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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004865
|DRA_sample_Accession=CAGE@SAMD00004865
|accession_numbers=CAGE;DRX008101;DRR008973;DRZ000398;DRZ001783
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004865
|accession_numbers=CAGE;DRX008101;DRR008973;DRZ000398;DRZ001783;DRZ011748;DRZ013133
|accession_numbers_RNASeq=sRNA-Seq;DRX037226;DRR041592;DRZ007234
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.ctss.bed.gz
|id=FF:11259-116F8
|id=FF:11259-116F8
|is_a=EFO:0002091;;FF:0000011
|is_a=EFO:0002091;;FF:0000011
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|library_id=CNhs12494
|library_id=CNhs12494
|library_id_phase_based=2:CNhs12494
|library_id_phase_based=2:CNhs12494
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11259
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGATGT.11259
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11259
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGATGT.11259
|name=Adipocyte - subcutaneous, donor1
|name=Adipocyte - subcutaneous, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=TFAP4:2.36034055523;GLI1..3:2.12738313313;XBP1:2.02781732149;LHX3,4:1.98909102925;SRF:1.94296152425;IKZF1:1.7671815868;NR6A1:1.62421868262;ESRRA:1.57615473629;HES1:1.57298035224;TAL1_TCF{3,4,12}:1.40376413399;AR:1.39256838491;MAFB:1.37046053997;ZNF238:1.30733063883;SMAD1..7,9:1.29382614583;TFCP2:1.25231011866;ATF6:1.23346998095;TBP:1.22129327134;ESR1:1.1501856649;NR5A1,2:1.0703045304;PPARG:1.04880785106;UFEwm:1.03198607488;DBP:1.0111653191;GZF1:0.985645557005;HOX{A5,B5}:0.907839496229;HNF4A_NR2F1,2:0.871720469467;NR3C1:0.868885666338;NANOG{mouse}:0.785096902089;NKX3-1:0.777482904251;EBF1:0.775703733462;HOX{A6,A7,B6,B7}:0.767593728519;ZNF148:0.76503457663;STAT5{A,B}:0.762221744401;NR1H4:0.733665316706;STAT2,4,6:0.646844998895;ZNF423:0.641656366965;GCM1,2:0.585283913561;ALX4:0.575729694201;TLX1..3_NFIC{dimer}:0.54771672909;TP53:0.534811639354;PAX1,9:0.532010155536;HAND1,2:0.502455997411;GTF2A1,2:0.489385590213;PAX5:0.487935492461;NKX3-2:0.478039822458;TEAD1:0.425563113924;MYBL2:0.409279004798;RXRA_VDR{dimer}:0.399980936753;HLF:0.357146434924;ZIC1..3:0.35194934581;NKX2-2,8:0.310062481903;RORA:0.309383242455;HIF1A:0.285362429437;NHLH1,2:0.249560969907;bHLH_family:0.24277046815;SPZ1:0.233343232061;NKX2-3_NKX2-5:0.230565870444;NFE2L1:0.211681744026;PAX3,7:0.151452507675;GFI1:0.122706082044;MTF1:0.122574955034;FOXA2:0.120995746194;CRX:0.120496697129;GTF2I:0.0986008501177;GFI1B:0.0984555720573;HNF1A:0.0859695806983;T:0.0808302932955;FOXL1:0.0688836942369;TFAP2{A,C}:0.0679929160807;REST:0.0610494902222;EVI1:0.0465646848778;LEF1_TCF7_TCF7L1,2:0.0285