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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005265
|DRA_sample_Accession=CAGE@SAMD00005265
|accession_numbers=CAGE;DRX008472;DRR009344;DRZ000769;DRZ002154
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005265
|accession_numbers=CAGE;DRX008472;DRR009344;DRZ000769;DRZ002154;DRZ012119;DRZ013504
|accession_numbers_RNASeq=sRNA-Seq;DRX037158;DRR041524;DRZ007166
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589
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|library_id=CNhs11086
|library_id=CNhs11086
|library_id_phase_based=2:CNhs11086
|library_id_phase_based=2:CNhs11086
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11284
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTAGAG.11284
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11284
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTAGAG.11284
|name=Smooth Muscle Cells - Brachiocephalic, donor1
|name=Smooth Muscle Cells - Brachiocephalic, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 97: Line 106:
|top_motifs=GTF2A1,2:1.68901389041;PPARG:1.59680280157;HES1:1.42240566766;ALX4:1.37870629012;GCM1,2:1.31082007168;TFCP2:1.28034848445;SRF:1.27650379009;NFE2L1:1.21414020288;HOX{A5,B5}:1.18642020997;NFATC1..3:1.11307246573;ZBTB6:1.10869438157;HIF1A:1.08624616863;TFAP4:1.06074887671;GLI1..3:1.04009749807;HMX1:1.03386536683;ZIC1..3:1.03136861894;ZNF238:1.03113909429;EBF1:0.983439205664;MAFB:0.96685724127;IKZF1:0.955934063997;TLX1..3_NFIC{dimer}:0.951594712793;ZNF148:0.929889233444;ONECUT1,2:0.912720706221;TBX4,5:0.900887379821;ZNF423:0.860884721056;EN1,2:0.855339333353;TFAP2{A,C}:0.848803888654;NKX2-2,8:0.834970449565;CRX:0.809437276502;LHX3,4:0.804688288984;TAL1_TCF{3,4,12}:0.741630838535;SMAD1..7,9:0.723000273971;TP53:0.716644572205;NKX3-1:0.703836124948;NANOG{mouse}:0.702259341841;FOX{I1,J2}:0.673496140344;ATF6:0.6535125881;VSX1,2:0.636947863434;SOX17:0.636546291219;PAX5:0.617403099631;TEAD1:0.602378593736;POU3F1..4:0.586707468807;PAX1,9:0.563931252517;SPZ1:0.554544960484;ARID5B:0.534152408698;TBP:0.52685551981;KLF4:0.50051732044;NFE2L2:0.476106816089;HMGA1,2:0.475797967637;REST:0.464581251256;EVI1:0.459698928179;CDC5L:0.459471269188;HSF1,2:0.452797396418;XBP1:0.43043587965;BACH2:0.422276582375;STAT5{A,B}:0.419581602252;HAND1,2:0.416376412385;XCPE1{core}:0.40065751112;FOSL2:0.388705072851;GTF2I:0.387559451943;FOS_FOS{B,L1}_JUN{B,D}:0.384329533416;POU1F1:0.383492669563;LEF1_TCF7_TCF7L1,2:0.380392360405;POU2F1..3:0.375281383125;UFEwm:0.357883525451;MTE{core}:0.356861315421;NFIL3:0.353148211416;ELK1,4_GABP{A,B1}:0.307248924595;AR:0.305628931631;AHR_ARNT_ARNT2:0.291954465664;GZF1:0.289314062365;HLF:0.289035347759;POU6F1:0.287400959758;ZNF384:0.284024916154;PRDM1:0.273604494494;JUN:0.26633588367;PATZ1:0.264756474327;SOX{8,9,10}:0.261216323197;NKX3-2:0.260629437703;NR3C1:0.242135415017;TFAP2B:0.236765049976;MZF1:0.221783004113;MAZ:0.208362372595;HIC1:0.205585407818;FOXL1:0.197059003524;MYFfamily:0.19419508387;PBX1:0.191743597552;MYBL2:0.183974452484;CEBPA,B_DDIT3:0.179959360463;GATA4:0.172238593501;GFI1B:0.162552904046;FOXQ1:0.15174345007;RXR{A,B,G}:0.145322825607;PRRX1,2:0.125840237611;HNF1A:0.125350758503;NHLH1,2:0.122184305626;NR1H4:0.110228849802;ESR1:0.10453695999;MEF2{A,B,C,D}:0.100996652276;ADNP_IRX_SIX_ZHX:0.0870226698974;ALX1:0.0737122747272;PAX8:0.0731823874031;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0717165083441;NFE2:0.0334049085001;NFKB1_REL_RELA:-0.00517432406802;ETS1,2:-0.0382745565966;SOX2:-0.0395052965767;YY1:-0.0582017945675;bHLH_family:-0.0648573030063;ZFP161:-0.0889737823534;SP1:-0.0958810721264;TLX2:-0.110996746838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12467045729;RFX1:-0.126688919191;NFIX:-0.138478758338;MTF1:-0.140544903947;DBP:-0.144575695478;ELF1,2,4:-0.147800264207;PAX3,7:-0.195674646357;FOXM1:-0.203834310826;NANOG:-0.209681334858;ZNF143:-0.211424611444;GFI1:-0.215086525213;PAX2:-0.216290964562;GATA6:-0.217641996947;RUNX1..3:-0.219651945852;RREB1:-0.235159796255;NRF1:-0.238938239863;MED-1{core}:-0.256846556723;POU5F1:-0.261488355745;SPIB:-0.278918566087;EGR1..3:-0.294141787632;AIRE:-0.307764684007;TEF:-0.311126341129;STAT2,4,6:-0.314675794825;RXRA_VDR{dimer}:-0.316879409459;NR5A1,2:-0.319819331716;EP300:-0.33593581795;HBP1_HMGB_SSRP1_UBTF:-0.337151801075;TGIF1:-0.337622004951;ESRRA:-0.339888949766;SPI1:-0.344209699948;NKX2-3_NKX2-5:-0.348682624827;MYB:-0.358999945258;HNF4A_NR2F1,2:-0.366784422531;TFDP1:-0.367163640774;SOX5:-0.367642959697;TOPORS:-0.42801836061;LMO2:-0.484589084519;ATF5_CREB3:-0.50061062129;FOX{D1,D2}:-0.516287014978;HOX{A4,D4}:-0.532406519347;RORA:-0.546415305325;CREB1:-0.551495848324;FOX{F1,F2,J1}:-0.560251905771;ZEB1:-0.562824792602;NKX2-1,4:-0.568252746797;SNAI1..3:-0.587161846609;DMAP1_NCOR{1,2}_SMARC:-0.595432100476;ATF2:-0.61732760979;FOXP3:-0.619414214028;ATF4:-0.637243930958;OCT4_SOX2{dimer}:-0.653870222501;PAX6:-0.660639630581;NR6A1:-0.664765395664;SREBF1,2:-0.688848279602;HOXA9_MEIS1:-0.71148669743;FOXN1:-0.718584370106;IKZF2:-0.730225920179;T:-0.73934196567;HOX{A6,A7,B6,B7}:-0.74738599425;IRF1,2:-0.762283850606;MYOD1:-0.766017787633;PITX1..3:-0.770470596635;FOXD3:-0.829360030911;NKX6-1,2:-0.830027491406;CUX2:-0.834711440457;IRF7:-0.846702400398;E2F1..5:-0.896074635382;PAX4:-0.903870729391;FOXA2:-0.908727726333;PDX1:-0.913120190617;FOXO1,3,4:-0.915089736795;BPTF:-0.91922438178;RFX2..5_RFXANK_RFXAP:-0.939590860792;NFY{A,B,C}:-0.988808988078;BREu{core}:-1.05555527451;STAT1,3:-1.10212059942;ZBTB16:-1.14157535486;FOXP1:-1.16892142254;CDX1,2,4:-1.26234617592;RBPJ:-1.27085314252
|top_motifs=GTF2A1,2:1.68901389041;PPARG:1.59680280157;HES1:1.42240566766;ALX4:1.37870629012;GCM1,2:1.31082007168;TFCP2:1.28034848445;SRF:1.27650379009;NFE2L1:1.21414020288;HOX{A5,B5}:1.18642020997;NFATC1..3:1.11307246573;ZBTB6:1.10869438157;HIF1A:1.08624616863;TFAP4:1.06074887671;GLI1..3:1.04009749807;HMX1:1.03386536683;ZIC1..3:1.03136861894;ZNF238:1.03113909429;EBF1:0.983439205664;MAFB:0.96685724127;IKZF1:0.955934063997;TLX1..3_NFIC{dimer}:0.951594712793;ZNF148:0.929889233444;ONECUT1,2:0.912720706221;TBX4,5:0.900887379821;ZNF423:0.860884721056;EN1,2:0.855339333353;TFAP2{A,C}:0.848803888654;NKX2-2,8:0.834970449565;CRX:0.809437276502;LHX3,4:0.804688288984;TAL1_TCF{3,