FF:11261-116G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005775 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005775 | ||
|accession_numbers=CAGE;DRX008201;DRR009073;DRZ000498;DRZ001883;DRZ011848;DRZ013233 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037165;DRR041531;DRZ007173 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000037,FF:0000246 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor1.CNhs11923.11261-116G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor1.CNhs11923.11261-116G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor1.CNhs11923.11261-116G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor1.CNhs11923.11261-116G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor1.CNhs11923.11261-116G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11261-116G1 | |id=FF:11261-116G1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000246 | ||
|is_obsolete= | |||
|library_id=CNhs11923 | |||
|library_id_phase_based=2:CNhs11923 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11261 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.TTAGGC.11261 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11261 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.TTAGGC.11261 | |||
|name=Chondrocyte - de diff, donor1 | |name=Chondrocyte - de diff, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11923,LSID842,release011,COMPLETED | |profile_hcage=CNhs11923,LSID842,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA402-R10a | |rna_catalog_number=CA402-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G1 | |rna_tube_id=116G1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.TTAGGC | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.09179793985339e-216!GO:0005737;cytoplasm;7.40651285170041e-181!GO:0043226;organelle;1.18515383465475e-171!GO:0043229;intracellular organelle;2.35490681030839e-171!GO:0043231;intracellular membrane-bound organelle;9.45373308246652e-170!GO:0043227;membrane-bound organelle;1.90129142276388e-169!GO:0044422;organelle part;2.51728231735437e-139!GO:0044446;intracellular organelle part;6.31845929538345e-138!GO:0044444;cytoplasmic part;3.54856511500136e-134!GO:0032991;macromolecular complex;9.66965309573902e-94!GO:0030529;ribonucleoprotein complex;1.44091746669188e-78!GO:0005515;protein binding;5.96096947542583e-76!GO:0044237;cellular metabolic process;5.96096947542583e-76!GO:0044238;primary metabolic process;8.77983917822785e-76!GO:0043170;macromolecule metabolic process;6.88851667040493e-73!GO:0043233;organelle lumen;1.02545492770261e-65!GO:0031974;membrane-enclosed lumen;1.02545492770261e-65!GO:0044428;nuclear part;2.21763349989471e-64!GO:0005739;mitochondrion;8.20469513294647e-62!GO:0003723;RNA binding;1.21938039461583e-60!GO:0005634;nucleus;4.75210555538932e-60!GO:0019538;protein metabolic process;8.86337355396509e-50!GO:0016043;cellular component organization and biogenesis;3.63378394458162e-49!GO:0005840;ribosome;5.73465473156406e-49!GO:0043234;protein complex;1.64825814494646e-48!GO:0031090;organelle membrane;2.67736574223727e-48!GO:0006412;translation;8.72195403469415e-46!GO:0003735;structural constituent of ribosome;2.80975867400981e-44!GO:0044260;cellular macromolecule metabolic process;4.72930822736514e-43!GO:0044267;cellular protein metabolic process;6.2478377782719e-42!GO:0015031;protein transport;8.55466686239357e-42!GO:0044429;mitochondrial part;9.36773612840251e-42!GO:0033036;macromolecule localization;1.39193220892051e-40!GO:0006396;RNA processing;3.20562184268419e-40!GO:0033279;ribosomal subunit;6.23229678327782e-40!GO:0045184;establishment of protein localization;1.63689933696712e-38!GO:0005829;cytosol;3.22876728644874e-38!GO:0008104;protein localization;7.28255498896856e-38!GO:0031981;nuclear lumen;6.04471810624123e-37!GO:0031967;organelle envelope;2.39504996794068e-36!GO:0009059;macromolecule biosynthetic process;4.43242901484662e-36!GO:0009058;biosynthetic process;5.11777107159162e-36!GO:0031975;envelope;5.15646434440704e-36!GO:0043283;biopolymer metabolic process;7.79337029459146e-35!GO:0044249;cellular biosynthetic process;8.83086291291236e-35!GO:0043228;non-membrane-bound organelle;1.02474280966871e-34!GO:0043232;intracellular non-membrane-bound organelle;1.02474280966871e-34!GO:0046907;intracellular transport;3.14467024370408e-34!GO:0065003;macromolecular complex assembly;1.24885858719532e-33!GO:0016071;mRNA metabolic process;5.7778453522552e-33!GO:0008380;RNA splicing;5.68154281195542e-31!GO:0022607;cellular component assembly;4.67240606877299e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.88897182177737e-30!GO:0006996;organelle organization and biogenesis;9.08780580483882e-30!GO:0006397;mRNA processing;6.85993808116018e-29!GO:0010467;gene expression;1.09881153015436e-28!GO:0006886;intracellular protein transport;1.14321221299261e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.29861125687484e-28!GO:0006259;DNA metabolic process;3.42857640401136e-28!GO:0007049;cell cycle;7.19697086257938e-27!GO:0005740;mitochondrial envelope;9.78981001813202e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.83868765694352e-26!GO:0031966;mitochondrial membrane;1.59501419614502e-25!GO:0019866;organelle inner membrane;9.03026305165141e-25!GO:0005743;mitochondrial inner membrane;4.37751103113076e-23!GO:0005783;endoplasmic reticulum;2.55445914340969e-22!GO:0005654;nucleoplasm;2.70968230732927e-22!GO:0000278;mitotic cell cycle;3.74209900831035e-22!GO:0022402;cell cycle process;9.02910705517473e-22!GO:0006119;oxidative phosphorylation;9.59368697833492e-22!GO:0005681;spliceosome;9.62957894022854e-22!GO:0044445;cytosolic part;1.98649748817748e-21!GO:0006457;protein folding;4.76148451412448e-21!GO:0051649;establishment of cellular localization;4.98127495469274e-21!GO:0051641;cellular localization;5.03992434896688e-21!GO:0015934;large ribosomal subunit;1.42714906503657e-20!GO:0015935;small ribosomal subunit;1.99879801976987e-20!GO:0012505;endomembrane system;6.01652274514548e-20!GO:0044455;mitochondrial membrane part;1.36713553844947e-19!GO:0016462;pyrophosphatase activity;4.30522842946213e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.62133794832622e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;8.38445977053799e-19!GO:0017111;nucleoside-triphosphatase activity;1.84209396448583e-18!GO:0000166;nucleotide binding;4.2667606793816e-18!GO:0031980;mitochondrial lumen;5.05861114385236e-18!GO:0005759;mitochondrial matrix;5.05861114385236e-18!GO:0022403;cell cycle phase;6.26959243559497e-18!GO:0044451;nucleoplasm part;8.23602658261029e-18!GO:0016874;ligase activity;1.66456761396281e-17!GO:0005694;chromosome;3.50490395428617e-17!GO:0022618;protein-RNA complex assembly;4.84897288640319e-17!GO:0000087;M phase of mitotic cell cycle;5.84144020110875e-17!GO:0005794;Golgi apparatus;6.64846554161491e-17!GO:0044432;endoplasmic reticulum part;6.65400731070739e-17!GO:0006974;response to DNA damage stimulus;1.13707636554041e-16!GO:0006512;ubiquitin cycle;1.21404231666032e-16!GO:0007067;mitosis;1.21681564702467e-16!GO:0005746;mitochondrial respiratory