507191274;KLF4:0.0141340041767;MYFfamily:-0.0108242117795;ARID5B:-0.0114886904783;SOX5:-0.015923573497;PAX6:-0.0167180651646;ZBTB6:-0.0205568558161;MEF2{A,B,C,D}:-0.0280013456978;NFE2L2:-0.0415414802794;NFE2:-0.0664448705083;RXR{A,B,G}:-0.0784668815285;TOPORS:-0.0980041741279;PATZ1:-0.144167597331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.151124818938;HIC1:-0.163970365052;ADNP_IRX_SIX_ZHX:-0.187922172493;YY1:-0.190421496813;PRRX1,2:-0.209036432128;BACH2:-0.210310174003;MAZ:-0.211564289037;TGIF1:-0.22656645995;NFKB1_REL_RELA:-0.234143295759;POU2F1..3:-0.238959390181;HOX{A4,D4}:-0.259577182727;PBX1:-0.262318717006;ONECUT1,2:-0.26501162009;FOS_FOS{B,L1}_JUN{B,D}:-0.267818056282;CEBPA,B_DDIT3:-0.274041445984;NFATC1..3:-0.275631498356;GATA6:-0.282128695798;FOSL2:-0.334547714967;PAX2:-0.338255192838;EN1,2:-0.344400245261;POU6F1:-0.344827548062;GATA4:-0.35991055101;LMO2:-0.383149596248;MYB:-0.407657821524;ATF2:-0.428418317815;RUNX1..3:-0.45311852915;MYOD1:-0.463335394702;SOX17:-0.463398063933;PAX8:-0.469167216358;NFIL3:-0.487908693996;OCT4_SOX2{dimer}:-0.49412164441;NKX2-1,4:-0.536414978839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.541345720733;RREB1:-0.548609549941;POU3F1..4:-0.56060092541;SNAI1..3:-0.565536394256;JUN:-0.566179917692;MTE{core}:-0.57497038382;ZEB1:-0.580047626416;NFY{A,B,C}:-0.58517843215;ALX1:-0.594668722804;PRDM1:-0.608789395044;HMGA1,2:-0.619082989444;TEF:-0.654028189318;ETS1,2:-0.659421229466;ZNF384:-0.665444392052;TFAP2B:-0.671666355198;SPIB:-0.676176019878;VSX1,2:-0.683679007196;FOX{D1,D2}:-0.716399387879;NFIX:-0.72997398831;FOXP3:-0.744691914036;POU5F1:-0.753081795683;SPI1:-0.759783986124;ATF5_CREB3:-0.764331507505;TBX4,5:-0.769864584899;SOX{8,9,10}:-0.770804477926;NANOG:-0.782909707306;RFX1:-0.801625417764;PAX4:-0.802686065528;HSF1,2:-0.814446937524;SREBF1,2:-0.818477823309;MED-1{core}:-0.83317115181;PDX1:-0.836503275901;HMX1:-0.839776435121;HOXA9_MEIS1:-0.857980868854;IRF1,2:-0.867670920679;PITX1..3:-0.874423565236;IRF7:-0.892377323264;ZNF143:-0.937948095605;CUX2:-0.948535901781;DMAP1_NCOR{1,2}_SMARC:-0.95394821172;FOXD3:-0.966170101558;MZF1:-0.977126207708;BREu{core}:-0.999252479715;NRF1:-1.00422274007;TLX2:-1.00725647446;POU1F1:-1.02341958899;IKZF2:-1.02647588258;SOX2:-1.04992561748;STAT1,3:-1.05409545196;AHR_ARNT_ARNT2:-1.08955568814;FOXO1,3,4:-1.10704380836;ZBTB16:-1.12992998119;CDC5L:-1.15009787239;FOXM1:-1.15417164832;SP1:-1.17448739174;EGR1..3:-1.18968508856;ELF1,2,4:-1.2151039658;E2F1..5:-1.33818833858;FOX{F1,F2,J1}:-1.37313558247;RFX2..5_RFXANK_RFXAP:-1.37770832928;BPTF:-1.39526437538;ZFP161:-1.40629001269;CREB1:-1.41695106579;ATF4:-1.44839797974;XCPE1{core}:-1.56391264143;TFDP1:-1.60591973744;EP300:-1.74104134203;CDX1,2,4:-1.75293354902;ELK1,4_GABP{A,B1}:-1.77308720762;FOXP1:-1.80623170918;HBP1_HMGB_SSRP1_UBTF:-1.88085904455;FOXN1:-2.03804072397;FOXQ1:-2.11412731609;FOX{I1,J2}:-2.16799268121;AIRE:-2.20090256705;RBPJ:-2.48822936235;NKX6-1,2:-2.66218675951
