FF:11259-116F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004865 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004865 | |||
|accession_numbers=CAGE;DRX008101;DRR008973;DRZ000398;DRZ001783;DRZ011748;DRZ013133 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037226;DRR041592;DRZ007234 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000011 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11259-116F8 | |id=FF:11259-116F8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000011 | ||
|is_obsolete= | |||
|library_id=CNhs12494 | |||
|library_id_phase_based=2:CNhs12494 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11259 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGATGT.11259 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11259 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGATGT.11259 | |||
|name=Adipocyte - subcutaneous, donor1 | |name=Adipocyte - subcutaneous, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12494,LSID916,release011,COMPLETED | |profile_hcage=CNhs12494,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.413597999624805,0.74791693066463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.893249997191974,0,0,0,0,0,1.49305082487992,0,0,1.24356542071701,0,0,0,0,0,0,0,0,0,0,0,0,0.245551398796052,0.734680156285076,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,1.27952964925327,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.335401262845322,0,0,0,-0.0584468268118252,0.452624979572152,0,0.548143487673058,0.274071743836529,0,-0.0980353512377064,0.703399264250042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.548143487673058,0,0,0.317991509058802,0.414043507712773,0,0,0.465718994926297,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.548143487673058,0,0,-0.247178875285564,0,-0.474086218752008,-0.143515142523472,0,0,-0.153207343073041,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,0.732489679934815,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.00383107450220499,0,0.427264003879318,-0.0827201683234173,-0.221611588102807,-0.037400298603817,-0.055712496781182,0,0,0,-0.119202125389153,-1.01837891339289,0,0,0.152291892084655,0.09272212527587,0,0,-0.391044581551635,0,0.308089115021981,0.0570291365364705,0,-0.00126908860102193,0,0,0,0,0,0.548143487673058,0,0,0,0,0,0.409730415355965,-0.326988596678969,-0.0304099808375785,0,0,0,-0.758674645039351,0,0,0.954358608579476,-0.269631976484861,-0.107538914243308,0.122377826893602,0,-0.302389727009913,0.0461919098321715,-0.539018558642159,0.257536133692117,0.40074163830192,-0.189981719549847,0,-0.435878201552346,-0.786272629114012,-0.093086116981517,0.0533402109763625,-0.00597078353915935,0.0411522578402688,-0.153293604821597,0,0,0,0.169303977117373,0,-0.292498286049855,-0.490114714476774,-0.0278120007654751,0.185589662021638,-0.11621555536067,0.399018057277787,-0.447177541537249,-0.0395325284566706,-0.457436452896595,0,0.214708058159987,0,0.548143487673058,-0.090104171961993,-0.079893957474569,-0.785912107107322,-0.615826173178679,0,-0.483977461810981,-0.0683442610773682,0,0.215012972648813,-0.0756922467614634,0,0.260214484498934,-0.578777230871412,0,0,0,0,0,-0.277934152390626,-0.539492143030166,0.315287926117514,0,-0.217782906935055,-0.306401478676107,0.0941650354094785,0,-0.843944673398126,-0.146009897457394,0,0.198353737984098,-0.0334678488594955,0.31017238421333,0.237785895406689,0.267069514800961,0.905249959144305,-0.0584468268118252,-0.182328446102673,-0.160237164077267,0.166491200701263,0.257633142750175,0,0.460016655197771,0,-0.335401262845322,-0.679498131621524,-0.154709651609437,-0.583529904229572,0,0.241501722353504,0,-1.00562876449217,0,-0.0970638991427405,0.669027447166467,0.343612856943444,0.0611930216554715,0,0.201983329448346,0.146316826580828,0,0.060155382155128,-0.0371189976112246,0,-0.150367083334639,-0.149552478839524,-0.211650427864589,0.135082287157335,0,-0.241936670716598,0,0,0.395858093526413,-0.235476037764389,0,0.466877275575963,0.325244850141406,-0.0560725535222362,-0.115971073434934,0.548143487673058,0,0.137201893531405,0,0.78290223152413,0.440644943722372,0,-0.619783323958633,-0.253326341486756,0.086835947186293,0.282828306307809,0,0,-0.177527765965176,0,-0.320937246717688,0,0,-0.249881296598824,-0.0285495069328204,0,0,0,-0.195265690557764,0,0,0,0,0,0,0,-0.351627804448526,0.19331015745661,0,0,0,0.548143487673058,0,0,0,0,0,0,0.496102742572403,-0.177399751077834,0.425126071996638,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.49942501046881,0,0,0,0.858655040827026,0,0,0,0,-0.525862126998378,0,0,0,0,0.307900201285433,-0.0815818795468414,0,0.293957849968939,0.559521621650711,-0.761476852975403,0,0.548143487673058,-0.261347131789888,0,0,-0.253042090109117,0.292883146986007,0.548143487673058,-0.0209247759461169,0,0,0,0,0,0.548143487673058,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.224756571510713,0.455919431014548,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.203707246075852,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,1.27952964925327,0,0,0,0,1.49583386132926,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.413597999624805,0,0,0,0,0,0,0,0.659614466148712,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27015619639452,0,0.49569471555122,-0.0609496672608087,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548143487673058,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,1.49305082487992,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.287976840656709,0.184003482354254,-0.0733093927996436,0,0,0,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.893249997191974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12944273037107,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.934447764354802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.734680156285076,0,0.463766855443031,0,0,0,0,0,0.78290223152413,0,0,0,0,0,0.548143487673058,0,0,0,0,1.44856971686857,0,0,0,0,0.50050637701214,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07403415624754,0,0,0.709703020102797,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.20946119863971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334584513851835,0.414043507712773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA803sD-R10a | |rna_catalog_number=CA803sD-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116F8 | |rna_tube_id=116F8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.CGATGT | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.45997170304304e-261!GO:0005737;cytoplasm;2.67868726270323e-201!GO:0044444;cytoplasmic part;2.80639949386199e-171!GO:0044422;organelle part;9.24717775420477e-116!GO:0043231;intracellular membrane-bound organelle;2.13861906836989e-115!GO:0043227;membrane-bound organelle;3.57344237825851e-115!GO:0043226;organelle;5.93136490586229e-115!GO:0044446;intracellular organelle part;9.39036646224624e-115!GO:0043229;intracellular organelle;1.08052809360712e-114!GO:0005739;mitochondrion;2.27886522762832e-96!GO:0032991;macromolecular complex;1.45561580654673e-79!GO:0030529;ribonucleoprotein complex;1.64091751980452e-75!GO:0009058;biosynthetic process;1.62267288001573e-64!GO:0044429;mitochondrial part;4.65449554978559e-62!GO:0031090;organelle membrane;1.92231701285027e-60!GO:0005515;protein binding;3.20679710883809e-59!GO:0044249;cellular biosynthetic process;2.74055244350716e-56!GO:0044237;cellular metabolic process;2.78252918493391e-56!GO:0043233;organelle lumen;1.45490308996865e-55!GO:0031974;membrane-enclosed lumen;1.45490308996865e-55!GO:0044238;primary metabolic process;9.72840732288943e-53!GO:0005840;ribosome;9.94973785075105e-52!GO:0003723;RNA binding;6.22952382026856e-49!GO:0006412;translation;1.80631533692886e-48!GO:0009059;macromolecule biosynthetic