FF:11320-117D6: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005674 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005674 | ||
|accession_numbers=CAGE;DRX008484;DRR009356;DRZ000781;DRZ002166;DRZ012131;DRZ013516 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037181;DRR041547;DRZ007189 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000180,FF:0000181 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11320-117D6 | |id=FF:11320-117D6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000181 | ||
|is_obsolete= | |||
|library_id=CNhs11963 | |||
|library_id_phase_based=2:CNhs11963 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11320 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GAGTGG.11320 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11320 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GAGTGG.11320 | |||
|name=Smooth Muscle Cells - Colonic, donor2 | |name=Smooth Muscle Cells - Colonic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11963,LSID836,release011,COMPLETED | |profile_hcage=CNhs11963,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0526762288773065,0,0,0,0,0.10061419435562,0,0.103063753237981,0.060176917110799,0,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0,0.269467382335962,0,0,0,0,0,0.0073945614865552,0,0,0.0571155916028128,0,0,0,0,0,0,0,0,0,0,0,0,0.301676241891054,0.0577153470936939,0.105352457754613,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.190072181381675,0,0.0298256849299113,0,0.00836009651200759,0,0,0.163588597228909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00539429030043792,0.0950360906908375,0,0,0.00267174555054783,0.000197793646326244,0,0.321836143995524,0,0.105352457754613,0.0073171065169063,0.147021238790034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034092518298542,0,0,0,0.135086974257809,0.216465897243263,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0073171065169063,0,0.105352457754613,0,0,0,0.190072181381675,0,0,0.321836143995524,0,0,0.128061236609465,0.0472760594292153,-0.213153994310002,-0.143515142523472,0,0,0.0798685939479559,0,0,0,0,0,0,0,0,0,0.376527156667532,0,-0.0504125515893149,0.0526762288773065,0,0,0,0.0526762288773065,0.016363913097117,0,-0.0437919489285067,0.121727920304307,0,0,0,0,-0.056646368459256,0,-0.120879483793741,0.107352013058258,0.182138301839009,0.042404008396244,-0.055712496781182,0,0,0,0.141528722033264,0.0890037991237245,0,0,-0.0691036228745675,-0.0863135278698215,0,0,0.634621518417376,0,0.146209217435835,0.0984915521186333,0,0.025161361691257,0,0,0,0,0,0,0,0,0,0,0,0.355748116986374,-0.221636138924356,0,0,0.105352457754613,0,-0.293030223612106,0,0,0.230929885238728,0.0245040985981705,0.029077567300563,-0.111900927937243,0,0.120400665674477,0.011732392372851,0.273217181947325,-0.104165034538177,0.275388543313251,0.185258392345182,0,0.0741159928933248,-0.153365649159118,-0.0966116299309906,-0.108539686609783,-0.0152012844463377,0.0177105388069954,-0.241321746196853,0,0,0.0759262724206985,-0.224710035764189,0,0,0.114101326718521,0.0761923520716249,0.10237995698834,-0.119335783706914,0.0070695005736092,0.0697119150418091,0.373709055351139,-0.196504228454589,0,0.479483983174704,0,0.190072181381675,0,-0.0420118584407915,-0.126092718306808,-0.193035780494289,0,0.0895173001845058,0.0370081966772445,0,0.114185708822399,0.00532299409263692,0,0,-0.113132809444167,0,0,0,0,0.105352457754613,0.0610570700902555,-0.349419961648491,0.0280766628864612,0,-0.0186073517786812,0.0480552055377449,-0.0449625685425383,0,-0.134839686927237,-0.146009897457394,-0.0678080576668055,0.00464136096155632,0,-0.0454147628164877,0.19894992102623,-0.0948304587478794,0.000395587292652488,0.0469056309427875,-0.264827512348486,-0.104164610555031,0.00267174555054783,0.149931798113938,0.0529710087255639,1.79082027188815,0,0.10702428823191,-0.304258019726495,-0.054935056686399,0.0755040634356162,0.054676433148022,0.0834032486746321,0,-0.252265627219126,0,0.09824397399767,0,-0.17835715013868,-0.199804538193694,0,-0.135484691621167,0.00539429030043792,0,0,0.0386043875763166,0,-0.0450146255800266,-0.0647889865576888,-0.211650427864589,-0.0863132278018883,0,0.00344506968475533,0,0.105352457754613,0.149984063909624,0.13976407413064,0,-0.0382768569059941,-0.143558492786151,0,-0.0106186156803213,0.190072181381675,0,0.01411905080779,0,0,-0.0324333018225439,0.171310403667582,-0.046288561963147,0.212318079940489,0,-0.0135867187634181,0,0,0.144308378030349,0,0.276718525020593,0,0,-0.0362869957237553,0,0,0,0,0,0.105352457754613,0,0,0,0,0,0.00912471390412315,-0.0560195257125138,-0.093901105774442,0,-0.0842086604845362,0,0,0,0.260932224442006,0,0,0,0.105352457754613,0.481394286933072,0.0600334708881277,0.252222696218609,0,0,0,0,-0.215723402553475,-0.097884104340111,0.105352457754613,-0.026510248743019,0,0,0,0,0.0192114679654014,0,0,0,0,0.365059935630726,0.109823187497943,0,0,0,0.188690019825455,0,0,0,0.00419928845805529,0.140151125231267,0,0,0.0278892154141348,0,0.0340282508613288,0.0237705782077713,0,-0.0085103252009252,0.379952761186501,-0.034426343657334,0,0.190072181381675,-0.261347131789888,0,0.22550220291184,0.0116369794203139,0,0.105352457754613,0,0,0,0,0,0,0,0.208475880284634,0,0,0,0,0,0,0,0,0,0,0,-0.110975386539216,0.0131284010961023,0,0,0,0,0,0,0,0.0285702057984033,-0.15159106144469,0.0950360906908375,0,0,0,0,0,0,0,-0.0961858277682129,0,0,0,0,0,0.00836009651200759,0,0,0,0.105352457754613,0.120353834221598,0,0,-0.087289950811839,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.103063753237981,0,0,0,0,0,0,0,0.298661463789396,0,0,0,0,-0.113884373708977,0,0,0,0.317994007895234,0,0.10061419435562,0,0,0,0,0,0.105352457754613,0,0,0,0,0,0,0,0,0,0,0,0.0950360906908375,0.0526762288773065,0,0,0.335469212717148,0.051051487215485,0.0712481116981228,0.0242815419394238,0,0,0.173518773721736,0,0,0,0,0,0,-0.031340424028527,0.101016238479071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0435497424126969,0,0,0,0,0,0,0,0.0073945614865552,0,0,-0.0920328098005262,0,0,0,0,0.143999814861806,0,0.234563546889959,0.0820325666043102,-0.00950265913423635,0,0,0,0.15700962385974,0.190072181381675,0,0.0262964671746877,0,0.123294793962774,0,0,0,0,0,0,0,0,0.260932224442006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269467382335962,0,0,0,0,0,0,0,0,0,0,0.0950360906908375,0,0.0526762288773065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0.0526762288773065,0,0,0.105352457754613,0,0,0,-0.0340113632754165,0.190072181381675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0253339894859743,0,0,0,-0.107733771902431,0,0,0,0,0,0,0.260932224442006,0,0.321836143995524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0301887550553654,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0.465644421427245,0,0,0,0,0,0,0,0,0.105352457754613,0,0,0,0,0.181293558894521,0,0,0,0,0.0577153470936939,0,0,0,0,0,0,0.375240111895029,-0.0347522689245468,0,0,0.105352457754613,0,0,0,0,0,0,0,0,0,0,0.0682255357070193,0,0,0.562149705491614,0,0,0.0522629511119565,0,0,0,0,0,0,0,0,0,0.128752002231549,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.375240111895029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152601511699422,0.216465897243263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0322300609918632,0,0,0,0,0,0,0,0,0.0526762288773065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0229793065046306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887085677212847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0681850365970841,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0,0.105352457754613,0,0,0,0,0,0,0.0950360906908375,0,0,0,0,0,0,0,0,0.0526762288773065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0,0,0.0303836416610075,0,0,0,0,0,0,0,0.199140146998523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0.190072181381675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187620055947514,0,0,0,0.181190225777028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163588597228909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0571155916028128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0450981081692512,0.0526762288773065,0,0,0,0,0,0,0,0,0,0.119667980469955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1494692086415,0,0,-0.0422874684771159,0,0.134950670918288,0.0397652917314258,0,0,0,0,0,0.0959896064571825,0,0,0,0,0,0,0,0,0,0,0.0652762100300812,0,0,0.0103738171442496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.174719637568353,0,0.0690463780280385,-0.20700250714034,0,0,0.118195449668139,0,0.105352457754613,0,0,0,-0.0696404373356863,-0.120164284861873,0.105352457754613,0,0,0,0,0,0,0,0,0,0,0.105352457754613,0,0,0.0526762288773065,0,0.190072181381675,0,0.0484935115920136,0.334740405600725,0.321836143995524,-0.117904029908418,0,0,-0.0626981530591282,0,0,0,0.0941127740080882 | |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC2945 | |rna_catalog_number=SC2945 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D6 | |rna_tube_id=117D6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.GAGTGG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.53144586360929e-234!GO:0005737;cytoplasm;5.34487184284704e-205!GO:0043226;organelle;1.29524083570475e-181!GO:0043229;intracellular organelle;2.66197588885199e-181!GO:0043231;intracellular membrane-bound organelle;4.67649409315905e-181!GO:0043227;membrane-bound organelle;6.23782956210227e-181!GO:0044444;cytoplasmic part;6.02230581299495e-151!GO:0044422;organelle part;7.4231280757728e-145!GO:0044446;intracellular organelle part;4.39286812006921e-143!GO:0032991;macromolecular complex;6.98969296430427e-97!GO:0044237;cellular metabolic process;2.33318821509184e-89!GO:0044238;primary metabolic process;5.59561243045034e-89!GO:0030529;ribonucleoprotein complex;8.30015439759266e-86!GO:0043170;macromolecule metabolic process;4.37970730386877e-76!GO:0005739;mitochondrion;3.39954244317074e-73!GO:0005515;protein binding;4.21011919536823e-73!GO:0043233;organelle lumen;4.23231169926012e-70!GO:0031974;membrane-enclosed lumen;4.23231169926012e-70!GO:0044428;nuclear part;3.12269792457141e-65!GO:0003723;RNA binding;6.1642580150339e-64!GO:0005634;nucleus;8.50424812586292e-59!GO:0031090;organelle membrane;1.47072533433218e-57!GO:0005840;ribosome;1.07189193231478e-54!GO:0019538;protein metabolic process;2.09821136419706e-54!GO:0006412;translation;1.30143292238903e-49!GO:0044260;cellular macromolecule metabolic process;4.28706840254834e-49!GO:0044429;mitochondrial part;1.21570896891913e-48!GO:0016043;cellular component organization and biogenesis;1.31564756897912e-48!GO:0009058;biosynthetic process;2.41199086316145e-48!GO:0043234;protein complex;3.63518303050279e-48!GO:0044267;cellular protein metabolic process;6.77421550565647e-48!GO:0003735;structural constituent of ribosome;9.48658692603132e-48!GO:0031967;organelle envelope;6.76771739012521e-45!GO:0015031;protein transport;6.81889757653058e-45!GO:0031975;envelope;1.16311519273442e-44!GO:0033036;macromolecule localization;4.14343418303938e-44!GO:0044249;cellular biosynthetic process;7.59825483592272e-43!GO:0006396;RNA processing;2.80534031725959e-42!GO:0045184;establishment of protein localization;3.24150034576647e-41!GO:0008104;protein localization;5.80362808473003e-41!GO:0033279;ribosomal subunit;6.03463047098814e-41!GO:0009059;macromolecule biosynthetic process;2.95968416901797e-40!GO:0005829;cytosol;8.20842612369478e-40!GO:0031981;nuclear lumen;1.55654362260522e-37!GO:0046907;intracellular transport;2.89517913441651e-37!GO:0043283;biopolymer metabolic process;2.10976014376721e-36!GO:0016071;mRNA metabolic process;3.46201356983578e-35!GO:0008380;RNA splicing;1.35742933226995e-32!GO:0065003;macromolecular complex assembly;1.72433060089271e-32!GO:0010467;gene expression;4.43454888655173e-32!GO:0005740;mitochondrial envelope;2.75787365153652e-31!GO:0006996;organelle organization and biogenesis;1.92450024470907e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.06562164845251e-30!GO:0006886;intracellular protein transport;2.38540908054495e-30!GO:0006397;mRNA processing;4.02383900708731e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.62955616108217e-30!GO:0031966;mitochondrial membrane;1.21504698693721e-29!GO:0019866;organelle inner membrane;1.99762979365563e-29!GO:0022607;cellular component assembly;2.52128954849059e-29!GO:0043228;non-membrane-bound organelle;2.96072517582602e-29!GO:0043232;intracellular non-membrane-bound organelle;2.96072517582602e-29!GO:0005743;mitochondrial inner membrane;2.12918007662018e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.4855886072793e-26!GO:0012505;endomembrane system;8.47771113543164e-26!GO:0005783;endoplasmic reticulum;7.85066065129581e-25!GO:0051649;establishment of cellular localization;2.31544667827e-24!GO:0044445;cytosolic part;3.78624641592958e-24!GO:0051641;cellular localization;4.2209152979017e-24!GO:0006119;oxidative phosphorylation;1.0908406653274e-23!GO:0005654;nucleoplasm;1.59256170340263e-23!GO:0005681;spliceosome;4.86242295671999e-23!GO:0006259;DNA metabolic process;7.00878358377051e-23!GO:0015934;large ribosomal subunit;3.12494994369308e-22!GO:0000166;nucleotide binding;4.22364345336512e-22!GO:0044455;mitochondrial membrane part;1.45699580676833e-21!GO:0031980;mitochondrial lumen;1.46154359272658e-21!GO:0005759;mitochondrial matrix;1.46154359272658e-21!GO:0006457;protein folding;1.71658621260987e-21!GO:0007049;cell cycle;7.45933830390272e-20!GO:0015935;small ribosomal subunit;8.83667569934907e-20!GO:0048770;pigment granule;9.46762216335594e-20!GO:0042470;melanosome;9.46762216335594e-20!GO:0044432;endoplasmic reticulum part;1.06112540600931e-19!GO:0044451;nucleoplasm part;2.7485519765892e-19!GO:0005746;mitochondrial respiratory chain;1.60776033601734e-18!GO:0016462;pyrophosphatase activity;2.90482587614516e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.30928108734554e-18!GO:0005794;Golgi apparatus;3.92460876545438e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;4.88490899701812e-18!GO:0051186;cofactor metabolic process;1.57750504746644e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.55941561376394e-17!GO:0017111;nucleoside-triphosphatase activity;2.6443644898984e-17!GO:0022618;protein-RNA complex assembly;3.28216244056037e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.62620989678444e-16!GO:0003954;NADH dehydrogenase activity;3.62620989678444e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.62620989678444e-16!GO:0043285;biopolymer catabolic process;6.25716658270799e-16!GO:0016874;ligase activity;6.65950239133372e-16!GO:0048193;Golgi vesicle transport;8.00796266171068e-16!GO:0005761;mitochondrial ribosome;9.17743947131308e-16!GO:0000313;organellar ribosome;9.17743947131308e-16!GO:0044248;cellular catabolic process;9.78333296543384e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.57524851644369e-15!GO:0044265;cellular macromolecule catabolic process;1.5960001388839e-15!GO:0006605;protein targeting;1.81554009872222e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.31669303342964e-15!GO:0032553;ribonucleotide binding;2.43611138631193e-15!GO:0032555;purine ribonucleotide binding;2.43611138631193e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.78095458634362e-15!GO:0003676;nucleic acid binding;3.11214002383471e-15!GO:0017076;purine nucleotide binding;4.0985415104483e-15!GO:0019941;modification-dependent protein catabolic process;5.57619078486886e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.57619078486886e-15!GO:0022402;cell cycle process;5.67062716992057e-15!GO:0044257;cellular protein catabolic process;6.27731210209371e-15!GO:0008135;translation factor activity, nucleic acid binding;8.71337450149976e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.73034096252283e-15!GO:0009057;macromolecule catabolic process;9.99318043808113e-15!GO:0030163;protein catabolic process;1.53066044721361e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.69720397729668e-14!GO:0042773;ATP synthesis coupled electron transport;1.69720397729668e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.28300269613827e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.5721746477152e-14!GO:0008134;transcription factor binding;2.58397160398878e-14!GO:0051082;unfolded protein binding;2.58397160398878e-14!GO:0016192;vesicle-mediated