regulation of a molecular function;0.00995281647185147!GO:0000082;G1/S transition of mitotic cell cycle;0.0099961452267055!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0100063334700511!GO:0033043;regulation of organelle organization and biogenesis;0.0100063334700511!GO:0006818;hydrogen transport;0.0100199175727989!GO:0030041;actin filament polymerization;0.0100773967996!GO:0006595;polyamine metabolic process;0.0101417748724833!GO:0007006;mitochondrial membrane organization and biogenesis;0.0102966753832675!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0103814620073523!GO:0030660;Golgi-associated vesicle membrane;0.0103988239573572!GO:0006979;response to oxidative stress;0.0104148606687893!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0104313647951441!GO:0003682;chromatin binding;0.010716502186229!GO:0016408;C-acyltransferase activity;0.0108582595803197!GO:0043022;ribosome binding;0.0109958260404226!GO:0009967;positive regulation of signal transduction;0.0109958260404226!GO:0030119;AP-type membrane coat adaptor complex;0.0111358093959298!GO:0005862;muscle thin filament tropomyosin;0.0111577083421605!GO:0022408;negative regulation of cell-cell adhesion;0.011281334719483!GO:0006310;DNA recombination;0.0118722975437495!GO:0008632;apoptotic program;0.0118722975437495!GO:0006984;ER-nuclear signaling pathway;0.0121002091806338!GO:0043241;protein complex disassembly;0.0123843280349926!GO:0046467;membrane lipid biosynthetic process;0.0124902547941692!GO:0006509;membrane protein ectodomain proteolysis;0.0124975305853345!GO:0033619;membrane protein proteolysis;0.0124975305853345!GO:0007021;tubulin folding;0.0125289584759584!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125375199439875!GO:0015002;heme-copper terminal oxidase activity;0.0125375199439875!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125375199439875!GO:0004129;cytochrome-c oxidase activity;0.0125375199439875!GO:0030659;cytoplasmic vesicle membrane;0.01257371966436!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0126859146730403!GO:0016584;nucleosome positioning;0.01282388595486!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.013047583378129!GO:0015399;primary active transmembrane transporter activity;0.013047583378129!GO:0008243;plasminogen activator activity;0.0138694068001938!GO:0031625;ubiquitin protein ligase binding;0.0139341368369761!GO:0045892;negative regulation of transcription, DNA-dependent;0.0139788462998247!GO:0006405;RNA export from nucleus;0.0140710122526604!GO:0050811;GABA receptor binding;0.0141596717445144!GO:0048144;fibroblast proliferation;0.0141971400342701!GO:0048145;regulation of fibroblast proliferation;0.0141971400342701!GO:0009112;nucleobase metabolic process;0.0144123947261781!GO:0003702;RNA polymerase II transcription factor activity;0.0147128197885116!GO:0048146;positive regulation of fibroblast proliferation;0.0147535793009603!GO:0005774;vacuolar membrane;0.0148046928747736!GO:0043624;cellular protein complex disassembly;0.0151104991028684!GO:0050681;androgen receptor binding;0.015148228046739!GO:0006950;response to stress;0.0151673634079244!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0152479877757285!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0152479877757285!GO:0005832;chaperonin-containing T-complex;0.015320868207825!