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{{f5samples
{{f5samples
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|accession_numbers=CAGE;DRX008390;DRR009262;DRZ000687;DRZ002072;DRZ012037;DRZ013422
|accession_numbers_RNASeq=sRNA-Seq;DRX037030;DRR041396;DRZ007038
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|comment=
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|def=
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Line 35: Line 44:
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg38.nobarcode.bam
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|id=FF:11353-117H3
|id=FF:11353-117H3
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CGTACG.11353
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11353
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CGTACG.11353
|name=Osteoblast - differentiated, donor2
|name=Osteoblast - differentiated, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|rna_box=117
|rna_box=117
|rna_catalog_number=CA406D-R10f
|rna_catalog_number=CA406D-R10f
Line 56: Line 82:
|rna_tube_id=117H3
|rna_tube_id=117H3
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.CGTACG
|sample_age=embryo 22week
|sample_age=embryo 22week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=U
|sample_ethnicity=U
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.21197798757309e-278!GO:0005737;cytoplasm;3.59218102438898e-176!GO:0044444;cytoplasmic part;7.02688024483716e-144!GO:0043226;organelle;3.35081774912401e-106!GO:0043229;intracellular organelle;4.69200132311535e-106!GO:0043231;intracellular membrane-bound organelle;4.69200132311535e-106!GO:0043227;membrane-bound organelle;8.98622276133899e-106!GO:0044422;organelle part;1.94222324058923e-92!GO:0044446;intracellular organelle part;1.9411689171655e-91!GO:0005739;mitochondrion;3.0595309985487e-68!GO:0032991;macromolecular complex;2.02734346114772e-66!GO:0030529;ribonucleoprotein complex;8.39696536772402e-66!GO:0005515;protein binding;9.45767274518311e-62!GO:0031090;organelle membrane;5.03281225573852e-51!GO:0005840;ribosome;1.26373063660738e-49!GO:0009058;biosynthetic process;1.3535280220406e-46!GO:0044237;cellular metabolic process;2.73349669674543e-45!GO:0003735;structural constituent of ribosome;1.23662014555414e-44!GO:0044238;primary metabolic process;1.24702414374537e-44!GO:0043233;organelle lumen;4.04704095939119e-44!GO:0031974;membrane-enclosed lumen;4.04704095939119e-44!GO:0044429;mitochondrial part;3.39521060897609e-43!GO:0006412;translation;2.24466844891968e-42!GO:0019538;protein metabolic process;5.05413372628315e-41!GO:0033279;ribosomal subunit;3.43810072909048e-40!GO:0009059;macromolecule biosynthetic process;6.88167242069907e-40!GO:0003723;RNA binding;3.94025037733652e-39!GO:0044249;cellular biosynthetic process;6.38654853722024e-39!GO:0005829;cytosol;2.00053331249278e-37!GO:0044260;cellular macromolecule metabolic process;4.19192124477811e-37!GO:0044267;cellular protein metabolic process;1.19581216654255e-35!GO:0043170;macromolecule metabolic process;8.3435871062163e-35!GO:0044428;nuclear part;1.19765494294681e-32!GO:0031967;organelle envelope;1.70740077079229e-32!GO:0043234;protein complex;1.8592653118428e-32!GO:0031975;envelope;3.26653653788494e-32!GO:0015031;protein transport;3.5334395488878e-32!GO:0033036;macromolecule localization;6.59602647921504e-32!GO:0045184;establishment of protein localization;6.14157491676358e-31!GO:0008104;protein localization;1.38468107238335e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.13540141092496e-29!GO:0016043;cellular component organization and biogenesis;1.20462063179795e-29!GO:0005740;mitochondrial envelope;2.57380686298601e-29!GO:0031966;mitochondrial membrane;9.78649591700599e-28!GO:0019866;organelle inner membrane;7.60498653561258e-27!GO:0006396;RNA processing;6.48166733680362e-26!GO:0005743;mitochondrial inner membrane;1.21865098145326e-25!GO:0005783;endoplasmic reticulum;9.47012577139705e-24!GO:0044445;cytosolic part;1.79207425087714e-22!GO:0046907;intracellular transport;2.88478652925744e-22!GO:0016071;mRNA metabolic process;3.14262951611143e-22!GO:0006119;oxidative phosphorylation;5.32929384969741e-22!GO:0015934;large ribosomal subunit;4.97139958595753e-21!GO:0065003;macromolecular complex assembly;9.39124775496511e-21!GO:0044432;endoplasmic reticulum part;2.14029444222542e-20!GO:0015935;small ribosomal subunit;3.65794359381251e-20!GO:0006886;intracellular protein transport;7.45749247667721e-20!GO:0044455;mitochondrial membrane part;8.81298051509357e-20!GO:0031981;nuclear lumen;9.62483113732817e-20!GO:0012505;endomembrane system;1.89547528515023e-19!GO:0008380;RNA splicing;3.5042534150053e-19!GO:0048770;pigment granule;4.74188066968294e-19!GO:0042470;melanosome;4.74188066968294e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.20747384721974e-19!GO:0006397;mRNA processing;9.6032844732237e-19!GO:0051186;cofactor metabolic process;1.46962997085131e-18!GO:0006457;protein folding;7.55454997966428e-18!GO:0031980;mitochondrial lumen;8.90784411781701e-18!GO:0005759;mitochondrial matrix;8.90784411781701e-18!GO:0022607;cellular component assembly;1.44253220988794e-17!GO:0005746;mitochondrial respiratory chain;1.53657919659489e-17!GO:0005794;Golgi apparatus;2.11374502949348e-17!GO:0005634;nucleus;2.49024635999665e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.54748022070191e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.72358153758018e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.24194552576644e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.30531117674257e-15!GO:0016462;pyrophosphatase activity;8.59811523590648e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;8.96721390199451e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.34023947749703e-15!GO:0003954;NADH dehydrogenase activity;9.34023947749703e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.34023947749703e-15!GO:0006732;coenzyme metabolic process;9.69003664842714e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05288431971515e-14!GO:0005789;endoplasmic reticulum membrane;2.12790371516164e-14!GO:0005681;spliceosome;4.66680780847651e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.80890154306781e-14!GO:0005761;mitochondrial ribosome;5.98385232439492e-14!GO:0000313;organellar ribosome;5.98385232439492e-14!GO:0017111;nucleoside-triphosphatase