4,12}:0.741630838535;SMAD1..7,9:0.723000273971;TP53:0.716644572205;NKX3-1:0.703836124948;NANOG{mouse}:0.702259341841;FOX{I1,J2}:0.673496140344;ATF6:0.6535125881;VSX1,2:0.636947863434;SOX17:0.636546291219;PAX5:0.617403099631;TEAD1:0.602378593736;POU3F1..4:0.586707468807;PAX1,9:0.563931252517;SPZ1:0.554544960484;ARID5B:0.534152408698;TBP:0.52685551981;KLF4:0.50051732044;NFE2L2:0.476106816089;HMGA1,2:0.475797967637;REST:0.464581251256;EVI1:0.459698928179;CDC5L:0.459471269188;HSF1,2:0.452797396418;XBP1:0.43043587965;BACH2:0.422276582375;STAT5{A,B}:0.419581602252;HAND1,2:0.416376412385;XCPE1{core}:0.40065751112;FOSL2:0.388705072851;GTF2I:0.387559451943;FOS_FOS{B,L1}_JUN{B,D}:0.384329533416;POU1F1:0.383492669563;LEF1_TCF7_TCF7L1,2:0.380392360405;POU2F1..3:0.375281383125;UFEwm:0.357883525451;MTE{core}:0.356861315421;NFIL3:0.353148211416;ELK1,4_GABP{A,B1}:0.307248924595;AR:0.305628931631;AHR_ARNT_ARNT2:0.291954465664;GZF1:0.289314062365;HLF:0.289035347759;POU6F1:0.287400959758;ZNF384:0.284024916154;PRDM1:0.273604494494;JUN:0.26633588367;PATZ1:0.264756474327;SOX{8,9,10}:0.261216323197;NKX3-2:0.260629437703;NR3C1:0.242135415017;TFAP2B:0.236765049976;MZF1:0.221783004113;MAZ:0.208362372595;HIC1:0.205585407818;FOXL1:0.197059003524;MYFfamily:0.19419508387;PBX1:0.191743597552;MYBL2:0.183974452484;CEBPA,B_DDIT3:0.179959360463;GATA4:0.172238593501;GFI1B:0.162552904046;FOXQ1:0.15174345007;RXR{A,B,G}:0.145322825607;PRRX1,2:0.125840237611;HNF1A:0.125350758503;NHLH1,2:0.122184305626;NR1H4:0.110228849802;ESR1:0.10453695999;MEF2{A,B,C,D}:0.100996652276;ADNP_IRX_SIX_ZHX:0.0870226698974;ALX1:0.0737122747272;PAX8:0.0731823874031;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0717165083441;NFE2:0.0334049085001;NFKB1_REL_RELA:-0.00517432406802;ETS1,2:-0.0382745565966;SOX2:-0.0395052965767;YY1:-0.0582017945675;bHLH_family:-0.0648573030063;ZFP161:-0.0889737823534;SP1:-0.0958810721264;TLX2:-0.110996746838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12467045729;RFX1:-0.126688919191;NFIX:-0.138478758338;MTF1:-0.140544903947;DBP:-0.144575695478;ELF1,2,4:-0.147800264207;PAX3,7:-0.195674646357;FOXM1:-0.203834310826;NANOG:-0.209681334858;ZNF143:-0.211424611444;GFI1:-0.215086525213;PAX2:-0.216290964562;GATA6:-0.217641996947;RUNX1..3:-0.219651945852;RREB1:-0.235159796255;NRF1:-0.238938239863;MED-1{core}:-0.256846556723;POU5F1:-0.261488355745;SPIB:-0.278918566087;EGR1..3:-0.294141787632;AIRE:-0.307764684007;TEF:-0.311126341129;STAT2,4,6:-0.314675794825;RXRA_VDR{dimer}:-0.316879409459;NR5A1,2:-0.319819331716;EP300:-0.33593581795;HBP1_HMGB_SSRP1_UBTF:-0.337151801075;TGIF1:-0.337622004951;ESRRA:-0.339888949766;SPI1:-0.344209699948;NKX2-3_NKX2-5:-0.348682624827;MYB:-0.358999945258;HNF4A_NR2F1,2:-0.366784422531;TFDP1:-0.367163640774;SOX5:-0.367642959697;TOPORS:-0.42801836061;LMO2:-0.484589084519;ATF5_CREB3:-0.50061062129;FOX{D1,D2}:-0.516287014978;HOX{A4,D4}:-0.532406519347;RORA:-0.546415305325;CREB1:-0.551495848324;FOX{F1,F2,J1}:-0.560251905771;ZEB1:-0.562824792602;NKX2-1,4:-0.568252746797;SNAI1..3:-0.587161846609;DMAP1_NCOR{1,2}_SMARC:-0.595432100476;ATF2:-0.61732760979;FOXP3:-0.619414214028;ATF4:-0.637243