transport;2.66324270814108e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.82328499413132e-14!GO:0045271;respiratory chain complex I;2.82328499413132e-14!GO:0005747;mitochondrial respiratory chain complex I;2.82328499413132e-14!GO:0005730;nucleolus;2.89626931008336e-14!GO:0005635;nuclear envelope;3.04500042898867e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.31912392654859e-14!GO:0006512;ubiquitin cycle;4.01841336778402e-14!GO:0000278;mitotic cell cycle;6.37348009589899e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.23207923630959e-14!GO:0006732;coenzyme metabolic process;1.12913981479063e-13!GO:0005789;endoplasmic reticulum membrane;1.12913981479063e-13!GO:0006974;response to DNA damage stimulus;4.62048064420013e-13!GO:0009055;electron carrier activity;7.14580402477545e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.5381776634048e-12!GO:0000375;RNA splicing, via transesterification reactions;1.5381776634048e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.5381776634048e-12!GO:0031965;nuclear membrane;1.88382231162447e-12!GO:0005793;ER-Golgi intermediate compartment;1.92505137834301e-12!GO:0005524;ATP binding;2.1233244460337e-12!GO:0032559;adenyl ribonucleotide binding;2.13746444479672e-12!GO:0043412;biopolymer modification;3.91989108394709e-12!GO:0030554;adenyl nucleotide binding;4.98159465310678e-12!GO:0016070;RNA metabolic process;1.72916959886615e-11!GO:0003743;translation initiation factor activity;2.00559740400332e-11!GO:0044453;nuclear membrane part;4.17179203220783e-11!GO:0006464;protein modification process;4.35637685147304e-11!GO:0009259;ribonucleotide metabolic process;7.32692984174858e-11!GO:0005694;chromosome;8.03656577037183e-11!GO:0006913;nucleocytoplasmic transport;1.24055872104321e-10!GO:0042254;ribosome biogenesis and assembly;1.35874781741668e-10!GO:0006163;purine nucleotide metabolic process;1.70157414563242e-10!GO:0016491;oxidoreductase activity;1.82655093471263e-10!GO:0008565;protein transporter activity;2.09163184496056e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.16863929280877e-10!GO:0009056;catabolic process;2.47949724412146e-10!GO:0016604;nuclear body;2.55492603303005e-10!GO:0051169;nuclear transport;2.78616345826989e-10!GO:0006281;DNA repair;3.2937775932233e-10!GO:0012501;programmed cell death;3.32714523352319e-10!GO:0006413;translational initiation;3.45037503234482e-10!GO:0009150;purine ribonucleotide metabolic process;3.5282659168245e-10!GO:0051276;chromosome organization and biogenesis;3.65748515087137e-10!GO:0044427;chromosomal part;4.26935613419061e-10!GO:0006461;protein complex assembly;6.13317758769211e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.51682294604581e-10!GO:0009719;response to endogenous stimulus;7.22718826486692e-10!GO:0006915;apoptosis;7.22718826486692e-10!GO:0051301;cell division;8.19686758470977e-10!GO:0006446;regulation of translational initiation;8.24039642926004e-10!GO:0000074;regulation of progression through cell cycle;8.84904020959298e-10!GO:0006164;purine nucleotide biosynthetic process;9.62933363191073e-10!GO:0051726;regulation of cell cycle;1.07150683933205e-09!GO:0009260;ribonucleotide biosynthetic process;1.31884048888341e-09!GO:0022403;cell cycle phase;1.34234842679602e-09!GO:0000087;M phase of mitotic cell cycle;1.47153218981701e-09!GO:0007067;mitosis;1.92175133333119e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.97491803926783e-09!GO:0003712;transcription cofactor activity;2.01093320101615e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.05306027283184e-09!GO:0008219;cell death;2.19927081218452e-09!GO:0016265;death;2.19927081218452e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.40233314852884e-09!GO:0043687;post-translational protein modification;2.52774978779523e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.28061367011617e-09!GO:0009141;nucleoside triphosphate metabolic process;3.28061367011617e-09!GO:0009060;aerobic respiration;3.30311417278855e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.30311417278855e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.30311417278855e-09!GO:0065004;protein-DNA complex assembly;4.00858775511865e-09!GO:0045333;cellular respiration;4.16723337945844e-09!GO:0048523;negative regulation of cellular process;4.90522221195633e-09!GO:0009117;nucleotide metabolic process;5.3503583839181e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.67745436104688e-09!GO:0008639;small protein conjugating enzyme activity;6.15589148088019e-09!GO:0017038;protein import;6.37403244601801e-09!GO:0051188;cofactor biosynthetic process;7.4282586812288e-09!GO:0006323;DNA packaging;7.7021274992361e-09!GO:0042623;ATPase activity, coupled;8.21727488987869e-09!GO:0004842;ubiquitin-protein ligase activity;1.00379761992729e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.00379761992729e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.00379761992729e-08!GO:0016887;ATPase activity;1.14770977646531e-08!GO:0065002;intracellular protein transport across a membrane;1.43525956866954e-08!GO:0006399;tRNA metabolic process;1.51283728220395e-08!GO:0015986;ATP synthesis coupled proton transport;1.57889032613496e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.57889032613496e-08!GO:0019787;small conjugating protein ligase activity;1.59935059470694e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.6405686271519e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.6405686271519e-08!GO:0005788;endoplasmic reticulum lumen;1.76776502659974e-08!GO:0016607;nuclear speck;1.93212618279562e-08!GO:0005643;nuclear pore;2.09068349965975e-08!GO:0006260;DNA replication;2.37316180588843e-08!GO:0030120;vesicle coat;2.58397459654936e-08!GO:0030662;coated vesicle membrane;2.58397459654936e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.87934744299946e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.29966989866095e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.29966989866095e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.29966989866095e-08!GO:0019829;cation-transporting ATPase activity;4.69970146178517e-08!GO:0004386;helicase activity;4.80517159937327e-08!GO:0046034;ATP metabolic process;5.84380108076289e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.44961576432064e-08!GO:0048475;coated membrane;6.95414318312562e-08!GO:0030117;membrane coat;6.95414318312562e-08!GO:0043038;amino acid activation;6.95414318312562e-08!GO:0006418;tRNA aminoacylation for protein translation;6.95414318312562e-08!GO:0043039;tRNA aminoacylation;6.95414318312562e-08!GO:0006099;tricarboxylic acid cycle;9.30792200299926e-08!GO:0046356;acetyl-CoA catabolic process;9.30792200299926e-08!GO:0006333;chromatin assembly or disassembly;9.45621694383076e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.46263502625297e-08!GO:0046930;pore complex;1.50819152308202e-07!GO:0051187;cofactor catabolic process;1.51877186397011e-07!GO:0044431;Golgi apparatus part;1.52288256542312e-07!GO:0016881;acid-amino acid ligase activity;1.85061783984126e-07!GO:0000785;chromatin;1.92076462690612e-07!GO:0051246;regulation of protein metabolic process;2.14001903941531e-07!GO:0003924;GTPase activity;2.36278368075463e-07!GO:0009109;coenzyme catabolic process;2.44667980522883e-07!GO:0008026;ATP-dependent helicase activity;2.46626441157879e-07!GO:0048519;negative regulation of biological process;2.48655216462049e-07!GO:0006754;ATP biosynthetic process;2.64755705844072e-07!GO:0006753;nucleoside phosphate metabolic process;2.64755705844072e-07!GO:0005768;endosome;2.6667112071975e-07!GO:0006084;acetyl-CoA metabolic process;3.20884278381153e-07!GO:0016853;isomerase activity;3.36209161152226e-07!GO:0006091;generation of precursor metabolites and energy;4.11216069306786e-07!GO:0007005;mitochondrion organization and biogenesis;4.63852168421251e-07!GO:0016787;hydrolase activity;5.26001485784894e-07!GO:0009108;coenzyme biosynthetic process;5.56447623320316e-07!GO:0000279;M phase;5.92052840115278e-07!GO:0015630;microtubule cytoskeleton;5.98873415509157e-07!GO:0050657;nucleic acid transport;5.98873415509157e-07!GO:0051236;establishment of RNA localization;5.98873415509157e-07!GO:0050658;RNA transport;5.98873415509157e-07!GO:0006403;RNA