chain;1.88347719085133e-16!GO:0044265;cellular macromolecule catabolic process;1.89502522835988e-16!GO:0048770;pigment granule;1.8967800732231e-16!GO:0042470;melanosome;1.8967800732231e-16!GO:0003676;nucleic acid binding;2.85017556587331e-16!GO:0051186;cofactor metabolic process;6.06554916485535e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.46087585070899e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;7.64985163878155e-16!GO:0043285;biopolymer catabolic process;1.51834667351351e-15!GO:0019941;modification-dependent protein catabolic process;1.5287124709919e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.5287124709919e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.76105767565011e-15!GO:0005730;nucleolus;2.33137853091282e-15!GO:0044257;cellular protein catabolic process;2.37713236966211e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.54720557956742e-15!GO:0005761;mitochondrial ribosome;5.47641459545295e-15!GO:0000313;organellar ribosome;5.47641459545295e-15!GO:0044427;chromosomal part;5.49565221684959e-15!GO:0006605;protein targeting;5.72847591664704e-15!GO:0051301;cell division;6.04350078945193e-15!GO:0008135;translation factor activity, nucleic acid binding;1.103241334915e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.18642020406111e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.97259619392273e-14!GO:0009057;macromolecule catabolic process;2.26537248307829e-14!GO:0000279;M phase;2.73637332429609e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.60654436154435e-14!GO:0003954;NADH dehydrogenase activity;3.60654436154435e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.60654436154435e-14!GO:0006281;DNA repair;4.73235827357497e-14!GO:0051082;unfolded protein binding;1.02381515514624e-13!GO:0030163;protein catabolic process;1.13262286932973e-13!GO:0044248;cellular catabolic process;1.15914752822732e-13!GO:0048193;Golgi vesicle transport;1.4179820797756e-13!GO:0008134;transcription factor binding;1.8865175909631e-13!GO:0017076;purine nucleotide binding;5.81276112454973e-13!GO:0032553;ribonucleotide binding;5.9990342517428e-13!GO:0032555;purine ribonucleotide binding;5.9990342517428e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.42716555440058e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.06243548322167e-12!GO:0042773;ATP synthesis coupled electron transport;1.06243548322167e-12!GO:0006732;coenzyme metabolic process;1.1549674689469e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.77311126202792e-12!GO:0045271;respiratory chain complex I;1.77311126202792e-12!GO:0005747;mitochondrial respiratory chain complex I;1.77311126202792e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.17170986869805e-12!GO:0009719;response to endogenous stimulus;4.95571825801219e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;9.52382430299697e-12!GO:0000375;RNA splicing, via transesterification reactions;9.52382430299697e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.52382430299697e-12!GO:0006260;DNA replication;1.02352205628562e-11!GO:0005793;ER-Golgi intermediate compartment;1.06247460517424e-11!GO:0006461;protein complex assembly;1.12986963282184e-11!GO:0016192;vesicle-mediated transport;1.74404520124556e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.02883170152293e-11!GO:0009055;electron carrier activity;2.40227803285671e-11!GO:0003743;translation initiation factor activity;2.68243838569934e-11!GO:0006413;translational initiation;2.83760312537231e-11!GO:0005789;endoplasmic reticulum membrane;5.85642232104049e-11!GO:0051276;chromosome organization and biogenesis;6.35016024406388e-11!GO:0043412;biopolymer modification;9.5206635142739e-11!GO:0005524;ATP binding;1.08376951498852e-10!GO:0016070;RNA metabolic process;1.1826646249199e-10!GO:0051726;regulation of cell cycle;1.61842294040904e-10!GO:0000074;regulation of progression through cell cycle;1.92356387675211e-10!GO:0005635;nuclear envelope;2.16583058465518e-10!GO:0031965;nuclear membrane;2.17739001769606e-10!GO:0032559;adenyl ribonucleotide binding;2.18582742496104e-10!GO:0042254;ribosome biogenesis and assembly;2.67601870114252e-10!GO:0030554;adenyl nucleotide binding;2.84643564796741e-10!GO:0012501;programmed cell death;3.48154046838802e-10!GO:0016887;ATPase activity;4.27946337409176e-10!GO:0042623;ATPase activity, coupled;4.93205043070365e-10!GO:0006915;apoptosis;5.28085995337201e-10!GO:0044453;nuclear membrane part;5.67717343278079e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.9363054336666e-10!GO:0009259;ribonucleotide metabolic process;7.04076708931835e-10!GO:0006913;nucleocytoplasmic transport;8.10804383001612e-10!GO:0006446;regulation of translational initiation;8.60167565448851e-10!GO:0006163;purine nucleotide metabolic process;9.44454288957836e-10!GO:0008639;small protein conjugating enzyme activity;1.09967873001954e-09!GO:0006464;protein modification process;1.17786393350721e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.38341296477675e-09!GO:0051169;nuclear transport;1.61601069615128e-09!GO:0009150;purine ribonucleotide metabolic process;1.63208185349048e-09!GO:0019787;small conjugating protein ligase activity;1.84873907318469e-09!GO:0004842;ubiquitin-protein ligase activity;2.02961633484235e-09!GO:0015630;microtubule cytoskeleton;2.91990256995002e-09!GO:0005788;endoplasmic reticulum lumen;2.93572012733467e-09!GO:0008565;protein transporter activity;3.29225062298703e-09!GO:0008219;cell death;3.51463413580706e-09!GO:0016265;death;3.51463413580706e-09!GO:0030120;vesicle coat;6.52642757973161e-09!GO:0030662;coated vesicle membrane;6.52642757973161e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.56603947561315e-09!GO:0045333;cellular respiration;7.65773023175576e-09!GO:0016604;nuclear body;7.8620318003143e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.14975023482397e-09!GO:0006164;purine nucleotide biosynthetic process;9.21744503887665e-09!GO:0009141;nucleoside triphosphate metabolic process;9.73756796378658e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.97263137424308e-09!GO:0009060;aerobic respiration;1.05884244897222e-08!GO:0016881;acid-amino acid ligase activity;1.0872928370751e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.17935309431955e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.17935309431955e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.57250502585851e-08!GO:0009260;ribonucleotide biosynthetic process;1.61607140771975e-08!GO:0006399;tRNA metabolic process;1.95191073058637e-08!GO:0015986;ATP synthesis coupled proton transport;2.20879737530324e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.20879737530324e-08!GO:0005643;nuclear pore;2.27879735088153e-08!GO:0065002;intracellular protein transport across a membrane;2.92610448507632e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.16311144578469e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.16311144578469e-08!GO:0016491;oxidoreductase activity;3.29153734822584e-08!GO:0009056;catabolic process;3.29153734822584e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.01877011178853e-08!GO:0043687;post-translational