activity;1.11305336678688e-13!GO:0016491;oxidoreductase activity;2.76934245464713e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.23447515908093e-13!GO:0043228;non-membrane-bound organelle;4.01825666695395e-13!GO:0043232;intracellular non-membrane-bound organelle;4.01825666695395e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.76447049647206e-13!GO:0042773;ATP synthesis coupled electron transport;5.76447049647206e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.86265008125317e-13!GO:0045271;respiratory chain complex I;5.86265008125317e-13!GO:0005747;mitochondrial respiratory chain complex I;5.86265008125317e-13!GO:0051082;unfolded protein binding;6.38677146209539e-13!GO:0006996;organelle organization and biogenesis;9.9078331526713e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.22071815519188e-12!GO:0051649;establishment of cellular localization;2.52926058926137e-12!GO:0022618;protein-RNA complex assembly;3.03612625632613e-12!GO:0051641;cellular localization;3.63709162907421e-12!GO:0006605;protein targeting;3.6915953299507e-12!GO:0008134;transcription factor binding;1.14536988210477e-11!GO:0005654;nucleoplasm;2.42408314121388e-11!GO:0009055;electron carrier activity;4.01267710112127e-11!GO:0008135;translation factor activity, nucleic acid binding;4.66607445147563e-11!GO:0043285;biopolymer catabolic process;1.32896832030019e-10!GO:0016874;ligase activity;1.49600382244883e-10!GO:0009057;macromolecule catabolic process;1.50629205640797e-10!GO:0044248;cellular catabolic process;1.7182475245435e-10!GO:0048193;Golgi vesicle transport;1.77472864347412e-10!GO:0012501;programmed cell death;3.35239780836638e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.16120807214211e-10!GO:0044451;nucleoplasm part;4.85592436056273e-10!GO:0044265;cellular macromolecule catabolic process;5.31460192669599e-10!GO:0010467;gene expression;7.04087903567566e-10!GO:0006915;apoptosis;1.07192531627953e-09!GO:0005793;ER-Golgi intermediate compartment;1.17907552670688e-09!GO:0005730;nucleolus;1.44110671960355e-09!GO:0008219;cell death;2.06220385805727e-09!GO:0016265;death;2.06220385805727e-09!GO:0051188;cofactor biosynthetic process;2.50432539130739e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.16931096670695e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.32150569314531e-09!GO:0005773;vacuole;3.5919775149986e-09!GO:0006091;generation of precursor metabolites and energy;3.65683061791024e-09!GO:0016192;vesicle-mediated transport;3.73099527407726e-09!GO:0006512;ubiquitin cycle;4.37262565047177e-09!GO:0043283;biopolymer metabolic process;5.03790119138146e-09!GO:0030163;protein catabolic process;9.4657314110575e-09!GO:0009150;purine ribonucleotide metabolic process;9.78690423534785e-09!GO:0009259;ribonucleotide metabolic process;1.19746778569061e-08!GO:0006163;purine nucleotide metabolic process;1.24054803354693e-08!GO:0003743;translation initiation factor activity;2.08013365473778e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.37529095480551e-08!GO:0015986;ATP synthesis coupled proton transport;2.42680730217243e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.42680730217243e-08!GO:0006164;purine nucleotide biosynthetic process;3.22059354731697e-08!GO:0019829;cation-transporting ATPase activity;3.30187036926635e-08!GO:0009060;aerobic respiration;4.01133292300588e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009141;nucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.94274035256225e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;5.78701102580732e-08!GO:0000323;lytic vacuole;5.98024195979632e-08!GO:0005764;lysosome;5.98024195979632e-08!GO:0006413;translational initiation;6.01851960301434e-08!GO:0044431;Golgi apparatus part;6.04061026051889e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.27613331290574e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.27613331290574e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.04677118008329e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.04677118008329e-08!GO:0009260;ribonucleotide biosynthetic process;7.57367317751617e-08!GO:0000166;nucleotide binding;7.57945879275955e-08!GO:0005788;endoplasmic reticulum lumen;8.06082895991586e-08!GO:0019941;modification-dependent protein catabolic process;8.50679150031505e-08!GO:0043632;modification-dependent macromolecule catabolic process;8.50679150031505e-08!GO:0044257;cellular protein catabolic process;8.90794400789373e-08!GO:0006446;regulation of translational initiation;1.14550131606961e-07!GO:0043412;biopolymer modification;1.15636561043509e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.20291280581804e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.43717040027634e-07!GO:0000375;RNA splicing, via transesterification reactions;1.43717040027634e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.43717040027634e-07!GO:0006511;ubiquitin-dependent protein catabolic process;1.58441857463948e-07!GO:0046034;ATP metabolic process;1.69741741600899e-07!GO:0006754;ATP biosynthetic process;1.76748327228646e-07!GO:0006753;nucleoside phosphate metabolic process;1.76748327228646e-07!GO:0003712;transcription cofactor activity;1.84527500727329e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.85066242082859e-07!GO:0017038;protein import;1.93963045615756e-07!GO:0005768;endosome;2.58978000590207e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.73670262730857e-07!GO:0045333;cellular respiration;2.91555471647603e-07!GO:0003924;GTPase activity;2.92431721047293e-07!GO:0008565;protein transporter activity;2.99148630970001e-07!GO:0042254;ribosome biogenesis and assembly;3.28091118764616e-07!GO:0006913;nucleocytoplasmic transport;4.42015278442016e-07!GO:0009108;coenzyme biosynthetic process;4.46677276007022e-07!GO:0006464;protein modification process;4.52084244492106e-07!GO:0048523;negative regulation of cellular process;5.16721333617299e-07!GO:0009056;catabolic process;5.64630601443673e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.37774895005342e-07!GO:0006259;DNA metabolic process;6.93750710825485e-07!GO:0051169;nuclear transport;7.14983291069899e-07!GO:0031988;membrane-bound vesicle;9.78511632240183e-07!GO:0042623;ATPase activity, coupled;1.03262623524617e-06!GO:0016887;ATPase activity;1.11361571843322e-06!GO:0044262;cellular carbohydrate metabolic process;1.24965491333077e-06!GO:0006461;protein