FF:11321-117D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005751 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005751 | ||
|accession_numbers=CAGE;DRX008459;DRR009331;DRZ000756;DRZ002141;DRZ012106;DRZ013491 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037068;DRR041434;DRZ007076 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000165 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11321-117D7 | |id=FF:11321-117D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000165 | ||
|is_obsolete= | |||
|library_id=CNhs11964 | |||
|library_id_phase_based=2:CNhs11964 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11321 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GAGTGG.11321 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11321 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GAGTGG.11321 | |||
|name=Skeletal Muscle Satellite Cells, donor2 | |name=Skeletal Muscle Satellite Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11964,LSID836,release011,COMPLETED | |profile_hcage=CNhs11964,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0294059092864159,0.0335479717209454,0,0.271864868185703,0,-0.00345097232999297,0,0.0294669379049168,0.0726607746835196,0,0,0,0,0,0,0,0,0,0,0,0.0588118185728318,0,0.437778774957609,0,0.0294059092864159,0,0,0,0.173906971917645,0,0,0.0657188514075348,0,0,0,0,0,0,0,0,0,0,0,0,0.114284547994202,0.0182542598971978,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.437782313812256,0,0.0451353881759607,0.156867057756393,0.317175732349008,0,0,0.1013318139733,0,0,0,0,0,0,0,0,0.110600950579883,0,0,0,0,0,0,0,0,0,0.0588118185728318,0,0,0,0,0.00923633604724448,0.0518535300719536,0.152150118055503,0,0.00108136151916776,-0.0584468268118252,-0.00411335590006212,0,0.156867057756393,0,0.110600950579883,0.0125655993421768,0.0855265462348029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0220314628828053,0.0588118185728318,0,0,0.0588118185728318,0.0963396178491952,0,0,0.0588118185728318,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0125655993421768,0,0.110600950579883,0.0588118185728318,0,0.0588118185728318,0.304300236111007,0,0,0.156867057756393,0,0,0.166989218306049,0,0.100560405838296,-0.0329141919435887,0.0294059092864159,0,-0.00306388412479945,0,0.414168093591613,0,0.0294059092864159,0,0,0,0,0,-0.0175189163726815,0,0.284068050860529,0.0294059092864159,0,0.0588118185728318,0,0.036675194206091,0.0837234446001574,0.0588118185728318,0.00709155741114935,0.088522796679025,0,0,0,0,-0.0476998928194605,0,0.0777959573926564,0.154089945287115,0.293068870956893,0.159978429511288,-0.04680465889238,0,0,0,0.186629114651228,0.0174963059044702,0,0,-0.0139404135872615,0.0553004752899415,0,0,0.608565899803022,0,-0.0165332403013201,0.296678785550263,0,0.0834178726352817,0,0,0,0,0,0,0,0,0,0,0,0.54744181350343,0.264113188627067,0,0.0588118185728318,0.0588118185728318,0.0410850587267531,-0.256896664439971,0,0.0467737534975744,0.78767888972251,0.168150337327395,0.0508481444274328,-0.0232383960653059,0.00164555355167261,0.255153623348902,0.00864172993779465,-0.17608806418073,0.00676553457970686,0.124463018814564,0.384664905040457,0.0588118185728318,0.0518535300719536,0.173766724936215,0.0315178919579647,0.0048440580157314,-0.00257850043124262,0.47765592928928,-0.141180283731806,0,0,0.0588118185728318,-0.0609531532594013,0,-0.0494802456860182,0.188443180993076,0.029883937267282,-0.161926803677274,0.114180510230928,0.0633801580046295,-0.0237468401489451,0.769199400229313,0.0637365695216723,0.0292361368726391,0.517285463387977,0.0365798425957353,0,-0.0139161079851753,-0.0869790333055351,-0.264739084689055,-0.134350047272657,0,0.0735658885478341,-0.0683442610773682,0.0273300716777042,0.125462230104097,-0.00364748941746784,0,0.080565583824681,0.0281789328949648,0,0,0.0683944402276768,0.00519088817358155,0.236810113610532,0.0881117501003141,-0.302682029419634,0.181312532036068,0,0.0264089029505534,-0.000948516485688665,-0.0783949234464585,0,-0.139754039420098,0.0588118185728318,0.0364064500885519,-0.0196979921511322,0,0.0808819511520562,0.162819753964174,0.186061815706068,-0.00822671180012424,-0.0584468268118252,-0.190733125931794,0.151100971161962,0.100341429409203,0.384875605116262,0.0743677445929836,0.433046189942979,0.0132080970507994,0.140575504528053,-0.10485150703122,0,0.0709018895556882,0.0588118185728318,0.0576354233890561,0,-0.154939583175478,0.0588118185728318,-0.0663428242152353,0.253398593038413,-0.0500936990821215,-0.11421912821255,0.0238876459969524,0.0869123360081248,0.0535841112084346,0.0588118185728318,0,0.00852980854825684,0,0.184113519115205,0.115927339939053,-0.126944043288232,0.194510279936968,0,0.141421855710524,0,0,0.0207329223229645,0.285696984653878,0,-0.1014776270719,-0.0181011289073599,-0.0830430187770276,0.120839040175598,0.0588118185728318,0,-0.038744174226348,0,0.271864868185703,-0.124451937912008,0.156867057756393,-0.138307198052611,0.475068093256957,0.0222280456210155,0.412005756841329,0,0,-0.0669268153852924,0,0.293895074071362,0,0,-0.0146111419127737,0.0402389447662603,0,0,0.110600950579883,0,0.0255285951094012,0,0,0,0,0,0.0356937926366358,-0.116408770375781,0.0593347633751652,0,-0.0395876500613432,0,0.156867057756393,0,0,0,0,0.0528202470941993,0.0588118185728318,0.11178284999173,0.0700671871986311,0.0338496420799728,0,0,0,0,0.222058911258781,0.0686283060909791,0.0588118185728318,0.0250043512587614,0,0,0.0588118185728318,0,0.0244599607906719,0,0,0,0.107839438164612,0.00108136151916776,0.00404750001028345,0,0,0,0.112241273896774,0,0,0,0.0757159892367752,-0.00466186706670713,0,0,0.113046040232103,0,0.0242178777031037,0.0290190710330418,0,0.207355267431934,0.380862777739302,-0.450138717736174,0,0,-0.0626716906034905,0,0,0.0387350841961875,0,0.0588118185728318,0.0343756993438247,0,0,0,0,0,0,-0.0574474546433625,0.0847063845763574,0,0.0326478805794072,0,0,0.0588118185728318,0,0.0588118185728318,0,0,0,-0.0764446283223306,0.144586056952022,0.271864868185703,0,0,0,0,0,0,0.00529988620751275,-0.0548119661253854,0.0294059092864159,0,0.0761764642254077,0,0,0.110600950579883,0,0,0.0303520409361377,0,0,0,0.0145039696955353,0,0.317175732349008,0,0.0588118185728318,0,0.0588118185728318,0.0865097307942075,0,0,-0.166761181613631,0,0,0,0,0,0,0.0588118185728318,0.0294059092864159,0,0,0,0,0,0.0335479717209454,0.0798620586809724,0,0,0,0,0,0,0,0.0294669379049168,0,0.0588118185728318,0,0,0.0429826840474159,0,0,0,0.396981595810223,0,-0.00345097232999297,0.271864868185703,0,0,0,0,0.0588118185728318,0,0,0,0,0,0,0,0,0,0,0,0.0784335288781965,0.0553004752899415,0,0.00193380152460465,0.415412623956047,0,0.491152325549262,0.0159197595332656,0,0,0.209791069025162,0,0,0,0,0,0,0.0470931048496695,0.0387594552234616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0588118185728318,0,0,0,0,0,0,0.0204424314848532,0,0,0,0,0,0,0,0.173906971917645,0,0,-0.0626269005141103,0,0,0,0,0.0589737844768143,0,0.125979108801575,0.288492155644347,-0.0396297675833192,0,0,0.334480602449844,0.110952770896812,0.437782313812256,0,0.0456676585199791,0.156867057756393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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC3515 | |rna_catalog_number=SC3515 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D7 | |rna_tube_id=117D7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GAGTGG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.41435578935862e-267!GO:0005737;cytoplasm;4.82163562446876e-213!GO:0043226;organelle;1.4174472911305e-210!GO:0043229;intracellular organelle;4.40359968944517e-210!GO:0043231;intracellular membrane-bound organelle;2.53798739899499e-199!GO:0043227;membrane-bound organelle;3.4485908141209e-199!GO:0044422;organelle part;5.24141614835883e-157!GO:0044446;intracellular organelle part;2.63286943866879e-155!GO:0044444;cytoplasmic part;6.92844776981353e-151!GO:0032991;macromolecular complex;1.21449937321692e-106!GO:0044237;cellular metabolic process;4.25146019735042e-90!GO:0044238;primary metabolic process;1.20756171921459e-89!GO:0030529;ribonucleoprotein complex;2.18635292052521e-88!GO:0043170;macromolecule metabolic