protein modification;4.22844229623513e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.30392822648704e-08!GO:0051188;cofactor biosynthetic process;4.61616798692235e-08!GO:0048475;coated membrane;4.91276500673407e-08!GO:0030117;membrane coat;4.91276500673407e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.97216783511953e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.97216783511953e-08!GO:0017038;protein import;5.05645314652939e-08!GO:0000775;chromosome, pericentric region;5.71590226733577e-08!GO:0019829;cation-transporting ATPase activity;7.56305865332822e-08!GO:0003712;transcription cofactor activity;8.26325834343917e-08!GO:0006366;transcription from RNA polymerase II promoter;8.42539504087154e-08!GO:0048523;negative regulation of cellular process;9.7315006302722e-08!GO:0046034;ATP metabolic process;1.02171328119282e-07!GO:0005768;endosome;1.05298434941918e-07!GO:0044431;Golgi apparatus part;1.06889287121363e-07!GO:0006323;DNA packaging;1.07296967358787e-07!GO:0065004;protein-DNA complex assembly;1.19888574056388e-07!GO:0005813;centrosome;1.35657554313181e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.60218753139939e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.60218753139939e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.60218753139939e-07!GO:0005815;microtubule organizing center;1.76089950113427e-07!GO:0004386;helicase activity;1.81603997113317e-07!GO:0006099;tricarboxylic acid cycle;2.05130193996086e-07!GO:0046356;acetyl-CoA catabolic process;2.05130193996086e-07!GO:0051246;regulation of protein metabolic process;2.4023614308625e-07!GO:0051187;cofactor catabolic process;2.4023614308625e-07!GO:0046930;pore complex;2.53042397857137e-07!GO:0043038;amino acid activation;3.05550736753478e-07!GO:0006418;tRNA aminoacylation for protein translation;3.05550736753478e-07!GO:0043039;tRNA aminoacylation;3.05550736753478e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.5096402766235e-07!GO:0005819;spindle;3.52511335525982e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.60780744071187e-07!GO:0006754;ATP biosynthetic process;3.6528182754335e-07!GO:0006753;nucleoside phosphate metabolic process;3.6528182754335e-07!GO:0009109;coenzyme catabolic process;3.65577453259799e-07!GO:0000785;chromatin;3.85475376808231e-07!GO:0016049;cell growth;5.00271039177298e-07!GO:0043623;cellular protein complex assembly;5.19245136285762e-07!GO:0008361;regulation of cell size;5.28910301872438e-07!GO:0006084;acetyl-CoA metabolic process;6.05697531539808e-07!GO:0009117;nucleotide metabolic process;6.23348285728293e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.81155189963916e-07!GO:0008026;ATP-dependent helicase activity;6.93451744785547e-07!GO:0003924;GTPase activity;1.00783971074756e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.02346983384133e-06!GO:0003697;single-stranded DNA binding;1.11570740201057e-06!GO:0005773;vacuole;1.12581667337769e-06!GO:0007051;spindle organization and biogenesis;1.22854679909723e-06!GO:0043566;structure-specific DNA binding;1.40262198155325e-06!GO:0050657;nucleic acid transport;1.42420609098643e-06!GO:0051236;establishment of RNA localization;1.42420609098643e-06!GO:0050658;RNA transport;1.42420609098643e-06!GO:0016607;nuclear speck;1.45010360968173e-06!GO:0006364;rRNA processing;1.45563045717104e-06!GO:0009108;coenzyme biosynthetic process;1.46675660514779e-06!GO:0042981;regulation of apoptosis;1.6952048937536e-06!GO:0051325;interphase;1.69610307228816e-06!GO:0006403;RNA localization;1.79045147661567e-06!GO:0001558;regulation of cell growth;1.82148324161144e-06!GO:0043067;regulation of programmed cell death;2.21657832291518e-06!GO:0006916;anti-apoptosis;2.38992966403848e-06!GO:0007005;mitochondrion organization and biogenesis;2.39101556439211e-06!GO:0051329;interphase of mitotic cell cycle;2.48217295731718e-06!GO:0048519;negative regulation of biological process;2.60509205230151e-06!GO:0016072;rRNA metabolic process;2.67919869863873e-06!GO:0006333;chromatin assembly or disassembly;2.67919869863873e-06!GO:0043069;negative regulation of programmed cell death;2.87951078414364e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.91023334529005e-06!GO:0045259;proton-transporting ATP synthase complex;3.26209965106059e-06!GO:0043066;negative regulation of apoptosis;3.57190025672846e-06!GO:0051789;response to protein stimulus;3.81152173753372e-06!GO:0006986;response to unfolded protein;3.81152173753372e-06!GO:0006613;cotranslational protein targeting to membrane;3.82716805388269e-06!GO:0000323;lytic vacuole;4.29473957947782e-06!GO:0005764;lysosome;4.29473957947782e-06!GO:0000139;Golgi membrane;6.1379973105222e-06!GO:0016787;hydrolase activity;6.17032020852879e-06!GO:0005798;Golgi-associated vesicle;6.45870127405512e-06!GO:0004298;threonine endopeptidase activity;6.8529927965038e-06!GO:0008654;phospholipid biosynthetic process;7.18597076860637e-06!GO:0000151;ubiquitin ligase complex;7.77799599430979e-06!GO:0006752;group transfer coenzyme metabolic process;7.97637639296111e-06!GO:0006091;generation of precursor metabolites and energy;8.31746528641476e-06!GO:0016853;isomerase activity;8.52342856482051e-06!GO:0051170;nuclear import;9.95399954463306e-06!GO:0016779;nucleotidyltransferase activity;1.00637348203642e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.10654846707642e-05!GO:0006334;nucleosome assembly;1.1401740763129e-05!GO:0000245;spliceosome assembly;1.24853896389812e-05!GO:0016567;protein ubiquitination;1.24853896389812e-05!GO:0006606;protein import into nucleus;1.29935729754938e-05!GO:0032446;protein modification by small protein conjugation;1.30507691247496e-05!GO:0005762;mitochondrial large ribosomal subunit;1.39188449788864e-05!GO:0000315;organellar large ribosomal subunit;1.39188449788864e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.40642217544788e-05!GO:0016859;cis-trans isomerase activity;1.63230864102461e-05!GO:0005667;transcription factor complex;1.66368110272342e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.88919862651987e-05!GO:0044440;endosomal part;2.03636349588792e-05!GO:0010008;endosome membrane;2.03636349588792e-05!GO:0031252;leading edge;2.11345939366334e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.15353311970997e-05!GO:0045786;negative regulation of progression through cell cycle;2.42994849199954e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.46183402098903e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.4831662294069e-05!GO:0030867;rough endoplasmic reticulum membrane;2.62195074059981e-05!GO:0045454;cell redox homeostasis;2.68399845663508e-05!GO:0051028;mRNA transport;2.69825381720178e-05!GO:0031324;negative regulation of cellular metabolic process;2.70724927874839e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.81426174122326e-05!GO:0031988;membrane-bound vesicle;2.93613751149853e-05!GO:0019843;rRNA binding;2.97565950876252e-05!GO:0005770;late endosome;3.0183275599674e-05!GO:0000075;cell cycle checkpoint;3.25095697523488e-05!GO:0050794;regulation of cellular process;4.10678128342597e-05!GO:0007010;cytoskeleton