complex assembly;1.34626243514783e-06!GO:0045786;negative regulation of progression through cell cycle;1.38688259003484e-06!GO:0009117;nucleotide metabolic process;1.39324010772772e-06!GO:0003714;transcription corepressor activity;1.58151150660323e-06!GO:0051187;cofactor catabolic process;2.10468404250363e-06!GO:0031252;leading edge;2.12668568447289e-06!GO:0008639;small protein conjugating enzyme activity;2.29907171109364e-06!GO:0048519;negative regulation of biological process;2.7064775392625e-06!GO:0030120;vesicle coat;2.9885108845778e-06!GO:0030662;coated vesicle membrane;2.9885108845778e-06!GO:0016049;cell growth;3.31888223750146e-06!GO:0006099;tricarboxylic acid cycle;3.33420376579376e-06!GO:0046356;acetyl-CoA catabolic process;3.33420376579376e-06!GO:0007005;mitochondrion organization and biogenesis;3.47126450003294e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.72295064883555e-06!GO:0045259;proton-transporting ATP synthase complex;3.81544238513426e-06!GO:0048475;coated membrane;3.85456393966404e-06!GO:0030117;membrane coat;3.85456393966404e-06!GO:0008361;regulation of cell size;3.9636613063937e-06!GO:0000139;Golgi membrane;4.4006975077918e-06!GO:0017076;purine nucleotide binding;4.73573656678766e-06!GO:0043067;regulation of programmed cell death;4.73573656678766e-06!GO:0032553;ribonucleotide binding;4.73573656678766e-06!GO:0032555;purine ribonucleotide binding;4.73573656678766e-06!GO:0004842;ubiquitin-protein ligase activity;4.84022646745915e-06!GO:0005770;late endosome;4.84022646745915e-06!GO:0009109;coenzyme catabolic process;5.20516183005832e-06!GO:0005762;mitochondrial large ribosomal subunit;5.50044267567436e-06!GO:0000315;organellar large ribosomal subunit;5.50044267567436e-06!GO:0006752;group transfer coenzyme metabolic process;6.03161121621489e-06!GO:0042981;regulation of apoptosis;6.1917415032027e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.45302292208768e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.45302292208768e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.45302292208768e-06!GO:0016787;hydrolase activity;8.03244533227691e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.59746956266848e-06!GO:0016604;nuclear body;9.28067429039894e-06!GO:0019787;small conjugating protein ligase activity;9.3947212545354e-06!GO:0045454;cell redox homeostasis;9.57897939058388e-06!GO:0006084;acetyl-CoA metabolic process;9.95273220747648e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.0009276563515e-05!GO:0001558;regulation of cell growth;1.0214396300219e-05!GO:0008654;phospholipid biosynthetic process;1.21467617572906e-05!GO:0005635;nuclear envelope;1.35120606415663e-05!GO:0043038;amino acid activation;1.35682107839072e-05!GO:0006418;tRNA aminoacylation for protein translation;1.35682107839072e-05!GO:0043039;tRNA aminoacylation;1.35682107839072e-05!GO:0016853;isomerase activity;1.4261091842141e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.48344318528565e-05!GO:0006916;anti-apoptosis;1.78398683136538e-05!GO:0051246;regulation of protein metabolic process;1.78398683136538e-05!GO:0016564;transcription repressor activity;1.7911832111779e-05!GO:0031982;vesicle;1.92903588490165e-05!GO:0008610;lipid biosynthetic process;2.04154673096738e-05!GO:0031410;cytoplasmic vesicle;2.08737616736189e-05!GO:0051789;response to protein stimulus;2.11313853160265e-05!GO:0006986;response to unfolded protein;2.11313853160265e-05!GO:0043069;negative regulation of programmed cell death;2.20125974467748e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.52994351486412e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.53907866008871e-05!GO:0015399;primary active transmembrane transporter activity;2.53907866008871e-05!GO:0004298;threonine endopeptidase activity;2.71475976453362e-05!GO:0005905;coated pit;2.75586902958762e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.69622753012317e-05!GO:0006082;organic acid metabolic process;3.78461425712122e-05!GO:0031965;nuclear membrane;3.78689198757773e-05!GO:0005525;GTP binding;3.94385244894995e-05!GO:0019752;carboxylic acid metabolic process;4.4815072608993e-05!GO:0016881;acid-amino acid ligase activity;4.50613718976828e-05!GO:0043066;negative regulation of apoptosis;4.68532218937736e-05!GO:0051726;regulation of cell cycle;4.70151945601771e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.90944156556091e-05!GO:0000074;regulation of progression through cell cycle;4.93274920094825e-05!GO:0019843;rRNA binding;5.18939155207392e-05!GO:0006399;tRNA metabolic process;5.58954751351808e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.78398370968841e-05!GO:0044440;endosomal part;5.78724699778657e-05!GO:0010008;endosome membrane;5.78724699778657e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;6.35630069254983e-05!GO:0005798;Golgi-associated vesicle;0.000104888129021825!GO:0006364;rRNA processing;0.000106257549538433!GO:0016126;sterol biosynthetic process;0.000106901797798058!GO:0016072;rRNA metabolic process;0.00010744160277124!GO:0005048;signal sequence binding;0.000122918515359293!GO:0005791;rough endoplasmic reticulum;0.000131993695615107!GO:0043687;post-translational protein modification;0.000173621459657835!GO:0032561;guanyl ribonucleotide binding;0.000182713786005939!GO:0019001;guanyl nucleotide binding;0.000182713786005939!GO:0033116;ER-Golgi intermediate compartment membrane;0.000195868671393538!GO:0043492;ATPase activity, coupled to movement of substances;0.000204448231342326!GO:0030133;transport vesicle;0.000209169919830565!GO:0040008;regulation of growth;0.000216872447080909!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000216872447080909!GO:0016607;nuclear speck;0.000219751830544899!GO:0051170;nuclear import;0.000219751830544899!GO:0006606;protein import into nucleus;0.000219751830544899!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000239518267854571!GO:0030867;rough endoplasmic reticulum membrane;0.000243975059599864!GO:0065004;protein-DNA complex assembly;0.000305517193901687!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000312612995835101!GO:0000314;organellar small ribosomal subunit;0.000319073288835431!GO:0005763;mitochondrial small ribosomal subunit;0.000319073288835431!GO:0005975;carbohydrate metabolic process;0.00034267222952662!GO:0044453;nuclear membrane part;0.000347047238477944!GO:0016859;cis-trans isomerase activity;0.000385920916184813!GO:0006118;electron transport;0.000412090193033479!GO:0003697;single-stranded DNA binding;0.000413719708069179!GO:0030176;integral to endoplasmic reticulum membrane;0.00042152848989416!