|top_motifs=TFAP4:2.36034055523;GLI1..3:2.12738313313;XBP1:2.02781732149;LHX3,4:1.98909102925;SRF:1.94296152425;IKZF1:1.7671815868;NR6A1:1.62421868262;ESRRA:1.57615473629;HES1:1.57298035224;TAL1_TCF{3,4,12}:1.40376413399;AR:1.39256838491;MAFB:1.37046053997;ZNF238:1.30733063883;SMAD1..7,9:1.29382614583;TFCP2:1.25231011866;ATF6:1.23346998095;TBP:1.22129327134;ESR1:1.1501856649;NR5A1,2:1.0703045304;PPARG:1.04880785106;UFEwm:1.03198607488;DBP:1.0111653191;GZF1:0.985645557005;HOX{A5,B5}:0.907839496229;HNF4A_NR2F1,2:0.871720469467;NR3C1:0.868885666338;NANOG{mouse}:0.785096902089;NKX3-1:0.777482904251;EBF1:0.775703733462;HOX{A6,A7,B6,B7}:0.767593728519;ZNF148:0.76503457663;STAT5{A,B}:0.762221744401;NR1H4:0.733665316706;STAT2,4,6:0.646844998895;ZNF423:0.641656366965;GCM1,2:0.585283913561;ALX4:0.575729694201;TLX1..3_NFIC{dimer}:0.54771672909;TP53:0.534811639354;PAX1,9:0.532010155536;HAND1,2:0.502455997411;GTF2A1,2:0.489385590213;PAX5:0.487935492461;NKX3-2:0.478039822458;TEAD1:0.425563113924;MYBL2:0.409279004798;RXRA_VDR{dimer}:0.399980936753;HLF:0.357146434924;ZIC1..3:0.35194934581;NKX2-2,8:0.310062481903;RORA:0.309383242455;HIF1A:0.285362429437;NHLH1,2:0.249560969907;bHLH_family:0.24277046815;SPZ1:0.233343232061;NKX2-3_NKX2-5:0.230565870444;NFE2L1:0.211681744026;PAX3,7:0.151452507675;GFI1:0.122706082044;MTF1:0.122574955034;FOXA2:0.120995746194;CRX:0.120496697129;GTF2I:0.0986008501177;GFI1B:0.0984555720573;HNF1A:0.0859695806983;T:0.0808302932955;FOXL1:0.0688836942369;TFAP2{A,C}:0.0679929160807;REST:0.0610494902222;EVI1:0.0465646848778;LEF1_TCF7_TCF7L1,2:0.0285507191274;KLF4:0.0141340041767;MYFfamily:-0.0108242117795;ARID5B:-0.0114886904783;SOX5:-0.015923573497;PAX6:-0.0167180651646;ZBTB6:-0.0205568558161;MEF2{A,B,C,D}:-0.0280013456978;NFE2L2:-0.0415414802794;NFE2:-0.0664448705083;RXR{A,B,G}:-0.0784668815285;TOPORS:-0.0980041741279;PATZ1:-0.144167597331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.151124818938;HIC1:-0.163970365052;ADNP_IRX_SIX_ZHX:-0.187922172493;YY1:-0.190421496813;PRRX1,2:-0.209036432128;BACH2:-0.210310174003;MAZ:-0.211564289037;TGIF1:-0.22656645995;NFKB1_REL_RELA:-0.234143295759;POU2F1..3:-0.238959390181;HOX{A4,D4}:-0.259577182727;PBX1:-0.262318717006;ONECUT1,2:-0.26501162009;FOS_FOS{B,L1}_JUN{B,D}:-0.267818056282;CEBPA,B_DDIT3:-0.274041445984;NFATC1..3:-0.275631498356;GATA6:-0.282128695798;FOSL2:-0.334547714967;PAX2:-0.338255192838;EN1,2:-0.344400245261;POU6F1:-0.344827548