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0154311535211506!GO:0006740;NADPH regeneration;0.0155250947701893!GO:0006098;pentose-phosphate shunt;0.0155250947701893!GO:0005637;nuclear inner membrane;0.015578455046849!GO:0007059;chromosome segregation;0.015578455046849!GO:0007034;vacuolar transport;0.0163230263717759!GO:0008022;protein C-terminus binding;0.0164504233772657!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0165881595817595!GO:0005876;spindle microtubule;0.0167403994757437!GO:0000049;tRNA binding;0.0169578344775159!GO:0000910;cytokinesis;0.0171600488917289!GO:0005938;cell cortex;0.0172859109649477!GO:0045941;positive regulation of transcription;0.0173403066762231!GO:0031323;regulation of cellular metabolic process;0.0175885254187908!GO:0051539;4 iron, 4 sulfur cluster binding;0.0178174849272427!GO:0033673;negative regulation of kinase activity;0.0181016286228758!GO:0006469;negative regulation of protein kinase activity;0.0181016286228758!GO:0008168;methyltransferase activity;0.0181016286228758!GO:0004527;exonuclease activity;0.0181611586387065!GO:0001953;negative regulation of cell-matrix adhesion;0.0184781993204393!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0185223779952106!GO:0007040;lysosome organization and biogenesis;0.0189284232268259!GO:0030833;regulation of actin filament polymerization;0.0189374923074478!GO:0016741;transferase activity, transferring one-carbon groups;0.0189585985715741!GO:0031529;ruffle organization and biogenesis;0.0192268988507001!GO:0009116;nucleoside metabolic process;0.0193743668295913!GO:0044433;cytoplasmic vesicle part;0.0195212978158069!GO:0048518;positive regulation of biological process;0.0195320347622996!GO:0030131;clathrin adaptor complex;0.0195929987278708!GO:0022890;inorganic cation transmembrane transporter activity;0.0203543057643557!GO:0045893;positive regulation of transcription, DNA-dependent;0.0204206825705137!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0207045428827434!GO:0051271;negative regulation of cell motility;0.0207045428827434!GO:0007569;cell aging;0.0207045428827434!GO:0032508;DNA duplex unwinding;0.0207045428827434!GO:0032392;DNA geometric change;0.0207045428827434!GO:0030518;steroid hormone receptor signaling pathway;0.0214448369479831!GO:0001952;regulation of cell-matrix adhesion;0.0215791942195308!GO:0005669;transcription factor TFIID complex;0.0218143865059086!GO:0016272;prefoldin complex;0.0220233561599929!GO:0006376;mRNA splice site selection;0.0221506478074558!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0221506478074558!GO:0031272;regulation of pseudopodium formation;0.022457845461358!GO:0031269;pseudopodium formation;0.022457845461358!GO:0031344;regulation of cell projection organization and biogenesis;0.022457845461358!GO:0031268;pseudopodium organization and biogenesis;0.022457845461358!GO:0031346;positive regulation of cell projection organization and biogenesis;0.022457845461358!GO:0031274;positive regulation of pseudopodium formation;0.022457845461358!GO:0047485;protein N-terminus binding;0.0225136302172666!GO:0006611;protein export from nucleus;0.0233978514841708!GO:0019752;carboxylic acid metabolic process;0.0235113793786444!GO:0007033;vacuole organization and biogenesis;0.0235116751705179!GO:0006268;DNA unwinding during replication;0.0235116751705179!GO:0030125;clathrin vesicle