localization;6.11992071567551e-07!GO:0031988;membrane-bound vesicle;6.72377045353585e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.49566125197738e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.14736358460848e-07!GO:0006366;transcription from RNA polymerase II promoter;9.40835144099536e-07!GO:0006364;rRNA processing;1.18687837504925e-06!GO:0006334;nucleosome assembly;1.25620557210016e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.31639404261628e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.3175767102918e-06!GO:0006793;phosphorus metabolic process;1.3829877033732e-06!GO:0006796;phosphate metabolic process;1.3829877033732e-06!GO:0003697;single-stranded DNA binding;1.61274685002718e-06!GO:0031252;leading edge;1.63696458728855e-06!GO:0016740;transferase activity;1.74166047121212e-06!GO:0045259;proton-transporting ATP synthase complex;1.81841078437151e-06!GO:0031982;vesicle;1.91370277661856e-06!GO:0043067;regulation of programmed cell death;2.0572360152244e-06!GO:0006752;group transfer coenzyme metabolic process;2.19982207197918e-06!GO:0051170;nuclear import;2.21056441382555e-06!GO:0042981;regulation of apoptosis;2.29789457105894e-06!GO:0005762;mitochondrial large ribosomal subunit;2.30883631187575e-06!GO:0000315;organellar large ribosomal subunit;2.30883631187575e-06!GO:0043069;negative regulation of programmed cell death;2.36221317771291e-06!GO:0016310;phosphorylation;2.40171192245434e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.50093148974048e-06!GO:0016072;rRNA metabolic process;2.63755960053238e-06!GO:0031410;cytoplasmic vesicle;2.69162662692139e-06!GO:0016859;cis-trans isomerase activity;2.86663127920882e-06!GO:0045786;negative regulation of progression through cell cycle;3.0011667483237e-06!GO:0043566;structure-specific DNA binding;3.4204466240239e-06!GO:0008654;phospholipid biosynthetic process;3.92773995464441e-06!GO:0043066;negative regulation of apoptosis;3.96164469479807e-06!GO:0050794;regulation of cellular process;4.14305222183357e-06!GO:0031497;chromatin assembly;4.15880540536237e-06!GO:0005798;Golgi-associated vesicle;4.44081262550326e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.63768499600459e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.88575360315398e-06!GO:0006606;protein import into nucleus;4.89857603784792e-06!GO:0032446;protein modification by small protein conjugation;5.4268834122913e-06!GO:0005770;late endosome;5.43040192943221e-06!GO:0000139;Golgi membrane;5.5457662758943e-06!GO:0000245;spliceosome assembly;5.71117875619248e-06!GO:0045454;cell redox homeostasis;6.71164758075694e-06!GO:0005773;vacuole;7.06877741170079e-06!GO:0043623;cellular protein complex assembly;8.30425878338975e-06!GO:0006613;cotranslational protein targeting to membrane;8.85583007123335e-06!GO:0016567;protein ubiquitination;9.08470120191978e-06!GO:0004298;threonine endopeptidase activity;9.3239613262658e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.09473970178381e-05!GO:0005791;rough endoplasmic reticulum;1.10317551033582e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.38771454489393e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.4007424492943e-05!GO:0016126;sterol biosynthetic process;1.4651344092443e-05!GO:0044440;endosomal part;1.49059512174011e-05!GO:0010008;endosome membrane;1.49059512174011e-05!GO:0005813;centrosome;1.65718898961359e-05!GO:0051028;mRNA transport;1.67804461571577e-05!GO:0006916;anti-apoptosis;1.84643327669659e-05!GO:0000151;ubiquitin ligase complex;1.89131889289145e-05!GO:0005667;transcription factor complex;2.00255950373088e-05!GO:0051329;interphase of mitotic cell cycle;2.10619293124659e-05!GO:0003714;transcription corepressor activity;2.15397964017305e-05!GO:0008610;lipid biosynthetic process;2.26972006634023e-05!GO:0003724;RNA helicase activity;2.53465515534753e-05!GO:0031324;negative regulation of cellular metabolic process;2.56733661027531e-05!GO:0005525;GTP binding;2.86272147154132e-05!GO:0031968;organelle outer membrane;3.00023556915813e-05!GO:0009165;nucleotide biosynthetic process;3.2416528474461e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.44809434086337e-05!GO:0005815;microtubule organizing center;4.14110024484278e-05!GO:0030867;rough endoplasmic reticulum membrane;4.19309635092925e-05!GO:0016568;chromatin modification;4.29572724225468e-05!GO:0019867;outer membrane;5.11069667495908e-05!GO:0051789;response to protein stimulus;5.35161216506531e-05!GO:0006986;response to unfolded protein;5.35161216506531e-05!GO:0016779;nucleotidyltransferase activity;5.74849946773771e-05!GO:0000323;lytic vacuole;6.63881412589883e-05!GO:0005764;lysosome;6.63881412589883e-05!GO:0030133;transport vesicle;7.15821802112763e-05!GO:0007010;cytoskeleton organization and biogenesis;7.24791442496159e-05!GO:0051325;interphase;7.53965320182599e-05!GO:0016564;transcription repressor activity;7.55700044791048e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.7669316289663e-05!GO:0006612;protein targeting to membrane;9.95676452179556e-05!GO:0032561;guanyl ribonucleotide binding;0.000103309816139294!GO:0019001;guanyl nucleotide binding;0.000103309816139294!GO:0000314;organellar small ribosomal subunit;0.000105966780760339!GO:0005763;mitochondrial small ribosomal subunit;0.000105966780760339!GO:0043021;ribonucleoprotein binding;0.000110886242319268!GO:0008361;regulation of cell size;0.000112850941322981!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000113612099695649!GO:0005819;spindle;0.000116959632225342!GO:0033116;ER-Golgi intermediate compartment membrane;0.000119463144281941!GO:0051427;hormone receptor binding;0.000122708642468086!GO:0003713;transcription coactivator activity;0.000131599114602113!GO:0050789;regulation of biological process;0.000169722874435202!GO:0005741;mitochondrial outer membrane;0.000172905440994219!GO:0030036;actin cytoskeleton organization and biogenesis;0.000173439675398056!GO:0016049;cell growth;0.000175505979412997!GO:0019899;enzyme binding;0.000183099790972924!GO:0006695;cholesterol biosynthetic process;0.000195814807040934!GO:0009892;negative regulation of metabolic process;0.000225634984818993!GO:0005048;signal sequence binding;0.000232192548918234!GO:0030663;COPI coated vesicle membrane;0.000232649904904844!GO:0030126;COPI vesicle coat;0.000232649904904844!GO:0005905;coated pit;0.000249075848622671!GO:0035257;nuclear hormone receptor binding;0.000251025060671754!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000306708814113569!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000312760116431506!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000316805835403327!GO:0008250;oligosaccharyl transferase complex;0.000328227118110001!GO:0006082;organic acid metabolic process;0.000328466421078425!GO:0019752;carboxylic acid metabolic process;0.000346474936920288!GO:0004576;oligosaccharyl transferase activity;0.000356105419155735!GO:0044262;cellular carbohydrate metabolic process;0.000363279860060301!GO:0046474;glycerophospholipid biosynthetic process;0.000371785763833975!GO:0001558;regulation of cell growth;0.000404876406875227!GO:0005885;Arp2/3 protein complex;0.000404921416746639!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000423042858267291!GO:0006626;protein targeting to mitochondrion;0.000437858877080962!GO:0005769;early endosome;0.000452728611460162!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000461881473082161!GO:0003899;DNA-directed RNA polymerase activity;0.000542226939746858!GO:0043681;protein import into mitochondrion;0.000576921911671283!GO:0016563;transcription activator activity;0.000587230371955777!GO:0030137;COPI-coated vesicle;0.000590308433982882!GO:0006891;intra-Golgi vesicle-mediated transport;0.00061435467339215!GO:0003729;mRNA binding;0.000664778854623343!GO:0043284;biopolymer biosynthetic process;0.000695727111620645!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000698091556718688!GO:0051920;peroxiredoxin activity;0.000760837446274075!GO:0051168;nuclear export;0.000778264654142765!GO:0018196;peptidyl-asparagine modification;0.000804733822646759!