062;GATA4:-0.35991055101;LMO2:-0.383149596248;MYB:-0.407657821524;ATF2:-0.428418317815;RUNX1..3:-0.45311852915;MYOD1:-0.463335394702;SOX17:-0.463398063933;PAX8:-0.469167216358;NFIL3:-0.487908693996;OCT4_SOX2{dimer}:-0.49412164441;NKX2-1,4:-0.536414978839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.541345720733;RREB1:-0.548609549941;POU3F1..4:-0.56060092541;SNAI1..3:-0.565536394256;JUN:-0.566179917692;MTE{core}:-0.57497038382;ZEB1:-0.580047626416;NFY{A,B,C}:-0.58517843215;ALX1:-0.594668722804;PRDM1:-0.608789395044;HMGA1,2:-0.619082989444;TEF:-0.654028189318;ETS1,2:-0.659421229466;ZNF384:-0.665444392052;TFAP2B:-0.671666355198;SPIB:-0.676176019878;VSX1,2:-0.683679007196;FOX{D1,D2}:-0.716399387879;NFIX:-0.72997398831;FOXP3:-0.744691914036;POU5F1:-0.753081795683;SPI1:-0.759783986124;ATF5_CREB3:-0.764331507505;TBX4,5:-0.769864584899;SOX{8,9,10}:-0.770804477926;NANOG:-0.782909707306;RFX1:-0.801625417764;PAX4:-0.802686065528;HSF1,2:-0.814446937524;SREBF1,2:-0.818477823309;MED-1{core}:-0.83317115181;PDX1:-0.836503275901;HMX1:-0.839776435121;HOXA9_MEIS1:-0.857980868854;IRF1,2:-0.867670920679;PITX1..3:-0.874423565236;IRF7:-0.892377323264;ZNF143:-0.937948095605;CUX2:-0.948535901781;DMAP1_NCOR{1,2}_SMARC:-0.95394821172;FOXD3:-0.966170101558;MZF1:-0.977126207708;BREu{core}:-0.999252479715;NRF1:-1.00422274007;TLX2:-1.00725647446;POU1F1:-1.02341958899;IKZF2:-1.02647588258;SOX2:-1.04992561748;STAT1,3:-1.05409545196;AHR_ARNT_ARNT2:-1.08955568814;FOXO1,3,4:-1.10704380836;ZBTB16:-1.12992998119;CDC5L:-1.15009787239;FOXM1:-1.15417164832;SP1:-1.17448739174;EGR1..3:-1.18968508856;ELF1,2,4:-1.2151039658;E2F1..5:-1.33818833858;FOX{F1,F2,J1}:-1.37313558247;RFX2..5_RFXANK_RFXAP:-1.37770832928;BPTF:-1.39526437538;ZFP161:-1.40629001269;CREB1:-1.41695106579;ATF4:-1.44839797974;XCPE1{core}:-1.56391264143;TFDP1:-1.60591973744;EP300:-1.74104134203;CDX1,2,4:-1.75293354902;ELK1,4_GABP{A,B1}:-1.77308720762;FOXP1:-1.80623170918;HBP1_HMGB_SSRP1_UBTF:-1.88085904455;FOXN1:-2.03804072397;FOXQ1:-2.11412731609;FOX{I1,J2}:-2.16799268121;AIRE:-2.20090256705;RBPJ:-2.48822936235;NKX6-1,2:-2.66218675951
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11259-116F8;search_select_hide=table117:FF:11259-116F8
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Adipocyte - subcutaneous, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12494
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stage53 years old adult
sexfemale
age53
cell typeadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1377
catalog numberCA803sD-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004865
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12494 CAGE DRX008101 DRR008973
Accession ID Hg19