process;8.7653186338055e-47!GO:0003735;structural constituent of ribosome;4.9767980133877e-46!GO:0031967;organelle envelope;6.86214907094084e-46!GO:0031975;envelope;1.54548495766445e-45!GO:0005829;cytosol;2.29948475652412e-43!GO:0005740;mitochondrial envelope;1.02418102048633e-42!GO:0019538;protein metabolic process;2.02150269810212e-42!GO:0031966;mitochondrial membrane;3.35704549431217e-41!GO:0033279;ribosomal subunit;5.05754203499453e-39!GO:0043234;protein complex;2.06226119024623e-38!GO:0044428;nuclear part;2.06226119024623e-38!GO:0044260;cellular macromolecule metabolic process;2.5882657061244e-38!GO:0016043;cellular component organization and biogenesis;6.24068197470821e-37!GO:0044267;cellular protein metabolic process;1.3135333873284e-36!GO:0043170;macromolecule metabolic process;4.50714677996554e-36!GO:0019866;organelle inner membrane;6.74835433913682e-36!GO:0005743;mitochondrial inner membrane;2.90923884394714e-35!GO:0015031;protein transport;3.14409353804881e-34!GO:0033036;macromolecule localization;3.55284702342867e-34!GO:0045184;establishment of protein localization;3.64697110247614e-33!GO:0008104;protein localization;2.59401239508421e-32!GO:0006396;RNA processing;3.53262241510205e-32!GO:0005783;endoplasmic reticulum;2.12123591213828e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.21178117662824e-28!GO:0046907;intracellular transport;4.61961821719612e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.60693921369539e-26!GO:0044455;mitochondrial membrane part;4.05197495872212e-26!GO:0051186;cofactor metabolic process;4.3171667706273e-26!GO:0065003;macromolecular complex assembly;5.1688580095492e-26!GO:0006119;oxidative phosphorylation;8.07250899514508e-26!GO:0016071;mRNA metabolic process;2.65478113771528e-25!GO:0031980;mitochondrial lumen;3.96511036552345e-25!GO:0005759;mitochondrial matrix;3.96511036552345e-25!GO:0016491;oxidoreductase activity;9.24755533473796e-24!GO:0006886;intracellular protein transport;1.16773463678346e-23!GO:0008380;RNA splicing;1.50276571768807e-23!GO:0031981;nuclear lumen;1.9129407253596e-23!GO:0044432;endoplasmic reticulum part;2.42417374926127e-23!GO:0044445;cytosolic part;2.57669711294235e-23!GO:0022607;cellular component assembly;1.13049816890272e-22!GO:0006397;mRNA processing;1.12466253581507e-21!GO:0012505;endomembrane system;2.27930417486684e-21!GO:0006732;coenzyme metabolic process;2.88995403085775e-21!GO:0005746;mitochondrial respiratory chain;6.23873688399272e-21!GO:0015934;large ribosomal subunit;2.34520660211627e-20!GO:0015935;small ribosomal subunit;1.08002042342873e-19!GO:0006457;protein folding;1.00494010466523e-18!GO:0006091;generation of precursor metabolites and energy;5.03146276139561e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.66233588137512e-18!GO:0005681;spliceosome;9.71599377768626e-18!GO:0051649;establishment of cellular localization;1.62631906556235e-17!GO:0050136;NADH dehydrogenase (quinone) activity;2.43392535192094e-17!GO:0003954;NADH dehydrogenase activity;2.43392535192094e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.43392535192094e-17!GO:0051641;cellular localization;2.96727027124926e-17!GO:0009055;electron carrier activity;3.46507181412218e-17!GO:0048770;pigment granule;3.65725382298342e-17!GO:0042470;melanosome;3.65725382298342e-17!GO:0044248;cellular catabolic process;5.39092517266523e-17!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.52876675424055e-17!GO:0006996;organelle organization and biogenesis;1.78937913415529e-16!GO:0022618;protein-RNA complex assembly;2.08092493606113e-16!GO:0005789;endoplasmic reticulum membrane;2.11815670075511e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.03510181996098e-16!GO:0042775;organelle ATP synthesis coupled electron transport;5.96428003403606e-16!GO:0042773;ATP synthesis coupled electron transport;5.96428003403606e-16!GO:0030964;NADH dehydrogenase complex (quinone);1.18806316264896e-15!GO:0045271;respiratory chain complex I;1.18806316264896e-15!GO:0005747;mitochondrial respiratory chain complex I;1.18806316264896e-15!GO:0043228;non-membrane-bound organelle;1.32758446444772e-15!GO:0043232;intracellular non-membrane-bound organelle;1.32758446444772e-15!GO:0005761;mitochondrial ribosome;1.4065351615041e-15!GO:0000313;organellar ribosome;1.4065351615041e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.0431935377065e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.24244849169097e-15!GO:0051082;unfolded protein binding;6.33161365824431e-15!GO:0008135;translation factor activity, nucleic acid binding;1.02542513660083e-14!GO:0005634;nucleus;1.79059759227794e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.9921397515432e-14!GO:0005794;Golgi apparatus;3.08420202766748e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.08727795643488e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.35733275092398e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79444189372677e-13!GO:0016462;pyrophosphatase activity;2.13424596490607e-13!GO:0017111;nucleoside-triphosphatase activity;2.95882719742767e-13!GO:0006082;organic acid metabolic process;3.21585775590012e-13!GO:0019752;carboxylic acid metabolic process;5.69039515192481e-13!GO:0000166;nucleotide binding;6.96713997964572e-13!GO:0005654;nucleoplasm;1.04979787035019e-12!GO:0006605;protein targeting;1.2295182939262e-12!GO:0016874;ligase activity;1.32597349606001e-12!GO:0005730;nucleolus;1.94534827936522e-12!GO:0009057;macromolecule catabolic process;1.95088653307901e-12!GO:0044265;cellular macromolecule catabolic process;2.35406970479252e-12!GO:0048193;Golgi vesicle transport;8.24235359144096e-12!GO:0043285;biopolymer catabolic process;8.27888779339739e-12!GO:0051188;cofactor biosynthetic process;1.36765503062137e-11!GO:0009056;catabolic process;1.64335950453757e-11!GO:0016192;vesicle-mediated transport;1.73971326038213e-11!GO:0044451;nucleoplasm part;1.89284145452947e-11!GO:0012501;programmed cell death;2.52958015511178e-11!GO:0006413;translational initiation;2.73050747183801e-11!GO:0003743;translation initiation factor activity;3.47835457107604e-11!GO:0044262;cellular carbohydrate metabolic process;3.97878483596959e-11!GO:0008134;transcription factor binding;4.32270984168297e-11!GO:0009259;ribonucleotide metabolic process;4.73476867253697e-11!GO:0008219;cell death;5.40811309506062e-11!GO:0016265;death;5.40811309506062e-11!GO:0006915;apoptosis;5.40811309506062e-11!GO:0009150;purine ribonucleotide metabolic process;6.96115225269054e-11!GO:0009199;ribonucleoside triphosphate metabolic process;9.14095038487471e-11!GO:0006163;purine nucleotide metabolic process;1.31118778799207e-10!GO:0005793;ER-Golgi intermediate compartment;1.38780923265695e-10!GO:0009141;nucleoside triphosphate metabolic process;1.38819665331903e-10!GO:0006446;regulation of translational initiation;1.39278539235234e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.58184294757469e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.62321304652799e-10!GO:0009144;purine nucleoside triphosphate metabolic process;1.62321304652799e-10!GO:0009060;aerobic respiration;2.01371575037209e-10!GO:0008610;lipid biosynthetic process;2.14352549043529e-10!GO:0042254;ribosome biogenesis and assembly;2.27160672813655e-10!GO:0045333;cellular respiration;2.36108646350476e-10!GO:0009142;nucleoside triphosphate biosynthetic process;5.51502200082668e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.51502200082668e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.41745879683952e-10!GO:0000375;RNA splicing, via transesterification reactions;6.41745879683952e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.41745879683952e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.16202742668261e-10!GO:0009260;ribonucleotide biosynthetic process;8.06427519306168e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.32460463063567e-10!GO:0008565;protein transporter activity;9.28458646211497e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.80432485193545e-10!