930958;OCT4_SOX2{dimer}:-0.653870222501;PAX6:-0.660639630581;NR6A1:-0.664765395664;SREBF1,2:-0.688848279602;HOXA9_MEIS1:-0.71148669743;FOXN1:-0.718584370106;IKZF2:-0.730225920179;T:-0.73934196567;HOX{A6,A7,B6,B7}:-0.74738599425;IRF1,2:-0.762283850606;MYOD1:-0.766017787633;PITX1..3:-0.770470596635;FOXD3:-0.829360030911;NKX6-1,2:-0.830027491406;CUX2:-0.834711440457;IRF7:-0.846702400398;E2F1..5:-0.896074635382;PAX4:-0.903870729391;FOXA2:-0.908727726333;PDX1:-0.913120190617;FOXO1,3,4:-0.915089736795;BPTF:-0.91922438178;RFX2..5_RFXANK_RFXAP:-0.939590860792;NFY{A,B,C}:-0.988808988078;BREu{core}:-1.05555527451;STAT1,3:-1.10212059942;ZBTB16:-1.14157535486;FOXP1:-1.16892142254;CDX1,2,4:-1.26234617592;RBPJ:-1.27085314252
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11284-116I6;search_select_hide=table117:FF:11284-116I6
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Smooth Muscle Cells - Brachiocephalic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11086
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrachiocephalic artery
dev stageNA
sexunknown
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2463
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005265
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11086 CAGE DRX008472 DRR009344
Accession ID Hg19

Library idBAMCTSS
CNhs11086 DRZ000769 DRZ002154
Accession ID Hg38

Library idBAMCTSS
CNhs11086 DRZ012119 DRZ013504
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005265
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GTAGAG sRNA-Seq DRX037158 DRR041524
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GTAGAG DRZ007166


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.219
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.324
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.361
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.293
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.69
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.455
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.285
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0802
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.325
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.35
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0738
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.556
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0738
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.721
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.034
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.325
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.361
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11086

Jaspar motifP-value
MA0002.20.451
MA0003.10.23
MA0004.10.259
MA0006.10.149
MA0007.10.909
MA0009.10.41
MA0014.10.747
MA0017.10.696
MA0018.20.00156
MA0019.10.171
MA0024.13.2845e-9
MA0025.10.798
MA0027.10.625
MA0028.10.526
MA0029.10.302
MA0030.10.598
MA0031.10.104
MA0035.20.369
MA0038.10.0485
MA0039.20.409
MA0040.10.35
MA0041.10.284
MA0042.10.692
MA0043.10.0478
MA0046.10.738
MA0047.20.299
MA0048.10.309
MA0050.12.10305e-6
MA0051.10.0173
MA0052.10.958