organization and biogenesis;4.15633782980955e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.72009321529621e-05!GO:0031497;chromatin assembly;5.24764650120015e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.85136117969082e-05!GO:0000314;organellar small ribosomal subunit;6.19850321170076e-05!GO:0005763;mitochondrial small ribosomal subunit;6.19850321170076e-05!GO:0006793;phosphorus metabolic process;6.62915839484816e-05!GO:0006796;phosphate metabolic process;6.62915839484816e-05!GO:0005791;rough endoplasmic reticulum;6.94226964161111e-05!GO:0005657;replication fork;7.73687542067048e-05!GO:0005525;GTP binding;8.06804612384294e-05!GO:0006612;protein targeting to membrane;0.000103236872166022!GO:0006261;DNA-dependent DNA replication;0.000114369761277534!GO:0044262;cellular carbohydrate metabolic process;0.000117754088187298!GO:0005769;early endosome;0.000118136435098843!GO:0030133;transport vesicle;0.000123306195863958!GO:0000776;kinetochore;0.000131871019756569!GO:0031982;vesicle;0.000139501789161775!GO:0031410;cytoplasmic vesicle;0.000157559138648285!GO:0016310;phosphorylation;0.000162768381430291!GO:0003899;DNA-directed RNA polymerase activity;0.00016610738124772!GO:0046474;glycerophospholipid biosynthetic process;0.000168569835660662!GO:0005905;coated pit;0.000170419613639547!GO:0040008;regulation of growth;0.000170654281173173!GO:0030036;actin cytoskeleton organization and biogenesis;0.000170654281173173!GO:0003724;RNA helicase activity;0.000176023619411973!GO:0019867;outer membrane;0.000191967613510769!GO:0016568;chromatin modification;0.000206755153249725!GO:0016740;transferase activity;0.000206755153249725!GO:0005048;signal sequence binding;0.000215031589227864!GO:0009892;negative regulation of metabolic process;0.000230009564734892!GO:0030663;COPI coated vesicle membrane;0.000254598987535292!GO:0030126;COPI vesicle coat;0.000254598987535292!GO:0051427;hormone receptor binding;0.00026514256356881!GO:0031968;organelle outer membrane;0.000279997172049567!GO:0033116;ER-Golgi intermediate compartment membrane;0.000286145597602671!GO:0043021;ribonucleoprotein binding;0.000300085096432072!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000349921162943341!GO:0004576;oligosaccharyl transferase activity;0.000357063919943685!GO:0008250;oligosaccharyl transferase complex;0.000371489391724471!GO:0051052;regulation of DNA metabolic process;0.00045380502441296!GO:0016564;transcription repressor activity;0.000480358377539943!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000485601687217413!GO:0005741;mitochondrial outer membrane;0.000497460235250399!GO:0008092;cytoskeletal protein binding;0.000498976239892494!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000511979212275589!GO:0003713;transcription coactivator activity;0.000513640956401619!GO:0035257;nuclear hormone receptor binding;0.000515107550088339!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000534974894395013!GO:0046489;phosphoinositide biosynthetic process;0.0005888974178009!GO:0006302;double-strand break repair;0.000618892289116901!GO:0032561;guanyl ribonucleotide binding;0.000626739184670017!GO:0019001;guanyl nucleotide binding;0.000626739184670017!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000669957504973829!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000682626684338326!GO:0008094;DNA-dependent ATPase activity;0.000705581044419852!GO:0005885;Arp2/3 protein complex;0.000716731436491578!GO:0006950;response to stress;0.000740926775844894!GO:0030658;transport vesicle membrane;0.000745150388862686!GO:0030137;COPI-coated vesicle;0.000788857976432124!GO:0018196;peptidyl-asparagine modification;0.00080684345383385!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00080684345383385!GO:0007088;regulation of mitosis;0.000826164192777259!GO:0007052;mitotic spindle organization and biogenesis;0.000896846857493291!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000910573265884076!GO:0003714;transcription corepressor activity;0.000946341502878401!GO:0003690;double-stranded DNA binding;0.000983252948562799!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000989110242327635!GO:0015399;primary active transmembrane transporter activity;0.000989110242327635!GO:0048522;positive regulation of cellular process;0.00099422666369476!GO:0051920;peroxiredoxin activity;0.00103207588013126!GO:0016563;transcription activator activity;0.00104821982023386!GO:0000082;G1/S transition of mitotic cell cycle;0.00107440948595908!GO:0030118;clathrin coat;0.00115377320462387!GO:0030029;actin filament-based process;0.00116432336214654!GO:0007059;chromosome segregation;0.00116432336214654!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00125692142637893!GO:0009165;nucleotide biosynthetic process;0.00137500907522884!GO:0030132;clathrin coat of coated pit;0.00140776867346368!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00140776867346368!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00140776867346368!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00140776867346368!GO:0051168;nuclear export;0.00142742456921176!GO:0048500;signal recognition particle;0.00156949478800677!GO:0015992;proton transport;0.00165355373668769!GO:0042802;identical protein binding;0.00168785518806776!GO:0043681;protein import into mitochondrion;0.0017003177506601!GO:0015631;tubulin binding;0.00174847346606012!GO:0016363;nuclear matrix;0.00178479416129544!GO:0016044;membrane organization and biogenesis;0.00178882912132252!GO:0006818;hydrogen transport;0.00181038240198288!GO:0007050;cell cycle arrest;0.00185260410500097!GO:0006383;transcription from RNA polymerase III promoter;0.00188284749026001!GO:0007093;mitotic cell cycle checkpoint;0.00189297759355601!GO:0051252;regulation of RNA metabolic process;0.00197158294398119!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00200080491203047!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00204146002976666!GO:0046467;membrane lipid biosynthetic process;0.00220652966292345!GO:0006626;protein targeting to mitochondrion;0.00221900935512262!GO:0006310;DNA recombination;0.00228971237781847!GO:0030660;Golgi-associated vesicle membrane;0.00236605118684551!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00240544505221002!GO:0005520;insulin-like growth factor binding;0.00240544505221002!GO:0046483;heterocycle metabolic process;0.00241131987893631!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0024424016212598!GO:0048471;perinuclear region of cytoplasm;0.00245989380670445!GO:0008186;RNA-dependent ATPase activity;0.00250180704056167!GO:0006414;translational elongation;0.00256459035645781!GO:0003684;damaged DNA binding;0.0025740057233972!GO:0016481;negative regulation of transcription;0.00260880018174738!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00270827821916914!