coat;0.0241321399484995!GO:0030665;clathrin coated vesicle membrane;0.0241321399484995!GO:0051348;negative regulation of transferase activity;0.0244884423135478!GO:0042770;DNA damage response, signal transduction;0.0248205785547974!GO:0022406;membrane docking;0.0248320925719426!GO:0048278;vesicle docking;0.0248320925719426!GO:0000209;protein polyubiquitination;0.0250681647091202!GO:0048468;cell development;0.0253503248812489!GO:0035035;histone acetyltransferase binding;0.0255087935651106!GO:0008033;tRNA processing;0.0257578407411996!GO:0006338;chromatin remodeling;0.0262089541878118!GO:0006082;organic acid metabolic process;0.0268772888618118!GO:0006220;pyrimidine nucleotide metabolic process;0.0269268726239133!GO:0033559;unsaturated fatty acid metabolic process;0.0270576289052441!GO:0006636;unsaturated fatty acid biosynthetic process;0.0270576289052441!GO:0006497;protein amino acid lipidation;0.0281574577632909!GO:0019206;nucleoside kinase activity;0.0281574577632909!GO:0006354;RNA elongation;0.0283211857589451!GO:0031123;RNA 3'-end processing;0.0284174649635778!GO:0030384;phosphoinositide metabolic process;0.0286136195714721!GO:0008234;cysteine-type peptidase activity;0.0287350862293607!GO:0006778;porphyrin metabolic process;0.0292466886233076!GO:0033013;tetrapyrrole metabolic process;0.0292466886233076!GO:0000922;spindle pole;0.0295425265509452!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0299656580512368!GO:0030032;lamellipodium biogenesis;0.0301333351395631!GO:0012506;vesicle membrane;0.0301538446599039!GO:0005765;lysosomal membrane;0.0302643869168772!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0305854982971785!GO:0006144;purine base metabolic process;0.0307786144213484!GO:0005099;Ras GTPase activator activity;0.0308035732930751!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0308860392431169!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0308860392431169!GO:0006378;mRNA polyadenylation;0.0310698125862339!GO:0043130;ubiquitin binding;0.0312749133002344!GO:0032182;small conjugating protein binding;0.0312749133002344!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.031289628500427!GO:0003756;protein disulfide isomerase activity;0.0320741470627207!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0320741470627207!GO:0004287;prolyl oligopeptidase activity;0.0321743686431694!GO:0006350;transcription;0.0328744913528563!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0331348797767504!GO:0008097;5S rRNA binding;0.0331348797767504!GO:0006607;NLS-bearing substrate import into nucleus;0.0331780575712463!GO:0008538;proteasome activator activity;0.0334503376929988!GO:0044437;vacuolar part;0.0334558620230197!GO:0016407;acetyltransferase activity;0.0337085562896353!GO:0031543;peptidyl-proline dioxygenase activity;0.0345302260983117!GO:0006007;glucose catabolic process;0.0346356270856947!GO:0016860;intramolecular oxidoreductase activity;0.0346803893506539!GO:0043065;positive regulation of apoptosis;0.035092659835373!GO:0006904;vesicle docking during exocytosis;0.0354546309316808!GO:0005100;Rho GTPase activator activity;0.0354546309316808!GO:0019798;procollagen-proline dioxygenase activity;0.035746886893037!GO:0007030;Golgi organization and biogenesis;0.0359834135213213!GO:0006275;regulation of DNA replication;0.0360481680543859!GO:0005583;fibrillar collagen;0.0360481680543859!GO:0005581;collagen;0.0366224996209839!GO:0005784;translocon complex;0.0375711033961182!GO:0000096;sulfur amino acid metabolic process;0.0386585561698326!GO:0031371;ubiquitin conjugating enzyme complex;0.040243666298348!