FF:11274-116H5: Difference between revisions

Latest revision as of 16:30, 3 June 2020

Name:	Melanocyte - light, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11303
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	infant
sex	male
age	Neonatal
cell type	melanocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1097
catalog number	CA104-R10n
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005723

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11303		CAGE		DRX008338		DRR009210

Accession ID Hg19

Library id		BAM		CTSS
CNhs11303		DRZ000635		DRZ002020

Accession ID Hg38

Library id		BAM		CTSS
CNhs11303		DRZ011985		DRZ013370

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005723

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10010.GCCAAT		sRNA-Seq		DRX037149		DRR041515

Accession ID Hg19

Library id		BAM		CTSS
SRhi10010.GCCAAT		DRZ007157

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0429
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.332
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.302
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.307
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0276
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0734
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.232
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0521
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.565
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.875
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11303

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.882
MA0003.1	MA0003.1	0.43
MA0004.1	MA0004.1	6.38786e-6
MA0006.1	MA0006.1	0.727
MA0007.1	MA0007.1	0.242
MA0009.1	MA0009.1	0.238
MA0014.1	MA0014.1	0.261
MA0017.1	MA0017.1	0.82
MA0018.2	MA0018.2	0.0788
MA0019.1	MA0019.1	0.0434
MA0024.1	MA0024.1	0.284
MA0025.1	MA0025.1	0.686
MA0027.1	MA0027.1	0.42
MA0028.1	MA0028.1	0.38
MA0029.1	MA0029.1	0.75
MA0030.1	MA0030.1	0.542
MA0031.1	MA0031.1	0.813
MA0035.2	MA0035.2	0.191
MA0038.1	MA0038.1	0.0414
MA0039.2	MA0039.2	0.0109
MA0040.1	MA0040.1	0.911
MA0041.1	MA0041.1	0.288
MA0042.1	MA0042.1	0.939
MA0043.1	MA0043.1	0.422
MA0046.1	MA0046.1	0.744
MA0047.2	MA0047.2	0.66
MA0048.1	MA0048.1	0.532
MA0050.1	MA0050.1	0.421
MA0051.1	MA0051.1	0.616
MA0052.1	MA0052.1	0.0142
MA0055.1	MA0055.1	0.00634
MA0057.1	MA0057.1	0.339
MA0058.1	MA0058.1	8.80678e-9
MA0059.1	MA0059.1	0.00683
MA0060.1	MA0060.1	1.40372e-7
MA0061.1	MA0061.1	2.03187e-4
MA0062.2	MA0062.2	0.0112
MA0065.2	MA0065.2	0.428
MA0066.1	MA0066.1	0.802
MA0067.1	MA0067.1	0.00356
MA0068.1	MA0068.1	0.54
MA0069.1	MA0069.1	0.43
MA0070.1	MA0070.1	6.99089e-5
MA0071.1	MA0071.1	0.773
MA0072.1	MA0072.1	0.75
MA0073.1	MA0073.1	0.999
MA0074.1	MA0074.1	0.302
MA0076.1	MA0076.1	0.283
MA0077.1	MA0077.1	0.618
MA0078.1	MA0078.1	0.871
MA0079.2	MA0079.2	0.0527
MA0080.2	MA0080.2	0.0121
MA0081.1	MA0081.1	0.973
MA0083.1	MA0083.1	0.135
MA0084.1	MA0084.1	0.447
MA0087.1	MA0087.1	0.416
MA0088.1	MA0088.1	0.398
MA0090.1	MA0090.1	0.45
MA0091.1	MA0091.1	0.34
MA0092.1	MA0092.1	0.221
MA0093.1	MA0093.1	6.71341e-6
MA0099.2	MA0099.2	0.983
MA0100.1	MA0100.1	0.63
MA0101.1	MA0101.1	0.00641
MA0102.2	MA0102.2	7.70206e-4
MA0103.1	MA0103.1	0.0493
MA0104.2	MA0104.2	0.00569
MA0105.1	MA0105.1	4.32971e-5
MA0106.1	MA0106.1	0.344
MA0107.1	MA0107.1	0.00317
MA0108.2	MA0108.2	0.534
MA0111.1	MA0111.1	0.465
MA0112.2	MA0112.2	0.117
MA0113.1	MA0113.1	0.861
MA0114.1	MA0114.1	0.347
MA0115.1	MA0115.1	0.76
MA0116.1	MA0116.1	0.00147
MA0117.1	MA0117.1	0.0542
MA0119.1	MA0119.1	0.25
MA0122.1	MA0122.1	0.958
MA0124.1	MA0124.1	0.316
MA0125.1	MA0125.1	0.0307
MA0131.1	MA0131.1	0.839
MA0135.1	MA0135.1	0.0371
MA0136.1	MA0136.1	0.0308
MA0137.2	MA0137.2	0.203
MA0138.2	MA0138.2	0.717
MA0139.1	MA0139.1	0.866
MA0140.1	MA0140.1	0.574
MA0141.1	MA0141.1	0.0691
MA0142.1	MA0142.1	0.6
MA0143.1	MA0143.1	0.443
MA0144.1	MA0144.1	0.455
MA0145.1	MA0145.1	0.559
MA0146.1	MA0146.1	0.0201
MA0147.1	MA0147.1	0.0315
MA0148.1	MA0148.1	0.578
MA0149.1	MA0149.1	0.324
MA0150.1	MA0150.1	0.231
MA0152.1	MA0152.1	0.252
MA0153.1	MA0153.1	0.725
MA0154.1	MA0154.1	0.0743
MA0155.1	MA0155.1	0.503
MA0156.1	MA0156.1	0.448
MA0157.1	MA0157.1	0.852
MA0159.1	MA0159.1	0.531
MA0160.1	MA0160.1	0.0821
MA0162.1	MA0162.1	0.821
MA0163.1	MA0163.1	0.0696
MA0164.1	MA0164.1	0.967
MA0258.1	MA0258.1	0.867
MA0259.1	MA0259.1	0.102