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00284852580433773!GO:0045047;protein targeting to ER;0.00284852580433773!GO:0007243;protein kinase cascade;0.00288929825892228!GO:0003729;mRNA binding;0.00331662229337518!GO:0030880;RNA polymerase complex;0.00350443148633956!GO:0000059;protein import into nucleus, docking;0.00364364981425856!GO:0006839;mitochondrial transport;0.00369006352398018!GO:0001726;ruffle;0.00380595608608435!GO:0005874;microtubule;0.00381418618097004!GO:0006891;intra-Golgi vesicle-mediated transport;0.00412692451709803!GO:0050789;regulation of biological process;0.00423548975286734!GO:0006650;glycerophospholipid metabolic process;0.00427247241046871!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00433201880034878!GO:0030134;ER to Golgi transport vesicle;0.00433201880034878!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00470459002603218!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00470459002603218!GO:0031543;peptidyl-proline dioxygenase activity;0.00470459002603218!GO:0007006;mitochondrial membrane organization and biogenesis;0.00471630962654597!GO:0030119;AP-type membrane coat adaptor complex;0.00480851070162594!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00498788014759897!GO:0008312;7S RNA binding;0.00500128265950489!GO:0031072;heat shock protein binding;0.00505670490023924!GO:0006509;membrane protein ectodomain proteolysis;0.00515575943947392!GO:0033619;membrane protein proteolysis;0.00515575943947392!GO:0019899;enzyme binding;0.00517758074091118!GO:0030125;clathrin vesicle coat;0.00553575143252885!GO:0030665;clathrin coated vesicle membrane;0.00553575143252885!GO:0019798;procollagen-proline dioxygenase activity;0.00569602382627597!GO:0008022;protein C-terminus binding;0.00569602382627597!GO:0000786;nucleosome;0.00584769609442731!GO:0043284;biopolymer biosynthetic process;0.00594362806308554!GO:0019752;carboxylic acid metabolic process;0.0060311361393464!GO:0004004;ATP-dependent RNA helicase activity;0.00631426424368927!GO:0008139;nuclear localization sequence binding;0.00659546570250122!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00672088240842611!GO:0000428;DNA-directed RNA polymerase complex;0.00672088240842611!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00673153897101905!GO:0030176;integral to endoplasmic reticulum membrane;0.00674180862935089!GO:0007034;vacuolar transport;0.00675121782724101!GO:0003746;translation elongation factor activity;0.00685951407540593!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00685951407540593!GO:0006082;organic acid metabolic process;0.00693866819328247!GO:0006497;protein amino acid lipidation;0.00707253946059046!GO:0003678;DNA helicase activity;0.00708282687453119!GO:0030027;lamellipodium;0.00712348291019281!GO:0043488;regulation of mRNA stability;0.00717502385194295!GO:0043487;regulation of RNA stability;0.00717502385194295!GO:0030127;COPII vesicle coat;0.00720535729651105!GO:0012507;ER to Golgi transport vesicle membrane;0.00720535729651105!GO:0005583;fibrillar collagen;0.00742305439160115!GO:0044452;nucleolar part;0.00757583234023432!GO:0006506;GPI anchor biosynthetic process;0.00763426152249732!GO:0006979;response to oxidative stress;0.00763426152249732!GO:0030131;clathrin adaptor complex;0.00776626717633029!GO:0016197;endosome transport;0.00782573677620019!GO:0022890;inorganic cation transmembrane transporter activity;0.0078429356048815!GO:0006118;electron transport;0.00799895161400556!GO:0003682;chromatin binding;0.00816773169847396!GO:0030659;cytoplasmic vesicle membrane;0.00816773169847396!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00824923038969233!GO:0000228;nuclear chromosome;0.00837987501587337!GO:0008180;signalosome;0.00856952008016047!GO:0043492;ATPase activity, coupled to movement of substances;0.00877996448017607!GO:0030521;androgen receptor signaling pathway;0.008955557539786!GO:0006740;NADPH regeneration;0.00904589777806331!GO:0006098;pentose-phosphate shunt;0.00904589777806331!GO:0005684;U2-dependent spliceosome;0.00914092985499113!GO:0017166;vinculin binding;0.00915476317404072!GO:0035258;steroid hormone receptor binding;0.00927445749708815!GO:0008154;actin polymerization and/or depolymerization;0.00932078945619776!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00936264231111252!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00936264231111252!GO:0015002;heme-copper terminal oxidase activity;0.00936264231111252!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00936264231111252!GO:0004129;cytochrome-c oxidase activity;0.00936264231111252!GO:0008033;tRNA processing;0.00938846544214783!GO:0003756;protein disulfide isomerase activity;0.00946730619020185!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00946730619020185!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00952853344321509!GO:0065009;regulation of a molecular function;0.00963653219924469!GO:0000910;cytokinesis;0.00971364091045953!GO:0005876;spindle microtubule;0.00976776145823434!GO:0006505;GPI anchor metabolic process;0.00994452645089904!GO:0006352;transcription initiation;0.00997710334265943!GO:0006595;polyamine metabolic process;0.0101847814514274!GO:0051287;NAD binding;0.0103750887233342!GO:0030041;actin filament polymerization;0.0104039507879029!GO:0051540;metal cluster binding;0.010758765694641!GO:0051536;iron-sulfur cluster binding;0.010758765694641!GO:0007264;small GTPase mediated signal transduction;0.0108119376730151!GO:0003711;transcription elongation regulator activity;0.0113274125928821!GO:0050662;coenzyme binding;0.0116325715465702!GO:0051087;chaperone binding;0.0119751071469561!GO:0030384;phosphoinositide metabolic process;0.0120243527190153!GO:0048487;beta-tubulin binding;0.0122262849539901!GO:0007017;microtubule-based process;0.0123342365158064!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0123720574458489!GO:0000049;tRNA binding;0.0125453347510632!GO:0051128;regulation of cellular component organization and biogenesis;0.0127088696337412!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0127088696337412!GO:0006402;mRNA catabolic process;0.0129232491511727!GO:0030032;lamellipodium biogenesis;0.0130221957176781!GO:0007346;regulation of progression through mitotic cell cycle;0.0132966329042938!GO:0009112;nucleobase metabolic process;0.0134043906516765!GO:0016251;general RNA polymerase II transcription factor activity;0.0134043906516765!GO:0008632;apoptotic program;0.0136568423335696!GO:0005637;nuclear inner membrane;0.0140649564298797!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0142096666671331!GO:0007041;lysosomal transport;0.0144278399467904!GO:0031418;L-ascorbic acid binding;0.0146356307538583!GO:0031124;mRNA 3'-end processing;0.0150303889544622!GO:0043433;negative regulation of transcription factor activity;0.0151904719818829!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0153120541989563!GO:0005862;muscle thin filament tropomyosin;0.0155977325016875!GO:0006520;amino acid metabolic process;0.0157011432978031!GO:0005869;dynactin complex;0.0158259359146026!GO:0048468;cell development;0.0160298101620118!GO:0000096;sulfur amino acid metabolic process;0.0161859766444923!GO:0016408;C-acyltransferase activity;0.0162857297106935!GO:0006275;regulation of DNA replication;0.0167350635961988!GO:0000339;RNA cap binding;0.0170008572783102!GO:0006401;RNA catabolic process;0.0170824035511955!GO:0007040;lysosome organization and biogenesis;0.0171763997554789!GO:0051098;regulation of binding;0.017218111097259!GO:0006289;nucleotide-excision repair;0.0172181538711751!