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0405133032633944!GO:0030508;thiol-disulfide exchange intermediate activity;0.0405133032633944!GO:0043068;positive regulation of programmed cell death;0.0411520774548029!GO:0005801;cis-Golgi network;0.0413503025832763!GO:0045936;negative regulation of phosphate metabolic process;0.0419906001612641!GO:0022411;cellular component disassembly;0.0423643172060208!GO:0001872;zymosan binding;0.0423643172060208!GO:0001878;response to yeast;0.0423643172060208!GO:0008637;apoptotic mitochondrial changes;0.0423643172060208!GO:0022415;viral reproductive process;0.0429154109882104!GO:0004364;glutathione transferase activity;0.0435411492111381!GO:0032940;secretion by cell;0.0441028501415223!GO:0006739;NADP metabolic process;0.0444341582451695!GO:0000781;chromosome, telomeric region;0.0444520850937266!GO:0016125;sterol metabolic process;0.044694236639325!GO:0006118;electron transport;0.0454279350820107!GO:0017134;fibroblast growth factor binding;0.0455906183019032!GO:0008320;protein transmembrane transporter activity;0.0456463662478203!GO:0004563;beta-N-acetylhexosaminidase activity;0.0456463662478203!GO:0046128;purine ribonucleoside metabolic process;0.045709635758851!GO:0042278;purine nucleoside metabolic process;0.045709635758851!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0462875982452929!GO:0031418;L-ascorbic acid binding;0.0464821315338847!GO:0032200;telomere organization and biogenesis;0.0468943797996602!GO:0000723;telomere maintenance;0.0468943797996602!GO:0005758;mitochondrial intermembrane space;0.0469305210956137!GO:0030496;midbody;0.0477077455961924!GO:0030336;negative regulation of cell migration;0.0479209690912679!GO:0040013;negative regulation of locomotion;0.0479209690912679!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0487172241759495!GO:0007041;lysosomal transport;0.0487172241759495!GO:0042158;lipoprotein biosynthetic process;0.0489534705946642 | |||
|sample_id=11249 | |sample_id=11249 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229 | |top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11249-116E7;search_select_hide=table117:FF:11249-116E7 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Pancreatic stromal cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10877 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10877
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10877
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.227 |
| 10 | 10 | 0.515 |
| 100 | 100 | 0.379 |
| 101 | 101 | 0.666 |
| 102 | 102 | 0.155 |
| 103 | 103 | 0.949 |
| 104 | 104 | 0.766 |
| 105 | 105 | 0.416 |
| 106 | 106 | 0.101 |
| 107 | 107 | 0.803 |
| 108 | 108 | 0.324 |
| 109 | 109 | 0.824 |
| 11 | 11 | 0.693 |
| 110 | 110 | 0.431 |
| 111 | 111 | 0.131 |
| 112 | 112 | 0.924 |
| 113 | 113 | 1.12255e-4 |
| 114 | 114 | 0.514 |
| 115 | 115 | 0.213 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.361 |
| 118 | 118 | 0.917 |
| 119 | 119 | 0.105 |
| 12 | 12 | 0.369 |
| 120 | 120 | 0.328 |
| 121 | 121 | 0.343 |
| 122 | 122 | 0.00808 |
| 123 | 123 | 0.00121 |
| 124 | 124 | 0.798 |