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000804733822646759!GO:0008186;RNA-dependent ATPase activity;0.000850434161289025!GO:0007051;spindle organization and biogenesis;0.000873058232301101!GO:0030029;actin filament-based process;0.000876322770509625!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000884338038139406!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000886741100233027!GO:0006414;translational elongation;0.000896144542187529!GO:0016481;negative regulation of transcription;0.00091831641487947!GO:0030027;lamellipodium;0.000919242854386796!GO:0006261;DNA-dependent DNA replication;0.000935961656360987!GO:0019843;rRNA binding;0.000948158000140675!GO:0006839;mitochondrial transport;0.000957167900244907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000998143027041131!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00100107389958613!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00100107389958613!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00100107389958613!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00122316263988568!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00148767210532973!GO:0046483;heterocycle metabolic process;0.00157216426911854!GO:0030659;cytoplasmic vesicle membrane;0.00169791463516005!GO:0016363;nuclear matrix;0.00170614182560196!GO:0006979;response to oxidative stress;0.00171916832217992!GO:0030176;integral to endoplasmic reticulum membrane;0.00172295720440491!GO:0046467;membrane lipid biosynthetic process;0.00177213286140453!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00183804902261788!GO:0015002;heme-copper terminal oxidase activity;0.00183804902261788!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00183804902261788!GO:0004129;cytochrome-c oxidase activity;0.00183804902261788!GO:0000075;cell cycle checkpoint;0.00186553410873341!GO:0048500;signal recognition particle;0.00188438040224077!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00194971074491762!GO:0001726;ruffle;0.0019534567561641!GO:0051252;regulation of RNA metabolic process;0.00197764315702134!GO:0042802;identical protein binding;0.00198271689137323!GO:0000059;protein import into nucleus, docking;0.00201069750404107!GO:0007243;protein kinase cascade;0.00204218771297771!GO:0030658;transport vesicle membrane;0.00206073881552397!GO:0003684;damaged DNA binding;0.00206666734480941!GO:0016125;sterol metabolic process;0.00209214385599458!GO:0007050;cell cycle arrest;0.00220763083382005!GO:0045045;secretory pathway;0.00227867771450083!GO:0007006;mitochondrial membrane organization and biogenesis;0.00228701682069321!GO:0003690;double-stranded DNA binding;0.00229400636101316!GO:0004004;ATP-dependent RNA helicase activity;0.00229400636101316!GO:0000786;nucleosome;0.00236684107558109!GO:0048522;positive regulation of cellular process;0.00239853358416526!GO:0016197;endosome transport;0.00240510388795693!GO:0015992;proton transport;0.00241294260661113!GO:0031072;heat shock protein binding;0.00253549020482991!GO:0006818;hydrogen transport;0.00270043813747639!GO:0006520;amino acid metabolic process;0.00270864565203341!GO:0030134;ER to Golgi transport vesicle;0.00277772707216288!GO:0005684;U2-dependent spliceosome;0.00283011580966456!GO:0004177;aminopeptidase activity;0.00290028111572486!GO:0016044;membrane organization and biogenesis;0.00317764718545315!GO:0006950;response to stress;0.00318690483222737!GO:0043488;regulation of mRNA stability;0.00326000471897672!GO:0043487;regulation of RNA stability;0.00326000471897672!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00327920995865293!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00328724859061429!GO:0015399;primary active transmembrane transporter activity;0.00328724859061429!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00332116352461142!GO:0046489;phosphoinositide biosynthetic process;0.00333509081487107!GO:0051287;NAD binding;0.00333884620605191!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00344346406464834!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00344346406464834!GO:0015631;tubulin binding;0.00357114076293223!GO:0044255;cellular lipid metabolic process;0.00364073435056459!GO:0008180;signalosome;0.00364073435056459!GO:0000775;chromosome, pericentric region;0.00416910535674176!GO:0048487;beta-tubulin binding;0.00417746342703941!GO:0030127;COPII vesicle coat;0.00427240533073779!GO:0012507;ER to Golgi transport vesicle membrane;0.00427240533073779!GO:0030132;clathrin coat of coated pit;0.00431363726998087!GO:0006383;transcription from RNA polymerase III promoter;0.00431583257044214!GO:0044433;cytoplasmic vesicle part;0.00436259097809259!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00462608622658508!GO:0045047;protein targeting to ER;0.00462608622658508!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00464330542437705!GO:0030118;clathrin coat;0.00472670261976252!GO:0006650;glycerophospholipid metabolic process;0.00472670261976252!GO:0005586;collagen type III;0.00486080033591346!GO:0009112;nucleobase metabolic process;0.00498369970501907!GO:0005657;replication fork;0.00504003239851697!GO:0031902;late endosome membrane;0.00523504007585065!GO:0016860;intramolecular oxidoreductase activity;0.00525237317344691!GO:0008312;7S RNA binding;0.00525237317344691!GO:0000082;G1/S transition of mitotic cell cycle;0.00526610534403314!GO:0065009;regulation of a molecular function;0.00528091500312704!GO:0035258;steroid hormone receptor binding;0.00528091500312704!GO:0006402;mRNA catabolic process;0.00554421971077314!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00555425356542311!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00569786781499542!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00577889967885119!GO:0022890;inorganic cation transmembrane transporter activity;0.00579747689891348!GO:0005637;nuclear inner membrane;0.0058193076101246!GO:0006595;polyamine metabolic process;0.00585282670221576!GO:0017166;vinculin binding;0.00589579961907565!GO:0048471;perinuclear region of cytoplasm;0.00591772591764473!GO:0012506;vesicle membrane;0.00594178089143471!GO:0030660;Golgi-associated vesicle membrane;0.00602511175926181!GO:0006352;transcription initiation;0.00609884916027915!GO:0006118;electron transport;0.00616345251753008!GO:0030880;RNA polymerase complex;0.00624636261556174!GO:0008092;cytoskeletal protein binding;0.00648431813836671!GO:0008139;nuclear localization sequence binding;0.00675225540476733!GO:0007040;lysosome organization and biogenesis;0.007553147586957!GO:0050662;coenzyme binding;0.00761714463280196!GO:0030145;manganese ion binding;0.00765154037652206!GO:0008094;DNA-dependent ATPase activity;0.00765728986715199!GO:0000776;kinetochore;0.00776205545652893!GO:0006740;NADPH regeneration;0.00806154727835022!GO:0006098;pentose-phosphate shunt;0.00806154727835022!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00814091628808606!GO:0051087;chaperone binding;0.00822862681646929!GO:0005581;collagen;0.00855473857862201!GO:0030521;androgen receptor signaling pathway;0.00858270685917494!GO:0005869;dynactin complex;0.00872141544389315!GO:0016251;general RNA polymerase II transcription factor activity;0.00889773314680774!GO:0051052;regulation of DNA metabolic process;0.00913505521168444!GO:0006302;double-strand break repair;0.00925297598020907!GO:0006643;membrane lipid metabolic process;0.00936071603202514!GO:0006790;sulfur metabolic process;0.00994855770345536!GO:0031124;mRNA 3'-end processing;0.010029147264201!GO:0051128;regulation of cellular component organization and biogenesis;0.0102399781674049!GO:0030041;actin filament polymerization;0.010810715731075!GO:0051540;metal cluster binding;0.0108394621564438!GO:0051536;iron-sulfur cluster binding;0.0108394621564438!GO:0016408;C-acyltransferase activity;0.0108630302095107!GO:0006892;post-Golgi vesicle-mediated transport;0.0109447795870752!GO:0005874;microtubule;0.0110260138160392!GO:0006778;porphyrin metabolic process;0.0110260138160392!GO:0033013;tetrapyrrole metabolic process;0.0110260138160392!