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0175345181888303!GO:0009116;nucleoside metabolic process;0.01781674529924!GO:0031902;late endosome membrane;0.0178919431030473!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0181768433947125!GO:0033043;regulation of organelle organization and biogenesis;0.0181768433947125!GO:0006611;protein export from nucleus;0.0182298253581239!GO:0030833;regulation of actin filament polymerization;0.0182712588856672!GO:0004527;exonuclease activity;0.0182712588856672!GO:0007021;tubulin folding;0.0188806117093945!GO:0016860;intramolecular oxidoreductase activity;0.0195061848112723!GO:0005669;transcription factor TFIID complex;0.0195459995988932!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0199488734549453!GO:0000922;spindle pole;0.020328480363683!GO:0042158;lipoprotein biosynthetic process;0.0203995503095481!GO:0007033;vacuole organization and biogenesis;0.0205679789355565!GO:0043022;ribosome binding;0.0206703811480951!GO:0051539;4 iron, 4 sulfur cluster binding;0.0206703811480951!GO:0004177;aminopeptidase activity;0.0206723888481294!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0207188149198423!GO:0016272;prefoldin complex;0.0208695704632035!GO:0043596;nuclear replication fork;0.0218940355886569!GO:0008234;cysteine-type peptidase activity;0.0220773803284124!GO:0005832;chaperonin-containing T-complex;0.0221006483236312!GO:0008484;sulfuric ester hydrolase activity;0.0223904245887023!GO:0031901;early endosome membrane;0.0225517063155814!GO:0031529;ruffle organization and biogenesis;0.0229433812538038!GO:0048518;positive regulation of biological process;0.0236778112327133!GO:0030308;negative regulation of cell growth;0.0236990698152162!GO:0045792;negative regulation of cell size;0.0242669966033653!GO:0050681;androgen receptor binding;0.0242966476961844!GO:0044433;cytoplasmic vesicle part;0.0248174876696261!GO:0006354;RNA elongation;0.0250607301185678!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0250607301185678!GO:0006778;porphyrin metabolic process;0.0256265117119474!GO:0033013;tetrapyrrole metabolic process;0.0256265117119474!GO:0045941;positive regulation of transcription;0.0257137933612582!GO:0000209;protein polyubiquitination;0.0266041598329224!GO:0005581;collagen;0.0267762963646709!GO:0004518;nuclease activity;0.0269980222889079!GO:0005801;cis-Golgi network;0.0275059223734151!GO:0009225;nucleotide-sugar metabolic process;0.0275404762933951!GO:0006213;pyrimidine nucleoside metabolic process;0.0275695021204109!GO:0045893;positive regulation of transcription, DNA-dependent;0.0276734579419384!GO:0031625;ubiquitin protein ligase binding;0.0277207623016495!GO:0044420;extracellular matrix part;0.0282855467095267!GO:0008147;structural constituent of bone;0.0286891157435644!GO:0005595;collagen type XII;0.0290301237952373!GO:0004674;protein serine/threonine kinase activity;0.0291536256412458!GO:0006790;sulfur metabolic process;0.0293367387257313!GO:0000792;heterochromatin;0.029353852287384!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0300169310093355!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0300169310093355!GO:0032984;macromolecular complex disassembly;0.0306430112341869!GO:0005784;translocon complex;0.0310813174294951!GO:0030433;ER-associated protein catabolic process;0.0314622496548021!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0314622496548021!GO:0008168;methyltransferase activity;0.0316668311734536!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0316668311734536!GO:0030508;thiol-disulfide exchange intermediate activity;0.0317435870800724!GO:0031371;ubiquitin conjugating enzyme complex;0.0317435870800724!GO:0042585;germinal vesicle;0.0318161476532517!GO:0006739;NADP metabolic process;0.0323466294767094!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0324235214289069!GO:0008652;amino acid biosynthetic process;0.0326901704492315!GO:0030199;collagen fibril organization;0.0330681930513308!GO:0008047;enzyme activator activity;0.033144541259853!GO:0009967;positive regulation of signal transduction;0.0332535064644093!GO:0035035;histone acetyltransferase binding;0.0332535064644093!GO:0019222;regulation of metabolic process;0.0334340407340695!GO:0032508;DNA duplex unwinding;0.0336853855420841!GO:0032392;DNA geometric change;0.0336853855420841!GO:0042168;heme metabolic process;0.033907624199619!GO:0031577;spindle checkpoint;0.0349185145899602!GO:0030518;steroid hormone receptor signaling pathway;0.0349185145899602!GO:0016741;transferase activity, transferring one-carbon groups;0.0353978389899545!GO:0004003;ATP-dependent DNA helicase activity;0.0355277232414973!GO:0005774;vacuolar membrane;0.0362826605304292!GO:0032906;transforming growth factor-beta2 production;0.0363848176085622!GO:0032909;regulation of transforming growth factor-beta2 production;0.0363848176085622!GO:0007030;Golgi organization and biogenesis;0.0369382778799161!GO:0000287;magnesium ion binding;0.0375792721493119!GO:0022415;viral reproductive process;0.0377891768163736!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0385858595642931!GO:0010257;NADH dehydrogenase complex assembly;0.0385858595642931!GO:0033108;mitochondrial respiratory chain complex assembly;0.0385858595642931!GO:0009119;ribonucleoside metabolic process;0.0386823525441251!GO:0045892;negative regulation of transcription, DNA-dependent;0.0400026376114663!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0402561584363465!GO:0000152;nuclear ubiquitin ligase complex;0.0407231424891813!GO:0030911;TPR domain binding;0.0408284340723764!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0418559823172926!GO:0012506;vesicle membrane;0.0419149865060611!GO:0051101;regulation of DNA binding;0.0423837776513653!GO:0043065;positive regulation of apoptosis;0.042777753686881!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0432647680101174!GO:0003923;GPI-anchor transamidase activity;0.0434281854762531!GO:0016255;attachment of GPI anchor to protein;0.0434281854762531!GO:0042765;GPI-anchor transamidase complex;0.0434281854762531!GO:0030496;midbody;0.0439486763803734!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0441273314824985!GO:0006892;post-Golgi vesicle-mediated transport;0.0442974075943021!GO:0046983;protein dimerization activity;0.0446033062260556!GO:0003779;actin binding;0.0450580821230773!GO:0015036;disulfide oxidoreductase activity;0.0457715532046882!GO:0006007;glucose catabolic process;0.0459758613805915!GO:0032200;telomere organization and biogenesis;0.0459758613805915!GO:0000723;telomere maintenance;0.0459758613805915!GO:0006378;mRNA polyadenylation;0.0460637734567916!GO:0000086;G2/M transition of mitotic cell cycle;0.0468172084041578!GO:0006268;DNA unwinding during replication;0.0468255902669531!GO:0051059;NF-kappaB binding;0.0473005331601389!GO:0045936;negative regulation of phosphate metabolic process;0.0473005331601389!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0474774059155912!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0474774059155912!GO:0006376;mRNA splice site selection;0.048370182177275!GO:0000389;nuclear mRNA 3'-splice site recognition;0.048370182177275!GO:0022408;negative regulation of cell-cell adhesion;0.048870279136203!GO:0030145;manganese ion binding;0.0488923064755289!GO:0043241;protein complex disassembly;0.0490454340936633!GO:0008538;proteasome activator activity;0.0491006224062032!GO:0006405;RNA export from nucleus;0.0494508770267373!GO:0006284;base-excision repair;0.0495546125805125 | |||