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11303

Novel motif	Logo	P-value
1	1	0.339
10	10	0.0248
100	100	0.601
101	101	0.112
102	102	0.131
103	103	0.901
104	104	0.272
105	105	0.943
106	106	0.465
107	107	0.0779
108	108	0.772
109	109	0.303
11	11	0.528
110	110	0.152
111	111	0.0895
112	112	0.618
113	113	0.0106
114	114	0.164
115	115	0.859
116	116	0.0859
117	117	0.876
118	118	0.666
119	119	0.292
12	12	0.553
120	120	0.91
121	121	0.699
122	122	0.265
123	123	0.273
124	124	0.613
125	125	0.155
126	126	0.336
127	127	0.58
128	128	0.728
129	129	0.561
13	13	0.907
130	130	0.21
131	131	0.134
132	132	0.448
133	133	0.869
134	134	0.865
135	135	0.912
136	136	0.0253
137	137	0.679
138	138	0.922
139	139	0.00152
14	14	0.967
140	140	0.45
141	141	0.342
142	142	0.809
143	143	0.933
144	144	0.815
145	145	0.989
146	146	0.0244
147	147	0.866
148	148	0.003
149	149	0.977
15	15	0.77
150	150	0.53
151	151	0.68
152	152	0.125
153	153	0.115
154	154	0.0693
155	155	0.685
156	156	0.915
157	157	0.536
158	158	0.369
159	159	0.553
16	16	0.88
160	160	0.253
161	161	0.355
162	162	0.15
163	163	0.516
164	164	0.216
165	165	0.2
166	166	0.353
167	167	0.116
168	168	0.448
169	169	0.566
17	17	0.769
18	18	0.638
19	19	0.632
2	2	0.512
20	20	0.402
21	21	0.49
22	22	0.204
23	23	0.224
24	24	0.814
25	25	0.109
26	26	0.696
27	27	0.77
28	28	0.567
29	29	0.465
3	3	0.347
30	30	0.613
31	31	0.613
32	32	0.0069
33	33	0.923
34	34	0.522
35	35	0.0468
36	36	0.431
37	37	0.993
38	38	0.955
39	39	0.952
4	4	0.881
40	40	0.174
41	41	0.652
42	42	0.0974
43	43	0.26
44	44	0.711
45	45	0.784
46	46	0.646
47	47	0.498
48	48	0.428
49	49	0.193
5	5	0.325
50	50	0.405
51	51	0.849
52	52	0.432
53	53	0.115
54	54	0.653
55	55	0.13
56	56	0.768
57	57	0.821
58	58	0.00808
59	59	0.837
6	6	0.858
60	60	0.235
61	61	0.523
62	62	3.51316e-4
63	63	0.878
64	64	0.918
65	65	0.641
66	66	0.0707
67	67	0.722
68	68	0.348
69	69	0.452
7	7	0.196
70	70	0.176
71	71	0.125
72	72	0.554
73	73	0.02
74	74	0.362
75	75	0.876
76	76	0.779
77	77	0.996
78	78	0.032
79	79	0.366
8	8	0.574
80	80	0.467
81	81	0.316
82	82	0.34
83	83	0.59
84	84	0.355
85	85	0.518
86	86	0.875
87	87	0.00337
88	88	0.869
89	89	0.813
9	9	0.879
90	90	0.0798
91	91	0.887
92	92	0.0173
93	93	0.574
94	94	0.183
95	95	0.222
96	96	0.322
97	97	0.122
98	98	0.833
99	99	0.174