process;1.64488459479434e-79!GO:0005515;protein binding;2.94217990885841e-78!GO:0005634;nucleus;2.08928988355692e-77!GO:0043233;organelle lumen;2.36511553183388e-77!GO:0031974;membrane-enclosed lumen;2.36511553183388e-77!GO:0005739;mitochondrion;1.09582437969378e-76!GO:0044428;nuclear part;8.03084672204471e-74!GO:0003723;RNA binding;4.87962308090143e-67!GO:0005840;ribosome;4.69212296154458e-55!GO:0043234;protein complex;8.58464934888078e-55!GO:0016043;cellular component organization and biogenesis;3.61822807586537e-54!GO:0044429;mitochondrial part;1.3080538308216e-50!GO:0031090;organelle membrane;1.56330035397523e-50!GO:0006412;translation;1.74582597688853e-48!GO:0003735;structural constituent of ribosome;4.78670898598478e-48!GO:0019538;protein metabolic process;5.23433503316634e-47!GO:0006396;RNA processing;2.42142420043034e-45!GO:0031967;organelle envelope;4.11464280625926e-44!GO:0031975;envelope;8.23276194388762e-44!GO:0031981;nuclear lumen;9.98815906458812e-43!GO:0009058;biosynthetic process;1.49548164566048e-42!GO:0043283;biopolymer metabolic process;3.4560795114196e-42!GO:0033036;macromolecule localization;3.582256096813e-42!GO:0044260;cellular macromolecule metabolic process;9.39234635957818e-42!GO:0033279;ribosomal subunit;1.55425702255611e-41!GO:0015031;protein transport;2.32901806879296e-41!GO:0043228;non-membrane-bound organelle;3.17840112471125e-41!GO:0043232;intracellular non-membrane-bound organelle;3.17840112471125e-41!GO:0010467;gene expression;9.42815424177695e-41!GO:0044267;cellular protein metabolic process;1.35832072406825e-40!GO:0005829;cytosol;1.04833821292741e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.57604879037516e-39!GO:0044249;cellular biosynthetic process;2.01021546358134e-39!GO:0008104;protein localization;9.04822377412021e-39!GO:0045184;establishment of protein localization;1.89946002994834e-38!GO:0006996;organelle organization and biogenesis;8.4894566417964e-38!GO:0016071;mRNA metabolic process;9.04588004791102e-38!GO:0009059;macromolecule biosynthetic process;5.73239533124715e-37!GO:0046907;intracellular transport;9.74461950028403e-36!GO:0008380;RNA splicing;3.21870349348712e-35!GO:0065003;macromolecular complex assembly;4.4615811460261e-34!GO:0022607;cellular component assembly;1.38792425008131e-32!GO:0005740;mitochondrial envelope;5.57392900702354e-32!GO:0006397;mRNA processing;7.6164289310958e-32!GO:0019866;organelle inner membrane;2.13128218395868e-30!GO:0031966;mitochondrial membrane;2.95940448244439e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.87648468735213e-30!GO:0006886;intracellular protein transport;1.54453721439822e-28!GO:0005743;mitochondrial inner membrane;2.73474133061979e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.2538640106603e-28!GO:0006259;DNA metabolic process;7.99247549389628e-28!GO:0005654;nucleoplasm;4.63036279236879e-27!GO:0005681;spliceosome;1.06068860067172e-24!GO:0031980;mitochondrial lumen;3.40648046162963e-23!GO:0005759;mitochondrial matrix;3.40648046162963e-23!GO:0044445;cytosolic part;3.40648046162963e-23!GO:0051641;cellular localization;5.72144135640163e-23!GO:0003676;nucleic acid binding;7.19247224081969e-23!GO:0051649;establishment of cellular localization;8.60315015521987e-23!GO:0006119;oxidative phosphorylation;1.3633477979894e-22!GO:0015934;large ribosomal subunit;6.24428900413693e-22!GO:0044451;nucleoplasm part;7.37989817337685e-22!GO:0000166;nucleotide binding;8.9547029453233e-22!GO:0007049;cell cycle;9.07466775506248e-22!GO:0044455;mitochondrial membrane part;1.95419813959212e-21!GO:0015935;small ribosomal subunit;1.0184345716055e-20!GO:0006457;protein folding;3.65048332249655e-20!GO:0012505;endomembrane system;3.94411740192315e-20!GO:0005783;endoplasmic reticulum;8.38219220138206e-20!GO:0005746;mitochondrial respiratory chain;1.93860532455228e-18!GO:0048770;pigment granule;2.85710176130264e-18!GO:0042470;melanosome;2.85710176130264e-18!GO:0051186;cofactor metabolic process;4.81732920489356e-18!GO:0016070;RNA metabolic process;2.3758143342722e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.27116795971875e-17!GO:0022618;protein-RNA complex assembly;4.00957573073436e-17!GO:0022402;cell cycle process;4.92624570480425e-17!GO:0000278;mitotic cell cycle;5.25447006812729e-17!GO:0016462;pyrophosphatase activity;8.9708675229711e-17!GO:0016874;ligase activity;1.08757106538579e-16!GO:0008134;transcription factor binding;1.12447038098058e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.29691662444747e-16!GO:0044432;endoplasmic reticulum part;1.95524568088109e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.9813339805426e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.81333197361681e-16!GO:0003954;NADH dehydrogenase activity;3.81333197361681e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.81333197361681e-16!GO:0005730;nucleolus;4.03753315126058e-16!GO:0017111;nucleoside-triphosphatase activity;5.26527082722875e-16!GO:0005761;mitochondrial ribosome;7.45479733381082e-16!GO:0000313;organellar ribosome;7.45479733381082e-16!GO:0006605;protein targeting;2.10065204604817e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.1966794109576e-15!GO:0044265;cellular macromolecule catabolic process;2.50789359700513e-15!GO:0006974;response to DNA damage stimulus;2.7801465409572e-15!GO:0005794;Golgi apparatus;2.99573292077828e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08959881930155e-15!GO:0043285;biopolymer catabolic process;3.82987006632984e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.95536377988173e-15!GO:0006512;ubiquitin cycle;5.55100261147921e-15!GO:0017076;purine nucleotide binding;1.24891307822556e-14!GO:0005694;chromosome;1.25983484978283e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36602820729972e-14!GO:0008135;translation factor activity, nucleic acid binding;1.61096519137448e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.69325986787061e-14!GO:0042773;ATP synthesis coupled electron transport;1.69325986787061e-14!GO:0048193;Golgi vesicle transport;2.57102745942556e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.59869505169065e-14!GO:0045271;respiratory chain complex I;2.59869505169065e-14!GO:0005747;mitochondrial respiratory chain complex I;2.59869505169065e-14!GO:0019941;modification-dependent protein catabolic process;2.59869505169065e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.59869505169065e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.37160827273436e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.59558941866455e-14!GO:0032553;ribonucleotide binding;3.89999393105871e-14!GO:0032555;purine ribonucleotide binding;3.89999393105871e-14!GO:0044257;cellular protein catabolic process;4.0394991883828e-14!GO:0006732;coenzyme metabolic process;4.55963610052286e-14!GO:0044248;cellular catabolic process;4.55963610052286e-14!GO:0009057;macromolecule catabolic process;5.95152842069747e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.27368343621515e-14!GO:0051276;chromosome organization and biogenesis;1.72904378406249e-13!GO:0044427;chromosomal part;2.90313313924225e-13!GO:0030163;protein catabolic process;2.96827552550727e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.22672111072302e-13!GO:0000375;RNA splicing, via transesterification reactions;4.22672111072302e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.22672111072302e-13!GO:0005635;nuclear envelope;4.73654791247428e-13!GO:0051082;unfolded protein binding;5.79352526338523e-13!GO:0022403;cell cycle phase;7.94936794448186e-13!GO:0000087;M phase of mitotic cell cycle;1.18729044509302e-12!GO:0007067;mitosis;1.80853533478955e-12!GO:0016192;vesicle-mediated transport;2.50561733939222e-12!GO:0030554;adenyl nucleotide binding;3.16947373461347e-12!GO:0005524;ATP binding;3.8983066503786e-12!GO:0006281;DNA repair;5.06633156240491e-12!GO:0009055;electron carrier activity;5.29456519718612e-12!GO:0032559;adenyl ribonucleotide binding;7.7126143812252e-12!GO:0031965;nuclear membrane;8.44775360748666e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15936934663512e-11!GO:0005793;ER-Golgi intermediate