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{{f5samples
{{f5samples
|id=FF:11275-116H6
|DRA_sample_Accession=CAGE@SAMD00005090
|name=Neural stem cells, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005090
|sample_id=11275
|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055;DRZ012020;DRZ013405
|rna_tube_id=116H6
|accession_numbers_RNASeq=sRNA-Seq;DRX037175;DRR041541;DRZ007183
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|rna_position=H6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2457
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=19 weeks old fetus
|sample_tissue=brain
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=embryo 19week
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=neural stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.4
|sample_note=
|profile_hcage=CNhs11063,LSID723,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10011,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000047,CL:0000048,CL:0000133,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.31!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.11!33.29!SALL2;;chr8:60031934..60031986,-!p6@TOX!1.09!11.43!TOX;;chr5:88081308..88081333,-!p8@MEF2C!1.09!11.18!MEF2C;;chr6:99282570..99282591,+!p4@POU3F2!1.09!11.18!POU3F2;;chr4:57547870..57547873,-!p11@HOPX!1.09!11.18!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.08!23.88!TOX;;chrX:84498989..84499003,+!p1@ZNF711!1.08!15.25!ZNF711;;chr3:185826855..185826911,-!p1@ETV5!1.07!295.51!ETV5;;chr3:147111231..147111281,+!p3@ZIC1!1.07!10.67!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr13:95364761..95364780,-!p2@SOX21!1.07!10.67!SOX21;;chr11:31832687..31832704,-!p6@PAX6!1.06!10.42!PAX6;;chr13:112721457..112721482,+!p1@SOX1!1.06!10.42!SOX1;;chr7:14026063..14026091,-!p10@ETV1!1.06!10.42!ETV1;;chr1:167298300..167298319,+!p2@POU2F1!1.05!10.16!POU2F1;;chr10:31608127..31608156,+!p1@ZEB1!1.04!184.22!ZEB1;;chr1:61330997..61331017,+!p17@NFIA!1.04!9.91!NFIA;;chr10:119302645..119302712,+!p3@EMX2!1.03!9.66!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.03!9.66!KAT7;;chr7:28725740..28725778,+!p1@CREB5!1.02!85.63!CREB5;;chr7:42192043..42192057,-!p10@GLI3!1.02!9.40!GLI3;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.02!9.40!POU3F3;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.02!9.40!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.89!ZFHX4;;chr2:172950227..172950249,+!p2@DLX1!1.01!9.15!DLX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.15!ZNF385D;;chr4:57547820..57547829,-!p8@HOPX!1.01!9.15!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.01!9.15!NPAS3;;chr11:31832581..31832601,-!p7@PAX6!1.00!8.89!PAX6;;chr6:99282475..99282501,+!p1@POU3F2!1.00!8.89!POU3F2;;chr19:19976683..19976709,+!p1@ZNF253!0.99!39.38!ZNF253;;chrX:84499081..84499115,+!p2@ZNF711!0.99!13.21!ZNF711;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.35!ZNF521;;chr16:51185149..51185160,-!p5@SALL1!0.98!8.64!SALL1;;chr1:42384486..42384501,-!p6@HIVEP3!0.98!8.64!HIVEP3;;chr11:16627528..16627550,-!p7@SOX6!0.98!8.64!SOX6;;chr11:16627614..16627651,-!p4@SOX6!0.98!8.64!SOX6;;chr14:29236510..29236521,+!p9@FOXG1!0.98!8.64!FOXG1;;chr18:56531584..56531646,+!p4@ZNF532!0.97!11.18!ZNF532;;chr14:29236460..29236467,+!p12@FOXG1!0.97!8.39!FOXG1;;chr7:14025816..14025842,-!p9@ETV1!0.97!8.39!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.11!MEIS2;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.83!ETV4;;chr6:99283040..99283063,+!p5@POU3F2!0.96!8.13!POU3F2;;chrX:136648279..136648295,+!p1@ZIC3!0.96!8.13!ZIC3;;chr1:151032957..151032968,+!p7@MLLT11!0.96!8.13!MLLT11;;chr12:24103844..24103880,-!p3@SOX5!0.96!8.13!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!0.95!14.74!ZNF532;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.16!NCOR2;;chrX:136648643..136648711,+!p2@ZIC3!0.95!7.88!ZIC3;;chr7:14025855..14025890,-!p6@ETV1!0.95!7.88!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.95!7.88!SOX11;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.20!ZNF43;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.29!BACH2;;chr12:24715376..24715432,-!p1@SOX5!0.94!9.91!SOX5;;chr13:100634004..100634025,+!p2@ZIC2!0.94!7.62!ZIC2;;chr13:28366616..28366622,+!p1@GSX1!0.94!7.62!GSX1;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.93!NFIB;;chr1:164528687..164528711,+!p6@PBX1!0.93!8.89!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.64!E2F2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.39!HOPX;;chr3:114173720..114173794,-!p6@ZBTB20!0.92!7.37!ZBTB20;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.37!TFAP2C;;chrX:139587228..139587234,-!p1@SOX3!0.92!7.37!SOX3;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.21!NFIB;;chr3:114173654..114173696,-!p12@ZBTB20!0.91!7.11!ZBTB20;;chr4:57547773..57547780,-!p12@HOPX!0.91!7.11!HOPX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.11!ZSCAN1;;chr7:42276822..42276895,-!p2@GLI3!0.90!21.60!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.09!NFIA;;chr2:25475120..25475176,-!p2@DNMT3A!0.90!9.40!DNMT3A;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.86!POU3F2;;chr10:119302268..119302282,+!p4@EMX2!0.90!6.86!EMX2;;chr19:57352109..57352153,-!p2@ZIM2!0.90!6.86!ZIM2;;chr19:23299851..23299880,+!p2@ZNF730!0.90!6.86!ZNF730;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.84!SALL2;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.40!BHLHE41;;chr19:23433144..23433204,-!p1@ZNF724P!0.88!30.75!ZNF724P;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.39!DPF1;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.61!POU3F4;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.61!NPAS3;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.95!SOX4;;chr14:33403930..33403943,+!p7@NPAS3!0.87!6.35!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.35!HEYL;;chr3:181429641..181429650,+!p3@SOX2!0.87!6.35!SOX2;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.35!NFIB;;chr1:59249732..59249749,-!p2@JUN!0.86!80.80!JUN;;chr11:16629261..16629284,-!p1@SOX6!0.85!6.10!SOX6;;chr22:38380543..38380569,-!p1@SOX10!0.85!6.10!SOX10;;chr18:22932004..22932021,-!p2@ZNF521!0.85!6.10!ZNF521;;chr19:13135582..13135600,+!p3@NFIX!0.85!6.10!NFIX;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.04!MEF2C;;chr5:124082279..124082319,-!p3@ZNF6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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=116
|rna_catalog_number=custom