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11303

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000090 human light melanocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005723
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005723
+|accession_numbers=CAGE;DRX008338;DRR009210;DRZ000635;DRZ002020;DRZ011985;DRZ013370
+|accession_numbers_RNASeq=sRNA-Seq;DRX037149;DRR041515;DRZ007157
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.88!749.84!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.25!178.77!MITF;;chr19:3574330..3574393,+!p2@HMG20B!2.15!138.66!HMG20B;;chr6:391743..391759,+!p1@IRF4!2.12!130.64!IRF4;;chr2:223163706..223163730,-!p1@PAX3!2.09!121.85!PAX3;;chr6:10415276..10415341,-!p2@TFAP2A!2.07!140.19!TFAP2A;;chr19:3574157..3574180,+!p4@HMG20B!1.98!93.97!HMG20B;;chr6:10412600..10412637,-!p1@TFAP2A!1.93!137.52!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.86!72.20!TFAP2A;;chr19:3574400..3574430,+!p6@HMG20B!1.70!49.66!HMG20B;;chr15:42749722..42749739,-!p2@ZFP106!1.68!82.13!ZFP106;;chr1:25256756..25256774,-!p1@RUNX3!1.65!80.22!RUNX3;;chr17:59477233..59477263,+!p1@TBX2!1.52!96.64!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.47!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.21!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.44!34.76!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.71!TFAP2C;;chr8:72756637..72756664,-!p3@MSC!1.39!26.36!MSC;;chr6:10412576..10412599,-!p5@TFAP2A!1.31!19.48!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.95!HOXC5;;chr5:321810..321877,+!p1@AHRR!1.24!51.57!AHRR;;chr1:63788229..63788250,+!p1@FOXD3!1.24!16.43!FOXD3;;chr17:46806067..46806097,-!p1@HOXB13!1.22!15.66!HOXB13;;chr6:10415263..10415274,-!p8@TFAP2A!1.21!15.28!TFAP2A;;chr17:46688334..46688385,-!p1@HOXB7!1.18!20.25!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!1.18!17.19!HOXC4;;chr17:46806035..46806059,-!p2@HOXB13!1.17!13.75!HOXB13;;chr2:239148671..239148686,-!p1@HES6!1.16!49.66!HES6;;chr17:8027418..8027432,-!p1@HES7!1.16!13.37!HES7;;chr13:46626764..46626775,-!p16@ZC3H13!1.16!13.37!ZC3H13;;chr8:72756267..72756296,-!p4@MSC!1.15!19.48!MSC;;chr12:52431016..52431071,+!p4@NR4A1!1.15!15.28!NR4A1;;chr12:54393880..54393962,+!p1@HOXC9!1.15!12.99!HOXC9;;chr3:69985792..69985803,+!p7@MITF!1.12!12.22!MITF;;chr6:1389789..1389821,+!p1@FOXF2!1.10!16.04!FOXF2;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.46!EN2;;chr12:52445218..52445237,+!p1@NR4A1!1.09!142.10!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.09!32.09!EGR3;;chr2:145277640..145277771,-!p1@ZEB2!1.08!148.21!ZEB2;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.10!TBX2;;chr19:3572925..3573014,+!p1@HMG20B!1.06!310.94!HMG20B;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.34!NR4A3;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.93!PKNOX2;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!9.93!ZC3H13;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.17!ALX1;;chr10:35484053..35484076,+!p1@CREM!1.00!22.92!CREM;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.68!SNAI2;;chr12:53614115..53614154,-!p1@RARG!0.99!48.51!RARG;;chr8:72756063..72756125,-!p1@MSC!0.99!17.95!MSC;;chr3:185826855..185826911,-!p1@ETV5!0.98!238.74!ETV5;;chr9:102584128..102584144,+!p3@NR4A3!0.98!16.81!NR4A3;;chr9:102584278..102584285,+!p5@NR4A3!0.96!8.02!NR4A3;;chr19:3574468..3574478,+!p19@HMG20B!0.96!8.02!HMG20B;;chr6:34204973..34204990,+!p4@HMGA1!0.95!109.25!HMGA1;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.64!HOXD8;;chr8:128748308..128748324,+!p2@MYC!0.93!218.12!MYC;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.82!