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.80432485193545e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.04855632636973e-09!GO:0030163;protein catabolic process;1.07215197737805e-09!GO:0006164;purine nucleotide biosynthetic process;1.34328536014159e-09!GO:0044257;cellular protein catabolic process;1.69888810606226e-09!GO:0019941;modification-dependent protein catabolic process;1.80331993560309e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.80331993560309e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.01378314263003e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.04311850433447e-09!GO:0051187;cofactor catabolic process;2.11560897463149e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.15709001265294e-09!GO:0017076;purine nucleotide binding;3.16458069593582e-09!GO:0009108;coenzyme biosynthetic process;3.88959670964133e-09!GO:0044255;cellular lipid metabolic process;3.92222638260274e-09!GO:0015986;ATP synthesis coupled proton transport;4.10181018859759e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.10181018859759e-09!GO:0046034;ATP metabolic process;5.01019471088991e-09!GO:0015980;energy derivation by oxidation of organic compounds;6.44857516531389e-09!GO:0005788;endoplasmic reticulum lumen;6.76877753437861e-09!GO:0009109;coenzyme catabolic process;7.2813558445359e-09!GO:0006084;acetyl-CoA metabolic process;1.01971222530096e-08!GO:0006512;ubiquitin cycle;1.46143934268454e-08!GO:0019829;cation-transporting ATPase activity;1.58979517818013e-08!GO:0032553;ribonucleotide binding;1.62214055688003e-08!GO:0032555;purine ribonucleotide binding;1.62214055688003e-08!GO:0031968;organelle outer membrane;1.72954192400184e-08!GO:0006118;electron transport;1.83189851104408e-08!GO:0006629;lipid metabolic process;1.97533515796298e-08!GO:0019867;outer membrane;2.08555185350971e-08!GO:0007005;mitochondrion organization and biogenesis;2.25287109029542e-08!GO:0009117;nucleotide metabolic process;2.27811072965544e-08!GO:0006259;DNA metabolic process;2.29410502778099e-08!GO:0006752;group transfer coenzyme metabolic process;2.48581384924675e-08!GO:0006754;ATP biosynthetic process;2.70919772018116e-08!GO:0006753;nucleoside phosphate metabolic process;2.70919772018116e-08!GO:0006099;tricarboxylic acid cycle;2.83273298454527e-08!GO:0046356;acetyl-CoA catabolic process;2.83273298454527e-08!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;4.6105420802335e-08!GO:0010467;gene expression;5.30025823343553e-08!GO:0048475;coated membrane;5.65346742291934e-08!GO:0030117;membrane coat;5.65346742291934e-08!GO:0006461;protein complex assembly;6.33803442787694e-08!GO:0032787;monocarboxylic acid metabolic process;7.66999356483667e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.71125198605249e-08!GO:0048523;negative regulation of cellular process;9.71125198605249e-08!GO:0005741;mitochondrial outer membrane;9.71125198605249e-08!GO:0016853;isomerase activity;1.06648279288563e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.82157634437653e-07!GO:0043283;biopolymer metabolic process;1.93725823881161e-07!GO:0008654;phospholipid biosynthetic process;2.00172169112565e-07!GO:0042981;regulation of apoptosis;3.21273294300051e-07!GO:0043067;regulation of programmed cell death;3.21572513155873e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.25930352901215e-07!GO:0008361;regulation of cell size;3.4517846701024e-07!GO:0042623;ATPase activity, coupled;4.5833991925097e-07!GO:0051246;regulation of protein metabolic process;4.70610528367416e-07!GO:0005768;endosome;5.04178825743427e-07!GO:0016049;cell growth;5.36031896947531e-07!GO:0045259;proton-transporting ATP synthase complex;5.41440581143079e-07!GO:0044431;Golgi apparatus part;6.25356206566233e-07!GO:0005635;nuclear envelope;7.00878640429815e-07!GO:0048519;negative regulation of biological process;7.20774325983068e-07!GO:0003712;transcription cofactor activity;7.21810905212142e-07!GO:0043069;negative regulation of programmed cell death;8.2305941836363e-07!GO:0005975;carbohydrate metabolic process;9.93147550559984e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.04219017867152e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.06576093177833e-06!GO:0016887;ATPase activity;1.10166388975142e-06!GO:0006364;rRNA processing;1.1108212963953e-06!GO:0017038;protein import;1.17275439647688e-06!GO:0030120;vesicle coat;1.37758201050231e-06!GO:0030662;coated vesicle membrane;1.37758201050231e-06!GO:0016072;rRNA metabolic process;1.40768615708225e-06!GO:0006066;alcohol metabolic process;1.42727067581773e-06!GO:0006913;nucleocytoplasmic transport;1.77613271111791e-06!GO:0043066;negative regulation of apoptosis;1.83409582625745e-06!GO:0005773;vacuole;2.20212798204477e-06!GO:0030554;adenyl nucleotide binding;2.28164646198404e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.39605871675059e-06!GO:0051169;nuclear transport;2.65811863629972e-06!GO:0006399;tRNA metabolic process;2.88695463405507e-06!GO:0016126;sterol biosynthetic process;3.40132596083965e-06!GO:0004298;threonine endopeptidase activity;3.83413880677427e-06!GO:0045454;cell redox homeostasis;3.98831431832003e-06!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;4.09051735984851e-06!GO:0003924;GTPase activity;4.32639982150615e-06!GO:0005762;mitochondrial large ribosomal subunit;4.39982940492811e-06!GO:0000315;organellar large ribosomal subunit;4.39982940492811e-06!GO:0065004;protein-DNA complex assembly;4.51704849306991e-06!GO:0051789;response to protein stimulus;4.76722158147616e-06!GO:0006986;response to unfolded protein;4.76722158147616e-06!GO:0007049;cell cycle;5.0923223740707e-06!GO:0043412;biopolymer modification;6.62547129437865e-06!GO:0031965;nuclear membrane;6.77691373333981e-06!GO:0001558;regulation of cell growth;7.97704796115738e-06!GO:0032559;adenyl ribonucleotide binding;8.35307978366502e-06!GO:0005524;ATP binding;8.49116675613465e-06!GO:0005770;late endosome;9.22024402265852e-06!GO:0016604;nuclear body;9.29020914506048e-06!GO:0006916;anti-apoptosis;9.7240642623357e-06!GO:0008639;small protein conjugating enzyme activity;1.08742521306172e-05!GO:0019787;small conjugating protein ligase activity;1.26508262331914e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.29003648672403e-05!GO:0016740;transferase activity;1.40362845295125e-05!GO:0031988;membrane-bound vesicle;1.50086777378668e-05!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;1.51745308152806e-05!GO:0005798;Golgi-associated vesicle;1.63801144204063e-05!GO:0006631;fatty acid metabolic process;1.7415747574147e-05!GO:0004842;ubiquitin-protein ligase activity;1.74460159077113e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.85162764707752e-05!GO:0015399;primary active transmembrane transporter activity;1.85162764707752e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.92496643365884e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.92496643365884e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.92496643365884e-05!GO:0006334;nucleosome assembly;1.97833340278543e-05!GO:0046474;glycerophospholipid biosynthetic process;2.1576894444316e-05!GO:0000323;lytic vacuole;2.45144213458146e-05!GO:0005764;lysosome;2.45144213458146e-05!GO:0003714;transcription corepressor activity;2.45144213458146e-05!GO:0009165;nucleotide biosynthetic process;2.45608444636292e-05!GO:0006695;cholesterol biosynthetic process;2.51303897841179e-05!GO:0005525;GTP binding;2.51567907885987e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;2.52764785934575e-05!GO:0016787;hydrolase