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000427054694774395!GO:0000245;spliceosome assembly;0.00044890960224329!GO:0007050;cell cycle arrest;0.000458564335920876!GO:0004576;oligosaccharyl transferase activity;0.000528569076469392!GO:0006613;cotranslational protein targeting to membrane;0.000569338733114693!GO:0008250;oligosaccharyl transferase complex;0.000572225447149174!GO:0006366;transcription from RNA polymerase II promoter;0.00061454743366383!GO:0065002;intracellular protein transport across a membrane;0.00061454743366383!GO:0006323;DNA packaging;0.000638521452747552!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00064622909452761!GO:0000151;ubiquitin ligase complex;0.000685455196633212!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000696878603153188!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000705869918895845!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000714984039772227!GO:0015002;heme-copper terminal oxidase activity;0.000714984039772227!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000714984039772227!GO:0004129;cytochrome-c oxidase activity;0.000714984039772227!GO:0009165;nucleotide biosynthetic process;0.000734829706847955!GO:0046474;glycerophospholipid biosynthetic process;0.000737725621945607!GO:0065009;regulation of a molecular function;0.000756134101172545!GO:0019899;enzyme binding;0.000756134101172545!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000853624282360018!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000862201585061892!GO:0005885;Arp2/3 protein complex;0.000888857082389828!GO:0046467;membrane lipid biosynthetic process;0.000894166304047692!GO:0019867;outer membrane;0.000989103121688263!GO:0006509;membrane protein ectodomain proteolysis;0.00108051623869138!GO:0033619;membrane protein proteolysis;0.00108051623869138!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00108814035267768!GO:0016044;membrane organization and biogenesis;0.00115863699489818!GO:0044255;cellular lipid metabolic process;0.00118586689279277!GO:0005524;ATP binding;0.00120840631641694!GO:0008026;ATP-dependent helicase activity;0.00121772519734836!GO:0007040;lysosome organization and biogenesis;0.00124011488720903!GO:0051920;peroxiredoxin activity;0.00128613777312625!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00128775542679095!GO:0043566;structure-specific DNA binding;0.00133039482299061!GO:0007033;vacuole organization and biogenesis;0.00133039482299061!GO:0032559;adenyl ribonucleotide binding;0.00145269080503141!GO:0031968;organelle outer membrane;0.00153568532357985!GO:0006333;chromatin assembly or disassembly;0.00157874796488995!GO:0006334;nucleosome assembly;0.00159411560343814!GO:0030554;adenyl nucleotide binding;0.00159411560343814!GO:0048468;cell development;0.00167746469273075!GO:0005667;transcription factor complex;0.00168234788167209!GO:0043681;protein import into mitochondrion;0.0017102486523629!GO:0030145;manganese ion binding;0.00178148424538951!GO:0006695;cholesterol biosynthetic process;0.0018207220346427!GO:0006790;sulfur metabolic process;0.00190158981066633!GO:0016125;sterol metabolic process;0.00190242056669581!GO:0005774;vacuolar membrane;0.00198398634346407!GO:0005741;mitochondrial outer membrane;0.00202722150071857!GO:0007049;cell cycle;0.00204425953186313!GO:0016567;protein ubiquitination;0.00204425953186313!GO:0031324;negative regulation of cellular metabolic process;0.00215043126594157!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00220702566164151!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00220702566164151!GO:0018196;peptidyl-asparagine modification;0.00226321638923!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00226321638923!GO:0030132;clathrin coat of coated pit;0.00231539849377912!GO:0043284;biopolymer biosynthetic process;0.00247796880923643!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00259329099165014!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00260032900670119!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262846227629369!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262846227629369!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262846227629369!GO:0030118;clathrin coat;0.00263245136703271!GO:0006807;nitrogen compound metabolic process;0.00265137850258637!GO:0016563;transcription activator activity;0.00265137850258637!GO:0030036;actin cytoskeleton organization and biogenesis;0.00273429895692817!GO:0043433;negative regulation of transcription factor activity;0.00280794978885784!GO:0032446;protein modification by small protein conjugation;0.00296948890319476!GO:0003746;translation elongation factor activity;0.00323682386050054!GO:0051101;regulation of DNA binding;0.00329918284364537!GO:0009892;negative regulation of metabolic process;0.00333395299967426!GO:0030663;COPI coated vesicle membrane;0.00334572505597409!GO:0030126;COPI vesicle coat;0.00334572505597409!GO:0015992;proton transport;0.00338920676907302!GO:0006793;phosphorus metabolic process;0.00348032586630119!GO:0006796;phosphate metabolic process;0.00348032586630119!GO:0006778;porphyrin metabolic process;0.00350881805961318!GO:0033013;tetrapyrrole metabolic process;0.00350881805961318!GO:0006612;protein targeting to membrane;0.00350948711793914!GO:0030027;lamellipodium;0.00369187927794964!GO:0030137;COPI-coated vesicle;0.00374723026144829!GO:0016860;intramolecular oxidoreductase activity;0.00381825288499888!GO:0006818;hydrogen transport;0.00392942037461538!GO:0016740;transferase activity;0.00398510236547066!GO:0044437;vacuolar part;0.0040911292858881!GO:0031301;integral to organelle membrane;0.00419830309548741!GO:0005769;early endosome;0.00419830309548741!GO:0006979;response to oxidative stress;0.00419830309548741!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00432097841241622!GO:0006626;protein targeting to mitochondrion;0.00434944582743089!GO:0031072;heat shock protein binding;0.00442634855884997!GO:0001726;ruffle;0.00458494641678817!GO:0043623;cellular protein complex assembly;0.00465741589221748!GO:0043021;ribonucleoprotein binding;0.00465741589221748!GO:0051098;regulation of binding;0.00465741589221748!GO:0005643;nuclear pore;0.00480241606226632!GO:0031497;chromatin assembly;0.00488694607863422!