|rna_concentration=0.4
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2457
|rna_od260/230=
|rna_od260/280=
|rna_position=H6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116H6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.ATGTCA
|sample_age=embryo 19week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=neural stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=19 weeks old fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20324195200997e-234!GO:0043226;organelle;1.754350872479e-193!GO:0043229;intracellular organelle;1.44249610122397e-192!GO:0043227;membrane-bound organelle;1.1847092503095e-188!GO:0043231;intracellular membrane-bound organelle;1.3018490320821e-188!GO:0005737;cytoplasm;3.21630677765336e-145!GO:0044422;organelle part;1.98909357332243e-124!GO:0044446;intracellular organelle part;6.02550114388866e-123!GO:0005634;nucleus;2.07145040272937e-96!GO:0044444;cytoplasmic part;1.747117798361e-90!GO:0032991;macromolecular complex;6.16450241660695e-88!GO:0005515;protein binding;1.32380585764915e-81!GO:0044238;primary metabolic process;2.32828273233474e-73!GO:0043170;macromolecule metabolic process;8.73202935360696e-72!GO:0044237;cellular metabolic process;1.82267330202443e-71!GO:0030529;ribonucleoprotein complex;1.16641580955501e-68!GO:0044428;nuclear part;1.16641580955501e-68!GO:0016043;cellular component organization and biogenesis;2.96535841677685e-63!GO:0003723;RNA binding;2.97244821350293e-62!GO:0043233;organelle lumen;8.31941811511807e-62!GO:0031974;membrane-enclosed lumen;8.31941811511807e-62!GO:0043283;biopolymer metabolic process;1.84892235018059e-54!GO:0010467;gene expression;4.64283551515427e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.85994032058752e-49!GO:0043234;protein complex;1.39190167889974e-45!GO:0006396;RNA processing;7.11260189498785e-45!GO:0033036;macromolecule localization;4.82170633507181e-42!GO:0016071;mRNA metabolic process;4.76505073881341e-41!GO:0031981;nuclear lumen;9.32658519468202e-41!GO:0005739;mitochondrion;4.07315644548501e-40!GO:0015031;protein transport;3.25888372284509e-39!GO:0008380;RNA splicing;1.29509157734622e-38!GO:0006996;organelle organization and biogenesis;6.42288299918514e-38!GO:0031090;organelle membrane;1.00389318351131e-37!GO:0008104;protein localization;1.80896799168825e-37!GO:0045184;establishment of protein localization;8.47767255333081e-36!GO:0006397;mRNA processing;1.61703464337999e-35!GO:0005840;ribosome;1.73785269344992e-34!GO:0043228;non-membrane-bound organelle;2.2689182079236e-34!GO:0043232;intracellular non-membrane-bound organelle;2.2689182079236e-34!GO:0003676;nucleic acid binding;4.08299997182025e-34!GO:0046907;intracellular transport;4.7252246983528e-34!GO:0006259;DNA metabolic process;4.65397077468565e-31!GO:0006412;translation;1.87416385311801e-30!GO:0031967;organelle envelope;5.22432740804919e-30!GO:0031975;envelope;5.68078158310911e-30!GO:0003735;structural constituent of ribosome;1.34684884637366e-29!GO:0044429;mitochondrial part;2.59835307561468e-29!GO:0019538;protein metabolic process;7.86566952183733e-29!GO:0016070;RNA metabolic process;3.87703536564569e-28!GO:0065003;macromolecular complex assembly;8.67798907509214e-28!GO:0005681;spliceosome;9.74277523262768e-27!GO:0005654;nucleoplasm;6.39239373231485e-26!GO:0006886;intracellular protein transport;2.01853808740994e-25!GO:0044260;cellular macromolecule metabolic process;2.48559624668131e-25!GO:0005829;cytosol;4.4350049031934e-25!GO:0044267;cellular protein metabolic process;5.05744765656834e-25!GO:0007049;cell cycle;7.16644204526636e-25!GO:0033279;ribosomal subunit;8.29416566426772e-25!GO:0022607;cellular component assembly;8.44061050548019e-25!GO:0051649;establishment of cellular localization;1.25813276901565e-23!GO:0009059;macromolecule biosynthetic process;3.72696598295506e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.81560414977737e-23!GO:0051641;cellular localization;5.06752185757162e-23!GO:0000166;nucleotide binding;1.06225564967916e-22!GO:0009058;biosynthetic process;1.99066070844208e-22!GO:0044249;cellular biosynthetic process;2.15135113695832e-21!GO:0044451;nucleoplasm part;3.46591943282705e-21!GO:0017111;nucleoside-triphosphatase activity;4.03792172859715e-21!GO:0016462;pyrophosphatase activity;4.35059207650873e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.63864362702498e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.81159050000957e-21!GO:0019866;organelle inner membrane;6.15060647655918e-19!GO:0005740;mitochondrial envelope;1.97246953221953e-18!GO:0022402;cell cycle process;2.06514808708541e-18!GO:0006119;oxidative phosphorylation;4.14962107354325e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.56212173002038e-18!GO:0051276;chromosome organization and biogenesis;5.78880462541682e-18!GO:0005694;chromosome;6.53223097074053e-18!GO:0000278;mitotic cell cycle;1.23730860306616e-17!GO:0031966;mitochondrial membrane;1.56200761110512e-17!GO:0005743;mitochondrial inner membrane;5.12511341199056e-17!GO:0006974;response to DNA damage stimulus;1.77880777416028e-16!GO:0006512;ubiquitin cycle;2.21079012823057e-16!GO:0012505;endomembrane system;2.84369305301517e-16!GO:0044427;chromosomal part;7.83764952454415e-16!GO:0048770;pigment granule;1.02679399460789e-15!GO:0042470;melanosome;1.02679399460789e-15!GO:0016874;ligase activity;1.13002387879334e-15!GO:0044445;cytosolic part;2.00176529928027e-15!GO:0050794;regulation of cellular process;2.21358512089847e-15!GO:0005794;Golgi apparatus;3.57958844954224e-15!GO:0008134;transcription factor binding;4.14261136853286e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.20394070328878e-15!GO:0006457;protein folding;7.28627963763873e-15!GO:0032553;ribonucleotide binding;7.59544784750258e-15!GO:0032555;purine ribonucleotide binding;7.59544784750258e-15!GO:0022618;protein-RNA complex assembly;9.17251895981444e-15!GO:0006323;DNA packaging;2.25799482320738e-14!GO:0005730;nucleolus;2.51913455415412e-14!GO:0000087;M phase of mitotic cell cycle;5.03874467730788e-14!GO:0017076;purine nucleotide binding;6.95608722237582e-14!GO:0007067;mitosis;1.07086570029004e-13!GO:0015630;microtubule cytoskeleton;1.2957063727922e-13!GO:0031980;mitochondrial lumen;2.77617225400601e-13!GO:0005759;mitochondrial matrix;2.77617225400601e-13!GO:0044455;mitochondrial membrane part;2.81791702569017e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.49088943940246e-13!GO:0015935;small ribosomal