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{{f5samples
{{f5samples
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|accession_numbers=CAGE;DRX008178;DRR009050;DRZ000475;DRZ001860;DRZ011825;DRZ013210
|accession_numbers_RNASeq=sRNA-Seq;DRX037159;DRR041525;DRZ007167
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|comment=
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|def=
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Line 35: Line 44:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11382-118B5
|id=FF:11382-118B5
|is_a=EFO:0002091;;FF:0000002;;FF:0000031;;FF:0000210
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|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTGAAA.11382
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11382
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|name=CD4+ T Cells, donor3
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Line 42: Line 65:
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|rna_box=118
|rna_box=118
|rna_catalog_number=3H100-23-10
|rna_catalog_number=3H100-23-10
Line 56: Line 82:
|rna_tube_id=118B5
|rna_tube_id=118B5
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.GTGAAA
|sample_age=26
|sample_age=26
|sample_category=primary cells
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.55463447808819e-225!GO:0043227;membrane-bound organelle;2.18387537868268e-196!GO:0043231;intracellular membrane-bound organelle;5.76537040102119e-196!GO:0043226;organelle;4.07641200723718e-186!GO:0043229;intracellular organelle;2.49967733547768e-185!GO:0005737;cytoplasm;3.64225163660695e-127!GO:0005634;nucleus;1.05881987431961e-115!GO:0044422;organelle part;4.0324250390666e-109!GO:0044446;intracellular organelle part;1.80358501259751e-107!GO:0043170;macromolecule metabolic process;2.48803054438437e-104!GO:0044237;cellular metabolic process;2.60883912686204e-99!GO:0044238;primary metabolic process;7.32211382880163e-97!GO:0032991;macromolecular complex;1.54239323539807e-83!GO:0043283;biopolymer metabolic process;1.2179558418918e-80!GO:0044428;nuclear part;9.18179970553774e-79!GO:0044444;cytoplasmic part;1.95299202081367e-78!GO:0003723;RNA binding;6.47066657139291e-74!GO:0030529;ribonucleoprotein complex;1.96376348764641e-70!GO:0005515;protein binding;3.24249602063426e-67!GO:0010467;gene expression;2.76929743491694e-65!GO:0043233;organelle lumen;4.26407546255079e-63!GO:0031974;membrane-enclosed lumen;4.26407546255079e-63!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.33699220316684e-61!GO:0031981;nuclear lumen;2.91163811425259e-50!GO:0006396;RNA processing;5.64998420069858e-49!GO:0019538;protein metabolic process;4.61391451979575e-48!GO:0044267;cellular protein metabolic process;2.73511411320515e-46!GO:0044260;cellular macromolecule metabolic process;1.80783882472822e-45!GO:0003676;nucleic acid binding;5.50064951738957e-45!GO:0016071;mRNA metabolic process;1.92704066921156e-44!GO:0033036;macromolecule localization;1.96333868909083e-44!GO:0015031;protein transport;1.98132908648571e-43!GO:0006412;translation;7.04958231562638e-43!GO:0043234;protein complex;3.89731221265245e-42!GO:0045184;establishment of protein localization;2.45273390600484e-41!GO:0008104;protein localization;1.58303360072818e-40!GO:0016070;RNA metabolic process;2.99126621548036e-40!GO:0005739;mitochondrion;7.48839482495712e-39!GO:0008380;RNA splicing;1.30033372746501e-37!GO:0006397;mRNA processing;8.43113808355151e-37!GO:0005840;ribosome;3.21285520375056e-35!GO:0031090;organelle membrane;6.2433614055063e-34!GO:0046907;intracellular transport;1.41448388632428e-33!GO:0006259;DNA metabolic process;8.53688697277739e-33!GO:0016043;cellular component organization and biogenesis;9.44188654529486e-33!GO:0031967;organelle envelope;2.13886939589395e-32!GO:0031975;envelope;4.57749240210227e-32!GO:0005654;nucleoplasm;4.75793052410127e-32!GO:0009059;macromolecule biosynthetic process;8.65658420677293e-32!GO:0003735;structural constituent of ribosome;1.78213357811963e-30!GO:0006886;intracellular protein transport;2.52502900621992e-30!GO:0000166;nucleotide binding;2.03991143093502e-29!GO:0005829;cytosol;4.02128269987426e-29!GO:0044429;mitochondrial