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00496461938931531!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00501302187977521!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00501302187977521!GO:0031902;late endosome membrane;0.00523760268247813!GO:0005777;peroxisome;0.00528419748461111!GO:0042579;microbody;0.00528419748461111!GO:0006891;intra-Golgi vesicle-mediated transport;0.00548002312211747!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00553034665049858!GO:0046930;pore complex;0.00555349055545016!GO:0007006;mitochondrial membrane organization and biogenesis;0.00561831368479763!GO:0048471;perinuclear region of cytoplasm;0.00601469050315132!GO:0008092;cytoskeletal protein binding;0.00608471202640334!GO:0008632;apoptotic program;0.00629198785953103!GO:0046519;sphingoid metabolic process;0.00635015359214632!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00636472290567852!GO:0009308;amine metabolic process;0.00653323120826606!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00673876561703276!GO:0006974;response to DNA damage stimulus;0.00684792578987242!GO:0030503;regulation of cell redox homeostasis;0.00700215829664937!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00701972752459452!GO:0006839;mitochondrial transport;0.00721278488050106!GO:0006643;membrane lipid metabolic process;0.00721278488050106!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00748602468764539!GO:0045792;negative regulation of cell size;0.00767721348678292!GO:0006629;lipid metabolic process;0.00796376118402438!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00824240964385298!GO:0016310;phosphorylation;0.00824240964385298!GO:0008637;apoptotic mitochondrial changes;0.0082597115978485!GO:0043488;regulation of mRNA stability;0.00830226131284661!GO:0043487;regulation of RNA stability;0.00830226131284661!GO:0045936;negative regulation of phosphate metabolic process;0.00851099388556161!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00854536759513353!GO:0003713;transcription coactivator activity;0.00856510454979252!GO:0006749;glutathione metabolic process;0.00856923843659572!GO:0042168;heme metabolic process;0.00856923843659572!GO:0030308;negative regulation of cell growth;0.00875767637568832!GO:0030029;actin filament-based process;0.00884515145481056!GO:0050662;coenzyme binding;0.00925769538505477!GO:0017166;vinculin binding;0.0092851233797137!GO:0006779;porphyrin biosynthetic process;0.00952856433908394!GO:0033014;tetrapyrrole biosynthetic process;0.00952856433908394!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00957933559340139!GO:0005765;lysosomal membrane;0.00970729743825014!GO:0051235;maintenance of localization;0.00996818442184009!GO:0006650;glycerophospholipid metabolic process;0.0102571065693888!GO:0005520;insulin-like growth factor binding;0.0105451669356331!GO:0001527;microfibril;0.0106676131639263!GO:0006354;RNA elongation;0.0109536772828478!GO:0000902;cell morphogenesis;0.0110779060440237!GO:0032989;cellular structure morphogenesis;0.0110779060440237!GO:0032507;maintenance of cellular protein localization;0.0111284526972536!GO:0051427;hormone receptor binding;0.0115091233137848!GO:0006022;aminoglycan metabolic process;0.0116738225704142!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0118247531852344!GO:0048522;positive regulation of cellular process;0.0120922595899002!GO:0008286;insulin receptor signaling pathway;0.0122685950039424!GO:0035035;histone acetyltransferase binding;0.0124648363549019!GO:0004386;helicase activity;0.0127033603990424!GO:0007243;protein kinase cascade;0.0131393978617063!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0132843184411832!GO:0003724;RNA helicase activity;0.0133349539914715!GO:0006672;ceramide metabolic process;0.0133349539914715!GO:0006740;NADPH regeneration;0.0137829983627806!GO:0006098;pentose-phosphate shunt;0.0137829983627806!GO:0030125;clathrin vesicle coat;0.0142045958493093!GO:0030665;clathrin coated vesicle membrane;0.0142045958493093!GO:0050811;GABA receptor binding;0.0144280969440055!GO:0000049;tRNA binding;0.0144280969440055!GO:0006520;amino acid metabolic process;0.0144459971321185!GO:0009719;response to endogenous stimulus;0.0144982991813235!GO:0046483;heterocycle metabolic process;0.0144982991813235!GO:0000096;sulfur amino acid metabolic process;0.0147663026794031!GO:0016568;chromatin modification;0.0149305578448963!GO:0006414;translational elongation;0.0156148717086996!GO:0006595;polyamine metabolic process;0.0164588310208933!GO:0046489;phosphoinositide biosynthetic process;0.0164958840899696!GO:0048487;beta-tubulin binding;0.0166686904540476!GO:0051287;NAD binding;0.0167354088888611!GO:0031418;L-ascorbic acid binding;0.0169350800778259!GO:0008203;cholesterol metabolic process;0.0169360449869672!GO:0031300;intrinsic to organelle membrane;0.0170361119985318!GO:0016408;C-acyltransferase activity;0.0172998021065722!GO:0000785;chromatin;0.0173393300258773!GO:0030658;transport vesicle membrane;0.0179878028784494!GO:0001836;release of cytochrome c from mitochondria;0.0183278808878718!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.018453722264459!GO:0045185;maintenance of protein localization;0.0184714812030947!GO:0051128;regulation of cellular component organization and biogenesis;0.0187041617340197!GO:0030203;glycosaminoglycan metabolic process;0.0188227314007963!GO:0051651;maintenance of cellular localization;0.0189488998853155!GO:0035257;nuclear hormone receptor binding;0.0196167389333575!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0196460735034229!GO:0030119;AP-type membrane coat adaptor complex;0.0198295747732601!GO:0030984;kininogen binding;0.0200050023875031!GO:0004213;cathepsin B activity;0.0200050023875031!GO:0003729;mRNA binding;0.0201560489829032!GO:0016481;negative regulation of transcription;0.0205250057132211!GO:0022402;cell cycle process;0.0206249628654748!GO:0046822;regulation of nucleocytoplasmic transport;0.0212859308694508!GO:0042326;negative regulation of phosphorylation;0.0214892314775436!GO:0005581;collagen;0.0214923974800267!GO:0048037;cofactor binding;0.0216537649071637!GO:0005869;dynactin complex;0.0218635455805686!GO:0006066;alcohol metabolic process;0.0225722669161583!GO:0004216;cathepsin K activity;0.0225722669161583!GO:0051716;cellular response to stimulus;0.0228438554897149!GO:0006733;oxidoreduction coenzyme metabolic process;0.0229055471060579!GO:0033559;unsaturated fatty acid metabolic process;0.0233491623723897!GO:0006636;unsaturated fatty acid biosynthetic process;0.0233491623723897!GO:0006783;heme biosynthetic process;0.0234548742568934!GO:0008180;signalosome;0.0234548742568934!GO:0045926;negative regulation of growth;0.0243390279643888!