subunit;3.54788000005129e-13!GO:0050789;regulation of biological process;3.54788000005129e-13!GO:0006281;DNA repair;3.89670738045314e-13!GO:0008135;translation factor activity, nucleic acid binding;4.52205944609882e-13!GO:0022403;cell cycle phase;5.32572915692244e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.00579102861374e-13!GO:0006511;ubiquitin-dependent protein catabolic process;9.55135132912525e-13!GO:0019941;modification-dependent protein catabolic process;1.15099248769204e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.15099248769204e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.26910617763984e-12!GO:0000375;RNA splicing, via transesterification reactions;1.26910617763984e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.26910617763984e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.23365494628621e-12!GO:0044257;cellular protein catabolic process;2.29990963223828e-12!GO:0006605;protein targeting;2.53139439937925e-12!GO:0015934;large ribosomal subunit;2.56330309413629e-12!GO:0031965;nuclear membrane;2.58133878974266e-12!GO:0051301;cell division;2.58133878974266e-12!GO:0043285;biopolymer catabolic process;2.61727770796375e-12!GO:0048193;Golgi vesicle transport;3.94481352157003e-12!GO:0044265;cellular macromolecule catabolic process;4.09128346006075e-12!GO:0005635;nuclear envelope;4.66328611463853e-12!GO:0030163;protein catabolic process;5.25294722337391e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.22911948134411e-11!GO:0003954;NADH dehydrogenase activity;1.22911948134411e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.22911948134411e-11!GO:0016192;vesicle-mediated transport;1.51786248232263e-11!GO:0005746;mitochondrial respiratory chain;1.60529443806098e-11!GO:0051082;unfolded protein binding;2.47561267926058e-11!GO:0016604;nuclear body;2.51996823559084e-11!GO:0005524;ATP binding;2.66793995827451e-11!GO:0016887;ATPase activity;3.01509589544254e-11!GO:0032559;adenyl ribonucleotide binding;4.3154923134054e-11!GO:0006260;DNA replication;6.78253405107281e-11!GO:0044453;nuclear membrane part;7.09141485756955e-11!GO:0009057;macromolecule catabolic process;7.36560763278844e-11!GO:0042623;ATPase activity, coupled;1.04249084127307e-10!GO:0006366;transcription from RNA polymerase II promoter;1.29018127957353e-10!GO:0000279;M phase;1.44767988869565e-10!GO:0043412;biopolymer modification;1.81438154646027e-10!GO:0006403;RNA localization;1.81438154646027e-10!GO:0016607;nuclear speck;2.11147332670591e-10!GO:0006333;chromatin assembly or disassembly;2.23865434168014e-10!GO:0009719;response to endogenous stimulus;2.3412312396338e-10!GO:0006913;nucleocytoplasmic transport;2.46803826535762e-10!GO:0005761;mitochondrial ribosome;3.03625046934164e-10!GO:0000313;organellar ribosome;3.03625046934164e-10!GO:0004386;helicase activity;3.14350360297855e-10!GO:0030554;adenyl nucleotide binding;3.98489582619496e-10!GO:0050657;nucleic acid transport;4.05527451199658e-10!GO:0051236;establishment of RNA localization;4.05527451199658e-10!GO:0050658;RNA transport;4.05527451199658e-10!GO:0000074;regulation of progression through cell cycle;4.15085414363189e-10!GO:0051726;regulation of cell cycle;4.26811104394312e-10!GO:0003743;translation initiation factor activity;5.51829796103296e-10!GO:0019222;regulation of metabolic process;5.72185662822542e-10!GO:0065004;protein-DNA complex assembly;6.14009972371211e-10!GO:0042775;organelle ATP synthesis coupled electron transport;6.40146962591113e-10!GO:0042773;ATP synthesis coupled electron transport;6.40146962591113e-10!GO:0030964;NADH dehydrogenase complex (quinone);6.59456280772958e-10!GO:0045271;respiratory chain complex I;6.59456280772958e-10!GO:0005747;mitochondrial respiratory chain complex I;6.59456280772958e-10!GO:0051169;nuclear transport;7.02147077408336e-10!GO:0005643;nuclear pore;7.78962483095115e-10!GO:0000785;chromatin;8.91754643422082e-10!GO:0008565;protein transporter activity;1.04637679883907e-09!GO:0005783;endoplasmic reticulum;1.41927386448516e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.51640558863954e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.57826690950255e-09!GO:0008639;small protein conjugating enzyme activity;1.81458398326125e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13014384610011e-09!GO:0048523;negative regulation of cellular process;2.13036544688284e-09!GO:0003712;transcription cofactor activity;2.3972513954716e-09!GO:0004842;ubiquitin-protein ligase activity;2.88782226757616e-09!GO:0006464;protein modification process;4.20235508222658e-09!GO:0019787;small conjugating protein ligase activity;4.43850594675792e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.04026842298081e-09!GO:0006413;translational initiation;7.05461529521863e-09!GO:0042254;ribosome biogenesis and assembly;7.07928609519118e-09!GO:0006446;regulation of translational initiation;7.47450860198289e-09!GO:0044248;cellular catabolic process;1.05958535228629e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.48662878181349e-08!GO:0051186;cofactor metabolic process;1.78909008085686e-08!GO:0003924;GTPase activity;2.41889433223079e-08!GO:0051028;mRNA transport;2.66720724264648e-08!GO:0044432;endoplasmic reticulum part;2.94535290212565e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.83176655422225e-08!GO:0008026;ATP-dependent helicase activity;3.88643216263612e-08!GO:0031252;leading edge;3.95000001365e-08!GO:0009259;ribonucleotide metabolic process;3.98914586080725e-08!GO:0043687;post-translational protein modification;4.13898579032067e-08!GO:0065002;intracellular protein transport across a membrane;4.62611022511069e-08!GO:0006163;purine nucleotide metabolic process;5.8001573126962e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.55927521660722e-08!GO:0019829;cation-transporting ATPase activity;7.07511329153723e-08!GO:0006350;transcription;7.78601045463015e-08!GO:0016881;acid-amino acid ligase activity;8.05301354673642e-08!GO:0031323;regulation of cellular metabolic process;8.53400144261474e-08!GO:0031988;membrane-bound vesicle;9.22708528774388e-08!GO:0009150;purine ribonucleotide metabolic process;9.22708528774388e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.18420535879491e-07!GO:0048519;negative regulation of biological process;1.20572116386801e-07!GO:0015986;ATP synthesis coupled proton transport;1.3175447400197e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.3175447400197e-07!GO:0016568;chromatin