Library idBAMCTSS
CNhs12494 DRZ000398 DRZ001783
Accession ID Hg38

Library idBAMCTSS
CNhs12494 DRZ011748 DRZ013133
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004865
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.CGATGT sRNA-Seq DRX037226 DRR041592
Accession ID Hg19

Library idBAMCTSS
SRhi10014.CGATGT DRZ007234


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.548
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.783
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0247
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.548
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.396
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose1.314
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.403
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.548
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.172
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.257
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.548
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.666
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.454
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.548
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.934
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.548
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12494

Jaspar motifP-value
MA0002.20.104
MA0003.10.0763
MA0004.10.904
MA0006.10.473
MA0007.10.0904
MA0009.10.52
MA0014.10.844
MA0017.10.0589
MA0018.25.57547e-4
MA0019.10.884
MA0024.10.00132
MA0025.10.121
MA0027.10.574
MA0028.10.0132
MA0029.10.547
MA0030.10.0867
MA0031.10.118
MA0035.20.929
MA0038.10.853
MA0039.20.529
MA0040.10.911
MA0041.10.309
MA0042.10.574
MA0043.10.00391
MA0046.10.45
MA0047.20.774
MA0048.10.984
MA0050.18.16403e-5
MA0051.10.00411
MA0052.10.227
MA0055.10.559
MA0057.10.142
MA0058.10.99
MA0059.10.146
MA0060.10.114
MA0061.10.503
MA0062.24.032e-6
MA0065.24.39726e-4
MA0066.10.0334
MA0067.10.0847
MA0068.10.425
MA0069.10.0873
MA0070.10.756
MA0071.10.0919
MA0072.10.0689
MA0073.10.889
MA0074.10.395
MA0076.14.96297e-4
MA0077.10.643
MA0078.10.405
MA0079.20.589
MA0080.24.7612e-5
MA0081.10.0415
MA0083.10.00162
MA0084.10.266
MA0087.10.624
MA0088.10.358
MA0090.10.0684
MA0091.10.00545
MA0092.10.0282
MA0093.10.962
MA0099.20.857
MA0100.10.665
MA0101.10.518
MA0102.20.0593
MA0103.10.74
MA0104.20.956
MA0105.10.092
MA0106.10.239
MA0107.10.631
MA0108.27.36763e-4
MA0111.10.908
MA0112.29.93034e-6
MA0113.10.089
MA0114.10.0178
MA0115.10.812
MA0116.10.0333
MA0117.10.803
MA0119.10.0311
MA0122.10.851
MA0124.10.963
MA0125.10.35
MA0131.10.15
MA0135.10.987
MA0136.12.87092e-10
MA0137.20.532
MA0138.20.0037
MA0139.10.672
MA0140.10.649
MA0141.10.0206
MA0142.10.875
MA0143.10.969
MA0144.10.252
MA0145.10.105
MA0146.10.142
MA0147.10.83
MA0148.10.165
MA0149.10.2
MA0150.10.655
MA0152.10.915
MA0153.10.375
MA0154.10.0441
MA0155.10.112
MA0156.15.39872e-6
MA0157.10.359
MA0159.10.106
MA0160.10.0968
MA0162.10.0479
MA0163.10.00254
MA0164.10.947
MA0258.15.98958e-4
MA0259.10.94



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12494

Novel motifP-value
10.113
100.341
1000.735
1010.859
1020.599
1030.156
1040.256
1050.438
1060.0409
1070.207
1080.268
1090.199
110.0413
1100.147
1110.0714
1120.355
1130.613
1140.233
1150.00545
1160.188
1170.761
1180.48
1190.0484
120.814
1200.866
1210.595
1220.745
1230.712
1240.183
1250.198
1260.629
1270.202
1280.0822
1290.0846
130.394
1300.986
1310.391
1320.737
1330.303
1340.842
1350.318
1360.978
1370.445
1380.947
1390.242
140.968
1400.502
1410.527
1420.68
1430.0576
1440.839
1450.671
1460.546
1470.399
1480.0788
1490.0169
150.191
1500.376
1510.521
1520.26
1530.702
1540.952
1550.922
1560.731
1570.33
1580.541
1590.648
160.113
1600.0153
1610.262
1620.198
1630.401
1640.367
1650.497
1660.435
1670.897
1680.209
1690.00965
170.17
180.152
190.0267
20.289
200.658
210.245
220.18
230.13
240.397
250.762
260.163
270.114
280.43
290.498
30.385
300.668
310.311
326.30794e-7
330.574
340.556
350.386
360.467
370.236
380.559
390.295
40.383
400.121
410.216
420.974
430.129
440.219
450.488
460.0594
470.237
480.267
490.132
50.175
500.934
510.334
520.301
530.892
540.521
550.378
560.727
570.25
580.409
590.0748
60.228
600.227
610.722
620.276
630.16
640.238
650.0823
660.93
670.297
680.0579
690.162
70.543
700.0299
710.0453
720.988
730.173
740.858
750.461
760.698
770.0324
780.25
790.197
80.0567
800.645
810.273
820.0558
830.315
840.23
850.0252
860.776
870.255
880.675
890.0236
90.308
900.639
910.214
920.14
930.3
940.155
950.522
960.348
970.612
980.225
990.12



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12494


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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