activity;2.55610522897447e-05!GO:0043038;amino acid activation;2.74259711517013e-05!GO:0006418;tRNA aminoacylation for protein translation;2.74259711517013e-05!GO:0043039;tRNA aminoacylation;2.74259711517013e-05!GO:0006464;protein modification process;2.82542116403103e-05!GO:0048037;cofactor binding;3.06670506151571e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24475432838701e-05!GO:0000074;regulation of progression through cell cycle;4.49190835185202e-05!GO:0019318;hexose metabolic process;4.63184390239354e-05!GO:0005777;peroxisome;4.63184390239354e-05!GO:0042579;microbody;4.63184390239354e-05!GO:0031982;vesicle;4.8092546497544e-05!GO:0051726;regulation of cell cycle;4.86206913706562e-05!GO:0006333;chromatin assembly or disassembly;5.16611402983713e-05!GO:0016607;nuclear speck;5.32783024213901e-05!GO:0031410;cytoplasmic vesicle;5.56108622077704e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.5703781785637e-05!GO:0030133;transport vesicle;5.71488345200435e-05!GO:0006807;nitrogen compound metabolic process;5.72066388072853e-05!GO:0000139;Golgi membrane;6.64198097261456e-05!GO:0030867;rough endoplasmic reticulum membrane;6.93861337328312e-05!GO:0065002;intracellular protein transport across a membrane;7.28391980452593e-05!GO:0016859;cis-trans isomerase activity;7.30996645632577e-05!GO:0005791;rough endoplasmic reticulum;7.47762313817501e-05!GO:0016125;sterol metabolic process;7.89811753249377e-05!GO:0005048;signal sequence binding;8.1102603210625e-05!GO:0044453;nuclear membrane part;8.1102603210625e-05!GO:0006366;transcription from RNA polymerase II promoter;8.385488658178e-05!GO:0000314;organellar small ribosomal subunit;8.79634934962139e-05!GO:0005763;mitochondrial small ribosomal subunit;8.79634934962139e-05!GO:0005996;monosaccharide metabolic process;9.34002359651567e-05!GO:0016881;acid-amino acid ligase activity;9.60279621476493e-05!GO:0000245;spliceosome assembly;9.61520263406179e-05!GO:0022402;cell cycle process;0.000102192402444245!GO:0006790;sulfur metabolic process;0.000102229099217895!GO:0044440;endosomal part;0.000112122070653865!GO:0010008;endosome membrane;0.000112122070653865!GO:0031252;leading edge;0.000113635069416973!GO:0006613;cotranslational protein targeting to membrane;0.000119840109653593!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000120060493875326!GO:0006626;protein targeting to mitochondrion;0.00012098944547645!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000123701180986126!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000138499874359991!GO:0016564;transcription repressor activity;0.000141818283949743!GO:0031497;chromatin assembly;0.000141818283949743!GO:0046483;heterocycle metabolic process;0.000150589219898027!GO:0006979;response to oxidative stress;0.000160947459789336!GO:0022890;inorganic cation transmembrane transporter activity;0.000165430177309038!GO:0050662;coenzyme binding;0.000166707257499187!GO:0006839;mitochondrial transport;0.00019599854722874!GO:0030176;integral to endoplasmic reticulum membrane;0.00019599854722874!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000209622576546195!GO:0040008;regulation of growth;0.000217658383678097!GO:0043492;ATPase activity, coupled to movement of substances;0.00022095137588248!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000226233069262543!GO:0015002;heme-copper terminal oxidase activity;0.000226233069262543!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000226233069262543!GO:0004129;cytochrome-c oxidase activity;0.000226233069262543!GO:0046467;membrane lipid biosynthetic process;0.000231907269426604!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000235758436110058!GO:0048468;cell development;0.000246440438320918!GO:0033116;ER-Golgi intermediate compartment membrane;0.000246833307118407!GO:0032561;guanyl ribonucleotide binding;0.000247815773207605!GO:0019001;guanyl nucleotide binding;0.000247815773207605!GO:0045786;negative regulation of progression through cell cycle;0.000283412392127461!GO:0015992;proton transport;0.000296253740732833!GO:0009308;amine metabolic process;0.00031192887562881!GO:0006818;hydrogen transport;0.0003180457688345!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000338392134605998!GO:0019843;rRNA binding;0.00034062763749684!GO:0044438;microbody part;0.000377236952257234!GO:0044439;peroxisomal part;0.000377236952257234!GO:0009719;response to endogenous stimulus;0.00040939387055706!GO:0043681;protein import into mitochondrion;0.000410188306214354!GO:0031903;microbody membrane;0.000431832832788835!GO:0005778;peroxisomal membrane;0.000431832832788835!GO:0016044;membrane organization and biogenesis;0.000466156022301217!GO:0005667;transcription factor complex;0.000503508041159582!GO:0005905;coated pit;0.000535515131321759!GO:0031324;negative regulation of cellular metabolic process;0.000545895971817432!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000585291264021872!GO:0007050;cell cycle arrest;0.000643661080106086!GO:0006006;glucose metabolic process;0.000650361394869136!GO:0006974;response to DNA damage stimulus;0.000718845649991112!GO:0008203;cholesterol metabolic process;0.00072523944471534!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000760617797025878!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000769463549888389!GO:0000151;ubiquitin ligase complex;0.000780685506572568!GO:0032446;protein modification by small protein conjugation;0.00078670959392672!GO:0043021;ribonucleoprotein binding;0.000806576655710761!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000823161241802808!GO:0005885;Arp2/3 protein complex;0.000837934486745046!GO:0043284;biopolymer biosynthetic process;0.000915876701490757!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000955439751627629!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000955439751627629!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000955439751627629!GO:0043623;cellular protein complex assembly;0.000958902961938405!GO:0016567;protein ubiquitination;0.00103924632800055!GO:0051920;peroxiredoxin activity;0.00105090762830082!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00109206044585381!GO:0046489;phosphoinositide biosynthetic process;0.00109313125914922!GO:0006323;DNA packaging;0.00113581933482984!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00113954665735848!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00113954665735848!GO:0051427;hormone receptor binding;0.00113954665735848!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00117152094681874!GO:0006606;protein import into nucleus;0.00117763016523021!GO:0004576;oligosaccharyl transferase activity;0.00118856652423773!GO:0008026;ATP-dependent helicase activity;0.00123357528138711!GO:0030137;COPI-coated vesicle;0.00130237904290936!GO:0051170;nuclear import;0.00134555604011039!GO:0008250;oligosaccharyl transferase complex;0.00134727954079799!GO:0046394;carboxylic acid biosynthetic process;0.00137868436593869!GO:0016053;organic acid biosynthetic process;0.00137868436593869!GO:0003697;single-stranded DNA binding;0.00138993048770103!GO:0030036;actin cytoskeleton organization and biogenesis;0.00147978163201625!GO:0051287;NAD binding;0.00159506956748846!GO:0006778;porphyrin metabolic process;0.00159506956748846!GO:0033013;tetrapyrrole metabolic process;0.00159506956748846!GO:0016051;carbohydrate biosynthetic process;0.00162238471869947!GO:0007006;mitochondrial membrane organization and biogenesis;0.00166787302803662!GO:0043687;post-translational protein modification;0.00178132276044758!GO:0030663;COPI coated vesicle membrane;0.00185168460531144!GO:0030126;COPI vesicle coat;0.00185168460531144!GO:0006635;fatty acid beta-oxidation;0.00193167529335583!GO:0006520;amino acid metabolic process;0.00193814744461842!GO:0009892;negative regulation of metabolic process;0.001989076984888!GO:0035257;nuclear hormone receptor binding;0.00209482995490962!GO:0030118;clathrin coat;0.00211524897466381!GO:0048471;perinuclear region of cytoplasm;0.00218553468419468!