compartment;1.23916048859159e-11!GO:0006913;nucleocytoplasmic transport;1.46399608956284e-11!GO:0042254;ribosome biogenesis and assembly;1.55711691205328e-11!GO:0003743;translation initiation factor activity;2.05504722358291e-11!GO:0051301;cell division;2.40893788021978e-11!GO:0009719;response to endogenous stimulus;3.31440267366802e-11!GO:0016604;nuclear body;3.37639474283689e-11!GO:0051169;nuclear transport;3.98570154529009e-11!GO:0006323;DNA packaging;4.94042137954859e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4393326919229e-11!GO:0006413;translational initiation;7.54142223489041e-11!GO:0006446;regulation of translational initiation;9.15868414360711e-11!GO:0043412;biopolymer modification;1.33687956769678e-10!GO:0005789;endoplasmic reticulum membrane;1.37447804849989e-10!GO:0003712;transcription cofactor activity;1.58112080718047e-10!GO:0009259;ribonucleotide metabolic process;1.62745943002342e-10!GO:0006163;purine nucleotide metabolic process;1.88963111840963e-10!GO:0044453;nuclear membrane part;1.97618464027432e-10!GO:0006260;DNA replication;2.52748541670869e-10!GO:0006461;protein complex assembly;2.71824723009507e-10!GO:0000279;M phase;4.13969233722026e-10!GO:0009150;purine ribonucleotide metabolic process;5.19784010510902e-10!GO:0016491;oxidoreductase activity;5.71406543928537e-10!GO:0017038;protein import;1.06626937194757e-09!GO:0065004;protein-DNA complex assembly;1.17454743716918e-09!GO:0008565;protein transporter activity;1.27916886669735e-09!GO:0006164;purine nucleotide biosynthetic process;1.33802282597949e-09!GO:0000074;regulation of progression through cell cycle;2.25662863591479e-09!GO:0009060;aerobic respiration;2.5143220353365e-09!GO:0006464;protein modification process;2.5931533979475e-09!GO:0016607;nuclear speck;2.61556532644487e-09!GO:0009260;ribonucleotide biosynthetic process;2.92003540219695e-09!GO:0051726;regulation of cell cycle;2.92003540219695e-09!GO:0006399;tRNA metabolic process;3.12318011509886e-09!GO:0045333;cellular respiration;3.19955548812156e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.61908902050204e-09!GO:0005788;endoplasmic reticulum lumen;4.47576105238087e-09!GO:0006333;chromatin assembly or disassembly;4.54658879367571e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.34223102933319e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.34223102933319e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.34223102933319e-09!GO:0012501;programmed cell death;7.02629394045856e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.62630187624159e-09!GO:0006366;transcription from RNA polymerase II promoter;8.45739688074409e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.75706912704845e-09!GO:0043038;amino acid activation;1.22244024108151e-08!GO:0006418;tRNA aminoacylation for protein translation;1.22244024108151e-08!GO:0043039;tRNA aminoacylation;1.22244024108151e-08!GO:0042623;ATPase activity, coupled;1.26280491023982e-08!GO:0006915;apoptosis;1.32315044427659e-08!GO:0009056;catabolic process;1.59488143626113e-08!GO:0000785;chromatin;1.74093592786344e-08!GO:0051188;cofactor biosynthetic process;1.76464969136406e-08!GO:0008639;small protein conjugating enzyme activity;1.8069445824257e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.00192352202811e-08!GO:0016887;ATPase activity;2.07082021463982e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.08263142945843e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.13634049018236e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.64203664907658e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.64203664907658e-08!GO:0009141;nucleoside triphosphate metabolic process;2.73397412307624e-08!GO:0015630;microtubule cytoskeleton;2.89123453337992e-08!GO:0004842;ubiquitin-protein ligase activity;3.12483987435713e-08!GO:0008219;cell death;3.4424493817658e-08!GO:0016265;death;3.4424493817658e-08!GO:0004386;helicase activity;4.09077283184045e-08!GO:0005643;nuclear pore;4.38072549810517e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.40354842167024e-08!GO:0030120;vesicle coat;4.60344499130214e-08!GO:0030662;coated vesicle membrane;4.60344499130214e-08!GO:0043687;post-translational protein modification;4.75073485399265e-08!GO:0003697;single-stranded DNA binding;6.67994933210149e-08!GO:0065002;intracellular protein transport across a membrane;7.48078847711915e-08!GO:0050794;regulation of cellular process;7.77175576846556e-08!GO:0006099;tricarboxylic acid cycle;8.48283042912541e-08!GO:0046356;acetyl-CoA catabolic process;8.48283042912541e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.71350344758718e-08!GO:0019787;small conjugating protein ligase activity;8.97054080373424e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.00679049937932e-07!GO:0006364;rRNA processing;1.35667111835985e-07!GO:0048523;negative regulation of cellular process;1.37859384389608e-07!GO:0015986;ATP synthesis coupled proton transport;1.47013291790855e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.47013291790855e-07!GO:0051187;cofactor catabolic process;1.49995512914377e-07!GO:0006334;nucleosome assembly;1.64376808514211e-07!GO:0007010;cytoskeleton organization and biogenesis;1.73324029289977e-07!GO:0048475;coated membrane;1.75665666390638e-07!GO:0030117;membrane coat;1.75665666390638e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.84659994255403e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.84659994255403e-07!GO:0050657;nucleic acid transport;1.87279346428544e-07!GO:0051236;establishment of RNA localization;1.87279346428544e-07!GO:0050658;RNA transport;1.87279346428544e-07!GO:0006084;acetyl-CoA metabolic process;1.88371820592024e-07!GO:0006403;RNA localization;2.01495326243853e-07!GO:0009117;nucleotide metabolic process;2.12529086267609e-07!GO:0009109;coenzyme catabolic process;2.21343394866453e-07!GO:0046034;ATP metabolic process;2.30366309090605e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.43132305063972e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.43132305063972e-07!GO:0008026;ATP-dependent helicase activity;2.65115253643963e-07!GO:0006091;generation of precursor metabolites and energy;2.99151871501181e-07!GO:0019829;cation-transporting ATPase activity;3.31991230880882e-07!GO:0031497;chromatin assembly;3.63252713587916e-07!GO:0016853;isomerase activity;3.66730871898228e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.70389246765659e-07!GO:0016072;rRNA metabolic process;3.71586463660602e-07!GO:0043566;structure-specific DNA binding;4.39010205033303e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.49121860724337e-07!GO:0051170;nuclear import;4.62322111482093e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.69393827410594e-07!GO:0016881;acid-amino acid ligase activity;5.99641096502574e-07!GO:0051246;regulation of protein metabolic process;6.15306855703186e-07!GO:0005768;endosome;7.28756857745412e-07!GO:0044431;Golgi apparatus part;7.87745768703697e-07!GO:0003924;GTPase activity;7.88051943058629e-07!GO:0030029;actin filament-based process;8.25666192378532e-07!GO:0006606;protein import into nucleus;8.26496032428465e-07!GO:0046930;pore complex;8.73289261462822e-07!GO:0007005;mitochondrion organization and biogenesis;9.51351842957618e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.51351842957618e-07!GO:0009108;coenzyme biosynthetic process;1.00389766717599e-06!GO:0016740;transferase activity;1.18344911762246e-06!GO:0005813;centrosome;1.20527932735288e-06!GO:0045259;proton-transporting ATP synthase complex;1.42328202160518e-06!GO:0031252;leading edge;1.45871817851026e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.80031222801426e-06!GO:0016859;cis-trans isomerase activity;1.82128870333233e-06!GO:0016568;chromatin modification;1.87915431205742e-06!GO:0006754;ATP biosynthetic process;2.04290894674441e-06!GO:0006753;nucleoside phosphate metabolic process;2.04290894674441e-06!GO:0005667;transcription factor complex;2.09942831274003e-06!GO:0005762;mitochondrial large ribosomal subunit;2.49760140303711e-06!GO:0000315;organellar large ribosomal subunit;2.49760140303711e-06!GO:0000245;spliceosome