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0248912284942757!GO:0042802;identical protein binding;0.0251632009148207!GO:0030660;Golgi-associated vesicle membrane;0.0252629286544226!GO:0016272;prefoldin complex;0.0266542072001655!GO:0050790;regulation of catalytic activity;0.0267589256895015!GO:0030659;cytoplasmic vesicle membrane;0.0269261203695465!GO:0051087;chaperone binding;0.0271438871326237!GO:0008139;nuclear localization sequence binding;0.0271989461794101!GO:0044420;extracellular matrix part;0.0274936566409873!GO:0003711;transcription elongation regulator activity;0.0275999132489641!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0277241135259792!GO:0043022;ribosome binding;0.0284513338232964!GO:0008147;structural constituent of bone;0.0295201991062167!GO:0033673;negative regulation of kinase activity;0.029642423239244!GO:0006469;negative regulation of protein kinase activity;0.029642423239244!GO:0015631;tubulin binding;0.0300204929770226!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0304975915342056!GO:0030131;clathrin adaptor complex;0.0309965283188099!GO:0006897;endocytosis;0.0310143117491139!GO:0010324;membrane invagination;0.0310143117491139!GO:0000030;mannosyltransferase activity;0.0316069586400421!GO:0019318;hexose metabolic process;0.0327287896241708!GO:0005862;muscle thin filament tropomyosin;0.0334459463441234!GO:0031529;ruffle organization and biogenesis;0.0336985784977422!GO:0004177;aminopeptidase activity;0.0336985784977422!GO:0006497;protein amino acid lipidation;0.0338891569187354!GO:0051348;negative regulation of transferase activity;0.034911140955246!GO:0032981;mitochondrial respiratory chain complex I assembly;0.035048047778433!GO:0010257;NADH dehydrogenase complex assembly;0.035048047778433!GO:0033108;mitochondrial respiratory chain complex assembly;0.035048047778433!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0351532409120626!GO:0008652;amino acid biosynthetic process;0.0353337915643405!GO:0005996;monosaccharide metabolic process;0.0356196783424998!GO:0004192;cathepsin D activity;0.0357888750249236!GO:0006914;autophagy;0.0369433963882593!GO:0006402;mRNA catabolic process;0.0369433963882593!GO:0016197;endosome transport;0.0371399728411951!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0374201203353269!GO:0030149;sphingolipid catabolic process;0.0374490434141325!GO:0051276;chromosome organization and biogenesis;0.0390710692101313!GO:0030031;cell projection biogenesis;0.0400371748732485!GO:0051329;interphase of mitotic cell cycle;0.0404622978338449!GO:0001666;response to hypoxia;0.0404810247070521!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0410152307612111!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0414457532705022!GO:0031543;peptidyl-proline dioxygenase activity;0.0414457532705022!GO:0048500;signal recognition particle;0.0418335144163311!GO:0044438;microbody part;0.0421077332111076!GO:0044439;peroxisomal part;0.0421077332111076!GO:0006518;peptide metabolic process;0.0422166029185619!GO:0016051;carbohydrate biosynthetic process;0.0425569208276703!GO:0030199;collagen fibril organization;0.0425569208276703!GO:0030508;thiol-disulfide exchange intermediate activity;0.0426654439891475!GO:0003756;protein disulfide isomerase activity;0.0429017881618267!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0429017881618267!GO:0008154;actin polymerization and/or depolymerization;0.0430654815632232!GO:0008186;RNA-dependent ATPase activity;0.0433673038871045!GO:0004860;protein kinase inhibitor activity;0.0438129297259706!GO:0050178;phenylpyruvate tautomerase activity;0.0440712563789487!GO:0005832;chaperonin-containing T-complex;0.0447393954489645!GO:0006644;phospholipid metabolic process;0.0447837494715708!GO:0015036;disulfide oxidoreductase activity;0.0450338854650806!GO:0004228;gelatinase A activity;0.0450338854650806!GO:0001955;blood vessel maturation;0.0450338854650806!GO:0006739;NADP metabolic process;0.0450438555227592!GO:0051168;nuclear export;0.0452837322894011!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.046030459965978!GO:0008320;protein transmembrane transporter activity;0.0467669999214048!GO:0006767;water-soluble vitamin metabolic process;0.0480548576469962!GO:0000209;protein polyubiquitination;0.048595711033611
|sample_id=11353
|sample_id=11353
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=bone
|sample_tissue=bone
|top_motifs=HMX1:2.43070393594;HES1:2.33984793782;ESR1:2.24930805124;EBF1:2.21618058476;TFAP4:1.80261387097;IKZF1:1.7552770145;ZNF423:1.71622591384;ZNF238:1.62390767104;bHLH_family:1.60814480064;TAL1_TCF{3,4,12}:1.58783250067;GLI1..3:1.53978025972;MAFB:1.4018876556;NFE2L1:1.38423428978;PAX1,9:1.27731631716;HOX{A5,B5}:1.17502028672;RXRA_VDR{dimer}:1.13750542782;UFEwm:1.10116956282;ESRRA:1.08371594449;NR5A1,2:1.05382749305;TP53:1.03786982715;GCM1,2:1.03763206354;SMAD1..7,9:1.00822898858;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.982174949912;ZBTB6:0.953856538595;ZIC1..3:0.854001024498;TFAP2{A,C}:0.822368410104;LHX3,4:0.820234452066;ATF6:0.794927379196;HOX{A6,A7,B6,B7}:0.761770099244;GTF2A1,2:0.724955846935;MTF1:0.700629198044;PPARG:0.685076442215;TFAP2B:0.666461796881;TEAD1:0.643722393575;GZF1:0.640888570825;SREBF1,2:0.61340982823;ZNF148:0.604908546628;ALX4:0.594890281084;TFCP2:0.587933548012;NANOG{mouse}:0.517424104279;RREB1:0.504577484825;NR6A1:0.503919229128;GFI1B:0.502203180359;ARID5B:0.494468799554;TLX1..3_NFIC{dimer}:0.477499468754;PAX5:0.451714519776;REST:0.40096154599;SPZ1:0.396431831346;MYFfamily:0.386348698095;NHLH1,2:0.358050387329;EVI1:0.32840468407;NFIX:0.322543786684;NR3C1:0.316203291864;SRF:0.315099854008;GTF2I:0.271994768869;XBP1:0.267862712802;HLF:0.267008869731;FOXL1:0.253734431244;HIC1:0.2393430271;NKX2-2,8:0.229489443728;KLF4:0.211298224085;HNF4A_NR2F1,2:0.