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00231864600586067!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00241862269055599!GO:0008652;amino acid biosynthetic process;0.00250933489624959!GO:0000785;chromatin;0.00250933489624959!GO:0030132;clathrin coat of coated pit;0.00266686013794504!GO:0005643;nuclear pore;0.00278985230939545!GO:0000786;nucleosome;0.00282261146959716!GO:0006612;protein targeting to membrane;0.00288968465925315!GO:0042802;identical protein binding;0.00288968465925315!GO:0048522;positive regulation of cellular process;0.00293560107319386!GO:0000278;mitotic cell cycle;0.00306364662769707!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00307947510625198!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0032349544793057!GO:0016779;nucleotidyltransferase activity;0.00324647625093166!GO:0006749;glutathione metabolic process;0.00343365402193331!GO:0006950;response to stress;0.00349133543013945!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00352100688573625!GO:0018196;peptidyl-asparagine modification;0.00363579271031757!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00363579271031757!GO:0030145;manganese ion binding;0.00379709213868674!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0041755080935664!GO:0006007;glucose catabolic process;0.00433501808125948!GO:0006633;fatty acid biosynthetic process;0.0043855375260361!GO:0031902;late endosome membrane;0.00454421703454869!GO:0016860;intramolecular oxidoreductase activity;0.00454958007223082!GO:0006740;NADPH regeneration;0.00460173337779014!GO:0006098;pentose-phosphate shunt;0.00460173337779014!GO:0043566;structure-specific DNA binding;0.00465436658687386!GO:0003724;RNA helicase activity;0.00469287181314037!GO:0005769;early endosome;0.00489115718422855!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00503691633390972!GO:0005774;vacuolar membrane;0.00512272731190666!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00515320016475861!GO:0000049;tRNA binding;0.00520062683714178!GO:0007040;lysosome organization and biogenesis;0.00524669936556746!GO:0046930;pore complex;0.00531483554395733!GO:0042168;heme metabolic process;0.00557859812596583!GO:0042158;lipoprotein biosynthetic process;0.0056170899041344!GO:0006414;translational elongation;0.00568454625892336!GO:0016829;lyase activity;0.00576375912662588!GO:0016310;phosphorylation;0.00611469723394424!GO:0000030;mannosyltransferase activity;0.00613283923152905!GO:0006506;GPI anchor biosynthetic process;0.00647165024147956!GO:0006720;isoprenoid metabolic process;0.0066300719629308!GO:0003746;translation elongation factor activity;0.00665381620189801!GO:0006767;water-soluble vitamin metabolic process;0.00667289384334924!GO:0048487;beta-tubulin binding;0.00675509509381586!GO:0030029;actin filament-based process;0.00678222622884422!GO:0006779;porphyrin biosynthetic process;0.00702197549301035!GO:0033014;tetrapyrrole biosynthetic process;0.00702197549301035!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.00704911670146941!GO:0006260;DNA replication;0.00717533978566469!GO:0000096;sulfur amino acid metabolic process;0.00724611654387283!GO:0006891;intra-Golgi vesicle-mediated transport;0.00754776636019506!GO:0043488;regulation of mRNA stability;0.0077017563247868!GO:0043487;regulation of RNA stability;0.0077017563247868!GO:0051329;interphase of mitotic cell cycle;0.00772675529556137!GO:0030119;AP-type membrane coat adaptor complex;0.00780160543975235!GO:0031072;heat shock protein binding;0.00786146447873518!GO:0045792;negative regulation of cell size;0.00803017287341245!GO:0043433;negative regulation of transcription factor activity;0.008121426389758!GO:0016408;C-acyltransferase activity;0.00842173565120967!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00849616809476548!GO:0030503;regulation of cell redox homeostasis;0.00858603353264946!GO:0030308;negative regulation of cell growth;0.00868585239349511!GO:0065009;regulation of a molecular function;0.00872252672976798!GO:0004386;helicase activity;0.00880203070704985!GO:0016197;endosome transport;0.00902604855900255!GO:0006497;protein amino acid lipidation;0.0090597684141478!GO:0006650;glycerophospholipid metabolic process;0.0090597684141478!GO:0006793;phosphorus metabolic process;0.00920874680526711!GO:0006796;phosphate metabolic process;0.00920874680526711!GO:0006505;GPI anchor metabolic process;0.00935183918982606!GO:0008092;cytoskeletal protein binding;0.00947267884116419!GO:0006739;NADP metabolic process;0.00960096949572864!GO:0044437;vacuolar part;0.00968076400714421!GO:0003729;mRNA binding;0.00970696220187952!GO:0019395;fatty acid oxidation;0.00974680542467573!GO:0051325;interphase;0.0098514930860414!GO:0003713;transcription coactivator activity;0.00988502024571337!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00997566134251157!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0101385398160361!GO:0051716;cellular response to stimulus;0.0104519297003922!GO:0051098;regulation of binding;0.0107706392196549!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0109069813224984!GO:0031406;carboxylic acid binding;0.0111856767712236!GO:0006417;regulation of translation;0.0113190795265235!GO:0051540;metal cluster binding;0.0115378042185369!GO:0051536;iron-sulfur cluster binding;0.0115378042185369!GO:0007033;vacuole organization and biogenesis;0.0117958405541244!GO:0007243;protein kinase cascade;0.0118475786473256!GO:0051539;4 iron, 4 sulfur cluster binding;0.0118824074412797!GO:0009889;regulation of biosynthetic process;0.0120981121166199!GO:0046164;alcohol catabolic process;0.0121043673733485!GO:0006403;RNA localization;0.012154721247892!GO:0045936;negative regulation of phosphate metabolic process;0.0124715764893324!GO:0050657;nucleic acid transport;0.0124726571789052!GO:0051236;establishment of RNA localization;0.0124726571789052!GO:0050658;RNA transport;0.0124726571789052!GO:0015036;disulfide oxidoreductase activity;0.0126810296517726!GO:0006595;polyamine metabolic process;0.0134552655605988!GO:0005813;centrosome;0.0135194163858383!GO:0008180;signalosome;0.0135933496874596!GO:0043065;positive regulation of apoptosis;0.0136688630337975!GO:0033559;unsaturated fatty acid metabolic process;0.0137279692716684!GO:0006636;unsaturated fatty acid biosynthetic process;0.0137279692716684!GO:0030131;clathrin adaptor complex;0.0137321907417909!GO:0030880;RNA polymerase complex;0.0141226047599703!GO:0005684;U2-dependent spliceosome;0.0145493090601343!GO:0030658;transport vesicle membrane;0.0147366579170384!GO:0030134;ER to Golgi transport vesicle;0.0155351467077053!GO:0043086;negative regulation of catalytic activity;0.0157837038383744!GO:0045926;negative regulation of growth;0.0159931166494443!GO:0005765;lysosomal membrane;0.016009510369839!GO:0005869;dynactin complex;0.0161337216428065!GO:0006281;DNA repair;0.016160012899264!GO:0008632;apoptotic program;0.0164913899514626!GO:0048518;positive regulation of biological process;0.0166730191881258!GO:0006519;amino acid and derivative metabolic process;0.0167131850758774!GO:0003899;DNA-directed RNA polymerase activity;0.016916474551395!GO:0001527;microfibril;0.0172782938631522!GO:0048500;signal recognition particle;0.0174284844665166!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0175750902104471!