assembly;2.64218248064512e-06!GO:0008092;cytoskeletal protein binding;2.8817959938892e-06!GO:0016564;transcription repressor activity;3.276556107781e-06!GO:0016779;nucleotidyltransferase activity;3.43671052724898e-06!GO:0050789;regulation of biological process;3.74136400757372e-06!GO:0005815;microtubule organizing center;3.87721636786678e-06!GO:0032446;protein modification by small protein conjugation;4.09809757727762e-06!GO:0005798;Golgi-associated vesicle;4.28801490011656e-06!GO:0048519;negative regulation of biological process;4.32503878189356e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.43365871611434e-06!GO:0000151;ubiquitin ligase complex;5.11048489935666e-06!GO:0016567;protein ubiquitination;5.60637225017938e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.10030717652678e-06!GO:0051028;mRNA transport;6.12926910591196e-06!GO:0004298;threonine endopeptidase activity;6.55485841453446e-06!GO:0006752;group transfer coenzyme metabolic process;6.77841029588443e-06!GO:0031324;negative regulation of cellular metabolic process;7.15798638694008e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.5327395360127e-06!GO:0006613;cotranslational protein targeting to membrane;1.14012592740912e-05!GO:0003714;transcription corepressor activity;1.14012592740912e-05!GO:0031988;membrane-bound vesicle;1.14012592740912e-05!GO:0008654;phospholipid biosynthetic process;1.30083064386547e-05!GO:0045786;negative regulation of progression through cell cycle;1.30934108792875e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.46576649993762e-05!GO:0043623;cellular protein complex assembly;1.51391625009156e-05!GO:0044440;endosomal part;1.73561264392525e-05!GO:0010008;endosome membrane;1.73561264392525e-05!GO:0030133;transport vesicle;1.74680183704499e-05!GO:0051329;interphase of mitotic cell cycle;1.9241765296055e-05!GO:0031982;vesicle;2.00268886880051e-05!GO:0005819;spindle;2.06890798436519e-05!GO:0003713;transcription coactivator activity;2.2010345392622e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.37115000979692e-05!GO:0045454;cell redox homeostasis;2.4593935809583e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.03945922520795e-05!GO:0016126;sterol biosynthetic process;3.07662391928571e-05!GO:0000139;Golgi membrane;3.27462449119076e-05!GO:0031410;cytoplasmic vesicle;3.28165305482975e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.52197520016401e-05!GO:0042981;regulation of apoptosis;3.68968690862497e-05!GO:0051427;hormone receptor binding;3.81519412158592e-05!GO:0043067;regulation of programmed cell death;4.30016352454246e-05!GO:0006916;anti-apoptosis;4.30895350258564e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.37639216780844e-05!GO:0030867;rough endoplasmic reticulum membrane;4.49407968564538e-05!GO:0009892;negative regulation of metabolic process;4.76335520198975e-05!GO:0006793;phosphorus metabolic process;4.82648861817136e-05!GO:0006796;phosphate metabolic process;4.82648861817136e-05!GO:0003724;RNA helicase activity;5.34772136860672e-05!GO:0005770;late endosome;5.34772136860672e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.11145819894699e-05!GO:0043021;ribonucleoprotein binding;6.61278340553139e-05!GO:0043069;negative regulation of programmed cell death;6.7018254662771e-05!GO:0016563;transcription activator activity;6.72707592381041e-05!GO:0016481;negative regulation of transcription;6.86046175999454e-05!GO:0051325;interphase;6.88228682940659e-05!GO:0043066;negative regulation of apoptosis;7.88129191014147e-05!GO:0000314;organellar small ribosomal subunit;8.05740724358196e-05!GO:0005763;mitochondrial small ribosomal subunit;8.05740724358196e-05!GO:0035257;nuclear hormone receptor binding;8.11199288056262e-05!GO:0005791;rough endoplasmic reticulum;8.1208488365641e-05!GO:0008610;lipid biosynthetic process;8.12223061111903e-05!GO:0006261;DNA-dependent DNA replication;9.12237651657662e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.15714090277515e-05!GO:0019899;enzyme binding;0.000118482323784249!GO:0005525;GTP binding;0.000122312267756688!GO:0016310;phosphorylation;0.00012931804765508!GO:0005048;signal sequence binding;0.000145549852122487!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000152746786373667!GO:0031968;organelle outer membrane;0.000154159655063847!GO:0009165;nucleotide biosynthetic process;0.000186526345625376!GO:0005773;vacuole;0.000189393341750238!GO:0019867;outer membrane;0.000191707002135521!GO:0019222;regulation of metabolic process;0.000192782765475016!GO:0016787;hydrolase activity;0.000192872573858816!GO:0003899;DNA-directed RNA polymerase activity;0.000201444615616586!GO:0000775;chromosome, pericentric region;0.000204470078808406!GO:0050662;coenzyme binding;0.000212179423380761!GO:0005905;coated pit;0.000216547397117432!GO:0051789;response to protein stimulus;0.000220473950918244!GO:0006986;response to unfolded protein;0.000220473950918244!GO:0019843;rRNA binding;0.000239994271381425!GO:0005769;early endosome;0.000240742248033513!GO:0008361;regulation of cell size;0.000248933194352688!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000264002999750171!GO:0033116;ER-Golgi intermediate compartment membrane;0.000278943908167217!GO:0030663;COPI coated vesicle membrane;0.000280422260379986!GO:0030126;COPI vesicle coat;0.000280422260379986!GO:0007051;spindle organization and biogenesis;0.000298004567304714!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000306923285196549!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000315134914128366!GO:0016049;cell growth;0.000331378337621852!GO:0008250;oligosaccharyl transferase complex;0.00035648113360921!GO:0005885;Arp2/3 protein complex;0.000378399271146951!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000394062335030319!GO:0004576;oligosaccharyl transferase activity;0.000410459349732814!GO:0005741;mitochondrial outer membrane;0.000415339470122216!GO:0003729;mRNA binding;0.000427751146514699!GO:0046474;glycerophospholipid biosynthetic process;0.000427751146514699!GO:0006612;protein targeting to membrane;0.000444275365487326!GO:0006695;cholesterol biosynthetic process;0.000478133043467845!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000509134985751391!GO:0051287;NAD binding;0.000536112004202632!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055279990930829!GO:0000786;nucleosome;0.00057934962693673!GO:0032561;guanyl ribonucleotide binding;0.000603566127194609!GO:0019001;guanyl nucleotide binding;0.000603566127194609!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00060984709850471!GO:0001558;regulation of cell growth;0.0006293138863037!GO:0005657;replication fork;0.000641873974603907!GO:0043681;protein import into mitochondrion;0.000658159907772518!GO:0000323;lytic vacuole;0.000690312524706848!GO:0005764;lysosome;0.000690312524706848!GO:0051920;peroxiredoxin activity;0.000743333968029706!GO:0030137;COPI-coated vesicle;0.000762242801995548!GO:0051168;nuclear export;0.000843657462315207!GO:0008186;RNA-dependent ATPase activity;0.000846838271601429!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000912056697366191!GO:0016363;nuclear matrix;0.000912564531320707!GO:0015629;actin cytoskeleton;0.000912564531320707!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000932076092729937!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000932076092729937!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000932076092729937!GO:0000075;cell cycle checkpoint;0.0011311225315973!GO:0044262;cellular carbohydrate metabolic process;0.00114016391766798!GO:0006414;translational elongation;0.00114862732585582!GO:0003690;double-stranded DNA binding;0.00120741432725868!GO:0018196;peptidyl-asparagine modification;0.00125556003831284!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00125556003831284!GO:0019752;carboxylic acid metabolic process;0.00129295345606156!GO:0006082;organic acid metabolic process;0.00134252497763593!GO:0000059;protein import into nucleus, docking;0.00140905509435614!GO:0051252;regulation of RNA metabolic process;0.00154156469061456!GO:0006626;protein targeting to mitochondrion;0.0016373994829298!GO:0043488;regulation of mRNA stability;0.00165338301142516!GO:0043487;regulation of RNA stability;0.00165338301142516!GO:0006891;intra-Golgi vesicle-mediated transport;0.00174392575022841!GO:0030027;lamellipodium;0.00176332996749402!