modification;1.34469431562635e-07!GO:0006334;nucleosome assembly;1.46906392867046e-07!GO:0031982;vesicle;2.38447596555655e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.48795569595787e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.72156323769589e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.74440036415821e-07!GO:0006164;purine nucleotide biosynthetic process;2.7979147002703e-07!GO:0043566;structure-specific DNA binding;3.2227725012962e-07!GO:0009260;ribonucleotide biosynthetic process;3.37783362997226e-07!GO:0009141;nucleoside triphosphate metabolic process;3.43812692963649e-07!GO:0044431;Golgi apparatus part;3.63387439487204e-07!GO:0046930;pore complex;3.76254522482677e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.82635138714482e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.82635138714482e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.44174940633243e-07!GO:0003697;single-stranded DNA binding;4.5382182030796e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.07555502829675e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.07555502829675e-07!GO:0065007;biological regulation;5.2252258004679e-07!GO:0006732;coenzyme metabolic process;5.2252258004679e-07!GO:0006461;protein complex assembly;5.6069218456715e-07!GO:0007010;cytoskeleton organization and biogenesis;5.7371086016875e-07!GO:0009060;aerobic respiration;5.98556780215436e-07!GO:0031410;cytoplasmic vesicle;6.74350769456391e-07!GO:0031497;chromatin assembly;6.91715318221627e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.14645173169836e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.14645173169836e-07!GO:0045333;cellular respiration;8.66255546181184e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.16008454118371e-07!GO:0010468;regulation of gene expression;9.88170303369596e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.19459690374291e-06!GO:0046034;ATP metabolic process;1.55124672611212e-06!GO:0005874;microtubule;1.6532036845951e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.78212335640604e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.80410812059244e-06!GO:0032446;protein modification by small protein conjugation;1.9089339211032e-06!GO:0005768;endosome;2.22675872472942e-06!GO:0017038;protein import;2.30409399362745e-06!GO:0006754;ATP biosynthetic process;2.35732276732572e-06!GO:0006753;nucleoside phosphate metabolic process;2.35732276732572e-06!GO:0030120;vesicle coat;2.40626169841421e-06!GO:0030662;coated vesicle membrane;2.40626169841421e-06!GO:0000245;spliceosome assembly;2.41235162979179e-06!GO:0005813;centrosome;2.58255631510444e-06!GO:0005793;ER-Golgi intermediate compartment;3.21087266488505e-06!GO:0016567;protein ubiquitination;3.99241759600183e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.17120940635044e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.60539250910255e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.60539250910255e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.60539250910255e-06!GO:0032774;RNA biosynthetic process;4.65418811292327e-06!GO:0005525;GTP binding;5.01375266959152e-06!GO:0000902;cell morphogenesis;5.01375266959152e-06!GO:0032989;cellular structure morphogenesis;5.01375266959152e-06!GO:0031324;negative regulation of cellular metabolic process;5.06137521984978e-06!GO:0000775;chromosome, pericentric region;5.08761880371186e-06!GO:0008092;cytoskeletal protein binding;5.3149901803955e-06!GO:0006351;transcription, DNA-dependent;5.38181148535683e-06!GO:0048475;coated membrane;6.05963105484462e-06!GO:0030117;membrane coat;6.05963105484462e-06!GO:0005815;microtubule organizing center;6.09662907617617e-06!GO:0012501;programmed cell death;6.26560260566788e-06!GO:0016363;nuclear matrix;6.29800635880254e-06!GO:0005667;transcription factor complex;6.62843417862968e-06!GO:0045786;negative regulation of progression through cell cycle;6.66917358983845e-06!GO:0006099;tricarboxylic acid cycle;7.56679920920297e-06!GO:0046356;acetyl-CoA catabolic process;7.56679920920297e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.7904738097857e-06!GO:0015631;tubulin binding;8.33104704344082e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.95669745560542e-06!GO:0006613;cotranslational protein targeting to membrane;1.01926432992163e-05!GO:0043038;amino acid activation;1.11636773254067e-05!GO:0006418;tRNA aminoacylation for protein translation;1.11636773254067e-05!GO:0043039;tRNA aminoacylation;1.11636773254067e-05!GO:0007017;microtubule-based process;1.26940915549617e-05!GO:0005789;endoplasmic reticulum membrane;1.34203656392802e-05!GO:0003724;RNA helicase activity;1.36621136904908e-05!GO:0005798;Golgi-associated vesicle;1.40247496835982e-05!GO:0005819;spindle;1.42663690568261e-05!GO:0006915;apoptosis;1.42998858853626e-05!GO:0006364;rRNA processing;1.4342007199164e-05!GO:0009892;negative regulation of metabolic process;1.44775323121854e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.45150886789152e-05!GO:0000139;Golgi membrane;1.67536196108648e-05!GO:0006399;tRNA metabolic process;1.90914518508485e-05!GO:0051329;interphase of mitotic cell cycle;1.92083867261662e-05!GO:0006084;acetyl-CoA metabolic process;1.92858779035123e-05!GO:0006261;DNA-dependent DNA replication;1.92858779035123e-05!GO:0008219;cell death;2.03577928433168e-05!GO:0016265;death;2.03577928433168e-05!GO:0045449;regulation of transcription;2.24661861506424e-05!GO:0045259;proton-transporting ATP synthase complex;2.39981639769593e-05!GO:0051168;nuclear export;2.9139251148076e-05!GO:0016564;transcription repressor activity;2.9139251148076e-05!GO:0005770;late endosome;3.42509187625692e-05!GO:0003729;mRNA binding;3.4375066794182e-05!GO:0016072;rRNA metabolic process;3.46916035109361e-05!GO:0009056;catabolic process;3.94074795502415e-05!GO:0051427;hormone receptor binding;4.19939373362678e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.06442429932987e-05!GO:0016481;negative regulation of transcription;5.24432706670195e-05!GO:0051325;interphase;5.24432706670195e-05!GO:0019899;enzyme binding;5.4852175776867e-05!GO:0032561;guanyl ribonucleotide binding;5.63065947044924e-05!GO:0019001;guanyl nucleotide binding;5.63065947044924e-05!GO:0003713;transcription coactivator activity;5.8052104057707e-05!GO:0051170;nuclear import;5.8052104057707e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.15664918452397e-05!GO:0003682;chromatin binding;6.69237153132879e-05!GO:0044440;endosomal part;6.72487924719594e-05!GO:0010008;endosome membrane;6.72487924719594e-05!GO:0009109;coenzyme catabolic process;7.23354794631153e-05!GO:0006606;protein import into nucleus;7.89227748416854e-05!GO:0035257;nuclear hormone receptor binding;8.68988101277857e-05!GO:0007051;spindle organization and biogenesis;8.89791660397238e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.91391022787585e-05!GO:0008361;regulation of cell size;0.000101271662969923!GO:0043623;cellular protein complex assembly;0.000110354611457969!GO:0006793;phosphorus metabolic process;0.000115233453379547!GO:0006796;phosphate metabolic process;0.000115233453379547!GO:0003677;DNA binding;0.000115764710129456!GO:0051187;cofactor catabolic process;0.000119585405981148!