FF:11272-116H3: Difference between revisions

Latest revision as of 16:29, 3 June 2020

Name:	Keratinocyte - epidermal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11064
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	54 years old adult
sex	male
age	54
cell type	keratinocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1327
catalog number	CA102-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005531

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11064		CAGE		DRX008312		DRR009184

Accession ID Hg19

Library id		BAM		CTSS
CNhs11064		DRZ000609		DRZ001994

Accession ID Hg38

Library id		BAM		CTSS
CNhs11064		DRZ011959		DRZ013344

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005531

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.GCCAAT		sRNA-Seq		DRX037015		DRR041381

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.GCCAAT		DRZ007023

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0895
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.181
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.35
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0359
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.132
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0961
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0356
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.944
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.112
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.331
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.331
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0444
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0452
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0161
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.547
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.232
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.19
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.158
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.344
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11064

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.933
MA0003.1	MA0003.1	0.708
MA0004.1	MA0004.1	0.52
MA0006.1	MA0006.1	0.0427
MA0007.1	MA0007.1	0.744
MA0009.1	MA0009.1	0.0243
MA0014.1	MA0014.1	0.291
MA0017.1	MA0017.1	0.794
MA0018.2	MA0018.2	5.72441e-4
MA0019.1	MA0019.1	0.381
MA0024.1	MA0024.1	1.42887e-6
MA0025.1	MA0025.1	0.383
MA0027.1	MA0027.1	0.555
MA0028.1	MA0028.1	0.626
MA0029.1	MA0029.1	0.189
MA0030.1	MA0030.1	0.162
MA0031.1	MA0031.1	0.0317
MA0035.2	MA0035.2	0.431
MA0038.1	MA0038.1	0.102
MA0039.2	MA0039.2	0.00247
MA0040.1	MA0040.1	0.433
MA0041.1	MA0041.1	0.497
MA0042.1	MA0042.1	0.663
MA0043.1	MA0043.1	0.0208
MA0046.1	MA0046.1	0.753
MA0047.2	MA0047.2	0.842
MA0048.1	MA0048.1	0.776
MA0050.1	MA0050.1	1.99341e-8
MA0051.1	MA0051.1	1.25826e-5
MA0052.1	MA0052.1	0.0375
MA0055.1	MA0055.1	0.535
MA0057.1	MA0057.1	0.0127
MA0058.1	MA0058.1	0.269
MA0059.1	MA0059.1	0.562
MA0060.1	MA0060.1	0.0477
MA0061.1	MA0061.1	0.544
MA0062.2	MA0062.2	0.126
MA0065.2	MA0065.2	0.144
MA0066.1	MA0066.1	0.368
MA0067.1	MA0067.1	0.00186
MA0068.1	MA0068.1	0.0127
MA0069.1	MA0069.1	0.16
MA0070.1	MA0070.1	0.748
MA0071.1	MA0071.1	0.148
MA0072.1	MA0072.1	0.748
MA0073.1	MA0073.1	0.848
MA0074.1	MA0074.1	0.777
MA0076.1	MA0076.1	0.314
MA0077.1	MA0077.1	0.191
MA0078.1	MA0078.1	0.701
MA0079.2	MA0079.2	0.188
MA0080.2	MA0080.2	8.34245e-7
MA0081.1	MA0081.1	0.0222
MA0083.1	MA0083.1	0.0108
MA0084.1	MA0084.1	0.109
MA0087.1	MA0087.1	0.97
MA0088.1	MA0088.1	0.447
MA0090.1	MA0090.1	3.96739e-4
MA0091.1	MA0091.1	0.486
MA0092.1	MA0092.1	0.869
MA0093.1	MA0093.1	0.437
MA0099.2	MA0099.2	1.12484e-5
MA0100.1	MA0100.1	0.103
MA0101.1	MA0101.1	0.2
MA0102.2	MA0102.2	0.00321
MA0103.1	MA0103.1	2.59665e-6
MA0104.2	MA0104.2	0.703
MA0105.1	MA0105.1	0.95
MA0106.1	MA0106.1	7.90293e-11
MA0107.1	MA0107.1	0.18
MA0108.2	MA0108.2	0.483
MA0111.1	MA0111.1	0.854
MA0112.2	MA0112.2	0.154
MA0113.1	MA0113.1	0.845
MA0114.1	MA0114.1	0.592
MA0115.1	MA0115.1	0.764
MA0116.1	MA0116.1	0.158
MA0117.1	MA0117.1	0.386
MA0119.1	MA0119.1	0.37
MA0122.1	MA0122.1	0.562
MA0124.1	MA0124.1	0.964
MA0125.1	MA0125.1	0.0764
MA0131.1	MA0131.1	0.184
MA0135.1	MA0135.1	0.584
MA0136.1	MA0136.1	4.38173e-4
MA0137.2	MA0137.2	0.0246
MA0138.2	MA0138.2	0.562
MA0139.1	MA0139.1	0.546
MA0140.1	MA0140.1	0.535
MA0141.1	MA0141.1	0.481
MA0142.1	MA0142.1	0.358
MA0143.1	MA0143.1	0.282
MA0144.1	MA0144.1	0.842
MA0145.1	MA0145.1	0.0146
MA0146.1	MA0146.1	0.201
MA0147.1	MA0147.1	0.97
MA0148.1	MA0148.1	0.563
MA0149.1	MA0149.1	0.162
MA0150.1	MA0150.1	0.813
MA0152.1	MA0152.1	0.383
MA0153.1	MA0153.1	0.51
MA0154.1	MA0154.1	0.198
MA0155.1	MA0155.1	0.875
MA0156.1	MA0156.1	0.0103
MA0157.1	MA0157.1	0.0714
MA0159.1	MA0159.1	0.506
MA0160.1	MA0160.1	0.339
MA0162.1	MA0162.1	0.101
MA0163.1	MA0163.1	0.916
MA0164.1	MA0164.1	0.396
MA0258.1	MA0258.1	0.971
MA0259.1	MA0259.1	0.788