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00183066470591626!GO:0015002;heme-copper terminal oxidase activity;0.00183066470591626!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00183066470591626!GO:0004129;cytochrome-c oxidase activity;0.00183066470591626!GO:0042802;identical protein binding;0.00183959426163991!GO:0030041;actin filament polymerization;0.00193272926081563!GO:0030132;clathrin coat of coated pit;0.00196576870856984!GO:0016044;membrane organization and biogenesis;0.00205069649212395!GO:0051128;regulation of cellular component organization and biogenesis;0.00206917336192303!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00208323964367609!GO:0006402;mRNA catabolic process;0.00219068058142745!GO:0004004;ATP-dependent RNA helicase activity;0.00235996775399054!GO:0008094;DNA-dependent ATPase activity;0.00242932338985033!GO:0048500;signal recognition particle;0.00242986646760729!GO:0046467;membrane lipid biosynthetic process;0.00244772122325789!GO:0000776;kinetochore;0.00244772122325789!GO:0001726;ruffle;0.00245114350839488!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0026032674052903!GO:0016741;transferase activity, transferring one-carbon groups;0.00280092113798191!GO:0030134;ER to Golgi transport vesicle;0.00290539576504306!GO:0008168;methyltransferase activity;0.00292180360514663!GO:0030880;RNA polymerase complex;0.00292489198270642!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00294969390382319!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00294969390382319!GO:0006839;mitochondrial transport;0.00304606736122119!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00311187844698825!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031870634779667!GO:0008154;actin polymerization and/or depolymerization;0.00330494241351415!GO:0003779;actin binding;0.00333755010921504!GO:0030658;transport vesicle membrane;0.00334474183354351!GO:0046483;heterocycle metabolic process;0.00341959832716669!GO:0007050;cell cycle arrest;0.00346408215959946!GO:0048037;cofactor binding;0.00353836950138715!GO:0065007;biological regulation;0.00356102447487538!GO:0006979;response to oxidative stress;0.00356824790252655!GO:0035258;steroid hormone receptor binding;0.00367191704203693!GO:0006383;transcription from RNA polymerase III promoter;0.00372613820741998!GO:0005874;microtubule;0.00381102473342994!GO:0048471;perinuclear region of cytoplasm;0.00384887312720702!GO:0008180;signalosome;0.00384887312720702!GO:0051101;regulation of DNA binding;0.00385935934071426!GO:0046489;phosphoinositide biosynthetic process;0.0041939644403714!GO:0008139;nuclear localization sequence binding;0.00422524064827985!GO:0005637;nuclear inner membrane;0.00422524064827985!GO:0005684;U2-dependent spliceosome;0.00425879366093448!GO:0043284;biopolymer biosynthetic process;0.00437303737822101!GO:0006740;NADPH regeneration;0.00444244969813424!GO:0006098;pentose-phosphate shunt;0.00444244969813424!GO:0006352;transcription initiation;0.00462592823635297!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00475009987342304!GO:0031072;heat shock protein binding;0.00476638956853256!GO:0030127;COPII vesicle coat;0.00476638956853256!GO:0012507;ER to Golgi transport vesicle membrane;0.00476638956853256!GO:0008312;7S RNA binding;0.00481139571081742!GO:0030118;clathrin coat;0.00503857605411751!GO:0004177;aminopeptidase activity;0.0050423778375436!GO:0015631;tubulin binding;0.00509256442938018!GO:0006595;polyamine metabolic process;0.00540060137188771!GO:0006118;electron transport;0.00549021316409927!GO:0030176;integral to endoplasmic reticulum membrane;0.00557328292493593!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0056500342950193!GO:0045047;protein targeting to ER;0.0056500342950193!GO:0030521;androgen receptor signaling pathway;0.00592027267891149!GO:0016408;C-acyltransferase activity;0.00600099356794025!GO:0006302;double-strand break repair;0.0060134690781345!GO:0051539;4 iron, 4 sulfur cluster binding;0.00604528014454188!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00604528014454188!GO:0017166;vinculin binding;0.00611016603987296!GO:0003684;damaged DNA binding;0.00623521397006337!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00624823830657978!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00625819559692344!GO:0000428;DNA-directed RNA polymerase complex;0.00625819559692344!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00641514471770885!GO:0045892;negative regulation of transcription, DNA-dependent;0.00644393946813159!GO:0003682;chromatin binding;0.00660546023914543!GO:0003711;transcription elongation regulator activity;0.00662906615618384!GO:0048522;positive regulation of cellular process;0.00666984801681803!GO:0016197;endosome transport;0.00670299352552451!GO:0051540;metal cluster binding;0.00694822804006228!GO:0051536;iron-sulfur cluster binding;0.00694822804006228!GO:0009112;nucleobase metabolic process;0.00697206157136334!GO:0007243;protein kinase cascade;0.00733964178632175!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00739736518843212!GO:0003678;DNA helicase activity;0.0076574393642081!GO:0031625;ubiquitin protein ligase binding;0.00833695132233859!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00846664773829873!GO:0006650;glycerophospholipid metabolic process;0.00894448183361744!GO:0009081;branched chain family amino acid metabolic process;0.0089992478870167!GO:0022890;inorganic cation transmembrane transporter activity;0.00901315260419784!GO:0003746;translation elongation factor activity;0.00909087025363859!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00918294541377486!GO:0051052;regulation of DNA metabolic process;0.00918777213414745!GO:0006310;DNA recombination;0.00935956543670529!GO:0006733;oxidoreduction coenzyme metabolic process;0.00942886971513622!GO:0007264;small GTPase mediated signal transduction;0.00962066358507523!GO:0003756;protein disulfide isomerase activity;0.00967753445023171!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00967753445023171!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.009681739348199!GO:0033043;regulation of organelle organization and biogenesis;0.009681739348199!GO:0009303;rRNA transcription;0.00969924384489986!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00975334409929108!GO:0051087;chaperone binding;0.00975334409929108!GO:0030660;Golgi-associated vesicle membrane;0.00991907481600789!GO:0005856;cytoskeleton;0.0102725023264566!GO:0007052;mitotic spindle organization and biogenesis;0.0103178866594973!GO:0005869;dynactin complex;0.0103178866594973!GO:0006401;RNA catabolic process;0.0109589240046055!GO:0006289;nucleotide-excision repair;0.0112066697876859!GO:0016584;nucleosome positioning;0.0112921848894952!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0113073019846838!GO:0043022;ribosome binding;0.0113579215245978!GO:0031323;regulation of cellular metabolic process;0.011381261145335!GO:0004674;protein serine/threonine kinase activity;0.0113965091261021!GO:0048487;beta-tubulin binding;0.0115259820161603!GO:0006509;membrane protein ectodomain proteolysis;0.0117242204417126!GO:0033619;membrane protein proteolysis;0.0117242204417126!