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000121405396945043!GO:0003714;transcription corepressor activity;0.000133978643306702!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000135661940906281!GO:0016563;transcription activator activity;0.000137971694311339!GO:0016049;cell growth;0.000143865418731895!GO:0006752;group transfer coenzyme metabolic process;0.000157975948437259!GO:0009055;electron carrier activity;0.000162545430760119!GO:0051188;cofactor biosynthetic process;0.000173616895788164!GO:0006355;regulation of transcription, DNA-dependent;0.000175797648654558!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000184436622359075!GO:0030027;lamellipodium;0.000187434058422394!GO:0008186;RNA-dependent ATPase activity;0.000188815727473439!GO:0016310;phosphorylation;0.000206614134893498!GO:0000151;ubiquitin ligase complex;0.000216512328624196!GO:0043069;negative regulation of programmed cell death;0.000227283434418511!GO:0000776;kinetochore;0.00024421971540417!GO:0000075;cell cycle checkpoint;0.000258504961316083!GO:0007059;chromosome segregation;0.000276848418465298!GO:0007005;mitochondrion organization and biogenesis;0.000284940558501285!GO:0048471;perinuclear region of cytoplasm;0.000285437810390372!GO:0030867;rough endoplasmic reticulum membrane;0.000287470240032409!GO:0005657;replication fork;0.000288801245117038!GO:0004298;threonine endopeptidase activity;0.000299131005147652!GO:0003690;double-stranded DNA binding;0.000299612700674102!GO:0001558;regulation of cell growth;0.000330113508227873!GO:0005048;signal sequence binding;0.000355156283966014!GO:0051246;regulation of protein metabolic process;0.000365665883940327!GO:0043066;negative regulation of apoptosis;0.000381248755748873!GO:0048468;cell development;0.000394077194699512!GO:0008654;phospholipid biosynthetic process;0.000394077194699512!GO:0005788;endoplasmic reticulum lumen;0.000456592796798495!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00047179540098874!GO:0001726;ruffle;0.000524636379411242!GO:0004004;ATP-dependent RNA helicase activity;0.000566710957553501!GO:0005905;coated pit;0.000577829299999185!GO:0031124;mRNA 3'-end processing;0.000577829299999185!GO:0007264;small GTPase mediated signal transduction;0.000676494529680652!GO:0005769;early endosome;0.00068908749142277!GO:0009117;nucleotide metabolic process;0.000747084588612811!GO:0006402;mRNA catabolic process;0.000767463099251712!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000790325060861162!GO:0009108;coenzyme biosynthetic process;0.000804138450087371!GO:0005875;microtubule associated complex;0.000876401447329242!GO:0016044;membrane organization and biogenesis;0.000889464029260914!GO:0006916;anti-apoptosis;0.000935852226354322!GO:0007050;cell cycle arrest;0.00101694160508292!GO:0006891;intra-Golgi vesicle-mediated transport;0.00115904979193558!GO:0043021;ribonucleoprotein binding;0.00118688437618155!GO:0008250;oligosaccharyl transferase complex;0.00124304581736041!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00126109758486324!GO:0045893;positive regulation of transcription, DNA-dependent;0.00131771556292611!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00142650038610029!GO:0015980;energy derivation by oxidation of organic compounds;0.00146199683018012!GO:0006302;double-strand break repair;0.00147814034205363!GO:0033673;negative regulation of kinase activity;0.0015530315378202!GO:0006469;negative regulation of protein kinase activity;0.0015530315378202!GO:0030036;actin cytoskeleton organization and biogenesis;0.00157825296472684!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00163475383840264!GO:0015399;primary active transmembrane transporter activity;0.00163475383840264!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.001644637276114!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00172508926490129!GO:0016740;transferase activity;0.00173469087071407!GO:0008017;microtubule binding;0.00177490206894835!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00188091284332245!GO:0051087;chaperone binding;0.00195371581399171!GO:0050767;regulation of neurogenesis;0.00195942260070831!GO:0006612;protein targeting to membrane;0.0019789885205647!GO:0045892;negative regulation of transcription, DNA-dependent;0.00214651397455594!GO:0051920;peroxiredoxin activity;0.00214661567887901!GO:0005762;mitochondrial large ribosomal subunit;0.00216006802543681!GO:0000315;organellar large ribosomal subunit;0.00216006802543681!GO:0004576;oligosaccharyl transferase activity;0.00216605015414972!GO:0005791;rough endoplasmic reticulum;0.00234848601856339!GO:0006383;transcription from RNA polymerase III promoter;0.00241187500368252!GO:0051052;regulation of DNA metabolic process;0.00244983868757531!GO:0006414;translational elongation;0.00251135013303652!GO:0016859;cis-trans isomerase activity;0.002512665172768!GO:0000059;protein import into nucleus, docking;0.00259592678307643!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00263750929572712!GO:0008270;zinc ion binding;0.00265563244572292!GO:0007052;mitotic spindle organization and biogenesis;0.0026666912121272!GO:0003899;DNA-directed RNA polymerase activity;0.00278365376639625!GO:0008094;DNA-dependent ATPase activity;0.00283149190757003!GO:0031123;RNA 3'-end processing;0.00284817226354057!GO:0000314;organellar small ribosomal subunit;0.00290914355894802!GO:0005763;mitochondrial small ribosomal subunit;0.00290914355894802!GO:0051252;regulation of RNA metabolic process;0.00292204981339486!GO:0048500;signal recognition particle;0.00294338227354904!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00301480155920441!GO:0045941;positive regulation of transcription;0.00303136558912118!