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11064

Novel motif	Logo	P-value
1	1	0.828
10	10	0.206
100	100	0.867
101	101	0.308
102	102	0.27
103	103	0.0573
104	104	0.916
105	105	0.208
106	106	0.0492
107	107	0.0479
108	108	0.204
109	109	0.0137
11	11	0.474
110	110	0.383
111	111	0.617
112	112	0.163
113	113	0.275
114	114	0.341
115	115	0.224
116	116	0.969
117	117	0.371
118	118	0.954
119	119	0.455
12	12	0.652
120	120	0.079
121	121	0.953
122	122	0.203
123	123	0.114
124	124	0.0952
125	125	0.838
126	126	0.31
127	127	0.139
128	128	0.341
129	129	0.0858
13	13	0.141
130	130	0.861
131	131	0.763
132	132	0.302
133	133	0.00839
134	134	0.167
135	135	0.988
136	136	0.0946
137	137	0.191
138	138	0.538
139	139	0.606
14	14	0.752
140	140	0.749
141	141	0.686
142	142	0.395
143	143	0.856
144	144	0.232
145	145	0.121
146	146	0.0895
147	147	0.0823
148	148	0.721
149	149	0.452
15	15	0.807
150	150	0.248
151	151	0.234
152	152	0.0142
153	153	0.57
154	154	0.897
155	155	0.986
156	156	0.811
157	157	0.671
158	158	0.0383
159	159	0.46
16	16	0.0308
160	160	0.281
161	161	0.344
162	162	0.512
163	163	0.685
164	164	0.849
165	165	0.772
166	166	0.321
167	167	0.0973
168	168	0.123
169	169	0.0457
17	17	0.256
18	18	0.144
19	19	0.953
2	2	0.0983
20	20	0.803
21	21	0.754
22	22	0.417
23	23	0.406
24	24	0.00718
25	25	0.753
26	26	0.516
27	27	0.437
28	28	0.755
29	29	0.62
3	3	0.505
30	30	0.0557
31	31	0.716
32	32	0.866
33	33	0.396
34	34	0.899
35	35	0.356
36	36	0.0839
37	37	0.25
38	38	0.62
39	39	0.102
4	4	0.892
40	40	0.0641
41	41	0.413
42	42	0.84
43	43	0.626
44	44	0.137
45	45	0.0765
46	46	0.683
47	47	0.543
48	48	0.187
49	49	0.703
5	5	0.967
50	50	0.478
51	51	0.686
52	52	0.181
53	53	0.513
54	54	0.479
55	55	0.251
56	56	0.394
57	57	0.577
58	58	0.988
59	59	0.151
6	6	0.157
60	60	0.347
61	61	0.903
62	62	0.787
63	63	0.202
64	64	0.826
65	65	0.707
66	66	0.583
67	67	0.924
68	68	0.24
69	69	0.0627
7	7	0.503
70	70	0.0541
71	71	0.482
72	72	0.563
73	73	0.00825
74	74	0.0504
75	75	0.431
76	76	0.38
77	77	0.00403
78	78	0.0718
79	79	0.651
8	8	0.349
80	80	0.873
81	81	0.793
82	82	0.427
83	83	0.96
84	84	0.618
85	85	0.51
86	86	0.908
87	87	0.0198
88	88	0.868
89	89	0.00568
9	9	0.965
90	90	0.596
91	91	0.571
92	92	0.484
93	93	0.964
94	94	0.744
95	95	0.087
96	96	0.987
97	97	0.799
98	98	0.758
99	99	0.0023