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0110932878916598!GO:0009116;nucleoside metabolic process;0.0115436268368892!GO:0003678;DNA helicase activity;0.0116358255012839!GO:0004674;protein serine/threonine kinase activity;0.0116358255012839!GO:0003746;translation elongation factor activity;0.0118390874965598!GO:0016272;prefoldin complex;0.0124398835530426!GO:0006509;membrane protein ectodomain proteolysis;0.0125893598709247!GO:0033619;membrane protein proteolysis;0.0125893598709247!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0126310362798227!GO:0000428;DNA-directed RNA polymerase complex;0.0126310362798227!GO:0051101;regulation of DNA binding;0.012754485693442!GO:0003682;chromatin binding;0.0132630252405383!GO:0051539;4 iron, 4 sulfur cluster binding;0.0134769099411648!GO:0005862;muscle thin filament tropomyosin;0.013553190806202!GO:0005774;vacuolar membrane;0.0137197991980812!GO:0065007;biological regulation;0.0137507417422486!GO:0043022;ribosome binding;0.0138407721572807!GO:0050750;low-density lipoprotein receptor binding;0.0143841628306302!GO:0050811;GABA receptor binding;0.0144140666333866!GO:0000339;RNA cap binding;0.0144140666333866!GO:0019222;regulation of metabolic process;0.0144899274259052!GO:0040008;regulation of growth;0.0145774677116052!GO:0006720;isoprenoid metabolic process;0.0146586695411316!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0149148170723323!GO:0031625;ubiquitin protein ligase binding;0.0149201509712705!GO:0005832;chaperonin-containing T-complex;0.0149808956676908!GO:0007033;vacuole organization and biogenesis;0.0150222468829806!GO:0045792;negative regulation of cell size;0.0153496943475999!GO:0000096;sulfur amino acid metabolic process;0.0153496943475999!GO:0019798;procollagen-proline dioxygenase activity;0.0153496943475999!GO:0006401;RNA catabolic process;0.0155111233053278!GO:0031543;peptidyl-proline dioxygenase activity;0.0155240444892512!GO:0030119;AP-type membrane coat adaptor complex;0.0159160354141528!GO:0048468;cell development;0.0161770644484649!GO:0031418;L-ascorbic acid binding;0.0161797999547594!GO:0000209;protein polyubiquitination;0.016551923411494!GO:0032984;macromolecular complex disassembly;0.0170040429941834!GO:0007052;mitotic spindle organization and biogenesis;0.0170112453123567!GO:0006644;phospholipid metabolic process;0.0170370081362993!GO:0030384;phosphoinositide metabolic process;0.0173956972906858!GO:0003711;transcription elongation regulator activity;0.0174326430507191!GO:0031529;ruffle organization and biogenesis;0.0176061378452791!GO:0008033;tRNA processing;0.0176558999198507!GO:0006220;pyrimidine nucleotide metabolic process;0.0176558999198507!GO:0044452;nucleolar part;0.017686975833275!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0179020971333001!GO:0008243;plasminogen activator activity;0.0179457012711666!GO:0030308;negative regulation of cell growth;0.0180196962403963!GO:0007034;vacuolar transport;0.0180225700270147!GO:0009967;positive regulation of signal transduction;0.0180460244254822!GO:0006066;alcohol metabolic process;0.0182955390766876!GO:0006733;oxidoreduction coenzyme metabolic process;0.0182955390766876!GO:0016584;nucleosome positioning;0.0183398896942395!GO:0006611;protein export from nucleus;0.0186920926745021!GO:0031970;organelle envelope lumen;0.0191078782460524!GO:0022406;membrane docking;0.0195206357083255!GO:0048278;vesicle docking;0.0195206357083255!GO:0006769;nicotinamide metabolic process;0.0195206357083255!GO:0003756;protein disulfide isomerase activity;0.0196998336352545!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0196998336352545!GO:0006310;DNA recombination;0.0197363560058752!GO:0006497;protein amino acid lipidation;0.0203958653577321!GO:0007264;small GTPase mediated signal transduction;0.0206193737841605!GO:0008632;apoptotic program;0.0207428912609287!GO:0008203;cholesterol metabolic process;0.0209026181054137!GO:0007093;mitotic cell cycle checkpoint;0.0209832158307607!GO:0045892;negative regulation of transcription, DNA-dependent;0.0210526053218659!GO:0030032;lamellipodium biogenesis;0.0212407574536114!GO:0050681;androgen receptor binding;0.0215040048037335!GO:0042158;lipoprotein biosynthetic process;0.0215040048037335!GO:0030125;clathrin vesicle coat;0.0217557704723296!GO:0030665;clathrin coated vesicle membrane;0.0217557704723296!GO:0007021;tubulin folding;0.0225667026890213!GO:0005758;mitochondrial intermembrane space;0.0226408014180588!GO:0006807;nitrogen compound metabolic process;0.0228132887472966!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0229384783546676!GO:0015036;disulfide oxidoreductase activity;0.0229963149481692!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0231233671076529!GO:0016741;transferase activity, transferring one-carbon groups;0.023385087849887!GO:0006739;NADP metabolic process;0.023385087849887!GO:0005669;transcription factor TFIID complex;0.0241979695269498!GO:0008047;enzyme activator activity;0.0241979695269498!GO:0033559;unsaturated fatty acid metabolic process;0.0241979695269498!GO:0006636;unsaturated fatty acid biosynthetic process;0.0241979695269498!GO:0030518;steroid hormone receptor signaling pathway;0.0242132909975129!GO:0006289;nucleotide-excision repair;0.0243202590002542!GO:0006779;porphyrin biosynthetic process;0.0243202590002542!GO:0033014;tetrapyrrole biosynthetic process;0.0243202590002542!GO:0009081;branched chain family amino acid metabolic process;0.0245070107059039!GO:0006672;ceramide metabolic process;0.0245778634570038!GO:0043624;cellular protein complex disassembly;0.0246183691605424!GO:0030131;clathrin adaptor complex;0.0246183691605424!GO:0008168;methyltransferase activity;0.0246946111983504!GO:0043492;ATPase activity, coupled to movement of substances;0.0254438803911977!GO:0051098;regulation of binding;0.0254438803911977!GO:0035035;histone acetyltransferase binding;0.0256300158877758!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0256440731374479!GO:0006904;vesicle docking during exocytosis;0.0256907468578055!GO:0042168;heme metabolic process;0.0256907468578055!GO:0046519;sphingoid metabolic process;0.0261057656403392!GO:0008154;actin polymerization and/or depolymerization;0.026490916378455!GO:0031901;early endosome membrane;0.026490916378455!GO:0007030;Golgi organization and biogenesis;0.0266222189333493!GO:0005876;spindle microtubule;0.0266429767779321!GO:0006405;RNA export from nucleus;0.0267977446006522!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0271418099681642!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0271418099681642!GO:0000049;tRNA binding;0.0275813690724346!GO:0043241;protein complex disassembly;0.027601421480862!GO:0048518;positive regulation of biological process;0.0279251659691436!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0280194084548819!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0280886828920954!GO:0006607;NLS-bearing substrate import into nucleus;0.0282877219032627!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0290327130194098!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0291405415709432!GO:0009308;amine metabolic process;0.029221934271736!GO:0006519;amino acid and derivative metabolic process;0.029221934271736!GO:0008299;isoprenoid biosynthetic process;0.0292263197980226!GO:0044437;vacuolar part;0.0299956246616199!GO:0030833;regulation of actin filament polymerization;0.0303804568168099!GO:0032940;secretion by cell;0.0305905937587136!GO:0030508;thiol-disulfide exchange intermediate activity;0.0309308656500244!GO:0048037;cofactor binding;0.0309983440012598!GO:0006506;GPI anchor biosynthetic process;0.031149133816318!GO:0006144;purine base metabolic process;0.0311839531646084!GO:0006007;glucose catabolic process;0.0315409692320991!GO:0032508;DNA duplex unwinding;0.0319965785037343!GO:0032392;DNA geometric change;0.0319965785037343!GO:0009303;rRNA transcription;0.0323621544913709!GO:0006417;regulation of translation;0.0335871484352454!GO:0006984;ER-nuclear signaling pathway;0.0339395698470497!GO:0000287;magnesium ion binding;0.0350463997911136!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0352406085009294!GO:0000792;heterochromatin;0.0365849652408444!GO:0008629;induction of apoptosis by intracellular signals;0.0367546807404918!GO:0006505;GPI anchor metabolic process;0.0369979076437173!