19336266789;HAND1,2:0.185188616918;NR1H4:0.174868582019;STAT2,4,6:0.166497779124;NFE2L2:0.150852281169;TBX4,5:0.140735322087;NFATC1..3:0.127354063033;NFIL3:0.110073334389;MYB:0.089304270153;HNF1A:0.0786062914854;PATZ1:0.0648142349428;MED-1{core}:0.0508141243057;ONECUT1,2:0.0469606910612;MYOD1:0.024465736548;RXR{A,B,G}:0.0101988053889;RUNX1..3:-0.0137124891712;CEBPA,B_DDIT3:-0.0472541752058;LEF1_TCF7_TCF7L1,2:-0.0758662820105;YY1:-0.0778401168923;FOX{D1,D2}:-0.0939009651369;TBP:-0.123746388937;XCPE1{core}:-0.128316832392;ZEB1:-0.137469217408;MAZ:-0.157007353229;JUN:-0.165858626735;RFX1:-0.174422689732;MTE{core}:-0.178416091117;BACH2:-0.183323662422;SNAI1..3:-0.18915718727;FOS_FOS{B,L1}_JUN{B,D}:-0.199805315943;MZF1:-0.204343079431;FOXO1,3,4:-0.219708171512;PRRX1,2:-0.222664238694;FOSL2:-0.242168472279;EN1,2:-0.250350071427;STAT5{A,B}:-0.267631916882;TLX2:-0.287965608227;POU6F1:-0.310141095746;AIRE:-0.320965227629;NFKB1_REL_RELA:-0.327154866438;FOXA2:-0.346975043543;PRDM1:-0.364419462193;CDC5L:-0.373353328533;MEF2{A,B,C,D}:-0.375381770598;ATF4:-0.444892823996;GATA4:-0.445900393898;NKX2-3_NKX2-5:-0.461460942108;SOX17:-0.469458350204;GATA6:-0.47951440731;FOXM1:-0.479598948433;LMO2:-0.480963043446;DBP:-0.484927619313;PBX1:-0.486365993922;ADNP_IRX_SIX_ZHX:-0.49782351508;NKX3-2:-0.529718575669;MYBL2:-0.532366351993;PAX6:-0.542920037641;TOPORS:-0.570841927679;HOX{A4,D4}:-0.577029932865;SPIB:-0.594125969949;SP1:-0.611714957176;FOX{F1,F2,J1}:-0.612542746606;BPTF:-0.626487302653;RFX2..5_RFXANK_RFXAP:-0.647867475089;ETS1,2:-0.650025572286;HMGA1,2:-0.663885666753;TGIF1:-0.667994327657;GFI1:-0.668775196545;FOXQ1:-0.673152861321;EGR1..3:-0.676160455759;PAX4:-0.707369990354;IRF1,2:-0.711780190788;EP300:-0.72280099016;ZNF143:-0.744323555635;ZFP161:-0.752375771951;NFE2:-0.763821803246;CRX:-0.765594058276;FOXP3:-0.775209033346;POU3F1..4:-0.793903485142;NKX3-1:-0.794196395076;SPI1:-0.806777324839;DMAP1_NCOR{1,2}_SMARC:-0.8070752884;CDX1,2,4:-0.813005796545;FOX{I1,J2}:-0.815459219808;RORA:-0.829553276121;PAX3,7:-0.871448592484;T:-0.887428021299;POU2F1..3:-0.891198658668;ZNF384:-0.898484314132;PAX8:-0.91791106089;NANOG:-0.929080059287;IRF7:-0.931931562069;SOX5:-0.937903645561;SOX{8,9,10}:-0.976062885127;TFDP1:-1.01262676446;NKX6-1,2:-1.01746215576;HIF1A:-1.04406745767;CUX2:-1.04644672148;HOXA9_MEIS1:-1.05301923481;ELK1,4_GABP{A,B1}:-1.06401364163;AR:-1.06751817571;PITX1..3:-1.07088366997;ATF2:-1.07094157878;TEF:-1.08931985442;HSF1,2:-1.09333772353;RBPJ:-1.1588025527;OCT4_SOX2{dimer}:-1.17105129142;STAT1,3:-1.18310003923;SOX2:-1.20657893006;HBP1_HMGB_SSRP1_UBTF:-1.21222726696;NRF1:-1.21920259056;ATF5_CREB3:-1.26176820691;PAX2:-1.27568047974;CREB1:-1.28166500594;BREu{core}:-1.34098819947;NKX2-1,4:-1.36744176189;E2F1..5:-1.45296017525;ZBTB16:-1.46660013899;AHR_ARNT_ARNT2:-1.48041568125;VSX1,2:-1.50143583503;PDX1:-1.50893190087;NFY{A,B,C}:-1.54132825763;ALX1:-1.6017748677;FOXP1:-1.64637924525;POU5F1:-1.64828600646;ELF1,2,4:-1.65772190666;FOXN1:-1.70755989577;IKZF2:-1.80419820594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.37923802558;POU1F1:-2.40463642062;FOXD3:-2.5066863879
|top_motifs=HMX1:2.43070393594;HES1:2.33984793782;ESR1:2.24930805124;EBF1:2.21618058476;TFAP4:1.80261387097;IKZF1:1.7552770145;ZNF423:1.71622591384;ZNF238:1.62390767104;bHLH_family:1.60814480064;TAL1_TCF{3,4,12}:1.58783250067;GLI1..3:1.53978025972;MAFB:1.4018876556;NFE2L1:1.38423428978;PAX1,9:1.27731631716;HOX{A5,B5}:1.17502028672;RXRA_VDR{dimer}:1.13750542782;UFEwm:1.10116956282;ESRRA:1.08371594449;NR5A1,2:1.05382749305;TP53:1.03786982715;GCM1,2:1.03763206354;SMAD1..7,9:1.00822898858;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.982174949912;ZBTB6:0.953856538595;ZIC1..3:0.854001024498;TFAP2{A,C}:0.822368410104;LHX3,4:0.820234452066;ATF6:0.794927379196;HOX{A6,A7,B6,B7}:0.761770099244;GTF2A1,2:0.724955846935;MTF1:0.700629198044;PPARG:0.685076442215;TFAP2B:0.666461796881;TEAD1:0.643722393575;GZF1:0.640888570825;SREBF1,2:0.61340982823;ZNF148:0.604908546628;ALX4:0.594890281084;TFCP2:0.587933548012;NANOG{mouse}:0.517424104279;RREB1:0.504577484825;NR6A1:0.503919229128;GFI1B:0.502203180359;ARID5B:0.494468799554;TLX1..3_NFIC{dimer}:0.477499468754;PAX5:0.451714519776;REST:0.40096154599;SPZ1:0.396431831346;MYFfamily:0.386348698095;NHLH1,2:0.358050387329;EVI1:0.32840468407;NFIX:0.322543786684;NR3C1:0.316203291864;SRF:0.315099854008;GTF2I:0.271994768869;XBP1:0.267862712802;HLF:0.267008869731;FOXL1:0.253734431244;HIC1:0.2393430271;NKX2-2,8:0.229489443728;KLF4:0.211298224085;HNF4A_NR2F1,2:0.19336266789;HAND1,2:0.185188616918;NR1H4:0.174868582019;STAT2,4,6:0.166497779124;NFE2L2:0.150852281169;TBX4,5:0.140735322087;NFATC1..3:0.127354063033;NFIL3:0.110073334389;MYB:0.089304270153;HNF1A:0.0786062914854;PATZ1:0.0648142349428;MED-1{core}:0.0508141243057;ONECUT1,2:0.0469606910612;MYOD1:0.024465736548;RXR{A,B,G}:0.0101988053889;RUNX1..3:-0.0137124891712;CEBPA,B_DDIT3:-0.0472541752058;LEF1_TCF7_TCF7L1,2:-0.0758662820105;YY1:-0.0778401168923;FOX{D1,D2}:-0.0939009651369;TBP:-0.123746388937;XCPE1{core}:-0.128316832392;ZEB1:-0.137469217408;MAZ:-0.157007353229;JUN:-0.165858626735;RFX1:-0.174422689732;MTE{core}:-0.178416091117;BACH2:-0.183323662422;SNAI1..3:-0.18915718727;FOS_FOS{B,L1}_JUN{B,D}:-0.199805315943;MZF1:-0.204343079431;FOXO1,3,4:-0.219708171512;PRRX1,2:-0.222664238694;FOSL2:-0.242168472279;EN1,2:-0.250350071427;STAT5{A,B}:-0.267631916882;TLX2:-0.287965608227;POU6F1:-0.310141095746;AIRE:-0.320965227629;NFKB1_REL_RELA:-0.327154866438;FOXA2:-0.346975043543;PRDM1:-0.364419462193;CDC5L:-0.373353328533;MEF2{A,B,C,D}:-0.375381770598;ATF4:-0.444892823996;GATA4:-0.445900393898;NKX2-3_NKX2-5:-0.461460942108;SOX17:-0.469458350204;GATA6:-0.47951440731;FOXM1:-0.479598948433;LMO2:-0.480963043446;DBP:-0.484927619313;PBX1:-0.486365993922;ADNP_IRX_SIX_ZHX:-0.49782351508;NKX3-2:-0.529718575669;MYBL2:-0.532366351993;PAX6:-0.542920037641;TOPORS:-0.570841927679;HOX{A4,D4}:-0.577029932865;SPIB:-0.594125969949;SP1:-0.611714957176;FOX{F1,F2,J1}:-0.612542746606;BPTF:-0.626487302653;RFX2..5_RFXANK_RFXAP:-0.647867475089;ETS1,2:-0.650025572286;HMGA1,2:-0.663885666753;TGIF1:-0.667994327657;GFI1:-0.668775196545;FOXQ1:-0.673152861321;EGR1..3:-0.676160455759;PAX4:-0.707369990354;IRF1,2:-0.711780190788;EP300:-0.72280099016;ZNF143:-0.744323555635;ZFP161:-0.752375771951;NFE2:-0.763821803246;CRX:-0.765594058