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.84!MSC;;chr9:102584241..102584261,+!p4@NR4A3!0.93!11.84!NR4A3;;chr19:18391615..18391637,-!p5@JUND!0.93!9.93!JUND;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.99!ZEB2;;chr2:5832508..5832524,+!p1@SOX11!0.92!7.26!SOX11;;chr12:85674018..85674039,+!p3@ALX1!0.92!7.26!ALX1;;chr17:46682321..46682362,-!p1@HOXB6!0.90!6.88!HOXB6;;chr13:46626824..46626835,-!p8@ZC3H13!0.89!8.79!ZC3H13;;chr19:3572758..3572795,+!p7@HMG20B!0.87!6.49!HMG20B;;chr4:109089095..109089144,-!p6@LEF1!0.87!6.49!LEF1;;chr6:10412477..10412490,-!p10@TFAP2A!0.87!6.49!TFAP2A;;chr22:38597987..38598021,+!p2@MAFF!0.86!40.87!MAFF;;chr1:935398..935465,-!p2@HES4!0.86!13.37!HES4;;chr11:125034605..125034636,+!p2@PKNOX2!0.85!6.11!PKNOX2;;chr4:109088940..109089037,-!p4@LEF1!0.85!6.11!LEF1;;chr19:35759824..35759891,+!p1@USF2!0.84!194.43!USF2;;chr11:65667846..65667868,-!p1@FOSL1!0.84!168.46!FOSL1;;chr17:41623692..41623715,-!p1@ETV4!0.84!26.74!ETV4;;chr19:3572689..3572697,+!p22@HMG20B!0.83!5.73!HMG20B;;chr12:54394309..54394336,+!p2@HOXC9!0.83!5.73!HOXC9;;chrY:21906594..21906622,-!p1@KDM5D!0.83!5.73!KDM5D;;chr9:16728327..16728338,-!p5@BNC2!0.83!5.73!BNC2;;chr16:79634624..79634642,-!p1@MAF!0.82!23.68!MAF;;chr13:41635029..41635044,-!p4@ELF1!0.82!12.61!ELF1;;chr20:32274179..32274213,-!p1@E2F1!0.81!39.34!E2F1;;chr20:50179368..50179392,-!p2@NFATC2!0.81!7.26!NFATC2;;chr5:88178983..88179012,-!p1@MEF2C!0.80!44.31!MEF2C;;chr11:64764435..64764449,-!p1@BATF2!0.80!7.64!BATF2;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.35!HOXC10;;chr16:67198683..67198698,+!p2@HSF4!0.80!5.35!HSF4;;chr1:204042233..204042249,+!p1@SOX13!0.79!35.14!SOX13;;chr19:3573282..3573289,+!p5@HMG20B!0.78!6.49!HMG20B;;chr17:46806016..46806029,-!p5@HOXB13!0.78!4.97!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.78!4.97!HOXB13;;chr1:25256439..25256476,-!p3@RUNX3!0.78!4.97!RUNX3;;chr8:72755987..72756002,-!p7@MSC!0.78!4.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002567
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11274-116H5
 |is_a=EFO:0002091;;FF:0000090
 |is_obsolete=
+|library_id=CNhs11303
+|library_id_phase_based=2:CNhs11303
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11274
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GCCAAT.11274
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11274
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GCCAAT.11274
 |name=Melanocyte - light, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11303,LSID905,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10010,,,
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 |rna_box=116
 |rna_catalog_number=CA104-R10n
@@ Line 60: / Line 82: @@
 |rna_tube_id=116H5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10010.GCCAAT
 |sample_age=Neonatal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11274-116H5;search_select_hide=table117:FF:11274-116H5
 }}

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FF:11274-116H5: Difference between revisions

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Latest revision as of 16:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0