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0175750902104471!GO:0006643;membrane lipid metabolic process;0.0176881708554343!GO:0007034;vacuolar transport;0.0177301071575039!GO:0031326;regulation of cellular biosynthetic process;0.0177534374719142!GO:0043068;positive regulation of programmed cell death;0.0177585987585426!GO:0017166;vinculin binding;0.0184466156659676!GO:0031301;integral to organelle membrane;0.0185647083120453!GO:0006733;oxidoreduction coenzyme metabolic process;0.0186980523736471!GO:0031418;L-ascorbic acid binding;0.0191982398330804!GO:0035258;steroid hormone receptor binding;0.019329564089952!GO:0046365;monosaccharide catabolic process;0.0193989728460386!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0194936064866256!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0201514683130357!GO:0046364;monosaccharide biosynthetic process;0.0201514683130357!GO:0046165;alcohol biosynthetic process;0.0201514683130357!GO:0005581;collagen;0.0201514683130357!GO:0006897;endocytosis;0.0201514683130357!GO:0010324;membrane invagination;0.0201514683130357!GO:0008320;protein transmembrane transporter activity;0.0201657010496201!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0205758157312375!GO:0051101;regulation of DNA binding;0.0206750176952769!GO:0008312;7S RNA binding;0.0211099314805321!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0211099314805321!GO:0033673;negative regulation of kinase activity;0.0213083449937505!GO:0006469;negative regulation of protein kinase activity;0.0213083449937505!GO:0001666;response to hypoxia;0.0216166449036764!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0216166449036764!GO:0016746;transferase activity, transferring acyl groups;0.0216337133514128!GO:0004448;isocitrate dehydrogenase activity;0.0218764358753493!GO:0001726;ruffle;0.0220743408959637!GO:0005758;mitochondrial intermembrane space;0.0222143765172904!GO:0009081;branched chain family amino acid metabolic process;0.0225850711751924!GO:0006783;heme biosynthetic process;0.0227303848487013!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0228275586132305!GO:0051252;regulation of RNA metabolic process;0.0228969293078558!GO:0000082;G1/S transition of mitotic cell cycle;0.0231049693354346!GO:0008430;selenium binding;0.0231838830897517!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0234486838866233!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0234486838866233!GO:0030127;COPII vesicle coat;0.023957187399958!GO:0012507;ER to Golgi transport vesicle membrane;0.023957187399958!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0244022873952433!GO:0042326;negative regulation of phosphorylation;0.0244022873952433!GO:0005583;fibrillar collagen;0.0251304143024943!GO:0008415;acyltransferase activity;0.0254336421009487!GO:0046519;sphingoid metabolic process;0.0256658727344502!GO:0008299;isoprenoid biosynthetic process;0.0266112448455464!GO:0031589;cell-substrate adhesion;0.026969238450336!GO:0019899;enzyme binding;0.0270080550615039!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0271034723936933!GO:0010257;NADH dehydrogenase complex assembly;0.0271034723936933!GO:0033108;mitochondrial respiratory chain complex assembly;0.0271034723936933!GO:0008147;structural constituent of bone;0.0271552330037653!GO:0019320;hexose catabolic process;0.02718210525818!GO:0004177;aminopeptidase activity;0.02718210525818!GO:0007160;cell-matrix adhesion;0.0273560945343529!GO:0005862;muscle thin filament tropomyosin;0.0273560945343529!GO:0051087;chaperone binding;0.0273560945343529!GO:0016563;transcription activator activity;0.0274563183961537!GO:0016272;prefoldin complex;0.0274607989554459!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0274607989554459!GO:0000428;DNA-directed RNA polymerase complex;0.0274607989554459!GO:0016615;malate dehydrogenase activity;0.0275368700612669!GO:0030660;Golgi-associated vesicle membrane;0.0277594897168734!GO:0042157;lipoprotein metabolic process;0.0278031617301682!GO:0008033;tRNA processing;0.0282643530917616!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0286858981707114!GO:0004784;superoxide dismutase activity;0.0286858981707114!GO:0008286;insulin receptor signaling pathway;0.0288824291695581!GO:0050811;GABA receptor binding;0.0290664389114428!GO:0051276;chromosome organization and biogenesis;0.0294568808629671!GO:0005815;microtubule organizing center;0.0294808390572286!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0295468928139863!GO:0045047;protein targeting to ER;0.0295468928139863!GO:0044452;nucleolar part;0.0296372366216007!GO:0006402;mRNA catabolic process;0.0297186264808081!GO:0005832;chaperonin-containing T-complex;0.0299302772128912!GO:0045947;negative regulation of translational initiation;0.0308614873071416!GO:0008186;RNA-dependent ATPase activity;0.0310564198119666!GO:0006644;phospholipid metabolic process;0.0310564198119666!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0316188997276657!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0316188997276657!GO:0030384;phosphoinositide metabolic process;0.0317647939542279!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0319974300485405!GO:0001725;stress fiber;0.0322210895329023!GO:0032432;actin filament bundle;0.0322210895329023!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0324490906344002!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0325547621583215!GO:0006509;membrane protein ectodomain proteolysis;0.0325728479553204!GO:0033619;membrane protein proteolysis;0.0325728479553204!GO:0006022;aminoglycan metabolic process;0.0331030733430923!GO:0007041;lysosomal transport;0.0331030733430923!GO:0043022;ribosome binding;0.0342662712103788!GO:0030508;thiol-disulfide exchange intermediate activity;0.0343717166865286!GO:0031970;organelle envelope lumen;0.0344025906681458!GO:0000305;response to oxygen radical;0.0346287009609905!GO:0003756;protein disulfide isomerase activity;0.0350880704116915!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0350880704116915!GO:0006096;glycolysis;0.0352878376480258!GO:0030433;ER-associated protein catabolic process;0.0354366354184308!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0354366354184308!GO:0005924;cell-substrate adherens junction;0.0362322212090293!GO:0016417;S-acyltransferase activity;0.0363699929888384!GO:0051348;negative regulation of transferase activity;0.0367992050673987!GO:0000303;response to superoxide;0.0370983540986898!GO:0031371;ubiquitin conjugating enzyme complex;0.0377571757767985!GO:0030659;cytoplasmic vesicle membrane;0.0377571757767985!GO:0000097;sulfur amino acid biosynthetic process;0.0380902358496977!GO:0046870;cadmium ion binding;0.0382122403147276!GO:0016481;negative regulation of transcription;0.038503134433714!GO:0006220;pyrimidine nucleotide metabolic process;0.0391349880299329!GO:0008139;nuclear localization sequence binding;0.0392054119736112!GO:0031529;ruffle organization and biogenesis;0.0392054119736112!GO:0044275;cellular carbohydrate catabolic process;0.039366337945627!GO:0006892;post-Golgi vesicle-mediated transport;0.0395366338521662!GO:0030521;androgen receptor signaling pathway;0.0397173471280147!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0399064604073315!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0402842159990691!GO:0005507;copper ion binding;0.0404775353207495!GO:0000339;RNA cap binding;0.0404983391052101!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0406000020192682!GO:0006354;RNA elongation;0.0409113864184746!GO:0019319;hexose biosynthetic process;0.0410760460363456!GO:0006693;prostaglandin metabolic process;0.0410760460363456!GO:0006692;prostanoid metabolic process;0.0410760460363456!