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11064

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000082 human epidermal keratinocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005531
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005531
+|accession_numbers=CAGE;DRX008312;DRR009184;DRZ000609;DRZ001994;DRZ011959;DRZ013344
+|accession_numbers_RNASeq=sRNA-Seq;DRX037015;DRR041381;DRZ007023
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.51!325.19!SOX15;;chr1:209979411..209979433,-!p2@IRF6!2.48!301.92!IRF6;;chr1:209979467..209979494,-!p1@IRF6!2.37!262.74!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.21!162.10!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.92!99.10!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.91!80.56!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.90!78.14!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.87!82.75!ZNF385A;;chr15:83953397..83953425,-!p1@BNC1!1.84!77.26!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.77!87.80!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.73!86.81!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.75!CERS3;;chr11:34642612..34642646,+!p1@EHF!1.58!37.42!EHF;;chr1:209979375..209979386,-!p4@IRF6!1.57!35.78!IRF6;;chr5:2751762..2751784,-!p1@IRX2!1.53!33.03!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.52!66.95!SOX15;;chr2:122042770..122042785,-!p1@TFCP2L1!1.48!29.19!TFCP2L1;;chr17:80797886..80797906,-!p1@ZNF750!1.43!26.01!ZNF750;;chr6:10415484..10415508,-!p3@TFAP2A!1.42!25.35!TFAP2A;;chr17:70117153..70117174,+!p1@SOX9!1.33!205.45!SOX9;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.34!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.23!15.80!ZBED2;;chr8:49833948..49833973,-!p2@SNAI2!1.22!98.23!SNAI2;;chr5:2751785..2751808,-!p2@IRX2!1.20!14.71!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.19!126.87!PPP1R13L;;chr8:128747661..128747703,+!p6@MYC!1.18!18.88!MYC;;chr1:24645921..24645973,+!p2@GRHL3!1.16!13.50!GRHL3;;chr8:128748308..128748324,+!p2@MYC!1.14!348.57!MYC;;chr13:73633131..73633149,+!p1@KLF5!1.14!134.66!KLF5;;chr6:10419768..10419819,-!p6@TFAP2A!1.13!12.51!TFAP2A;;chr12:66218255..66218304,+!p3@HMGA2!1.12!33.14!HMGA2;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.74!GRHL2;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.28!RUNX1;;chr2:46524897..46524911,+!p2@EPAS1!1.09!31.94!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.06!10.43!GRHL3;;chr22:19748231..19748317,+!p1@TBX1!1.05!10.21!TBX1;;chr4:57547454..57547469,-!p1@HOPX!1.05!10.21!HOPX;;chr12:54332608..54332636,+!p1@HOXC13!1.05!10.10!HOXC13;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.86!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!1.03!9.66!OTX1;;chr5:1887052..1887065,-!p2@IRX4!1.00!9.00!IRX4;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.00!TFAP2A;;chr15:83953373..83953386,-!p2@BNC1!0.99!8.78!BNC1;;chr9:126774018..126774055,+!p1@LHX2!0.98!8.45!LHX2;;chr8:49833978..49833996,-!p1@SNAI2!0.97!177.03!SNAI2;;chr16:67881588..67881612,-!p2@CENPT!0.97!11.63!CENPT;;chr12:48298765..48298783,-!p2@VDR!0.96!17.23!VDR;;chr16:54320101..54320125,-!p4@IRX3!0.95!11.30!IRX3;;chr1:151032860..151032918,+!p1@MLLT11!0.94!94.49!MLLT11;;chr1:24646263..24646277,+!p4@GRHL3!0.93!7.57!GRHL3;;chr10:64134120..64134183,+!p1@ZNF365!0.92!9.00!ZNF365;;chr17:41623259..41623278,-!p7@ETV4!0.91!8.45!ETV4;;chr1:209979449..209979460,-!p3@IRF6!0.90