|sample_id=11261 | |sample_id=11261 | ||
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun | |sample_note=Originally library704 tailing failed, the remaining sample is being rerun | ||
| Line 76: | Line 105: | ||
|sample_tissue=cartilage | |sample_tissue=cartilage | ||
|top_motifs=FOXL1:2.49296008799;ALX4:2.05032625912;HES1:1.87471296284;EVI1:1.72634938723;TEF:1.63569720909;NKX3-1:1.60673404067;POU1F1:1.52058688834;TFCP2:1.50270835405;ZNF384:1.43474379712;ESR1:1.40534640916;SMAD1..7,9:1.390282686;MYBL2:1.38783030181;LHX3,4:1.37225359911;UFEwm:1.22423260807;PPARG:1.19349985075;HSF1,2:1.17324570239;PRDM1:1.12668886813;EN1,2:1.08916311678;HAND1,2:1.08182023202;POU5F1:1.06442960683;KLF4:1.02067414963;TEAD1:0.919941840844;TAL1_TCF{3,4,12}:0.880422521553;MYB:0.875698664028;FOX{I1,J2}:0.833841867599;ATF6:0.818455921062;NKX2-2,8:0.803999897161;HMGA1,2:0.80276265808;GLI1..3:0.794539802112;HOX{A5,B5}:0.785522716677;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.780468260719;HOX{A4,D4}:0.755783258832;HOX{A6,A7,B6,B7}:0.733079467314;NR1H4:0.71896569757;ZNF238:0.704644904569;GCM1,2:0.702872466092;IKZF1:0.695986262344;SPZ1:0.679951645638;MAFB:0.6688710864;HBP1_HMGB_SSRP1_UBTF:0.662492216639;RXR{A,B,G}:0.627411585546;XBP1:0.612489665544;NR3C1:0.603923287665;VSX1,2:0.597076408082;MTE{core}:0.584887963368;NFATC1..3:0.562712102635;TFDP1:0.554643237328;NFE2L1:0.549792189822;ZNF423:0.540187321126;AIRE:0.520858191563;E2F1..5:0.513555816823;FOXD3:0.507100119749;PAX1,9:0.501711154367;STAT5{A,B}:0.494382636256;GTF2I:0.478518434489;GTF2A1,2:0.467249492586;TLX1..3_NFIC{dimer}:0.435828151775;XCPE1{core}:0.435659003787;NANOG{mouse}:0.421321030826;RREB1:0.420967140545;GATA4:0.419490303601;PAX5:0.4173639302;ZIC1..3:0.41466701315;GZF1:0.396645466717;MTF1:0.38102251343;GFI1B:0.378500165457;TBP:0.361609140596;POU6F1:0.3550640038;MAZ:0.327524977514;NKX3-2:0.31876553672;ZNF148:0.272861393002;TFAP2B:0.271927772984;EBF1:0.257805736386;HIC1:0.255457338564;ELK1,4_GABP{A,B1}:0.227526998357;AHR_ARNT_ARNT2:0.222584877718;RBPJ:0.222166382203;HLF:0.205986986487;TFAP4:0.205237441233;BPTF:0.199207185659;PRRX1,2:0.197462007;GFI1:0.178455483753;STAT2,4,6:0.177050963026;FOXP3:0.171195921826;NR6A1:0.154836489536;FOXO1,3,4:0.154820918189;NKX2-1,4:0.153886750286;TFAP2{A,C}:0.14688370572;ZBTB6:0.1397368219;NFE2L2:0.136421750412;FOXP1:0.126567307769;LEF1_TCF7_TCF7L1,2:0.118928078945;SRF:0.112095707955;ZNF143:0.0726005403229;HIF1A:0.0536412430401;NFIL3:0.053012010527;IRF1,2:0.0499531125736;NRF1:0.0405768021815;RFX1:0.0345260461731;YY1:0.0200541618758;TP53:0.0148961293091;NKX2-3_NKX2-5:-0.000381201589387;TOPORS:-0.0266577072843;CDC5L:-0.0283779618423;ADNP_IRX_SIX_ZHX:-0.0417091806842;LMO2:-0.0935405763574;PAX6:-0.11168980163;STAT1,3:-0.113336496465;RXRA_VDR{dimer}:-0.125499787801;MZF1:-0.127120451376;FOS_FOS{B,L1}_JUN{B,D}:-0.142078350311;PAX8:-0.143376169584;PDX1:-0.155206895796;PAX4:-0.158444783371;HMX1:-0.159009859453;PAX3,7:-0.16261843691;TBX4,5:-0.163936136612;CEBPA,B_DDIT3:-0.174996156314;NKX6-1,2:-0.191846206456;HNF1A:-0.194251269279;PITX1..3:-0.214922607492;BACH2:-0.226509917569;NHLH1,2:-0.233140002855;FOXQ1:-0.240146814372;PATZ1:-0.25017753299;DMAP1_NCOR{1,2}_SMARC:-0.258150230444;SOX5:-0.264419653074;NFY{A,B,C}:-0.272468249142;MEF2{A,B,C,D}:-0.27437639578;RUNX1..3:-0.274812009347;ARID5B:-0.299945240913;ELF1,2,4:-0.314502070747;EP300:-0.319912847007;AR:-0.322892800981;T:-0.325586984735;MED-1{core}:-0.331009801847;PBX1:-0.354669890931;FOSL2:-0.364563210306;ZBTB16:-0.371541991453;FOX{F1,F2,J1}:-0.376848692609;REST:-0.381484113835;ATF2:-0.381870394335;SP1:-0.417122685176;ZFP161:-0.436919487012;NFKB1_REL_RELA:-0.438455978637;NFE2:-0.460570980524;CDX1,2,4:-0.469478488107;IRF7:-0.475701763875;MYFfamily:-0.479722377872;NR5A1,2:-0.494641292912;CRX:-0.496741955624;FOXM1:-0.498616757432;SOX17:-0.505305330793;CREB1:-0.534334898128;HNF4A_NR2F1,2:-0.536365073225;ATF4:-0.559913397986;SNAI1..3:-0.566575155456;JUN:-0.575213658836;DBP:-0.603879541872;IKZF2:-0.635349374308;SPI1:-0.649691617876;ETS1,2:-0.663574386673;FOXA2:-0.677585957189;BREu{core}:-0.686354069235;EGR1..3:-0.706109476466;TGIF1:-0.746944398613;ATF5_CREB3:-0.752641829027;bHLH_family:-0.773678126977;FOX{D1,D2}:-0.800626283213;SOX{8,9,10}:-0.810625945149;SPIB:-0.81158421746;ESRRA:-0.827107040032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.839095751893;SREBF1,2:-0.842836625176;POU3F1..4:-0.852129817164;SOX2:-0.87932556602;RFX2..5_RFXANK_RFXAP:-0.912761362352;ZEB1:-0.917925411019;HOXA9_MEIS1:-0.973940721482;ONECUT1,2:-0.974450837215;TLX2:-1.08968551944;PAX2:-1.09307899256;OCT4_SOX2{dimer}:-1.11049666149;ALX1:-1.15410228265;FOXN1:-1.17715798237;NFIX:-1.19490924077;GATA6:-1.20105989737;POU2F1..3:-1.25016192419;CUX2:-1.27224975585;NANOG:-1.27797311077;RORA:-1.61931783191;MYOD1:-1.64342598697 | |top_motifs=FOXL1:2.49296008799;ALX4:2.05032625912;HES1:1.87471296284;EVI1:1.72634938723;TEF:1.63569720909;NKX3-1:1.60673404067;POU1F1:1.52058688834;TFCP2:1.50270835405;ZNF384:1.43474379712;ESR1:1.40534640916;SMAD1..7,9:1.390282686;MYBL2:1.38783030181;LHX3,4:1.37225359911;UFEwm:1.22423260807;PPARG:1.19349985075;HSF1,2:1.17324570239;PRDM1:1.12668886813;EN1,2:1.08916311678;HAND1,2:1.08182023202;POU5F1:1.06442960683;KLF4:1.02067414963;TEAD1:0.919941840844;TAL1_TCF{3,4,12}:0.880422521553;MYB:0.875698664028;FOX{I1,J2}:0.833841867599;ATF6:0.818455921062;NKX2-2,8:0.803999897161;HMGA1,2:0.80276265808;GLI1..3:0.794539802112;HOX{A5,B5}:0.785522716677;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.780468260719;HOX{A4,D4}:0.755783258832;HOX{A6,A7,B6,B7}:0.733079467314;NR1H4:0.71896569757;ZNF238:0.704644904569;GCM1,2:0.702872466092;IKZF1:0.695986262344;SPZ1:0.679951645638;MAFB:0.6688710864;HBP1_HMGB_SSRP1_UBTF:0.662492216639;RXR{A,B,G}:0.627411585546;XBP1:0.612489665544;NR3C1:0.603923287665;VSX1,2:0.597076408082;MTE{core}:0.584887963368;NFATC1..3:0.562712102635;TFDP1:0.554643237328;NFE2L1:0.549792189822;ZNF423:0.540187321126;AIRE:0.520858191563;E2F1..5:0.513555816823;FOXD3:0.507100119749;PAX1,9:0.501711154367;STAT5{A,B}:0.494382636256;GTF2I:0.478518434489;GTF2A1,2:0.467249492586;TLX1..3_NFIC{dimer}:0.435828151775;XCPE1{core}:0.435659003787;NANOG{mouse}:0.421321030826;RREB1:0.420967140545;GATA4:0.419490303601;PAX5:0.4173639302;ZIC1..3:0.41466701315;GZF1:0.396645466717;MTF1:0.38102251343;GFI1B:0.378500165457;TBP:0.361609140596;POU6F1:0.3550640038;MAZ:0.327524977514;NKX3-2:0.31876553672;ZNF148:0.272861393002;TFAP2B:0.271927772984;EBF1:0.257