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0417965348997395!GO:0006917;induction of apoptosis;0.0419303750145619!GO:0016830;carbon-carbon lyase activity;0.0419964861824999!GO:0000902;cell morphogenesis;0.0422085347397165!GO:0032989;cellular structure morphogenesis;0.0422085347397165!GO:0006769;nicotinamide metabolic process;0.042361828258423!GO:0015248;sterol transporter activity;0.042361828258423!GO:0051775;response to redox state;0.0424463633986393!GO:0006980;redox signal response;0.0424463633986393!GO:0044420;extracellular matrix part;0.0429504625032917!GO:0005586;collagen type III;0.0432325300464773!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.043243119379856!GO:0006108;malate metabolic process;0.0439328351900379!GO:0030125;clathrin vesicle coat;0.0439328351900379!GO:0030665;clathrin coated vesicle membrane;0.0439328351900379!GO:0030055;cell-matrix junction;0.0442505948045452!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0450920678399138!GO:0045039;protein import into mitochondrial inner membrane;0.0450920678399138!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0455829131939515!GO:0050178;phenylpyruvate tautomerase activity;0.0462011080283921!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0465930922700529!GO:0031272;regulation of pseudopodium formation;0.0468181880582693!GO:0031269;pseudopodium formation;0.0468181880582693!GO:0031344;regulation of cell projection organization and biogenesis;0.0468181880582693!GO:0031268;pseudopodium organization and biogenesis;0.0468181880582693!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0468181880582693!GO:0031274;positive regulation of pseudopodium formation;0.0468181880582693!GO:0030518;steroid hormone receptor signaling pathway;0.0473952449702563!GO:0016453;C-acetyltransferase activity;0.0483564144009478!GO:0004364;glutathione transferase activity;0.0483564144009478!GO:0030140;trans-Golgi network transport vesicle;0.048428147908803!GO:0050749;apolipoprotein E receptor binding;0.0490239800320329!GO:0005925;focal adhesion;0.0490239800320329!GO:0030911;TPR domain binding;0.0491306779084541!GO:0051168;nuclear export;0.0496443513235674!GO:0005779;integral to peroxisomal membrane;0.0496443513235674!GO:0031231;intrinsic to peroxisomal membrane;0.0496443513235674!GO:0005784;translocon complex;0.0497108662963691!GO:0012502;induction of programmed cell death;0.0498322549047654 | |||
|sample_id=11259 | |sample_id=11259 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=adipose tissue | |sample_tissue=adipose tissue | ||
|top_motifs=TFAP4:2.36034055523;GLI1..3:2.12738313313;XBP1:2.02781732149;LHX3,4:1.98909102925;SRF:1.94296152425;IKZF1:1.7671815868;NR6A1:1.62421868262;ESRRA:1.57615473629;HES1:1.57298035224;TAL1_TCF{3,4,12}:1.40376413399;AR:1.39256838491;MAFB:1.37046053997;ZNF238:1.30733063883;SMAD1..7,9:1.29382614583;TFCP2:1.25231011866;ATF6:1.23346998095;TBP:1.22129327134;ESR1:1.1501856649;NR5A1,2:1.0703045304;PPARG:1.04880785106;UFEwm:1.03198607488;DBP:1.0111653191;GZF1:0.985645557005;HOX{A5,B5}:0.907839496229;HNF4A_NR2F1,2:0.871720469467;NR3C1:0.868885666338;NANOG{mouse}:0.785096902089;NKX3-1:0.777482904251;EBF1:0.775703733462;HOX{A6,A7,B6,B7}:0.767593728519;ZNF148:0.76503457663;STAT5{A,B}:0.762221744401;NR1H4:0.733665316706;STAT2,4,6:0.646844998895;ZNF423:0.641656366965;GCM1,2:0.585283913561;ALX4:0.575729694201;TLX1..3_NFIC{dimer}:0.54771672909;TP53:0.534811639354;PAX1,9:0.532010155536;HAND1,2:0.502455997411;GTF2A1,2:0.489385590213;PAX5:0.487935492461;NKX3-2:0.478039822458;TEAD1:0.425563113924;MYBL2:0.409279004798;RXRA_VDR{dimer}:0.399980936753;HLF:0.357146434924;ZIC1..3:0.35194934581;NKX2-2,8:0.310062481903;RORA:0.309383242455;HIF1A:0.285362429437;NHLH1,2:0.249560969907;bHLH_family:0.24277046815;SPZ1:0.233343232061;NKX2-3_NKX2-5:0.230565870444;NFE2L1:0.211681744026;PAX3,7:0.151452507675;GFI1:0.122706082044;MTF1:0.122574955034;FOXA2:0.120995746194;CRX:0.120496697129;GTF2I:0.0986008501177;GFI1B:0.0984555720573;HNF1A:0.0859695806983;T:0.0808302932955;FOXL1:0.0688836942369;TFAP2{A,C}:0.0679929160807;REST:0.0610494902222;EVI1:0.0465646848778;LEF1_TCF7_TCF7L1,2:0.0285507191274;KLF4:0.0141340041767;MYFfamily:-0.0108242117795;ARID5B:-0.0114886904783;SOX5:-0.015923573497;PAX6:-0.0167180651646;ZBTB6:-0.0205568558161;MEF2{A,B,C,D}:-0.0280013456978;NFE2L2:-0.0415414802794;NFE2:-0.0664448705083;RXR{A,B,G}:-0.0784668815285;TOPORS:-0.0980041741279;PATZ1:-0.144167597331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.151124818938;HIC1:-0.163970365052;ADNP_IRX_SIX_ZHX:-0.187922172493;YY1:-0.190421496813;PRRX1,2:-0.209036432128;BACH2:-0.210310174003;MAZ:-0.211564289037;TGIF1:-0.22656645995;NFKB1_REL_RELA:-0.234143295759;POU2F1..3:-0.238959390181;HOX{A4,D4}:-0.259577182727;PBX1:-0.262318717006;ONECUT1,2:-0.26501162009;FOS_FOS{B,L1}_JUN{B,D}:-0.267818056282;CEBPA,B_DDIT3:-0.274041445984;NFATC1..3:-0.275631498356;GATA6:-0.282128695798;FOSL2:-0.334547714967;PAX2:-0.338255192838;EN1,2:-0.344400245261;POU6F1:-0.344827548062;GATA4:-0.35991055101;LMO2:-0.383149596248;MYB:-0.407657821524;ATF2:-0.428418317815;RUNX1..3:-0.45311852915;MYOD1:-0.463335394702;SOX17:-0.463398063933;PAX8:-0.469167216358;NFIL3:-0.487908693996;OCT4_SOX2{dimer}:-0.49412164441;NKX2-1,4:-0.536414978839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.541345720733;RREB1:-0.548609549941;POU3F1..4:-0.56060092541;SNAI1..3:-0.565536394256;JUN:-0.566179917692;MTE{core}:-0.57497038382;ZEB1:-0.580047626416;NFY{A,B,C}:-0.58517843215;ALX1:-0.594668722804;PRDM1:-0.608789395044;HMGA1,2:-0.619082989444;TEF:-0.654028189318;ETS1,2:-0.659421229466;ZNF384:-0.665444392052;TFAP2B:-0.671666355198;SPIB:-0.676176019878;VSX1,2:-0.683679007196;FOX{D1,D2}:-0.716399387879;NFIX:-0.72997398831;FOXP3:-0.744691914036;POU5F1:-0.753081795683;SPI1:-0.759783986124;ATF5_CREB3:-0.764331507505;TBX4,5:-0.769864584899;SOX{8,9,10}:-0.770804477926;NANOG:-0.782909707306;RFX1:-0.801625417764;PAX4:-0.802686065528;HSF1,2:-0.814446937524;SREBF1,2:-0.818477823309;MED-1{core}:-0.83317115181;PDX1:-0.836503275901;HMX1:-0.839776435121;HOXA9_MEIS1:-0.857980868854;IRF1,2:-0.867670920679;PITX1..3:-0.874423565236;IRF7:-0.892377323264;ZNF143:-0.937948095605;CUX2:-0.948535901781;DMAP1_NCOR{1,2}_SMARC:-0.95394821172;FOXD3:-0.966170101558;MZF1:-0.977126207708;BREu{core}:-0.999252479715;NRF1:-1.00422274007;TLX2:-1.00725647446;POU1F1:-1.02341958899;IKZF2:-1.02647588258;SOX2:-1.04992561748;STAT1,3:-1.05409545196;AHR_ARNT_ARNT2:-1.08955568814;FOXO1,3,4:-1.10704380836;ZBTB16:-1.12992998119;CDC5L:-1.15009787239;FOXM1:-1.15417164832;SP1:-1.17448739174;EGR1..3:-1.18968508856;ELF1,2,4:-1.2151039658;E2F1..5:-1.33818833858;FOX{F1,F2,J1}:-1.37313558247;RFX2..5_RFXANK_RFXAP:-1.37770832928;BPTF:-1.39526437538;ZFP161:-1.40629001269;CREB1:-1.41695106579;ATF4:-1.44839797974;XCPE1{core}:-1.56391264143;TFDP1:-1.60591973744;EP300:-1.74104134203;CDX1,2,4:-1.75293354902;ELK1,4_GABP{A,B1}:-1.77308720762;FOXP1:-1.80623170918;HBP1_HMGB_SSRP1_UBTF:-1.88085904455;FOXN1:-2.03804072397;FOXQ1:-2.11412731609;FOX{I1,J2}:-2.16799268121;AIRE:-2.20090256705;RBPJ:-2.48822936235;NKX6-1,2:-2.66218675951 | |top_motifs=TFAP4:2.36034055523;GLI1..3:2.12738313313;XBP1:2.02781732149;LHX3,4:1.98909102925;SRF:1.94296152425;IKZF1:1.7671815868;NR6A1:1.62421868262;ESRRA:1.57615473629;HES1:1.57298035224;TAL1_TCF{3,4,12}:1.40376413399;AR:1.39256838491;MAFB:1.37046053997;ZNF238:1.30733063883;SMAD1..7,9:1.29382614583;TFCP2:1.25231011866;ATF6:1.23346998095;TBP:1.22129327134;ESR1:1.1501856649;NR5A1,2:1.0703045304;PPARG:1.04880785106;UFEwm:1.03198607488;DBP:1.0111653191;GZF1:0.985645557005;HOX{A5,B5}:0.907839496229;HNF4A_NR2F1,2:0.871720469467;NR3C1:0.868885666338;NANOG{mouse}:0.785096902089;NKX3-1:0.777482904251;EBF1:0.775703733462;HOX{A6,A7,B6,B7}:0.767593728519;ZNF148:0.76503457663;STAT5{A,B}:0.762221744401;NR1H4:0.733665316706;STAT2,4,6:0.646844998895;ZNF423:0.641656366965;GCM1,2:0.585283913561;ALX4:0.575729694201;TLX1..3_NFIC{dimer}:0.54771672909;TP53:0.534811639354;PAX1,9:0.532010155536;HAND1,2:0.502455997411;GTF2A1,2:0.489385590213;PAX5:0.487935492461;NKX3-2:0.478039822458;TEAD1:0.425563113924;MYBL2:0.409279004798;RXRA_VDR{dimer}:0.399980936753;HLF:0.357146434924;ZIC1..3:0.35194934581;NKX2-2,8:0.310062481903;RORA:0.309383242455;HIF1A:0.285362429437;NHLH1,2:0.249560969907;bHLH_family:0.24277046815;SPZ1:0.233343232061;NKX2-3_NKX2-5:0.230565870444;NFE2L1:0.211681744026;PAX3,7:0.151452507675;GFI1:0.122706082044;MTF1:0.122574955034;FOXA2:0.120995746194;CRX:0.120496697129;GTF2I:0.0986008501177;GFI1B:0.0984555720573;HNF1A:0.0859695806983;T:0.0808302932955;FOXL1:0.0688836942369;TFAP2{A,C}:0.0679929160807;REST:0.0610494902222;EVI1:0.0465646848778;LEF1_TCF7_TCF7L1,2:0.0285507191274;KLF4:0.0141340041767;MYFfamily:-0.0108242117795;ARID5B:-0.0114886904783;SOX5:-0.015923573497;PAX6:-0.0167180651646;ZBTB6:-0.0205568558161;MEF2{A,B,C,D}:-0.0280013456978;NFE2L2:-0.0415414802794;NFE2:-0.0664448705083;RXR{A,B,G}:-0.0784668815285;TOPORS:-0.0980041741279;PATZ1:-0.144167597331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.151124818938;HIC1:-0.163970365052;ADNP_IRX_SIX_ZHX:-0.187922172493;YY1:-0.190421496813;PRRX1,2:-0.209036432128;BACH2:-0.210310174003;MAZ:-0.211564289037;TGIF1:-0.22656645995;NFKB1_REL_RELA:-0.234143295759;POU2F1..3:-0.238959390181;HOX{A4,D4}:-0.259577182727;PBX1:-0.262318717006;ONECUT1,2:-0.26501162009;FOS_FOS{B,L1}_JUN{B,D}:-0.267818056282;CEBPA,B_DDIT3:-0.274041445984;NFATC1..3:-0.275631498356;GATA6:-0.282128695798;FOSL2:-0.334547714967;PAX2:-0.338255192838;EN1,2:-0.344400245261;POU6F1:-0.344827548062;GATA4:-0.35991055101;LMO2:-0.383149596248;MYB:-0.407657821524;ATF2:-0.428418317815;RUNX1..3:-0.45311852915;MYOD1:-0.463335394702;SOX17:-0.463398063933;PAX8:-0.469167216358;NFIL3:-0.487908693996;OCT4_SOX2{dimer}:-0.49412164441;NKX2-1,4:-0.536414978839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.541345720733;RREB1:-0.548609549941;POU3F1..4:-0.56060092541;SNAI1..3:-0.565536394256;JUN:-0.566179917692;MTE{core}:-0.57497038382;ZEB1:-0.580047626416;NFY{A,B,C}:-0.58517843215;ALX1:-0.594668722804;PRDM1:-0.608789395044;HMGA1,2:-0.619082989444;TEF:-0.654028189318;ETS1,2:-0.659421229466;ZNF384:-0.665444392052;TFAP2B:-0.671666355198;SPIB:-0.676176019878;VSX1,2:-0.683679007196;FOX{D1,D2}:-0.716399387879;NFIX:-0.72997398831;FOXP3:-0.744691914036;POU5F1:-0.753081795683;SPI1:-0.759783986124;ATF5_CREB3:-0.764331507505;TBX4,5:-0.769864584899;SOX{8,9,10}:-0.770804477926;NANOG:-0.782909707306;RFX1:-0.801625417764;PAX4:-0.802686065528;HSF1,2:-0.814446937524;SREBF1,2:-0.818477823309;MED-1{core}:-0.83317115181;PDX1:-0.836503275901;HMX1:-0.839776435121;HOXA9_MEIS1:-0.857980868854;IRF1,2:-0.867670920679;PITX1..3:-0.874423565236;IRF7:-0.892377323264;ZNF143:-0.937948095605;CUX2:-0.948535901781;DMAP1_NCOR{1,2}_SMARC:-0.95394821172;FOXD3:-0.966170101558;MZF1:-0.977126207708;BREu{core}:-0.999252479715;NRF1:-1.00422274007;TLX2:-1.00725647446;POU1F1:-1.02341958899;IKZF2:-1.02647588258;SOX2:-1.04992561748;STAT1,3:-1.05409545196;AHR_ARNT_ARNT2:-1.08955568814;FOXO1,3,4:-1.10704380836;ZBTB16:-1.12992998119;CDC5L:-1.15009787239;FOXM1:-1.15417164832;SP1:-1.17448739174;EGR1..3:-1.18968508856;ELF1,2,4:-1.2151039658;E2F1..5:-1.33818833858;FOX{F1,F2,J1}:-1.37313558247;RFX2..5_RFXANK_RFXAP:-1.37770832928;BPTF:-1.39526437538;ZFP161:-1.40629001269;CREB1:-1.41695106579;ATF4:-1.44839797974;XCPE1{core}:-1.56391264143;TFDP1:-1.60591973744;EP300:-1.74104134203;CDX1,2,4:-1.75293354902;ELK1,4_GABP{A,B1}:-1.77308720762;FOXP1:-1.80623170918;HBP1_HMGB_SSRP1_UBTF:-1.88085904455;FOXN1:-2.03804072397;FOXQ1:-2.11412731609;FOX{I1,J2}:-2.16799268121;AIRE:-2.20090256705;RBPJ:-2.48822936235;NKX6-1,2:-2.66218675951 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11259-116F8;search_select_hide=table117:FF:11259-116F8 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Adipocyte - subcutaneous, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12494 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12494
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12494
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.113 |
| 10 | 10 | 0.341 |
| 100 | 100 | 0.735 |
| 101 | 101 | 0.859 |
| 102 | 102 | 0.599 |
| 103 | 103 | 0.156 |
| 104 | 104 | 0.256 |
| 105 | 105 | 0.438 |
| 106 | 106 | 0.0409 |
| 107 | 107 | 0.207 |
| 108 | 108 | 0.268 |
| 109 | 109 | 0.199 |
| 11 | 11 | 0.0413 |
| 110 | 110 | 0.147 |
| 111 | 111 | 0.0714 |
| 112 | 112 | 0.355 |
| 113 | 113 | 0.613 |
| 114 | 114 | 0.233 |
| 115 | 115 | 0.00545 |
| 116 | 116 | 0.188 |
| 117 | 117 | 0.761 |
| 118 | 118 | 0.48 |
| 119 | 119 | 0.0484 |
| 12 | 12 | 0.814 |
| 120 | 120 | 0.866 |
| 121 | 121 | 0.595 |
| 122 | 122 | 0.745 |
| 123 | 123 | 0.712 |
| 124 | 124 | 0.183 |
| 125 | 125 | 0.198 |
| 126 | 126 | 0.629 |
| 127 | 127 | 0.202 |
| 128 | 128 | 0.0822 |
| 129 | 129 | 0.0846 |
| 13 | 13 | 0.394 |
| 130 | 130 | 0.986 |
| 131 | 131 | 0.391 |
| 132 | 132 | 0.737 |
| 133 | 133 | 0.303 |
| 134 | 134 | 0.842 |
| 135 | 135 | 0.318 |
| 136 | 136 | 0.978 |
| 137 | 137 | 0.445 |
| 138 | 138 | 0.947 |
| 139 | 139 | 0.242 |
| 14 | 14 | 0.968 |
| 140 | 140 | 0.502 |
| 141 | 141 | 0.527 |
| 142 | 142 | 0.68 |
| 143 | 143 | 0.0576 |
| 144 | 144 | 0.839 |
| 145 | 145 | 0.671 |
| 146 | 146 | 0.546 |
| 147 | 147 | 0.399 |
| 148 | 148 | 0.0788 |
| 149 | 149 | 0.0169 |
| 15 | 15 | 0.191 |
| 150 | 150 | 0.376 |
| 151 | 151 | 0.521 |
| 152 | 152 | 0.26 |
| 153 | 153 | 0.702 |
| 154 | 154 | 0.952 |
| 155 | 155 | 0.922 |
| 156 | 156 | 0.731 |
| 157 | 157 | 0.33 |
| 158 | 158 | 0.541 |
| 159 | 159 | 0.648 |
| 16 | 16 | 0.113 |
| 160 | 160 | 0.0153 |
| 161 | 161 | 0.262 |
| 162 | 162 | 0.198 |
| 163 | 163 | 0.401 |
| 164 | 164 | 0.367 |
| 165 | 165 | 0.497 |
| 166 | 166 | 0.435 |
| 167 | 167 | 0.897 |
| 168 | 168 | 0.209 |
| 169 | 169 | 0.00965 |
| 17 | 17 | 0.17 |
| 18 | 18 | 0.152 |
| 19 | 19 | 0.0267 |
| 2 | 2 | 0.289 |
| 20 | 20 | 0.658 |
| 21 | 21 | 0.245 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.13 |
| 24 | 24 | 0.397 |
| 25 | 25 | 0.762 |
| 26 | 26 | 0.163 |
| 27 | 27 | 0.114 |
| 28 | 28 | 0.43 |
| 29 | 29 | 0.498 |
| 3 | 3 | 0.385 |
| 30 | 30 | 0.668 |
| 31 | 31 | 0.311 |
| 32 | 32 | 6.30794e-7 |
| 33 | 33 | 0.574 |
| 34 | 34 | 0.556 |
| 35 | 35 | 0.386 |
| 36 | 36 | 0.467 |
| 37 | 37 | 0.236 |
| 38 | 38 | 0.559 |
| 39 | 39 | 0.295 |
| 4 | 4 | 0.383 |
| 40 | 40 | 0.121 |
| 41 | 41 | 0.216 |
| 42 | 42 | 0.974 |
| 43 | 43 | 0.129 |
| 44 | 44 | 0.219 |
| 45 | 45 | 0.488 |
| 46 | 46 | 0.0594 |
| 47 | 47 | 0.237 |
| 48 | 48 | 0.267 |
| 49 | 49 | 0.132 |
| 5 | 5 | 0.175 |
| 50 | 50 | 0.934 |
| 51 | 51 | 0.334 |
| 52 | 52 | 0.301 |
| 53 | 53 | 0.892 |
| 54 | 54 | 0.521 |
| 55 | 55 | 0.378 |
| 56 | 56 | 0.727 |
| 57 | 57 | 0.25 |
| 58 | 58 | 0.409 |
| 59 | 59 | 0.0748 |
| 6 | 6 | 0.228 |
| 60 | 60 | 0.227 |
| 61 | 61 | 0.722 |
| 62 | 62 | 0.276 |
| 63 | 63 | 0.16 |
| 64 | 64 | 0.238 |
| 65 | 65 | 0.0823 |
| 66 | 66 | 0.93 |
| 67 | 67 | 0.297 |
| 68 | 68 | 0.0579 |
| 69 | 69 | 0.162 |
| 7 | 7 | 0.543 |
| 70 | 70 | 0.0299 |
| 71 | 71 | 0.0453 |
| 72 | 72 | 0.988 |
| 73 | 73 | 0.173 |
| 74 | 74 | 0.858 |
| 75 | 75 | 0.461 |
| 76 | 76 | 0.698 |
| 77 | 77 | 0.0324 |
| 78 | 78 | 0.25 |
| 79 | 79 | 0.197 |
| 8 | 8 | 0.0567 |
| 80 | 80 | 0.645 |
| 81 | 81 | 0.273 |
| 82 | 82 | 0.0558 |
| 83 | 83 | 0.315 |
| 84 | 84 | 0.23 |
| 85 | 85 | 0.0252 |
| 86 | 86 | 0.776 |
| 87 | 87 | 0.255 |
| 88 | 88 | 0.675 |
| 89 | 89 | 0.0236 |
| 9 | 9 | 0.308 |
| 90 | 90 | 0.639 |
| 91 | 91 | 0.214 |
| 92 | 92 | 0.14 |
| 93 | 93 | 0.3 |
| 94 | 94 | 0.155 |
| 95 | 95 | 0.522 |
| 96 | 96 | 0.348 |
| 97 | 97 | 0.612 |
| 98 | 98 | 0.225 |
| 99 | 99 | 0.12 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12494
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