| 125 | 125 | 0.606 |
| 126 | 126 | 0.685 |
| 127 | 127 | 0.673 |
| 128 | 128 | 0.838 |
| 129 | 129 | 0.445 |
| 13 | 13 | 0.544 |
| 130 | 130 | 0.115 |
| 131 | 131 | 0.206 |
| 132 | 132 | 0.21 |
| 133 | 133 | 0.183 |
| 134 | 134 | 0.433 |
| 135 | 135 | 0.28 |
| 136 | 136 | 0.997 |
| 137 | 137 | 0.0948 |
| 138 | 138 | 0.0927 |
| 139 | 139 | 2.8164e-5 |
| 14 | 14 | 0.181 |
| 140 | 140 | 0.282 |
| 141 | 141 | 0.0653 |
| 142 | 142 | 0.662 |
| 143 | 143 | 0.486 |
| 144 | 144 | 0.375 |
| 145 | 145 | 0.921 |
| 146 | 146 | 0.726 |
| 147 | 147 | 0.22 |
| 148 | 148 | 0.284 |
| 149 | 149 | 0.386 |
| 15 | 15 | 0.0781 |
| 150 | 150 | 0.269 |
| 151 | 151 | 0.384 |
| 152 | 152 | 0.388 |
| 153 | 153 | 0.874 |
| 154 | 154 | 0.753 |
| 155 | 155 | 6.08828e-4 |
| 156 | 156 | 0.939 |
| 157 | 157 | 0.0577 |
| 158 | 158 | 6.80512e-4 |
| 159 | 159 | 0.179 |
| 16 | 16 | 0.353 |
| 160 | 160 | 0.696 |
| 161 | 161 | 0.602 |
| 162 | 162 | 0.754 |
| 163 | 163 | 0.529 |
| 164 | 164 | 0.888 |
| 165 | 165 | 0.628 |
| 166 | 166 | 0.088 |
| 167 | 167 | 0.342 |
| 168 | 168 | 0.848 |
| 169 | 169 | 0.174 |
| 17 | 17 | 0.615 |
| 18 | 18 | 0.972 |
| 19 | 19 | 0.00308 |
| 2 | 2 | 0.641 |
| 20 | 20 | 0.588 |
| 21 | 21 | 0.0105 |
| 22 | 22 | 0.6 |
| 23 | 23 | 0.376 |
| 24 | 24 | 0.961 |
| 25 | 25 | 0.25 |
| 26 | 26 | 0.707 |
| 27 | 27 | 0.963 |
| 28 | 28 | 0.27 |
| 29 | 29 | 0.679 |
| 3 | 3 | 0.735 |
| 30 | 30 | 0.348 |
| 31 | 31 | 0.898 |
| 32 | 32 | 1.03259e-4 |
| 33 | 33 | 0.757 |
| 34 | 34 | 0.897 |
| 35 | 35 | 0.194 |
| 36 | 36 | 0.0285 |
| 37 | 37 | 0.0789 |
| 38 | 38 | 0.21 |
| 39 | 39 | 0.381 |
| 4 | 4 | 0.0176 |
| 40 | 40 | 0.0304 |
| 41 | 41 | 0.325 |
| 42 | 42 | 0.251 |
| 43 | 43 | 0.347 |
| 44 | 44 | 0.984 |
| 45 | 45 | 0.982 |
| 46 | 46 | 0.622 |
| 47 | 47 | 0.758 |
| 48 | 48 | 0.671 |
| 49 | 49 | 0.0471 |
| 5 | 5 | 0.24 |
| 50 | 50 | 0.342 |
| 51 | 51 | 0.846 |
| 52 | 52 | 0.784 |
| 53 | 53 | 0.262 |
| 54 | 54 | 0.624 |
| 55 | 55 | 0.19 |
| 56 | 56 | 0.913 |
| 57 | 57 | 0.73 |
| 58 | 58 | 0.13 |
| 59 | 59 | 0.722 |
| 6 | 6 | 0.696 |
| 60 | 60 | 0.0886 |
| 61 | 61 | 0.509 |
| 62 | 62 | 0.202 |
| 63 | 63 | 0.868 |
| 64 | 64 | 0.513 |
| 65 | 65 | 0.527 |
| 66 | 66 | 0.862 |
| 67 | 67 | 0.853 |
| 68 | 68 | 0.666 |
| 69 | 69 | 0.448 |
| 7 | 7 | 0.0319 |
| 70 | 70 | 0.0449 |
| 71 | 71 | 0.503 |
| 72 | 72 | 0.684 |
| 73 | 73 | 0.34 |
| 74 | 74 | 0.082 |
| 75 | 75 | 0.77 |
| 76 | 76 | 0.846 |
| 77 | 77 | 0.331 |
| 78 | 78 | 0.071 |
| 79 | 79 | 0.048 |
| 8 | 8 | 0.933 |
| 80 | 80 | 0.104 |
| 81 | 81 | 0.524 |
| 82 | 82 | 0.575 |
| 83 | 83 | 0.125 |
| 84 | 84 | 0.994 |
| 85 | 85 | 0.359 |
| 86 | 86 | 0.288 |
| 87 | 87 | 0.137 |
| 88 | 88 | 0.335 |
| 89 | 89 | 0.781 |
| 9 | 9 | 0.582 |
| 90 | 90 | 0.113 |
| 91 | 91 | 0.772 |
| 92 | 92 | 0.711 |
| 93 | 93 | 0.385 |
| 94 | 94 | 0.436 |
| 95 | 95 | 0.202 |
| 96 | 96 | 0.298 |
| 97 | 97 | 0.545 |
| 98 | 98 | 0.122 |
| 99 | 99 | 0.00261 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10877
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000042 pancreatic stromal cell
FF:0000146 human stromal cell of pancreas sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002574 (stromal cell of pancreas)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000042 (pancreatic stromal cell)
0000146 (human stromal cell of pancreas sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