!7.02!IRF6;;chr8:128747709..128747723,+!p20@MYC!0.90!6.91!MYC;;chr12:66218836..66218888,+!p1@HMGA2!0.89!67.06!HMGA2;;chr7:27135591..27135658,-!p1@HOXA1!0.89!13.50!HOXA1;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.78!TFAP2C;;chr10:8096772..8096787,+!p2@GATA3!0.89!8.12!GATA3;;chr8:128747757..128747800,+!p7@MYC!0.87!8.89!MYC;;chr17:7492979..7492991,-!p5@SOX15!0.87!6.48!SOX15;;chr2:208030647..208030689,-!p1@KLF7!0.86!55.09!KLF7;;chr10:8095593..8095625,+!p3@GATA3!0.86!7.35!GATA3;;chr14:21566731..21566836,-!p1@ZNF219!0.85!69.14!ZNF219;;chr14:74256787..74256858,-!p6@C14orf43!0.85!6.15!C14orf43;;chr5:1887070..1887114,-!p1@IRX4!0.85!6.04!IRX4;;chr16:31076332..31076388,-!p3@ZNF668!0.85!6.04!ZNF668;;chr1:158979792..158979814,+!p2@IFI16!0.83!58.72!IFI16;;chr17:41623692..41623715,-!p1@ETV4!0.83!26.23!ETV4;;chr17:7492504..7492520,-!p3@SOX15!0.83!5.82!SOX15;;chr10:126138597..126138612,-!p1@NKX1-2!0.83!5.82!NKX1-2;;chr5:3595977..3595999,+!p1@IRX1!0.83!5.71!IRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.22!FOXD1;;chr6:10415263..10415274,-!p8@TFAP2A!0.82!5.60!TFAP2A;;chr19:42636586..42636607,-!p1@POU2F2!0.81!16.02!POU2F2;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.01!ZNF860;;chr3:189507460..189507471,+!p3@TP63!0.80!5.38!TP63;;chr2:101436564..101436647,+!p1@NPAS2!0.79!113.92!NPAS2;;chr1:151032782..151032801,+!p4@MLLT11!0.79!10.87!MLLT11;;chr1:151032739..151032748,+!p6@MLLT11!0.79!6.59!MLLT11;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr11:65554528..65554546,+!p1@OVOL1!0.79!5.16!OVOL1;;chr1:151032922..151032951,+!p2@MLLT11!0.77!8.56!MLLT11;;chr1:10856665..10856683,-!p4@CASZ1!0.77!4.83!CASZ1;;chr12:48298785..48298828,-!p1@VDR!0.76!27.88!VDR;;chr12:125002739..125002756,-!p6@NCOR2!0.76!7.24!NCOR2;;chr5:3595934..3595957,+!p2@IRX1!0.76!4.72!IRX1;;chr17:45928443..45928473,-!p2@SP6!0.76!4.72!SP6;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.44!HMGA2;;chr6:10419824..10419840,-!p9@TFAP2A!0.75!4.61!TFAP2A;;chr9:129376201..129376225,+!p1@LMX1B!0.75!4.61!LMX1B;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.83!ELF1;;chr17:41623009..41623053,-!p4@ETV4!0.74!7.57!ETV4;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.50!HOXC9;;chr17:46132044..46132080,+!p4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11272-116H3
 |is_a=EFO:0002091;;FF:0000082
 |is_obsolete=
+|library_id=CNhs11064
+|library_id_phase_based=2:CNhs11064
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11272
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GCCAAT.11272
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11272
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GCCAAT.11272
 |name=Keratinocyte - epidermal, donor1
 |namespace=FANTOM5
@@ Line 45: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11064,LSID723,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10003,,,
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 |rna_box=116
 |rna_catalog_number=CA102-R10a
@@ Line 59: / Line 82: @@
 |rna_tube_id=116H3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10003.GCCAAT
 |sample_age=54
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 81: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11272-116H3;search_select_hide=table117:FF:11272-116H3
 }}

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FF:11272-116H3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:29, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0