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0117320265254879!GO:0040008;regulation of growth;0.0117819468837086!GO:0016407;acetyltransferase activity;0.0122298555702582!GO:0031902;late endosome membrane;0.0122574026089467!GO:0006892;post-Golgi vesicle-mediated transport;0.0129668875267873!GO:0001725;stress fiber;0.0129668875267873!GO:0032432;actin filament bundle;0.0129668875267873!GO:0008033;tRNA processing;0.0129701467821058!GO:0006520;amino acid metabolic process;0.012982880921706!GO:0006338;chromatin remodeling;0.0130225932124333!GO:0006778;porphyrin metabolic process;0.0134293729593797!GO:0033013;tetrapyrrole metabolic process;0.0134293729593797!GO:0007093;mitotic cell cycle checkpoint;0.014076367617268!GO:0005832;chaperonin-containing T-complex;0.0141962762576295!GO:0030518;steroid hormone receptor signaling pathway;0.0146205765557903!GO:0006739;NADP metabolic process;0.0150819395095688!GO:0005862;muscle thin filament tropomyosin;0.0151055039263605!GO:0007088;regulation of mitosis;0.015224620363262!GO:0016860;intramolecular oxidoreductase activity;0.0152418535305916!GO:0032508;DNA duplex unwinding;0.0152563513109994!GO:0032392;DNA geometric change;0.0152563513109994!GO:0006350;transcription;0.0152579058847599!GO:0031124;mRNA 3'-end processing;0.0159058781142623!GO:0006268;DNA unwinding during replication;0.0162536826558095!GO:0006405;RNA export from nucleus;0.0164481290778413!GO:0000792;heterochromatin;0.016603569375968!GO:0005876;spindle microtubule;0.0170948546424702!GO:0006769;nicotinamide metabolic process;0.0171640154077275!GO:0005096;GTPase activator activity;0.0172948536654896!GO:0008047;enzyme activator activity;0.017521544506133!GO:0000910;cytokinesis;0.017521544506133!GO:0008629;induction of apoptosis by intracellular signals;0.0175322713409183!GO:0045045;secretory pathway;0.0175449378751577!GO:0006950;response to stress;0.0176106321211157!GO:0004527;exonuclease activity;0.0178366514080097!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0178522875592689!GO:0016251;general RNA polymerase II transcription factor activity;0.0179470456089051!GO:0032984;macromolecular complex disassembly;0.0181360386758108!GO:0005100;Rho GTPase activator activity;0.0187345986319366!GO:0045893;positive regulation of transcription, DNA-dependent;0.0187931851056861!GO:0005865;striated muscle thin filament;0.0188006256972784!GO:0000209;protein polyubiquitination;0.0188471309084903!GO:0015992;proton transport;0.0188751407909862!GO:0000049;tRNA binding;0.0189185651315894!GO:0051098;regulation of binding;0.0190940833611385!GO:0030031;cell projection biogenesis;0.0191351935224453!GO:0000096;sulfur amino acid metabolic process;0.0194908978419981!GO:0006607;NLS-bearing substrate import into nucleus;0.0195157138692076!GO:0000339;RNA cap binding;0.019676420019345!GO:0065009;regulation of a molecular function;0.0198088372620764!GO:0031901;early endosome membrane;0.0198644201997265!GO:0006007;glucose catabolic process;0.0198673059103016!GO:0006818;hydrogen transport;0.0204301767904249!GO:0006220;pyrimidine nucleotide metabolic process;0.0204458320912674!GO:0000082;G1/S transition of mitotic cell cycle;0.0205811978710362!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0207508950293946!GO:0050681;androgen receptor binding;0.0210279730466416!GO:0016125;sterol metabolic process;0.0211057353762563!GO:0044452;nucleolar part;0.0211796251929647!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.021592675994814!GO:0008022;protein C-terminus binding;0.0216416650793263!GO:0040029;regulation of gene expression, epigenetic;0.0217690503947433!GO:0005669;transcription factor TFIID complex;0.0217690503947433!GO:0016272;prefoldin complex;0.0221642337932808!GO:0009116;nucleoside metabolic process;0.0223684807127443!GO:0031529;ruffle organization and biogenesis;0.0223684807127443!GO:0031418;L-ascorbic acid binding;0.0231877924497341!GO:0045941;positive regulation of transcription;0.0243585329141849!GO:0008632;apoptotic program;0.0250661171210576!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0251589177963287!GO:0030125;clathrin vesicle coat;0.0253495219172012!GO:0030665;clathrin coated vesicle membrane;0.0253495219172012!GO:0006376;mRNA splice site selection;0.0255937746694719!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255937746694719!GO:0019798;procollagen-proline dioxygenase activity;0.0262583128963066!GO:0030145;manganese ion binding;0.0265439225594032!GO:0007040;lysosome organization and biogenesis;0.0266512282838817!GO:0035035;histone acetyltransferase binding;0.0270151208743919!GO:0007059;chromosome segregation;0.0270382200363305!GO:0030119;AP-type membrane coat adaptor complex;0.0271021947819013!GO:0032507;maintenance of cellular protein localization;0.0271191900925298!GO:0022415;viral reproductive process;0.0273361394877383!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0275552455371388!GO:0008286;insulin receptor signaling pathway;0.0282783628869878!GO:0043241;protein complex disassembly;0.0284478859256498!GO:0007021;tubulin folding;0.0284572917404257!GO:0006144;purine base metabolic process;0.02856833152197!GO:0006779;porphyrin biosynthetic process;0.0289739616480583!GO:0033014;tetrapyrrole biosynthetic process;0.0289739616480583!GO:0008299;isoprenoid biosynthetic process;0.0295206238415828!GO:0004364;glutathione transferase activity;0.0295514169605444!GO:0033559;unsaturated fatty acid metabolic process;0.0297303842914614!GO:0006636;unsaturated fatty acid biosynthetic process;0.0297303842914614!GO:0030833;regulation of actin filament polymerization;0.0297315272187321!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0300858794005845!GO:0048468;cell development;0.030203602148935!GO:0005758;mitochondrial intermembrane space;0.0310915799466947!GO:0031970;organelle envelope lumen;0.0310921694228196!GO:0031371;ubiquitin conjugating enzyme complex;0.0313057592981041!GO:0006506;GPI anchor biosynthetic process;0.0314238416618352!GO:0051235;maintenance of localization;0.032021713026655!GO:0045792;negative regulation of cell size;0.032021713026655!GO:0009124;nucleoside monophosphate biosynthetic process;0.0320384537128656!GO:0009123;nucleoside monophosphate metabolic process;0.0320384537128656!GO:0005586;collagen type III;0.032120460039797!GO:0031543;peptidyl-proline dioxygenase activity;0.032120460039797!GO:0006611;protein export from nucleus;0.0322396832280354!GO:0000922;spindle pole;0.0322509250530756!GO:0007346;regulation of progression through mitotic cell cycle;0.0324018012599998!GO:0015036;disulfide oxidoreductase activity;0.0325633418822016!GO:0007017;microtubule-based process;0.0326086527566616!GO:0001872;zymosan binding;0.0329575341161486!GO:0001878;response to yeast;0.0329575341161486!GO:0019206;nucleoside kinase activity;0.033413119797332!GO:0032981;mitochondrial respiratory chain complex I assembly;0.033413119797332!GO:0010257;NADH dehydrogenase complex assembly;0.033413119797332!GO:0033108;mitochondrial respiratory chain complex assembly;0.033413119797332!GO:0031123;RNA 3'-end processing;0.033413119797332!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0337772376332797!GO:0015399;primary active transmembrane transporter activity;0.0337772376332797!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339284631866223!GO:0030032;lamellipodium biogenesis;0.0339284631866223!GO:0030659;cytoplasmic vesicle membrane;0.0342352245168808!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0345151500239033!GO:0006505;GPI anchor metabolic process;0.0345961153397011!GO:0030384;phosphoinositide metabolic process;0.035360519890561!GO:0004300;enoyl-CoA hydratase activity;0.0356704423853808!GO:0006497;protein amino acid lipidation;0.0361845154588716!GO:0008097;5S rRNA binding;0.0363097971038418!GO:0050811;GABA receptor binding;0.0366558503845383!GO:0043624;cellular protein complex disassembly;0.0366558503845383!GO:0050178;phenylpyruvate tautomerase activity;0.0372155025718374!GO:0042168;heme metabolic process;0.0374592460527748!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0374592460527748!GO:0006720;isoprenoid metabolic process;0.0374669496280726!GO:0030911;TPR domain binding;0.0376880165773631!GO:0006284;base-excision repair;0.0378699011935128!GO:0007265;Ras protein signal transduction;0.0381658835206446!GO:0030308;negative regulation of cell growth;0.0383092567842032!GO:0017134;fibroblast growth factor binding;0.0385886579710313!GO:0004448;isocitrate dehydrogenase activity;0.0386458149148916!GO:0031272;regulation of pseudopodium formation;0.0387830756758477!GO:0031269;pseudopodium formation;0.0387830756758477!GO:0031344;regulation of cell projection organization and biogenesis;0.0387830756758477!GO:0031268;pseudopodium organization and biogenesis;0.0387830756758477!