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0369979076437173!GO:0010257;NADH dehydrogenase complex assembly;0.0369979076437173!GO:0033108;mitochondrial respiratory chain complex assembly;0.0369979076437173!GO:0008320;protein transmembrane transporter activity;0.0369979076437173!GO:0005765;lysosomal membrane;0.0370395814898841!GO:0008147;structural constituent of bone;0.037046368655057!GO:0008652;amino acid biosynthetic process;0.037046368655057!GO:0006376;mRNA splice site selection;0.0381866236148961!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0381866236148961!GO:0031123;RNA 3'-end processing;0.0395115445475463!GO:0031371;ubiquitin conjugating enzyme complex;0.0395823399683852!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0395823399683852!GO:0005801;cis-Golgi network;0.0401308488117389!GO:0047485;protein N-terminus binding;0.0403101462667109!GO:0004003;ATP-dependent DNA helicase activity;0.0405694691399912!GO:0004448;isocitrate dehydrogenase activity;0.0409678150524825!GO:0006284;base-excision repair;0.0430126288686307!GO:0030911;TPR domain binding;0.0430126288686307!GO:0006629;lipid metabolic process;0.0436554701095657!GO:0051716;cellular response to stimulus;0.0436843328478584!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0439827810091271!GO:0050178;phenylpyruvate tautomerase activity;0.0446974029151243!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0447827002754538!GO:0006338;chromatin remodeling;0.0451193393864227!GO:0005784;translocon complex;0.0451193393864227!GO:0008097;5S rRNA binding;0.0453621141892!GO:0008022;protein C-terminus binding;0.0454030156593691!GO:0019362;pyridine nucleotide metabolic process;0.0459727926336609!GO:0007088;regulation of mitosis;0.0462368221839932!GO:0006275;regulation of DNA replication;0.0462368221839932!GO:0006767;water-soluble vitamin metabolic process;0.0464362719892415!GO:0022884;macromolecule transmembrane transporter activity;0.0471442503554345!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0471442503554345!GO:0006354;RNA elongation;0.0473585159550332!GO:0016301;kinase activity;0.0473793303301879!GO:0030496;midbody;0.0477045389876632!GO:0050790;regulation of catalytic activity;0.0477994654207111!GO:0006897;endocytosis;0.0478275538443214!GO:0010324;membrane invagination;0.0478275538443214!GO:0003923;GPI-anchor transamidase activity;0.0478581637420023!GO:0016255;attachment of GPI anchor to protein;0.0478581637420023!GO:0042765;GPI-anchor transamidase complex;0.0478581637420023!GO:0000910;cytokinesis;0.0480142822962324!GO:0006268;DNA unwinding during replication;0.0481063933045793!GO:0030433;ER-associated protein catabolic process;0.0487903394260555!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0487903394260555!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0497392816748458!GO:0008538;proteasome activator activity;0.0498152463697744!GO:0009119;ribonucleoside metabolic process;0.0498152463697744 | |||
|sample_id=11320 | |sample_id=11320 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=TAL1_TCF{3,4,12}:2.30481890291;NKX3-1:1.88634002332;ALX4:1.6110932107;ESR1:1.52943718555;GZF1:1.34750085267;GLI1..3:1.30951021559;NFIX:1.30127541653;UFEwm:1.26331292478;PAX1,9:1.25959496764;ATF6:1.16728603843;HOXA9_MEIS1:1.1608127303;TFAP4:1.08312767551;YY1:1.07133707435;ZNF238:1.05403815157;RXRA_VDR{dimer}:0.973748043203;KLF4:0.972815238121;CDC5L:0.966455810348;TEAD1:0.902232310339;MYBL2:0.891668564062;GFI1B:0.890869292001;EN1,2:0.881368121115;DBP:0.875960213635;HSF1,2:0.875703097236;EBF1:0.857979245126;HOX{A5,B5}:0.856768537847;GFI1:0.800082845267;ZIC1..3:0.752978193282;NKX2-2,8:0.733796329966;NR3C1:0.690837036597;IKZF1:0.687009001672;TEF:0.686918349639;TBX4,5:0.683636803987;NKX2-1,4:0.683159667746;NANOG{mouse}:0.668397887616;TOPORS:0.656531125803;XBP1:0.645128085239;SRF:0.644474992508;TLX1..3_NFIC{dimer}:0.641999454351;SOX17:0.638553704695;ZNF423:0.597898855074;PBX1:0.588576564508;MZF1:0.588150987482;TP53:0.573029122105;POU6F1:0.568103997888;PAX5:0.565557449353;EVI1:0.543298820168;HMGA1,2:0.531244773218;HAND1,2:0.515319776524;GTF2A1,2:0.511483121917;RXR{A,B,G}:0.500363226626;ARID5B:0.500130688418;HOX{A4,D4}:0.488531016507;GTF2I:0.471697027675;PATZ1:0.463643875467;NR6A1:0.462739466957;NKX6-1,2:0.454974296444;LHX3,4:0.429856119885;ESRRA:0.424013051633;AIRE:0.401063839276;ZNF384:0.365965206496;NFE2L2:0.35038339719;TFAP2{A,C}:0.34274551048;HES1:0.312557307258;TBP:0.307538805797;NFE2L1:0.294566709979;GATA4:0.260436092696;NR1H4:0.254804089898;NR5A1,2:0.242930311254;HMX1:0.231409271698;POU1F1:0.229732540657;MAZ:0.228307897248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.215141238971;E2F1..5:0.205971956266;NFATC1..3:0.203959520406;MYFfamily:0.184247392318;POU3F1..4:0.18257008942;MAFB:0.177804366191;CRX:0.173714893619;HLF:0.153739146611;FOXP1:0.149006799863;AR:0.126855969554;HNF4A_NR2F1,2:0.10993700394;ZBTB16:0.109025926389;TFCP2:0.0940739206644;TFDP1:0.0932283533028;AHR_ARNT_ARNT2:0.0826562466367;HIC1:0.0796879825726;SREBF1,2:0.0773404131809;LEF1_TCF7_TCF7L1,2:0.0564586653378;NFY{A,B,C}:0.0529554145387;ZNF143:0.0458682267023;PAX4:0.042579095822;MTE{core}:0.0299761929588;HNF1A:0.0278811945995;FOXM1:0.0258900175276;SPZ1:0.0237576790636;STAT5{A,B}:0.0231316897561;NRF1:0.00481668321835;ZBTB6:-0.0149327782652;ELK1,4_GABP{A,B1}:-0.0215169253524;PPARG:-0.0436946279263;ADNP_IRX_SIX_ZHX:-0.0450098767675;SMAD1..7,9:-0.0598293287216;CDX1,2,4:-0.0614269728736;FOXD3:-0.0619762201445;PAX8:-0.0699312750894;ONECUT1,2:-0.07081813372;PRDM1:-0.0708746294352;XCPE1{core}:-0.0720645187497;SP1:-0.085082784721;PAX6:-0.0906269064304;GCM1,2:-0.0946286033381;STAT1,3:-0.13496612093;MYB:-0.139084536864;ZNF148:-0.157080688952;REST:-0.161363687822;TLX2:-0.162304358398;bHLH_family:-0.166211954918;NHLH1,2:-0.190363462889;EGR1..3:-0.228827688205;BACH2:-0.230451161974;SOX5:-0.242126017969;RFX1:-0.249816064757;FOS_FOS{B,L1}_JUN{B,D}:-0.268735130865;NKX2-3_NKX2-5:-0.270511483103;HIF1A:-0.271027063327;RREB1:-0.290635799448;OCT4_SOX2{dimer}:-0.30848426699;CEBPA,B_DDIT3:-0.313006117003;FOXQ1:-0.316589189825;NKX3-2:-0.319220789926;TFAP2B:-0.321070801606;PITX1..3:-0.354613024293;FOSL2:-0.35728290526;RFX2..5_RFXANK_RFXAP:-0.370982887002;ALX1:-0.381007514746;PRRX1,2:-0.381451074922;FOX{F1,F2,J1}:-0.384050266075;FOX{I1,J2}:-0.384619774729;RBPJ:-0.390256872339;ATF2:-0.397248152338;DMAP1_NCOR{1,2}_SMARC:-0.399829065035;IRF1,2:-0.404580424115;MED-1{core}:-0.404674529502;IRF7:-0.412089595854;NANOG:-0.417851833209;CREB1:-0.43561593023;NFE2:-0.442391978377;ELF1,2,4:-0.452141206149;PAX2:-0.452283694231;ZFP161:-0.452377099242;JUN:-0.456799671756;SOX2:-0.460251543074;NFKB1_REL_RELA:-0.475507537734;FOXN1:-0.482277205655;PAX3,7:-0.489190868992;RUNX1..3:-0.491067072389;BPTF:-0.496139467346;STAT2,4,6:-0.500836649905;FOXP3:-0.506444267724;TGIF1:-0.509275125894;MTF1:-0.511669356968;HOX{A6,A7,B6,B7}:-0.512084216904;LMO2:-0.517678261008;ATF4:-0.517692174489;MEF2{A,B,C,D}:-0.528788477063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.534489760235;FOXL1:-0.547298897368;T:-0.547799957989;GATA6:-0.558182916012;ATF5_CREB3:-0.578592093969;POU5F1:-0.580850337224;FOXA2:-0.600461111394;SOX{8,9,10}:-0.604741137838;ETS1,2:-0.610654385486;SPIB:-0.627774117778;FOXO1,3,4:-0.630233769909;FOX{D1,D2}:-0.646040997641;SPI1:-0.700276547016;VSX1,2:-0.709539652953;POU2F1..3:-0.713629746132;SNAI1..3:-0.736705727423;BREu{core}:-0.750536481317;PDX1:-0.786319484914;EP300:-0.788914514996;CUX2:-0.891027008582;IKZF2:-0.895410288691;ZEB1:-0.909008698545;RORA:-0.95156717624;NFIL3:-1.05216474992;HBP1_HMGB_SSRP1_UBTF:-1.18435961344;MYOD1:-1.28723210873 | |top_motifs=TAL1_TCF{3,4,12}:2.30481890291;NKX3-1:1.88634002332;ALX4:1.6110932107;ESR1:1.52943718555;GZF1:1.34750085267;GLI1..3:1.30951021559;NFIX:1.30127541653;UFEwm:1.26331292478;PAX1,9:1.25959496764;ATF6:1.16728603843;HOXA9_MEIS1:1.1608127303;TFAP4:1.08312767551;YY1:1.07133707435;ZNF238:1.05403815157;RXRA_VDR{dimer}:0.973748043203;KLF4:0.972815238121;CDC5L:0.966455810348;TEAD1:0.902232310339;MYBL2:0.891668564062;GFI1B:0.890869292001;EN1,2:0.881368121115;DBP:0.875960213635;HSF1,2:0.875703097236;EBF1:0.857979245126;HOX{A5,B5}:0.856768537847;GFI1:0.800082845267;ZIC1..3:0.752978193282;NKX2-2,8:0.733796329966;NR3C1:0.690837036597;IKZF1:0.687009001672;TEF:0.686918349639;TBX4,5:0.683636803987;NKX2-1,4:0.683159667746;NANOG{mouse}:0.668397887616;TOPORS:0.656531125803;XBP1:0.645128085239;SRF:0.644474992508;TLX1..3_NFIC{dimer}:0.641999454351;SOX17:0.638553704695;ZNF423:0.597898855074;PBX1:0.588576564508;MZF1:0.588150987482;TP53:0.573029122105;POU6F1:0.568103997888;PAX5:0.565557449353;EVI1:0.543298820168;HMGA1,2:0.531244773218;HAND1,2:0.515319776524;GTF2A1,2:0.511483121917;RXR{A,B,G}:0.500363226626;ARID5B:0.500130688418;HOX{A4,D4}:0.488531016507;GTF2I:0.471697027675;PATZ1:0.463643875467;NR6A1:0.462739466957;NKX6-1,2:0.454974296444;LHX3,4:0.429856119885;ESRRA:0.424013051633;AIRE:0.401063839276;ZNF384:0.365965206496;NFE2L2:0.35038339719;TFAP2{A,C}:0.34274551048;HES1:0.312557307258;TBP:0.307538805797;NFE2L1:0.294566709979;GATA4:0.260436092696;NR1H4:0.254804089898;NR5A1,2:0.242930311254;HMX1:0.231409271698;POU1F1:0.229732540657;MAZ:0.228307897248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.215141238971;E2F1..5:0.205971956266;NFATC1..3:0.203959520406;MYFfamily:0.184247392318;POU3F1..4:0.18257008942;MAFB:0.177804366191;CRX:0.173714893619;HLF:0.153739146611;FOXP1:0.149006799863;AR:0.126855969554;HNF4A_NR2F1,2:0.10993700394;ZBTB16:0.109025926389;TFCP2:0.0940739206644;TFDP1:0.0932283533028;AHR_ARNT_ARNT2:0.0826562466367;HIC1:0.0796879825726;SREBF1,2:0.0773404131809;LEF1_TCF7_TCF7L1,2:0.0564586653378;NFY{A,B,C}:0.0529554145387;ZNF143:0.0458682267023;PAX4:0.042579095822;MTE{core}:0.0299761929588;HNF1A:0.0278811945995;FOXM1:0.0258900175276;SPZ1:0.0237576790636;STAT5{A,B}:0.0231316897561;NRF1:0.00481668321835;ZBTB6:-0.0149327782652;ELK1,4_GABP{A,B1}:-0.0215169253524;PPARG:-0.0436946279263;ADNP_IRX_SIX_ZHX:-0.0450098767675;SMAD1..7,9:-0.0598293287216;CDX1,2,4:-0.0614269728736;FOXD3:-0.0619762201445;PAX8:-0.0699312750894;ONECUT1,2:-0.07081813372;PRDM1:-0.0708746294352;XCPE1{core}:-0.0720645187497;SP1:-0.085082784721;PAX6:-0.0906269064304;GCM1,2:-0.0946286033381;STAT1,3:-0.13496612093;MYB:-0.139084536864;ZNF148:-0.157080688952;REST:-0.161363687822;TLX2:-0.162304358398;bHLH_family:-0.166211954918;NHLH1,2:-0.190363462889;EGR1..3:-0.228827688205;BACH2:-0.230451161974;SOX5:-0.242126017969;RFX1:-0.249816064757;FOS_FOS{B,L1}_JUN{B,D}:-0.268735130865;NKX2-3_NKX2-5:-0.270511483103;HIF1A:-0.271027063327;RREB1:-0.290635799448;OCT4_SOX2{dimer}:-0.30848426699;CEBPA,B_DDIT3:-0.313006117003;FOXQ1:-0.316589189825;NKX3-2:-0.319220789926;TFAP2B:-0.321070801606;PITX1..3:-0.354613024293;FOSL2:-0.35728290526;RFX2..5_RFXANK_RFXAP:-0.370982887002;ALX1:-0.381007514746;PRRX1,2:-0.381451074922;FOX{F1,F2,J1}:-0.384050266075;FOX{I1,J2}:-0.384619774729;RBPJ:-0.390256872339;ATF2:-0.397248152338;DMAP1_NCOR{1,2}_SMARC:-0.399829065035;IRF1,2:-0.404580424115;MED-1{core}:-0.404674529502;IRF7:-0.412089595854;NANOG:-0.417851833209;CREB1:-0.43561593023;NFE2:-0.442391978377;ELF1,2,4:-0.452141206149;PAX2:-0.452283694231;ZFP161:-0.452377099242;JUN:-0.456799671756;SOX2:-0.460251543074;NFKB1_REL_RELA:-0.475507537734;FOXN1:-0.482277205655;PAX3,7:-0.489190868992;RUNX1..3:-0.491067072389;BPTF:-0.496139467346;STAT2,4,6:-0.500836649905;FOXP3:-0.506444267724;TGIF1:-0.509275125894;MTF1:-0.511669356968;HOX{A6,A7,B6,B7}:-0.512084216904;LMO2:-0.517678261008;ATF4:-0.517692174489;MEF2{A,B,C,D}:-0.528788477063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.534489760235;FOXL1:-0.547298897368;T:-0.547799957989;GATA6:-0.558182916012;ATF5_CREB3:-0.578592093969;POU5F1:-0.580850337224;FOXA2:-0.600461111394;SOX{8,9,10}:-0.604741137838;ETS1,2:-0.610654385486;SPIB:-0.627774117778;FOXO1,3,4:-0.630233769909;FOX{D1,D2}:-0.646040997641;SPI1:-0.700276547016;VSX1,2:-0.709539652953;POU2F1..3:-0.713629746132;SNAI1..3:-0.736705727423;BREu{core}:-0.750536481317;PDX1:-0.786319484914;EP300:-0.788914514996;CUX2:-0.891027008582;IKZF2:-0.895410288691;ZEB1:-0.909008698545;RORA:-0.95156717624;NFIL3:-1.05216474992;HBP1_HMGB_SSRP1_UBTF:-1.18435961344;MYOD1:-1.28723210873 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11320-117D6;search_select_hide=table117:FF:11320-117D6 | |||
}} | }} | ||
Latest revision as of 17:51, 4 June 2020
| Name: | Smooth Muscle Cells - Colonic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11963 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11963
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11963
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.961 |
| 10 | 10 | 0.587 |
| 100 | 100 | 0.164 |
| 101 | 101 | 0.418 |
| 102 | 102 | 0.0575 |
| 103 | 103 | 0.943 |
| 104 | 104 | 0.917 |
| 105 | 105 | 0.0502 |
| 106 | 106 | 0.685 |
| 107 | 107 | 0.506 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.375 |
| 11 | 11 | 0.669 |
| 110 | 110 | 0.0767 |
| 111 | 111 | 0.524 |
| 112 | 112 | 0.943 |
| 113 | 113 | 0.0881 |
| 114 | 114 | 0.938 |
| 115 | 115 | 0.00354 |
| 116 | 116 | 0.0155 |
| 117 | 117 | 0.968 |
| 118 | 118 | 0.987 |
| 119 | 119 | 0.402 |
| 12 | 12 | 0.279 |
| 120 | 120 | 0.158 |
| 121 | 121 | 0.0818 |
| 122 | 122 | 0.00824 |
| 123 | 123 | 0.22 |
| 124 | 124 | 0.291 |
| 125 | 125 | 0.284 |
| 126 | 126 | 0.801 |
| 127 | 127 | 0.138 |
| 128 | 128 | 0.371 |
| 129 | 129 | 0.1 |
| 13 | 13 | 0.629 |
| 130 | 130 | 0.108 |
| 131 | 131 | 0.928 |
| 132 | 132 | 0.692 |
| 133 | 133 | 0.275 |
| 134 | 134 | 0.42 |
| 135 | 135 | 0.558 |
| 136 | 136 | 0.203 |
| 137 | 137 | 0.0271 |
| 138 | 138 | 0.523 |
| 139 | 139 | 0.356 |
| 14 | 14 | 0.151 |
| 140 | 140 | 0.924 |
| 141 | 141 | 0.968 |
| 142 | 142 | 0.694 |
| 143 | 143 | 0.376 |
| 144 | 144 | 0.528 |
| 145 | 145 | 0.658 |
| 146 | 146 | 0.821 |
| 147 | 147 | 0.207 |
| 148 | 148 | 0.813 |
| 149 | 149 | 0.133 |
| 15 | 15 | 0.183 |
| 150 | 150 | 0.504 |
| 151 | 151 | 0.573 |
| 152 | 152 | 0.276 |
| 153 | 153 | 0.826 |
| 154 | 154 | 0.937 |
| 155 | 155 | 3.50299e-4 |
| 156 | 156 | 0.265 |
| 157 | 157 | 0.921 |
| 158 | 158 | 0.0057 |
| 159 | 159 | 0.214 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.46 |
| 161 | 161 | 0.523 |
| 162 | 162 | 0.106 |
| 163 | 163 | 0.556 |
| 164 | 164 | 0.119 |
| 165 | 165 | 0.955 |
| 166 | 166 | 0.0239 |
| 167 | 167 | 0.495 |
| 168 | 168 | 0.0454 |
| 169 | 169 | 0.18 |
| 17 | 17 | 0.89 |
| 18 | 18 | 0.884 |
| 19 | 19 | 0.0197 |
| 2 | 2 | 0.27 |
| 20 | 20 | 0.374 |
| 21 | 21 | 0.207 |
| 22 | 22 | 0.542 |
| 23 | 23 | 0.862 |
| 24 | 24 | 0.925 |
| 25 | 25 | 0.19 |
| 26 | 26 | 0.399 |
| 27 | 27 | 0.947 |
| 28 | 28 | 0.174 |
| 29 | 29 | 0.401 |
| 3 | 3 | 0.655 |
| 30 | 30 | 0.591 |
| 31 | 31 | 0.537 |
| 32 | 32 | 6.10396e-20 |
| 33 | 33 | 0.916 |
| 34 | 34 | 0.714 |
| 35 | 35 | 0.524 |
| 36 | 36 | 0.0485 |
| 37 | 37 | 0.649 |
| 38 | 38 | 0.248 |
| 39 | 39 | 0.486 |
| 4 | 4 | 0.198 |
| 40 | 40 | 0.538 |
| 41 | 41 | 0.0271 |
| 42 | 42 | 0.465 |
| 43 | 43 | 0.894 |
| 44 | 44 | 0.236 |
| 45 | 45 | 0.254 |
| 46 | 46 | 0.751 |
| 47 | 47 | 0.989 |
| 48 | 48 | 0.999 |
| 49 | 49 | 0.214 |
| 5 | 5 | 0.75 |
| 50 | 50 | 0.696 |
| 51 | 51 | 0.761 |
| 52 | 52 | 0.72 |
| 53 | 53 | 0.162 |
| 54 | 54 | 0.936 |
| 55 | 55 | 0.968 |
| 56 | 56 | 0.981 |
| 57 | 57 | 0.687 |
| 58 | 58 | 0.205 |
| 59 | 59 | 0.308 |
| 6 | 6 | 0.619 |
| 60 | 60 | 0.358 |
| 61 | 61 | 0.615 |
| 62 | 62 | 0.347 |
| 63 | 63 | 0.902 |
| 64 | 64 | 0.806 |
| 65 | 65 | 0.912 |
| 66 | 66 | 0.755 |
| 67 | 67 | 0.906 |
| 68 | 68 | 0.826 |
| 69 | 69 | 0.509 |
| 7 | 7 | 0.615 |
| 70 | 70 | 0.0192 |
| 71 | 71 | 0.0548 |
| 72 | 72 | 0.28 |
| 73 | 73 | 0.138 |
| 74 | 74 | 0.042 |
| 75 | 75 | 0.78 |
| 76 | 76 | 0.89 |
| 77 | 77 | 0.461 |
| 78 | 78 | 0.223 |
| 79 | 79 | 0.00179 |
| 8 | 8 | 0.245 |
| 80 | 80 | 0.0456 |
| 81 | 81 | 0.95 |
| 82 | 82 | 0.877 |
| 83 | 83 | 0.505 |
| 84 | 84 | 0.683 |
| 85 | 85 | 0.845 |
| 86 | 86 | 0.254 |
| 87 | 87 | 0.128 |
| 88 | 88 | 0.526 |
| 89 | 89 | 0.628 |
| 9 | 9 | 0.922 |
| 90 | 90 | 0.733 |
| 91 | 91 | 0.941 |
| 92 | 92 | 0.848 |
| 93 | 93 | 0.0311 |
| 94 | 94 | 0.748 |
| 95 | 95 | 0.351 |
| 96 | 96 | 0.135 |
| 97 | 97 | 0.868 |
| 98 | 98 | 0.116 |
| 99 | 99 | 5.46138e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11963
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