805736386;HIC1:0.255457338564;ELK1,4_GABP{A,B1}:0.227526998357;AHR_ARNT_ARNT2:0.222584877718;RBPJ:0.222166382203;HLF:0.205986986487;TFAP4:0.205237441233;BPTF:0.199207185659;PRRX1,2:0.197462007;GFI1:0.178455483753;STAT2,4,6:0.177050963026;FOXP3:0.171195921826;NR6A1:0.154836489536;FOXO1,3,4:0.154820918189;NKX2-1,4:0.153886750286;TFAP2{A,C}:0.14688370572;ZBTB6:0.1397368219;NFE2L2:0.136421750412;FOXP1:0.126567307769;LEF1_TCF7_TCF7L1,2:0.118928078945;SRF:0.112095707955;ZNF143:0.0726005403229;HIF1A:0.0536412430401;NFIL3:0.053012010527;IRF1,2:0.0499531125736;NRF1:0.0405768021815;RFX1:0.0345260461731;YY1:0.0200541618758;TP53:0.0148961293091;NKX2-3_NKX2-5:-0.000381201589387;TOPORS:-0.0266577072843;CDC5L:-0.0283779618423;ADNP_IRX_SIX_ZHX:-0.0417091806842;LMO2:-0.0935405763574;PAX6:-0.11168980163;STAT1,3:-0.113336496465;RXRA_VDR{dimer}:-0.125499787801;MZF1:-0.127120451376;FOS_FOS{B,L1}_JUN{B,D}:-0.142078350311;PAX8:-0.143376169584;PDX1:-0.155206895796;PAX4:-0.158444783371;HMX1:-0.159009859453;PAX3,7:-0.16261843691;TBX4,5:-0.163936136612;CEBPA,B_DDIT3:-0.174996156314;NKX6-1,2:-0.191846206456;HNF1A:-0.194251269279;PITX1..3:-0.214922607492;BACH2:-0.226509917569;NHLH1,2:-0.233140002855;FOXQ1:-0.240146814372;PATZ1:-0.25017753299;DMAP1_NCOR{1,2}_SMARC:-0.258150230444;SOX5:-0.264419653074;NFY{A,B,C}:-0.272468249142;MEF2{A,B,C,D}:-0.27437639578;RUNX1..3:-0.274812009347;ARID5B:-0.299945240913;ELF1,2,4:-0.314502070747;EP300:-0.319912847007;AR:-0.322892800981;T:-0.325586984735;MED-1{core}:-0.331009801847;PBX1:-0.354669890931;FOSL2:-0.364563210306;ZBTB16:-0.371541991453;FOX{F1,F2,J1}:-0.376848692609;REST:-0.381484113835;ATF2:-0.381870394335;SP1:-0.417122685176;ZFP161:-0.436919487012;NFKB1_REL_RELA:-0.438455978637;NFE2:-0.460570980524;CDX1,2,4:-0.469478488107;IRF7:-0.475701763875;MYFfamily:-0.479722377872;NR5A1,2:-0.494641292912;CRX:-0.496741955624;FOXM1:-0.498616757432;SOX17:-0.505305330793;CREB1:-0.534334898128;HNF4A_NR2F1,2:-0.536365073225;ATF4:-0.559913397986;SNAI1..3:-0.566575155456;JUN:-0.575213658836;DBP:-0.603879541872;IKZF2:-0.635349374308;SPI1:-0.649691617876;ETS1,2:-0.663574386673;FOXA2:-0.677585957189;BREu{core}:-0.686354069235;EGR1..3:-0.706109476466;TGIF1:-0.746944398613;ATF5_CREB3:-0.752641829027;bHLH_family:-0.773678126977;FOX{D1,D2}:-0.800626283213;SOX{8,9,10}:-0.810625945149;SPIB:-0.81158421746;ESRRA:-0.827107040032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.839095751893;SREBF1,2:-0.842836625176;POU3F1..4:-0.852129817164;SOX2:-0.87932556602;RFX2..5_RFXANK_RFXAP:-0.912761362352;ZEB1:-0.917925411019;HOXA9_MEIS1:-0.973940721482;ONECUT1,2:-0.974450837215;TLX2:-1.08968551944;PAX2:-1.09307899256;OCT4_SOX2{dimer}:-1.11049666149;ALX1:-1.15410228265;FOXN1:-1.17715798237;NFIX:-1.19490924077;GATA6:-1.20105989737;POU2F1..3:-1.25016192419;CUX2:-1.27224975585;NANOG:-1.27797311077;RORA:-1.61931783191;MYOD1:-1.64342598697 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11261-116G1;search_select_hide=table117:FF:11261-116G1 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Chondrocyte - de diff, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11923 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11923
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11923
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.618 |
| 10 | 10 | 0.0932 |
| 100 | 100 | 0.149 |
| 101 | 101 | 0.403 |
| 102 | 102 | 0.267 |
| 103 | 103 | 0.434 |
| 104 | 104 | 0.456 |
| 105 | 105 | 0.249 |
| 106 | 106 | 0.0467 |
| 107 | 107 | 0.302 |
| 108 | 108 | 0.586 |
| 109 | 109 | 0.449 |
| 11 | 11 | 0.444 |
| 110 | 110 | 0.258 |
| 111 | 111 | 0.766 |
| 112 | 112 | 0.834 |
| 113 | 113 | 0.00573 |
| 114 | 114 | 0.477 |
| 115 | 115 | 0.00589 |
| 116 | 116 | 0.0268 |
| 117 | 117 | 0.359 |
| 118 | 118 | 0.772 |
| 119 | 119 | 0.484 |
| 12 | 12 | 0.0654 |
| 120 | 120 | 0.748 |
| 121 | 121 | 0.388 |
| 122 | 122 | 0.0434 |
| 123 | 123 | 0.0216 |
| 124 | 124 | 0.242 |
| 125 | 125 | 0.342 |
| 126 | 126 | 0.58 |
| 127 | 127 | 0.91 |
| 128 | 128 | 0.571 |
| 129 | 129 | 0.641 |
| 13 | 13 | 0.0709 |
| 130 | 130 | 0.678 |
| 131 | 131 | 0.625 |
| 132 | 132 | 0.0358 |
| 133 | 133 | 0.361 |
| 134 | 134 | 0.443 |
| 135 | 135 | 0.967 |
| 136 | 136 | 0.689 |
| 137 | 137 | 0.467 |
| 138 | 138 | 0.178 |
| 139 | 139 | 0.406 |
| 14 | 14 | 0.198 |
| 140 | 140 | 0.12 |
| 141 | 141 | 0.115 |
| 142 | 142 | 0.663 |
| 143 | 143 | 0.211 |
| 144 | 144 | 0.561 |
| 145 | 145 | 0.445 |
| 146 | 146 | 0.0537 |
| 147 | 147 | 0.199 |
| 148 | 148 | 0.642 |
| 149 | 149 | 0.0191 |
| 15 | 15 | 0.368 |
| 150 | 150 | 0.313 |
| 151 | 151 | 0.373 |
| 152 | 152 | 0.13 |
| 153 | 153 | 0.567 |
| 154 | 154 | 0.247 |
| 155 | 155 | 0.486 |
| 156 | 156 | 0.376 |
| 157 | 157 | 0.304 |
| 158 | 158 | 0.00694 |
| 159 | 159 | 0.37 |
| 16 | 16 | 0.109 |
| 160 | 160 | 0.914 |
| 161 | 161 | 0.969 |
| 162 | 162 | 0.974 |
| 163 | 163 | 0.267 |
| 164 | 164 | 0.123 |
| 165 | 165 | 0.604 |
| 166 | 166 | 0.00171 |
| 167 | 167 | 0.634 |
| 168 | 168 | 0.834 |
| 169 | 169 | 0.00818 |
| 17 | 17 | 0.658 |
| 18 | 18 | 0.828 |
| 19 | 19 | 0.00213 |
| 2 | 2 | 0.697 |
| 20 | 20 | 0.891 |
| 21 | 21 | 0.00569 |
| 22 | 22 | 0.214 |
| 23 | 23 | 0.279 |
| 24 | 24 | 0.15 |
| 25 | 25 | 0.595 |
| 26 | 26 | 0.887 |
| 27 | 27 | 0.709 |
| 28 | 28 | 0.377 |
| 29 | 29 | 0.16 |
| 3 | 3 | 0.997 |
| 30 | 30 | 0.516 |
| 31 | 31 | 0.771 |
| 32 | 32 | 1.01914e-12 |
| 33 | 33 | 0.972 |
| 34 | 34 | 0.984 |
| 35 | 35 | 0.121 |
| 36 | 36 | 0.307 |
| 37 | 37 | 0.565 |
| 38 | 38 | 0.982 |
| 39 | 39 | 0.259 |
| 4 | 4 | 0.332 |
| 40 | 40 | 0.759 |
| 41 | 41 | 0.116 |
| 42 | 42 | 0.545 |
| 43 | 43 | 0.694 |
| 44 | 44 | 0.353 |
| 45 | 45 | 0.456 |
| 46 | 46 | 0.726 |
| 47 | 47 | 0.408 |
| 48 | 48 | 0.766 |
| 49 | 49 | 0.575 |
| 5 | 5 | 0.752 |
| 50 | 50 | 0.441 |
| 51 | 51 | 0.916 |
| 52 | 52 | 0.302 |
| 53 | 53 | 0.347 |
| 54 | 54 | 0.973 |
| 55 | 55 | 0.843 |
| 56 | 56 | 0.557 |
| 57 | 57 | 0.526 |
| 58 | 58 | 0.557 |
| 59 | 59 | 0.144 |
| 6 | 6 | 0.36 |
| 60 | 60 | 0.582 |
| 61 | 61 | 0.64 |
| 62 | 62 | 0.86 |
| 63 | 63 | 0.289 |
| 64 | 64 | 0.888 |
| 65 | 65 | 0.357 |
| 66 | 66 | 0.552 |
| 67 | 67 | 0.542 |
| 68 | 68 | 0.923 |
| 69 | 69 | 0.224 |
| 7 | 7 | 0.35 |
| 70 | 70 | 0.966 |
| 71 | 71 | 0.35 |
| 72 | 72 | 0.208 |
| 73 | 73 | 0.059 |
| 74 | 74 | 0.115 |
| 75 | 75 | 0.783 |
| 76 | 76 | 0.466 |
| 77 | 77 | 0.00222 |
| 78 | 78 | 0.039 |
| 79 | 79 | 0.0145 |
| 8 | 8 | 0.183 |
| 80 | 80 | 0.14 |
| 81 | 81 | 0.99 |
| 82 | 82 | 0.886 |
| 83 | 83 | 0.534 |
| 84 | 84 | 0.333 |
| 85 | 85 | 0.603 |
| 86 | 86 | 0.949 |
| 87 | 87 | 0.589 |
| 88 | 88 | 0.393 |
| 89 | 89 | 0.328 |
| 9 | 9 | 0.6 |
| 90 | 90 | 0.447 |
| 91 | 91 | 0.362 |
| 92 | 92 | 0.562 |
| 93 | 93 | 0.89 |
| 94 | 94 | 0.574 |
| 95 | 95 | 0.831 |
| 96 | 96 | 0.871 |
| 97 | 97 | 0.563 |
| 98 | 98 | 0.781 |
| 99 | 99 | 0.117 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11923
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000246 human chondrocyte de-differentiated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000246 (human chondrocyte de-differentiated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