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0387830756758477!GO:0031274;positive regulation of pseudopodium formation;0.0387830756758477!GO:0006275;regulation of DNA replication;0.0389012837665219!GO:0045185;maintenance of protein localization;0.038915416329628!GO:0042158;lipoprotein biosynthetic process;0.0391670103833924!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0395136027306513!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0395136027306513!GO:0046822;regulation of nucleocytoplasmic transport;0.0396596642316832!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0396865181005484!GO:0042770;DNA damage response, signal transduction;0.0402332489398519!GO:0016453;C-acetyltransferase activity;0.0404664580498352!GO:0007569;cell aging;0.0404700892857083!GO:0005784;translocon complex;0.0405947214478436!GO:0006767;water-soluble vitamin metabolic process;0.0415814190982054!GO:0000228;nuclear chromosome;0.04208644209691!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0431855677406391!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0431855677406391!GO:0010468;regulation of gene expression;0.0436278760571496!GO:0005801;cis-Golgi network;0.0437090462498374!GO:0030131;clathrin adaptor complex;0.0458311473173004!GO:0003988;acetyl-CoA C-acyltransferase activity;0.046372292873399!GO:0030496;midbody;0.0463767122549356!GO:0019362;pyridine nucleotide metabolic process;0.0466798985677228!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0467013452642975!GO:0044438;microbody part;0.0467013452642975!GO:0044439;peroxisomal part;0.0467013452642975!GO:0006541;glutamine metabolic process;0.0469410284546569!GO:0031406;carboxylic acid binding;0.0470513438414081!GO:0030522;intracellular receptor-mediated signaling pathway;0.0472700374839094!GO:0005099;Ras GTPase activator activity;0.0483729581656895!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0485420014243051!GO:0000084;S phase of mitotic cell cycle;0.0486849742312272!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0488847419126212!GO:0004563;beta-N-acetylhexosaminidase activity;0.049098004586052!GO:0043414;biopolymer methylation;0.049098004586052!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0492962065890253!GO:0000178;exosome (RNase complex);0.0492962065890253!GO:0046128;purine ribonucleoside metabolic process;0.0497806510548979!GO:0042278;purine nucleoside metabolic process;0.0497806510548979!GO:0003923;GPI-anchor transamidase activity;0.0497806510548979!GO:0016255;attachment of GPI anchor to protein;0.0497806510548979!GO:0042765;GPI-anchor transamidase complex;0.0497806510548979!GO:0047485;protein N-terminus binding;0.0498037265723803!GO:0006378;mRNA polyadenylation;0.0499016989125527!GO:0006897;endocytosis;0.0499016989125527!GO:0010324;membrane invagination;0.0499016989125527 | |||
|sample_id=11321 | |sample_id=11321 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=RXR{A,B,G}:1.63567627522;TFAP4:1.32251410043;ALX4:1.30106497604;UFEwm:1.24276312641;EVI1:1.22051599898;AIRE:1.2024119148;EN1,2:1.19080668748;ZNF238:1.15004538857;GFI1B:1.12237308607;NR3C1:1.1060293912;YY1:1.0501883064;TAL1_TCF{3,4,12}:1.04194643477;RXRA_VDR{dimer}:1.00678822216;NKX2-2,8:1.00419766616;NKX3-1:0.996300826384;GLI1..3:0.970496492428;POU3F1..4:0.960441738304;PAX4:0.960160397558;GZF1:0.953757544101;NANOG{mouse}:0.94574067209;KLF4:0.942612180793;GFI1:0.874640480147;ATF6:0.832890615544;IKZF1:0.826935653829;NKX2-1,4:0.795772538432;MZF1:0.769554960359;MYBL2:0.767640392342;TOPORS:0.764546531333;EBF1:0.764427917039;ESR1:0.739070218969;CDX1,2,4:0.738435327713;TEAD1:0.737961537358;HOX{A5,B5}:0.735258965889;SRF:0.687132019173;SOX17:0.661963835878;CDC5L:0.658030066516;TFAP2{A,C}:0.629722799251;STAT5{A,B}:0.612027885907;FOXD3:0.594127970115;GTF2A1,2:0.589313567815;PATZ1:0.571868022923;ZIC1..3:0.564686889211;SPZ1:0.556573146745;PAX5:0.54638118889;FOXP1:0.54584361402;TFCP2:0.535618475023;GTF2I:0.525448396878;TLX1..3_NFIC{dimer}:0.506435608203;AR:0.485767095954;XBP1:0.461521736338;ZNF143:0.39869475346;ZBTB16:0.398109402896;PAX1,9:0.386409553511;STAT1,3:0.379637305531;GCM1,2:0.344835912389;HES1:0.34425108929;EGR1..3:0.337214391421;NFY{A,B,C}:0.319811370586;ZNF423:0.319149572571;POU1F1:0.314622076626;E2F1..5:0.287360621102;ZBTB6:0.274831222238;HIC1:0.271930690896;PITX1..3:0.2665624698;NKX2-3_NKX2-5:0.25940235934;NRF1:0.259140783027;SP1:0.256831557407;NKX6-1,2:0.252948372718;NFIX:0.252829709043;TBX4,5:0.248903166245;MYFfamily:0.219632609483;PDX1:0.218892385363;NR6A1:0.212574964413;HOX{A4,D4}:0.211724718601;NHLH1,2:0.210836742594;MEF2{A,B,C,D}:0.206148424139;T:0.200023880795;ONECUT1,2:0.18533057798;MAZ:0.18265275491;LHX3,4:0.176782299548;NFATC1..3:0.172985518054;FOXP3:0.169845494937;SOX5:0.156676334363;PRDM1:0.150563596762;XCPE1{core}:0.150556140811;ZNF148:0.138977412672;TEF:0.127644859589;ELK1,4_GABP{A,B1}:0.125584450946;NR1H4:0.108345050407;TP53:0.104663050694;STAT2,4,6:0.102553123686;HNF4A_NR2F1,2:0.0929389744543;TBP:0.0926999834787;GATA4:0.0737807603549;MTF1:0.057769034821;RREB1:0.0522637640908;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0453174490581;IKZF2:0.0375972875025;DBP:0.0353931248944;NR5A1,2:0.000939311357008;TFDP1:-0.00851487291917;HIF1A:-0.0114370565882;ZNF384:-0.0269287321787;FOXM1:-0.0330222038173;MAFB:-0.0346617331443;FOXO1,3,4:-0.0489492135915;MTE{core}:-0.0563586347028;HNF1A:-0.0582803366022;MED-1{core}:-0.0749874082158;ESRRA:-0.0758498238944;ZFP161:-0.0817606401755;PAX8:-0.0828651659979;DMAP1_NCOR{1,2}_SMARC:-0.0914236895561;SMAD1..7,9:-0.0942448137022;POU6F1:-0.0943041106071;PPARG:-0.096284524379;RFX1:-0.0973426846448;BACH2:-0.0992419897409;ALX1:-0.102749731893;NKX3-2:-0.129886972975;TFAP2B:-0.136441062871;PBX1:-0.150417536263;NFE2L2:-0.161153629442;MYB:-0.177092982772;NFE2L1:-0.187579074659;HLF:-0.192251240553;AHR_ARNT_ARNT2:-0.211363149367;BPTF:-0.22301494087;HSF1,2:-0.268966837986;CREB1:-0.280112009373;FOS_FOS{B,L1}_JUN{B,D}:-0.281753041538;POU2F1..3:-0.283278314036;FOXL1:-0.309052886285;TGIF1:-0.31504104567;PRRX1,2:-0.318518698089;PAX3,7:-0.319591019403;FOSL2:-0.324808597797;HMGA1,2:-0.325973928983;RFX2..5_RFXANK_RFXAP:-0.32638720187;REST:-0.328800062437;CEBPA,B_DDIT3:-0.337420023033;TLX2:-0.354957861542;BREu{core}:-0.362238370863;LMO2:-0.369881577725;RBPJ:-0.37330317269;RUNX1..3:-0.388674306331;NFKB1_REL_RELA:-0.391707193069;IRF1,2:-0.414409899331;NFE2:-0.435757946884;ARID5B:-0.440142022408;HAND1,2:-0.443685506172;FOXA2:-0.446562225923;CUX2:-0.455595972229;HMX1:-0.46875102401;JUN:-0.485579066335;LEF1_TCF7_TCF7L1,2:-0.492532365628;IRF7:-0.527812293612;OCT4_SOX2{dimer}:-0.531024670387;ATF4:-0.548552091127;ELF1,2,4:-0.581192824316;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582314725333;SPI1:-0.591084865636;POU5F1:-0.595808562426;PAX6:-0.602360705078;FOX{D1,D2}:-0.627172569352;ETS1,2:-0.637945218387;SOX{8,9,10}:-0.63909087794;RORA:-0.653145171482;ADNP_IRX_SIX_ZHX:-0.656539654965;NANOG:-0.657903769202;SREBF1,2:-0.658801367699;EP300:-0.663569380783;bHLH_family:-0.689445384128;SPIB:-0.69958071851;NFIL3:-0.702345778868;SOX2:-0.716924753913;HBP1_HMGB_SSRP1_UBTF:-0.773248126231;ATF5_CREB3:-0.789219267725;HOX{A6,A7,B6,B7}:-0.794359363733;FOX{F1,F2,J1}:-0.81433222308;SNAI1..3:-0.8334393329;PAX2:-0.870368526875;FOXN1:-0.870606439361;GATA6:-0.910917288519;CRX:-0.934979334554;HOXA9_MEIS1:-0.938844179458;FOXQ1:-0.966645762427;VSX1,2:-0.984143731881;MYOD1:-1.02672106111;ZEB1:-1.19102817848;ATF2:-1.22987242061;FOX{I1,J2}:-1.37666305646 | |top_motifs=RXR{A,B,G}:1.63567627522;TFAP4:1.32251410043;ALX4:1.30106497604;UFEwm:1.24276312641;EVI1:1.22051599898;AIRE:1.2024119148;EN1,2:1.19080668748;ZNF238:1.15004538857;GFI1B:1.12237308607;NR3C1:1.1060293912;YY1:1.0501883064;TAL1_TCF{3,4,12}:1.04194643477;RXRA_VDR{dimer}:1.00678822216;NKX2-2,8:1.00419766616;NKX3-1:0.996300826384;GLI1..3:0.970496492428;POU3F1..4:0.960441738304;PAX4:0.960160397558;GZF1:0.953757544101;NANOG{mouse}:0.94574067209;KLF4:0.942612180793;GFI1:0.874640480147;ATF6:0.832890615544;IKZF1:0.826935653829;NKX2-1,4:0.795772538432;MZF1:0.769554960359;MYBL2:0.767640392342;TOPORS:0.764546531333;EBF1:0.764427917039;ESR1:0.739070218969;CDX1,2,4:0.738435327713;TEAD1:0.737961537358;HOX{A5,B5}:0.735258965889;SRF:0.687132019173;SOX17:0.661963835878;CDC5L:0.658030066516;TFAP2{A,C}:0.629722799251;STAT5{A,B}:0.612027885907;FOXD3:0.594127970115;GTF2A1,2:0.589313567815;PATZ1:0.571868022923;ZIC1..3:0.564686889211;SPZ1:0.556573146745;PAX5:0.54638118889;FOXP1:0.54584361402;TFCP2:0.535618475023;GTF2I:0.525448396878;TLX1..3_NFIC{dimer}:0.506435608203;AR:0.485767095954;XBP1:0.461521736338;ZNF143:0.39869475346;ZBTB16:0.398109402896;PAX1,9:0.386409553511;STAT1,3:0.379637305531;GCM1,2:0.344835912389;HES1:0.34425108929;EGR1..3:0.337214391421;NFY{A,B,C}:0.319811370586;ZNF423:0.319149572571;POU1F1:0.314622076626;E2F1..5:0.287360621102;ZBTB6:0.274831222238;HIC1:0.271930690896;PITX1..3:0.2665624698;NKX2-3_NKX2-5:0.25940235934;NRF1:0.259140783027;SP1:0.256831557407;NKX6-1,2:0.252948372718;NFIX:0.252829709043;TBX4,5:0.248903166245;MYFfamily:0.219632609483;PDX1:0.218892385363;NR6A1:0.212574964413;HOX{A4,D4}:0.211724718601;NHLH1,2:0.210836742594;MEF2{A,B,C,D}:0.206148424139;T:0.200023880795;ONECUT1,2:0.18533057798;MAZ:0.18265275491;LHX3,4:0.176782299548;NFATC1..3:0.172985518054;FOXP3:0.169845494937;SOX5:0.156676334363;PRDM1:0.150563596762;XCPE1{core}:0.150556140811;ZNF148:0.138977412672;TEF:0.127644859589;ELK1,4_GABP{A,B1}:0.125584450946;NR1H4:0.108345050407;TP53:0.104663050694;STAT2,4,6:0.102553123686;HNF4A_NR2F1,2:0.0929389744543;TBP:0.0926999834787;GATA4:0.0737807603549;MTF1:0.057769034821;RREB1:0.0522637640908;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0453174490581;IKZF2:0.0375972875025;DBP:0.0353931248944;NR5A1,2:0.000939311357008;TFDP1:-0.00851487291917;HIF1A:-0.0114370565882;ZNF384:-0.0269287321787;FOXM1:-0.0330222038173;MAFB:-0.0346617331443;FOXO1,3,4:-0.0489492135915;MTE{core}:-0.0563586347028;HNF1A:-0.0582803366022;MED-1{core}:-0.0749874082158;ESRRA:-0.0758498238944;ZFP161:-0.0817606401755;PAX8:-0.0828651659979;DMAP1_NCOR{1,2}_SMARC:-0.0914236895561;SMAD1..7,9:-0.0942448137022;POU6F1:-0.0943041106071;PPARG:-0.096284524379;RFX1:-0.0973426846448;BACH2:-0.0992419897409;ALX1:-0.102749731893;NKX3-2:-0.129886972975;TFAP2B:-0.136441062871;PBX1:-0.150417536263;NFE2L2:-0.161153629442;MYB:-0.177092982772;NFE2L1:-0.187579074659;HLF:-0.192251240553;AHR_ARNT_ARNT2:-0.211363149367;BPTF:-0.22301494087;HSF1,2:-0.268966837986;CREB1:-0.280112009373;FOS_FOS{B,L1}_JUN{B,D}:-0.281753041538;POU2F1..3:-0.283278314036;FOXL1:-0.309052886285;TGIF1:-0.31504104567;PRRX1,2:-0.318518698089;PAX3,7:-0.319591019403;FOSL2:-0.324808597797;HMGA1,2:-0.325973928983;RFX2..5_RFXANK_RFXAP:-0.32638720187;REST:-0.328800062437;CEBPA,B_DDIT3:-0.337420023033;TLX2:-0.354957861542;BREu{core}:-0.362238370863;LMO2:-0.369881577725;RBPJ:-0.37330317269;RUNX1..3:-0.388674306331;NFKB1_REL_RELA:-0.391707193069;IRF1,2:-0.414409899331;NFE2:-0.435757946884;ARID5B:-0.440142022408;HAND1,2:-0.443685506172;FOXA2:-0.446562225923;CUX2:-0.455595972229;HMX1:-0.46875102401;JUN:-0.485579066335;LEF1_TCF7_TCF7L1,2:-0.492532365628;IRF7:-0.527812293612;OCT4_SOX2{dimer}:-0.531024670387;ATF4:-0.548552091127;ELF1,2,4:-0.581192824316;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582314725333;SPI1:-0.591084865636;POU5F1:-0.595808562426;PAX6:-0.602360705078;FOX{D1,D2}:-0.627172569352;ETS1,2:-0.637945218387;SOX{8,9,10}:-0.63909087794;RORA:-0.653145171482;ADNP_IRX_SIX_ZHX:-0.656539654965;NANOG:-0.657903769202;SREBF1,2:-0.658801367699;EP300:-0.663569380783;bHLH_family:-0.689445384128;SPIB:-0.69958071851;NFIL3:-0.702345778868;SOX2:-0.716924753913;HBP1_HMGB_SSRP1_UBTF:-0.773248126231;ATF5_CREB3:-0.789219267725;HOX{A6,A7,B6,B7}:-0.794359363733;FOX{F1,F2,J1}:-0.81433222308;SNAI1..3:-0.8334393329;PAX2:-0.870368526875;FOXN1:-0.870606439361;GATA6:-0.910917288519;CRX:-0.934979334554;HOXA9_MEIS1:-0.938844179458;FOXQ1:-0.966645762427;VSX1,2:-0.984143731881;MYOD1:-1.02672106111;ZEB1:-1.19102817848;ATF2:-1.22987242061;FOX{I1,J2}:-1.37666305646 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11321-117D7;search_select_hide=table117:FF:11321-117D7 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Skeletal Muscle Satellite Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11964 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11964
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11964
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.713 |
| 10 | 10 | 0.526 |
| 100 | 100 | 0.664 |
| 101 | 101 | 0.654 |
| 102 | 102 | 0.411 |
| 103 | 103 | 0.598 |
| 104 | 104 | 0.883 |
| 105 | 105 | 0.0522 |
| 106 | 106 | 0.00525 |
| 107 | 107 | 0.948 |
| 108 | 108 | 0.896 |
| 109 | 109 | 0.383 |
| 11 | 11 | 0.842 |
| 110 | 110 | 0.096 |
| 111 | 111 | 0.55 |
| 112 | 112 | 0.116 |
| 113 | 113 | 0.136 |
| 114 | 114 | 0.33 |
| 115 | 115 | 0.385 |
| 116 | 116 | 0.211 |
| 117 | 117 | 0.347 |
| 118 | 118 | 0.665 |
| 119 | 119 | 0.487 |
| 12 | 12 | 0.306 |
| 120 | 120 | 0.252 |
| 121 | 121 | 0.524 |
| 122 | 122 | 6.62767e-4 |
| 123 | 123 | 0.0148 |
| 124 | 124 | 0.0398 |
| 125 | 125 | 0.68 |
| 126 | 126 | 0.748 |
| 127 | 127 | 0.0663 |
| 128 | 128 | 0.966 |
| 129 | 129 | 0.078 |
| 13 | 13 | 0.88 |
| 130 | 130 | 0.448 |
| 131 | 131 | 0.806 |
| 132 | 132 | 0.311 |
| 133 | 133 | 0.955 |
| 134 | 134 | 0.464 |
| 135 | 135 | 0.054 |
| 136 | 136 | 0.179 |
| 137 | 137 | 0.0215 |
| 138 | 138 | 0.0492 |
| 139 | 139 | 0.218 |
| 14 | 14 | 0.363 |
| 140 | 140 | 0.219 |
| 141 | 141 | 0.503 |
| 142 | 142 | 0.819 |
| 143 | 143 | 0.0532 |
| 144 | 144 | 0.273 |
| 145 | 145 | 0.996 |
| 146 | 146 | 0.736 |
| 147 | 147 | 0.285 |
| 148 | 148 | 0.154 |
| 149 | 149 | 0.678 |
| 15 | 15 | 0.109 |
| 150 | 150 | 0.569 |
| 151 | 151 | 0.867 |
| 152 | 152 | 0.87 |
| 153 | 153 | 0.901 |
| 154 | 154 | 0.818 |
| 155 | 155 | 0.1 |
| 156 | 156 | 0.0236 |
| 157 | 157 | 0.31 |
| 158 | 158 | 0.0114 |
| 159 | 159 | 0.462 |
| 16 | 16 | 0.419 |
| 160 | 160 | 0.788 |
| 161 | 161 | 0.774 |
| 162 | 162 | 0.0452 |
| 163 | 163 | 0.936 |
| 164 | 164 | 0.256 |
| 165 | 165 | 0.642 |
| 166 | 166 | 0.0874 |
| 167 | 167 | 0.0976 |
| 168 | 168 | 0.175 |
| 169 | 169 | 0.312 |
| 17 | 17 | 0.323 |
| 18 | 18 | 0.611 |
| 19 | 19 | 0.0281 |
| 2 | 2 | 0.756 |
| 20 | 20 | 0.939 |
| 21 | 21 | 0.0733 |
| 22 | 22 | 0.631 |
| 23 | 23 | 0.169 |
| 24 | 24 | 0.185 |
| 25 | 25 | 0.171 |
| 26 | 26 | 0.383 |
| 27 | 27 | 0.644 |
| 28 | 28 | 0.196 |
| 29 | 29 | 0.668 |
| 3 | 3 | 1 |
| 30 | 30 | 0.81 |
| 31 | 31 | 0.805 |
| 32 | 32 | 1.47766e-9 |
| 33 | 33 | 0.993 |
| 34 | 34 | 0.845 |
| 35 | 35 | 0.223 |
| 36 | 36 | 0.038 |
| 37 | 37 | 0.473 |
| 38 | 38 | 0.405 |
| 39 | 39 | 0.474 |
| 4 | 4 | 0.216 |
| 40 | 40 | 0.0202 |
| 41 | 41 | 0.00107 |
| 42 | 42 | 0.55 |
| 43 | 43 | 0.439 |
| 44 | 44 | 0.453 |
| 45 | 45 | 0.227 |
| 46 | 46 | 0.825 |
| 47 | 47 | 0.931 |
| 48 | 48 | 0.972 |
| 49 | 49 | 0.18 |
| 5 | 5 | 0.134 |
| 50 | 50 | 0.583 |
| 51 | 51 | 0.945 |
| 52 | 52 | 0.587 |
| 53 | 53 | 0.241 |
| 54 | 54 | 0.792 |
| 55 | 55 | 0.635 |
| 56 | 56 | 0.837 |
| 57 | 57 | 0.57 |
| 58 | 58 | 0.0962 |
| 59 | 59 | 0.853 |
| 6 | 6 | 0.919 |
| 60 | 60 | 0.0688 |
| 61 | 61 | 0.788 |
| 62 | 62 | 0.0983 |
| 63 | 63 | 0.777 |
| 64 | 64 | 0.602 |
| 65 | 65 | 0.563 |
| 66 | 66 | 0.673 |
| 67 | 67 | 0.487 |
| 68 | 68 | 0.19 |
| 69 | 69 | 0.675 |
| 7 | 7 | 0.18 |
| 70 | 70 | 0.303 |
| 71 | 71 | 0.944 |
| 72 | 72 | 0.441 |
| 73 | 73 | 0.344 |
| 74 | 74 | 0.243 |
| 75 | 75 | 0.819 |
| 76 | 76 | 0.458 |
| 77 | 77 | 0.949 |
| 78 | 78 | 0.302 |
| 79 | 79 | 0.00944 |
| 8 | 8 | 0.821 |
| 80 | 80 | 0.0147 |
| 81 | 81 | 0.577 |
| 82 | 82 | 0.729 |
| 83 | 83 | 0.0476 |
| 84 | 84 | 0.801 |
| 85 | 85 | 0.0961 |
| 86 | 86 | 0.624 |
| 87 | 87 | 0.336 |
| 88 | 88 | 0.463 |
| 89 | 89 | 0.571 |
| 9 | 9 | 0.987 |
| 90 | 90 | 0.469 |
| 91 | 91 | 0.566 |
| 92 | 92 | 0.649 |
| 93 | 93 | 0.975 |
| 94 | 94 | 0.315 |
| 95 | 95 | 0.852 |
| 96 | 96 | 0.259 |
| 97 | 97 | 0.983 |
| 98 | 98 | 0.2 |
| 99 | 99 | 1.92586e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11964
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000165 human skeletal muscle satellite cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