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00304515725933046!GO:0000786;nucleosome;0.00309371445227935!GO:0005885;Arp2/3 protein complex;0.00314765320027601!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00327195580222145!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00327195580222145!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00327195580222145!GO:0051348;negative regulation of transferase activity;0.00335205535659886!GO:0008139;nuclear localization sequence binding;0.00336286052757182!GO:0006352;transcription initiation;0.00340132579926769!GO:0030521;androgen receptor signaling pathway;0.00356408861656626!GO:0016779;nucleotidyltransferase activity;0.00376935798995088!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00382820334313186!GO:0007399;nervous system development;0.00389659961357178!GO:0030658;transport vesicle membrane;0.00403496605209775!GO:0016853;isomerase activity;0.00404541768714835!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0041079678260836!GO:0043067;regulation of programmed cell death;0.00416884784313139!GO:0030660;Golgi-associated vesicle membrane;0.00427554796440102!GO:0045045;secretory pathway;0.00429026409709885!GO:0006405;RNA export from nucleus;0.00441656650422242!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00445080677960516!GO:0045047;protein targeting to ER;0.00445080677960516!GO:0007093;mitotic cell cycle checkpoint;0.00474818486766908!GO:0003711;transcription elongation regulator activity;0.00478582719286904!GO:0031072;heat shock protein binding;0.00478582719286904!GO:0042981;regulation of apoptosis;0.00479360978170752!GO:0000209;protein polyubiquitination;0.00493415615222365!GO:0043488;regulation of mRNA stability;0.00508873960464472!GO:0043487;regulation of RNA stability;0.00508873960464472!GO:0000082;G1/S transition of mitotic cell cycle;0.00513525660269152!GO:0016584;nucleosome positioning;0.00514960816232665!GO:0030137;COPI-coated vesicle;0.00515020420724677!GO:0003684;damaged DNA binding;0.00516049768708555!GO:0030029;actin filament-based process;0.00541596334814817!GO:0030663;COPI coated vesicle membrane;0.0056138808735513!GO:0030126;COPI vesicle coat;0.0056138808735513!GO:0005773;vacuole;0.00580757072469998!GO:0040008;regulation of growth;0.00583509412425786!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00594586870660884!GO:0046474;glycerophospholipid biosynthetic process;0.00596521519052644!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00597289792818033!GO:0018196;peptidyl-asparagine modification;0.00598147194929589!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00598147194929589!GO:0030133;transport vesicle;0.00606041270504322!GO:0016251;general RNA polymerase II transcription factor activity;0.00617554573875092!GO:0030127;COPII vesicle coat;0.00625877727667985!GO:0012507;ER to Golgi transport vesicle membrane;0.00625877727667985!GO:0008312;7S RNA binding;0.00630578751716353!GO:0051789;response to protein stimulus;0.00633833747308313!GO:0006986;response to unfolded protein;0.00633833747308313!GO:0048487;beta-tubulin binding;0.00667932498854934!GO:0035258;steroid hormone receptor binding;0.00686086565717149!GO:0006378;mRNA polyadenylation;0.00699937708332737!GO:0046467;membrane lipid biosynthetic process;0.00725141233856481!GO:0005637;nuclear inner membrane;0.00745653849132238!GO:0044452;nucleolar part;0.00787275428382983!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00796238460053972!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00807392213562946!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00852813243948233!GO:0030134;ER to Golgi transport vesicle;0.00864454357447645!GO:0003678;DNA helicase activity;0.00907416963562023!GO:0005869;dynactin complex;0.00932257813935215!GO:0051128;regulation of cellular component organization and biogenesis;0.00946707153646215!GO:0006650;glycerophospholipid metabolic process;0.00952355715289346!GO:0016197;endosome transport;0.00955501657162726!GO:0006338;chromatin remodeling;0.00980816586409772!GO:0043407;negative regulation of MAP kinase activity;0.0099314468677897!GO:0007088;regulation of mitosis;0.0100167742634996!GO:0000792;heterochromatin;0.0108932339380145!GO:0004674;protein serine/threonine kinase activity;0.0109957245151843!GO:0030118;clathrin coat;0.0111796598756438!GO:0043492;ATPase activity, coupled to movement of substances;0.011290015195096!GO:0006376;mRNA splice site selection;0.0116597786721418!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0116597786721418!GO:0030176;integral to endoplasmic reticulum membrane;0.0118597670075253!GO:0006611;protein export from nucleus;0.0118672089728145!GO:0003702;RNA polymerase II transcription factor activity;0.0119973053252948!GO:0016126;sterol biosynthetic process;0.012571245956241!GO:0006401;RNA catabolic process;0.0125820820555269!GO:0030880;RNA polymerase complex;0.0125820820555269!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0125820820555269!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0125820820555269!GO:0030384;phosphoinositide metabolic process;0.0127348583498985!GO:0006275;regulation of DNA replication;0.0128479103006697!GO:0006310;DNA recombination;0.0131953736493692!GO:0007033;vacuole organization and biogenesis;0.013274845275177!GO:0043284;biopolymer biosynthetic process;0.0135878395792306!GO:0000339;RNA cap binding;0.0137438571379937!GO:0005876;spindle microtubule;0.0137886460304033!GO:0050681;androgen receptor binding;0.0139636052270647!GO:0005684;U2-dependent spliceosome;0.0140057049304234!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0141126400067887!GO:0043681;protein import into mitochondrion;0.014135533573196!GO:0017166;vinculin binding;0.0143167802589901!GO:0003779;actin binding;0.0143167802589901!GO:0006607;NLS-bearing substrate import into nucleus;0.0144903172898427!GO:0006818;hydrogen transport;0.0148097950738514!GO:0008022;protein C-terminus binding;0.0149048088494937!GO:0015992;proton transport;0.0153266778105492!GO:0008320;protein transmembrane transporter activity;0.0155945198503317!GO:0000323;lytic vacuole;0.0157274654641981!GO:0005764;lysosome;0.0157274654641981!GO:0008629;induction of apoptosis by intracellular signals;0.0158847924195327!GO:0008601;protein phosphatase type 2A regulator activity;0.0158847924195327!GO:0046489;phosphoinositide biosynthetic process;0.0159660522389807!GO:0043086;negative regulation of catalytic activity;0.0160963460673975!GO:0005832;chaperonin-containing T-complex;0.0164951179719505!GO:0006897;endocytosis;0.0167831578907085!GO:0010324;membrane invagination;0.0167831578907085!