part;8.65466797191626e-29!GO:0033279;ribosomal subunit;2.31544269534478e-28!GO:0005681;spliceosome;3.56278551314934e-28!GO:0065003;macromolecular complex assembly;3.8691887703757e-28!GO:0006512;ubiquitin cycle;1.77625190449676e-27!GO:0006996;organelle organization and biogenesis;2.049772897193e-26!GO:0044451;nucleoplasm part;7.22219574889927e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.72298197090089e-25!GO:0022607;cellular component assembly;1.94584824351988e-25!GO:0051641;cellular localization;1.21029778613074e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.35088394801703e-24!GO:0051649;establishment of cellular localization;2.59581636888128e-24!GO:0043412;biopolymer modification;2.66856468463706e-24!GO:0009058;biosynthetic process;1.37573740127112e-23!GO:0044249;cellular biosynthetic process;2.38064566313734e-23!GO:0012501;programmed cell death;2.72778966169598e-23!GO:0006915;apoptosis;3.71276026691353e-23!GO:0044445;cytosolic part;1.09209523066394e-22!GO:0008219;cell death;2.53614307003967e-22!GO:0016265;death;2.53614307003967e-22!GO:0050794;regulation of cellular process;4.7873275476159e-22!GO:0008134;transcription factor binding;7.8271712900943e-22!GO:0006464;protein modification process;1.0509399918732e-21!GO:0032553;ribonucleotide binding;1.90172185572696e-21!GO:0032555;purine ribonucleotide binding;1.90172185572696e-21!GO:0043687;post-translational protein modification;6.10235256668088e-21!GO:0016874;ligase activity;1.3269488453281e-20!GO:0017076;purine nucleotide binding;3.82172028552256e-20!GO:0019941;modification-dependent protein catabolic process;8.43045244850336e-20!GO:0043632;modification-dependent macromolecule catabolic process;8.43045244850336e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;9.32704021750837e-20!GO:0044265;cellular macromolecule catabolic process;1.02294275212472e-19!GO:0005740;mitochondrial envelope;1.32848446807769e-19!GO:0006511;ubiquitin-dependent protein catabolic process;1.39106541838455e-19!GO:0044257;cellular protein catabolic process;2.74555016996218e-19!GO:0031966;mitochondrial membrane;3.73141200265685e-19!GO:0017111;nucleoside-triphosphatase activity;7.16318551085002e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.67280983268613e-19!GO:0016462;pyrophosphatase activity;8.74322037745398e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13689514636025e-18!GO:0043228;non-membrane-bound organelle;1.31481724454025e-18!GO:0043232;intracellular non-membrane-bound organelle;1.31481724454025e-18!GO:0007049;cell cycle;2.33985853268542e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;3.85027053212454e-18!GO:0019866;organelle inner membrane;4.03394477505802e-18!GO:0005730;nucleolus;4.15044338684179e-18!GO:0006605;protein targeting;5.55111942574112e-18!GO:0019222;regulation of metabolic process;8.77379623369405e-18!GO:0006913;nucleocytoplasmic transport;1.4366192534138e-17!GO:0051276;chromosome organization and biogenesis;1.69549388013018e-17!GO:0005524;ATP binding;1.73325099101179e-17!GO:0043285;biopolymer catabolic process;1.98803757875901e-17!GO:0006323;DNA packaging;2.68532159643581e-17!GO:0051169;nuclear transport;2.97338267088288e-17!GO:0032559;adenyl ribonucleotide binding;5.21300575916877e-17!GO:0022618;protein-RNA complex assembly;7.90528827638885e-17!GO:0016604;nuclear body;1.5076601107373e-16!GO:0050789;regulation of biological process;3.64605830870607e-16!GO:0006974;response to DNA damage stimulus;6.96689048354867e-16!GO:0042981;regulation of apoptosis;8.96609160344108e-16!GO:0005743;mitochondrial inner membrane;9.35415304472117e-16!GO:0030554;adenyl nucleotide binding;1.26027584384099e-15!GO:0043067;regulation of programmed cell death;1.38383810823665e-15!GO:0006119;oxidative phosphorylation;1.81920957198288e-15!GO:0015934;large ribosomal subunit;3.58840149090986e-15!GO:0031323;regulation of cellular metabolic process;6.11806711864947e-15!GO:0009057;macromolecule catabolic process;7.44762731153577e-15!GO:0008135;translation factor activity, nucleic acid binding;1.05861146228103e-14!GO:0016607;nuclear speck;1.19118067959356e-14!GO:0015935;small ribosomal subunit;3.00546144682089e-14!GO:0006350;transcription;3.21821135564852e-14!GO:0030163;protein