276;FOXP3:-0.775209033346;POU3F1..4:-0.793903485142;NKX3-1:-0.794196395076;SPI1:-0.806777324839;DMAP1_NCOR{1,2}_SMARC:-0.8070752884;CDX1,2,4:-0.813005796545;FOX{I1,J2}:-0.815459219808;RORA:-0.829553276121;PAX3,7:-0.871448592484;T:-0.887428021299;POU2F1..3:-0.891198658668;ZNF384:-0.898484314132;PAX8:-0.91791106089;NANOG:-0.929080059287;IRF7:-0.931931562069;SOX5:-0.937903645561;SOX{8,9,10}:-0.976062885127;TFDP1:-1.01262676446;NKX6-1,2:-1.01746215576;HIF1A:-1.04406745767;CUX2:-1.04644672148;HOXA9_MEIS1:-1.05301923481;ELK1,4_GABP{A,B1}:-1.06401364163;AR:-1.06751817571;PITX1..3:-1.07088366997;ATF2:-1.07094157878;TEF:-1.08931985442;HSF1,2:-1.09333772353;RBPJ:-1.1588025527;OCT4_SOX2{dimer}:-1.17105129142;STAT1,3:-1.18310003923;SOX2:-1.20657893006;HBP1_HMGB_SSRP1_UBTF:-1.21222726696;NRF1:-1.21920259056;ATF5_CREB3:-1.26176820691;PAX2:-1.27568047974;CREB1:-1.28166500594;BREu{core}:-1.34098819947;NKX2-1,4:-1.36744176189;E2F1..5:-1.45296017525;ZBTB16:-1.46660013899;AHR_ARNT_ARNT2:-1.48041568125;VSX1,2:-1.50143583503;PDX1:-1.50893190087;NFY{A,B,C}:-1.54132825763;ALX1:-1.6017748677;FOXP1:-1.64637924525;POU5F1:-1.64828600646;ELF1,2,4:-1.65772190666;FOXN1:-1.70755989577;IKZF2:-1.80419820594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.37923802558;POU1F1:-2.40463642062;FOXD3:-2.5066863879
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11353-117H3;search_select_hide=table117:FF:11353-117H3
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Osteoblast - differentiated, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11980
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stage22 weeks old fetus
sexmale
ageembryo 22week
cell typeosteocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1424
catalog numberCA406D-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005579
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11980 CAGE DRX008390 DRR009262
Accession ID Hg19

Library idBAMCTSS
CNhs11980 DRZ000687 DRZ002072
Accession ID Hg38

Library idBAMCTSS
CNhs11980 DRZ012037 DRZ013422
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005579
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.CGTACG sRNA-Seq DRX037030 DRR041396
Accession ID Hg19

Library idBAMCTSS
SRhi10003.CGTACG DRZ007038


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.207
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.569
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.303
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.364
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.515
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.701
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.587
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.893
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.6
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.092
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.515
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.744
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11980

Jaspar motifP-value
MA0002.20.0116
MA0003.10.0987
MA0004.10.593
MA0006.10.261
MA0007.10.29
MA0009.10.574
MA0014.10.65
MA0017.10.182
MA0018.24.20683e-4
MA0019.10.834
MA0024.16.91195e-4
MA0025.10.0708
MA0027.10.349
MA0028.10.0359
MA0029.10.2
MA0030.10.682
MA0031.10.387
MA0035.20.91
MA0038.10.0159
MA0039.20.119
MA0040.10.627
MA0041.10.325
MA0042.10.549
MA0043.11.01807e-4
MA0046.10.212
MA0047.20.853
MA0048.10.938
MA0050.11.75586e-5
MA0051.10.0138
MA0052.10.962
MA0055.10.921
MA0057.10.196
MA0058.10.455
MA0059.10.229
MA0060.12.46798e-5
MA0061.10.594
MA0062.29.3307e-6
MA0065.20.0169
MA0066.10.0592
MA0067.10.0761
MA0068.10.166
MA0069.10.377
MA0070.10.503
MA0071.10.166
MA0072.10.967
MA0073.10.797
MA0074.10.186
MA0076.10.00204
MA0077.10.695
MA0078.10.365
MA0079.20.81
MA0080.24.17264e-6
MA0081.10.036
MA0083.10.0675
MA0084.10.973
MA0087.10.775
MA0088.10.737
MA0090.10.0861
MA0091.10.0262
MA0092.10.134
MA0093.10.683
MA0099.20.517
MA0100.10.3
MA0101.10.204
MA0102.20.042
MA0103.10.114
MA0104.20.931
MA0105.10.235
MA0106.10.0406
MA0107.10.332
MA0108.20.904
MA0111.10.924
MA0112.28.94411e-5
MA0113.10.138
MA0114.10.173
MA0115.10.0473
MA0116.10.126
MA0117.10.617
MA0119.10.146
MA0122.10.506
MA0124.10.0238
MA0125.10.601
MA0131.10.109
MA0135.10.706
MA0136.14.21875e-9
MA0137.20.498
MA0138.20.0962
MA0139.10.164
MA0140.10.586
MA0141.10.0275
MA0142.10.787
MA0143.10.772
MA0144.10.54
MA0145.10.217
MA0146.10.112
MA0147.10.94
MA0148.10.487
MA0149.10.273
MA0150.10.292
MA0152.10.788
MA0153.10.0535
MA0154.10.138
MA0155.10.0432
MA0156.17.59268e-6
MA0157.10.924
MA0159.10.252
MA0160.10.364
MA0162.10.0718
MA0163.10.00102
MA0164.10.165
MA0258.10.00349
MA0259.10.342



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11980

Novel motifP-value
10.666
100.871
1000.917
1010.908
1020.722
1030.226
1040.138
1050.576
1060.0298
1070.0368
1080.229
1090.0851
110.0375
1100.287
1110.595
1120.402
1130.267
1140.207
1150.0161
1160.105
1170.729
1180.821
1190.194
120.632
1200.217
1210.543
1220.479
1230.363
1240.91
1250.945
1260.81
1270.21
1280.0348
1290.683
130.791
1300.576
1310.856
1320.396
1330.963
1340.169
1350.175
1360.761
1370.418
1380.957
1390.0997
140.845
1400.158
1410.527
1420.0536
1430.0754
1440.78
1450.186
1460.239
1470.46
1480.442
1490.00917
150.204
1500.345
1510.296
1520.0679
1530.87
1540.59
1550.425
1560.728
1570.171
1580.189
1590.654
160.0703
1600.133
1610.568
1620.0443
1630.0877
1640.448
1650.611
1660.121
1670.606
1680.718
1690.0367
170.178
180.0392
190.06
20.289
200.509
210.764
220.0891
230.187
240.792
250.573
260.299
270.205
280.613
290.415
30.341
300.425
310.367
321.75673e-7
330.757
340.535
350.333
360.858
370.145
380.409
390.257
40.703
400.286
410.926
420.781
430.16
440.213
450.256
460.13
470.323
480.188
490.17
50.61
500.519
510.266
520.323
530.771
540.326
550.0662
560.372
570.393
580.966
590.013
60.956
600.392
610.603
620.759
630.0748
640.153
650.0684
660.709
670.363
680.329
690.0811
70.853
700.0301
710.43
720.559
730.0438
740.729
750.377
760.753
770.0131
780.52
790.00129
80.0488
800.926
810.213
820.123
830.551
840.224
850.0785
860.444
870.226
880.601
890.0229
90.438
900.354
910.357
920.104
930.54
940.527
950.452
960.494
970.248
980.0631
990.021



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11980


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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