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0169367310516302!GO:0031901;early endosome membrane;0.0169918597548776!GO:0043624;cellular protein complex disassembly;0.0170743432860862!GO:0009165;nucleotide biosynthetic process;0.0170750450395901!GO:0001725;stress fiber;0.0170884482821086!GO:0032432;actin filament bundle;0.0170884482821086!GO:0032508;DNA duplex unwinding;0.0171734410628095!GO:0032392;DNA geometric change;0.0171734410628095!GO:0003746;translation elongation factor activity;0.0184719112581037!GO:0006626;protein targeting to mitochondrion;0.0186862042709243!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0188927141703694!GO:0006289;nucleotide-excision repair;0.0195812165654043!GO:0033116;ER-Golgi intermediate compartment membrane;0.0201188255720981!GO:0006695;cholesterol biosynthetic process;0.0202449665519577!GO:0008180;signalosome;0.0203197906012392!GO:0016787;hydrolase activity;0.0207689975147699!GO:0019887;protein kinase regulator activity;0.0212240499455758!GO:0006595;polyamine metabolic process;0.0212334891525798!GO:0007021;tubulin folding;0.0212334891525798!GO:0031902;late endosome membrane;0.0222997717991381!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0226682501000521!GO:0000428;DNA-directed RNA polymerase complex;0.0226682501000521!GO:0012506;vesicle membrane;0.0228106429430711!GO:0031529;ruffle organization and biogenesis;0.0231360020298361!GO:0000096;sulfur amino acid metabolic process;0.0231664968830354!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0239420999147084!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0240885677127031!GO:0040029;regulation of gene expression, epigenetic;0.0240885677127031!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0241517827298394!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0241517827298394!GO:0000904;cellular morphogenesis during differentiation;0.0241892909305799!GO:0032200;telomere organization and biogenesis;0.0247784447344408!GO:0000723;telomere maintenance;0.0247784447344408!GO:0019207;kinase regulator activity;0.0252002289176169!GO:0048146;positive regulation of fibroblast proliferation;0.0256986999915113!GO:0030516;regulation of axon extension;0.0265826537586416!GO:0051656;establishment of organelle localization;0.0265826537586416!GO:0004860;protein kinase inhibitor activity;0.0267622760071702!GO:0032984;macromolecular complex disassembly;0.0270577491124744!GO:0007243;protein kinase cascade;0.0270577491124744!GO:0016408;C-acyltransferase activity;0.0271675277321174!GO:0019902;phosphatase binding;0.0271753644828979!GO:0006268;DNA unwinding during replication;0.0276359869822395!GO:0005669;transcription factor TFIID complex;0.0283559537374622!GO:0006509;membrane protein ectodomain proteolysis;0.0285134716346109!GO:0033619;membrane protein proteolysis;0.0285134716346109!GO:0030659;cytoplasmic vesicle membrane;0.0285629118101737!GO:0005741;mitochondrial outer membrane;0.0285833336334611!GO:0046914;transition metal ion binding;0.0292772553873334!GO:0005862;muscle thin filament tropomyosin;0.0294162953275122!GO:0007004;telomere maintenance via telomerase;0.0295389041053959!GO:0008287;protein serine/threonine phosphatase complex;0.0295389041053959!GO:0019843;rRNA binding;0.0296653111927176!GO:0000159;protein phosphatase type 2A complex;0.0298100712738912!GO:0050770;regulation of axonogenesis;0.0301137575859379!GO:0000049;tRNA binding;0.0307777978088809!GO:0065009;regulation of a molecular function;0.0310509120537338!GO:0031968;organelle outer membrane;0.0312399793072467!GO:0000922;spindle pole;0.03168149656049!GO:0030030;cell projection organization and biogenesis;0.0322672335097094!GO:0048858;cell projection morphogenesis;0.0322672335097094!GO:0032990;cell part morphogenesis;0.0322672335097094!GO:0044433;cytoplasmic vesicle part;0.0323373302830922!GO:0042585;germinal vesicle;0.0324175871173964!GO:0047485;protein N-terminus binding;0.0326597199721983!GO:0006635;fatty acid beta-oxidation;0.0330526632812824!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0331678140568212!GO:0055083;monovalent inorganic anion homeostasis;0.0331678140568212!GO:0055064;chloride ion homeostasis;0.0331678140568212!GO:0030644;cellular chloride ion homeostasis;0.0331678140568212!GO:0006839;mitochondrial transport;0.033851347568789!GO:0043130;ubiquitin binding;0.0343253560799816!GO:0032182;small conjugating protein binding;0.0343253560799816!GO:0051287;NAD binding;0.0346457536299739!GO:0016585;chromatin remodeling complex;0.0346457536299739!GO:0007040;lysosome organization and biogenesis;0.0348905485518927!GO:0008286;insulin receptor signaling pathway;0.0349222483705204!GO:0042026;protein refolding;0.0349977624185769!GO:0048144;fibroblast proliferation;0.0351539785286994!GO:0048145;regulation of fibroblast proliferation;0.0351539785286994!GO:0016407;acetyltransferase activity;0.0353749339228787!GO:0045454;cell redox homeostasis;0.0354710780707144!GO:0006284;base-excision repair;0.0354710780707144!GO:0050811;GABA receptor binding;0.0361422895727628!GO:0000781;chromosome, telomeric region;0.0369542428783466!GO:0030175;filopodium;0.0371664102232835!GO:0005856;cytoskeleton;0.0372270896418992!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0377124608058223!GO:0008097;5S rRNA binding;0.037758238692753!GO:0031970;organelle envelope lumen;0.0378801526820337!GO:0007006;mitochondrial membrane organization and biogenesis;0.0380328967433363!GO:0016272;prefoldin complex;0.0381728197207242!GO:0019867;outer membrane;0.0384514033636858!GO:0030518;steroid hormone receptor signaling pathway;0.0385333437963675!GO:0043631;RNA polyadenylation;0.0391296131796796!GO:0007265;Ras protein signal transduction;0.0391455835397277!GO:0007034;vacuolar transport;0.0391820627859595!GO:0007018;microtubule-based movement;0.0395196074702221!GO:0005784;translocon complex;0.04024807119765!GO:0006672;ceramide metabolic process;0.0417472581306862!GO:0043022;ribosome binding;0.0421180650858198!GO:0045210;FasL biosynthetic process;0.0431310452341617!