MA0055.10.899
MA0057.10.291
MA0058.10.103
MA0059.10.528
MA0060.18.38906e-6
MA0061.10.615
MA0062.20.0385
MA0065.20.762
MA0066.10.214
MA0067.10.00367
MA0068.10.914
MA0069.10.243
MA0070.10.765
MA0071.10.947
MA0072.10.645
MA0073.10.823
MA0074.10.411
MA0076.10.339
MA0077.10.0181
MA0078.10.0564
MA0079.20.451
MA0080.20.00178
MA0081.10.152
MA0083.14.58892e-6
MA0084.10.303
MA0087.10.324
MA0088.10.488
MA0090.10.00243
MA0091.10.193
MA0092.10.123
MA0093.10.265
MA0099.25.56335e-12
MA0100.10.13
MA0101.10.623
MA0102.20.242
MA0103.10.115
MA0104.20.201
MA0105.10.479
MA0106.10.118
MA0107.10.542
MA0108.23.83048e-4
MA0111.10.0184
MA0112.20.0222
MA0113.10.936
MA0114.10.798
MA0115.10.459
MA0116.10.38
MA0117.10.508
MA0119.10.195
MA0122.10.799
MA0124.10.744
MA0125.10.977
MA0131.10.558
MA0135.10.931
MA0136.10.0742
MA0137.20.122
MA0138.20.597
MA0139.10.785
MA0140.10.706
MA0141.10.452
MA0142.10.963
MA0143.10.786
MA0144.10.633
MA0145.10.168
MA0146.10.48
MA0147.10.537
MA0148.10.319
MA0149.10.972
MA0150.10.261
MA0152.10.281
MA0153.10.768
MA0154.10.256
MA0155.10.0292
MA0156.10.746
MA0157.10.547
MA0159.10.421
MA0160.10.868
MA0162.10.0354
MA0163.10.0113
MA0164.10.555
MA0258.10.182
MA0259.10.615



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11086

Novel motifP-value
10.811
100.326
1000.496
1010.731
1020.79
1030.196
1040.406
1050.967
1060.0173
1070.0311
1080.842
1090.127
110.109
1100.325
1110.871
1120.704
1130.109
1140.157
1150.306
1160.052
1170.789
1180.992
1190.537
120.797
1200.16
1210.783
1220.849
1230.014
1240.602
1250.294
1260.743
1270.636
1280.0891
1290.995
130.538
1300.303
1310.185
1320.774
1330.725
1340.177
1350.0133
1360.991
1370.502
1380.21
1390.174
140.582
1400.845
1410.233
1420.704
1430.00659
1440.752
1450.142
1460.845
1470.127
1480.834
1490.0111
150.69
1500.153
1510.468
1520.00939
1530.925
1540.769
1550.0853
1560.868
1570.786
1580.0129
1590.33
160.193
1600.145
1610.756
1620.796
1630.996
1640.46
1650.439
1660.554
1670.624
1680.433
1690.0867
170.257
180.0599
190.0519
20.193
200.36
210.369
220.188
230.0534
240.204
250.376
260.468
270.635
280.164
290.547
30.586
300.339
310.561
325.07616e-5
330.865
340.286
350.514
360.354
370.0978
380.813
390.301
40.703
400.626
410.553
420.711
430.324
440.437
450.188
460.167
470.61
480.379
490.817
50.675
500.335
510.813
520.691
530.48
540.462
550.272
560.551
570.614
580.698
590.0824
60.922
600.645
610.774
620.75
630.162
640.87
650.247
660.964
670.257
680.451
690.794
70.761
700.0502
710.353
720.802
730.00626
740.864
750.527
760.881
770.00603
780.925
790.0584
80.213
800.316
810.547
820.478
830.694
840.862
850.033
860.368
870.0163
880.0604
890.0322
90.206
900.563
910.717
920.36
930.974
940.744
950.253
960.908
970.569
980.689
990.00524



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11086


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002589 (smooth muscle cell of the brachiocephalic vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001529 (brachiocephalic artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0007204 (brachiocephalic vasculature)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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