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.043288070750031!GO:0005521;lamin binding;0.0436544466868577!GO:0017134;fibroblast growth factor binding;0.0438888328149859!GO:0031371;ubiquitin conjugating enzyme complex;0.044012730282734!GO:0000228;nuclear chromosome;0.0445702670440872!GO:0048522;positive regulation of cellular process;0.0448777874577648!GO:0051338;regulation of transferase activity;0.0450847841676233!GO:0030865;cortical cytoskeleton organization and biogenesis;0.045646944412503!GO:0004748;ribonucleoside-diphosphate reductase activity;0.045646944412503!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.045646944412503!GO:0043241;protein complex disassembly;0.0457030846707802!GO:0042158;lipoprotein biosynthetic process;0.0457030846707802!GO:0048667;neuron morphogenesis during differentiation;0.0457451286733342!GO:0048812;neurite morphogenesis;0.0457451286733342!GO:0008143;poly(A) binding;0.0464056708933013!GO:0006497;protein amino acid lipidation;0.0467913703257624!GO:0030182;neuron differentiation;0.0470222493122753!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0474021493430554!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0482205413224298!GO:0007019;microtubule depolymerization;0.0487962292618406!GO:0000725;recombinational repair;0.0488561769480734!GO:0000724;double-strand break repair via homologous recombination;0.0488561769480734!GO:0022406;membrane docking;0.0488936884788959!GO:0048278;vesicle docking;0.0488936884788959
|sample_id=11275
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brain
|top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11275-116H6;search_select_hide=table117:FF:11275-116H6
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Neural stem cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11063
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage19 weeks old fetus
sexunknown
ageembryo 19week
cell typeneural stem cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2457
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005090
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11063 CAGE DRX008373 DRR009245
Accession ID Hg19

Library idBAMCTSS
CNhs11063 DRZ000670 DRZ002055
Accession ID Hg38

Library idBAMCTSS
CNhs11063 DRZ012020 DRZ013405
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005090
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.ATGTCA sRNA-Seq DRX037175 DRR041541
Accession ID Hg19

Library idBAMCTSS
SRhi10011.ATGTCA DRZ007183


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0983
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0815
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.364
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0968
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.293
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.305
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.288
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.146
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.0983
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0983
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0983
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11063

Jaspar motifP-value
MA0002.28.49285e-4
MA0003.10.162
MA0004.10.21
MA0006.10.918
MA0007.10.171
MA0009.10.0487
MA0014.10.309
MA0017.10.00418
MA0018.20.724
MA0019.10.65
MA0024.10.00234
MA0025.10.764
MA0027.10.432
MA0028.10.68
MA0029.10.0641
MA0030.10.615
MA0031.10.0913
MA0035.20.0218
MA0038.13.63756e-4
MA0039.20.0349
MA0040.10.554
MA0041.10.352
MA0042.10.646
MA0043.10.561
MA0046.10.427
MA0047.20.00467
MA0048.10.457
MA0050.11.02795e-4
MA0051.10.051
MA0052.10.523
MA0055.10.00265
MA0057.10.407
MA0058.10.143
MA0059.10.0435
MA0060.17.23315e-4
MA0061.10.0184
MA0062.20.0985
MA0065.20.00159
MA0066.10.0925
MA0067.10.57
MA0068.10.0155
MA0069.10.893
MA0070.10.122
MA0071.10.035
MA0072.10.411
MA0073.10.741
MA0074.10.297
MA0076.10.997
MA0077.10.24
MA0078.10.39
MA0079.20.996
MA0080.24.36396e-10
MA0081.10.124
MA0083.10.224
MA0084.10.876
MA0087.10.596
MA0088.10.129
MA0090.10.133
MA0091.10.178
MA0092.10.631
MA0093.10.254
MA0099.23.97624e-5
MA0100.10.382
MA0101.10.0195
MA0102.20.044
MA0103.10.00589
MA0104.20.264
MA0105.10.00481
MA0106.10.234
MA0107.10.0164
MA0108.20.278
MA0111.10.628
MA0112.22.44986e-4
MA0113.10.0634
MA0114.10.02
MA0115.10.673
MA0116.10.00575
MA0117.10.844
MA0119.10.0819
MA0122.10.961
MA0124.10.651
MA0125.10.00303
MA0131.10.833
MA0135.10.0103
MA0136.12.19763e-7
MA0137.20.805
MA0138.20.464
MA0139.10.411
MA0140.10.0066
MA0141.10.00415
MA0142.13.78465e-4
MA0143.10.00352
MA0144.10.247
MA0145.10.397
MA0146.10.0197
MA0147.10.179
MA0148.10.0344
MA0149.10.00601
MA0150.15.45638e-4
MA0152.10.47
MA0153.10.769
MA0154.10.0272
MA0155.10.631
MA0156.19.76896e-5
MA0157.10.0345
MA0159.10.00848
MA0160.10.0126
MA0162.10.144
MA0163.13.72898e-4
MA0164.10.631
MA0258.10.0101
MA0259.10.525



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11063

Novel motifP-value
10.0429
100.0934
1000.36
1010.734
1020.73
1030.227
1040.133
1050.565
1060.129
1070.693
1080.591
1090.00328
110.0151
1100.0823
1110.0477
1120.0984
1130.82
1140.00799
1150.749
1160.356
1170.0185
1180.0934
1190.0875
120.892
1200.961
1210.557
1220.653
1230.247
1240.196
1250.895
1260.113
1270.068
1280.708
1290.417
130.0182
1300.467
1310.727
1320.742
1330.251
1340.693
1350.791
1360.106
1370.535
1380.396
1390.0176
140.794
1400.143
1410.661
1420.501
1430.0266
1440.777
1450.865
1460.665
1470.865
1480.269
1490.309
150.063
1500.321
1510.503
1520.075
1530.951
1540.64
1550.0918
1560.159
1570.706
1580.639
1590.326
160.0786
1600.086
1610.0764
1620.709
1630.88
1640.00592
1650.615
1660.922
1670.397
1680.599
1690.0133
170.073
180.36
190.29
20.812
200.264
210.125
220.245
230.298
240.611
250.539
260.018
270.64
280.878
290.0367
30.04
300.813
310.935
320.0237
330.286
340.693
350.764
360.0843
370.0342
380.117
390.549
40.968
400.0282
410.601
420.181
430.162
440.0819
450.867
460.102
470.042
480.067
490.122
50.257
500.581
510.497
520.732
530.721
540.379
550.409
560.411
570.289
580.148
590.111
60.558
600.135
610.0339
620.11
630.166
640.185
650.0949
660.972
670.561
680.5
690.554
70.27
700.0204
710.0358
720.494
730.0223
740.231
750.0235
760.236
770.064
780.0449
790.347
80.102
800.915
810.479
820.263
830.743
840.642
850.0926
860.402
870.0644
880.933
890.562
90.568
900.599
910.978
920.139
930.299
940.0825
950.0115
960.922
970.801
980.0948
990.911



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11063


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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