catabolic process;4.54116412971347e-14!GO:0044455;mitochondrial membrane part;7.85717603876888e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.1174862742797e-13!GO:0003712;transcription cofactor activity;1.23614459854003e-13!GO:0005635;nuclear envelope;1.28210848068416e-13!GO:0012505;endomembrane system;1.28210848068416e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.71757659796942e-13!GO:0000375;RNA splicing, via transesterification reactions;1.71757659796942e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.71757659796942e-13!GO:0006281;DNA repair;2.9167041452287e-13!GO:0016568;chromatin modification;3.04646775576325e-13!GO:0022402;cell cycle process;3.73077550179643e-13!GO:0010468;regulation of gene expression;4.5013469346965e-13!GO:0006457;protein folding;7.28825427895561e-13!GO:0031965;nuclear membrane;7.68697444362178e-13!GO:0017038;protein import;1.38459303908515e-12!GO:0006366;transcription from RNA polymerase II promoter;1.44771013672991e-12!GO:0042623;ATPase activity, coupled;1.84644653319936e-12!GO:0016887;ATPase activity;2.08569132235094e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.24632187696774e-12!GO:0051726;regulation of cell cycle;2.65024637214626e-12!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.05084092743938e-12!GO:0006793;phosphorus metabolic process;3.05084092743938e-12!GO:0006796;phosphate metabolic process;3.05084092743938e-12!GO:0048523;negative regulation of cellular process;3.06607012791683e-12!GO:0008639;small protein conjugating enzyme activity;3.72719972721484e-12!GO:0000074;regulation of progression through cell cycle;4.69518981247122e-12!GO:0004842;ubiquitin-protein ligase activity;4.8865112896095e-12!GO:0000502;proteasome complex (sensu Eukaryota);6.11527075165033e-12!GO:0044453;nuclear membrane part;6.68002958225533e-12!GO:0004386;helicase activity;6.99117562381278e-12!GO:0005694;chromosome;9.48696318080008e-12!GO:0019787;small conjugating protein ligase activity;1.32349584644345e-11!GO:0065004;protein-DNA complex assembly;1.41223298911289e-11!GO:0007243;protein kinase cascade;1.85348399340949e-11!GO:0031980;mitochondrial lumen;1.91429137373846e-11!GO:0005759;mitochondrial matrix;1.91429137373846e-11!GO:0032774;RNA biosynthetic process;2.08550605588845e-11!GO:0044248;cellular catabolic process;2.14185081804509e-11!GO:0006351;transcription, DNA-dependent;2.25657848506592e-11!GO:0006333;chromatin assembly or disassembly;2.72541517114544e-11!GO:0048770;pigment granule;3.11195246056649e-11!GO:0042470;melanosome;3.11195246056649e-11!GO:0005746;mitochondrial respiratory chain;3.54095380500334e-11!GO:0065007;biological regulation;3.80494057409644e-11!GO:0045449;regulation of transcription;1.00427500685607e-10!GO:0006446;regulation of translational initiation;1.31483666857886e-10!GO:0048519;negative regulation of biological process;1.44207790203865e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.496296292054e-10!GO:0003743;translation initiation factor activity;2.07965733375191e-10!GO:0006413;translational initiation;2.17228706020258e-10!GO:0005643;nuclear pore;2.39696319957798e-10!GO:0016310;phosphorylation;2.63739359126321e-10!GO:0051082;unfolded protein binding;4.19522285941163e-10!GO:0050657;nucleic acid transport;4.19522285941163e-10!GO:0051236;establishment of RNA localization;4.19522285941163e-10!GO:0050658;RNA transport;4.19522285941163e-10!GO:0050136;NADH dehydrogenase (quinone) activity;4.24338853376938e-10!GO:0003954;NADH dehydrogenase activity;4.24338853376938e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.24338853376938e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.45495891690079e-10!GO:0008026;ATP-dependent helicase activity;4.53823008290746e-10!GO:0006403;RNA localization;4.55804945814165e-10!GO:0051170;nuclear import;4.86307737252213e-10!GO:0008270;zinc ion binding;5.10370541546537e-10!GO:0006606;protein import into nucleus;5.8100982958529e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.99960197953674e-10!GO:0048193;Golgi vesicle transport;6.2399109217176e-10!GO:0044427;chromosomal part;7.40889674112807e-10!GO:0009719;response to endogenous stimulus;1.10278633340577e-09!GO:0016881;acid-amino acid ligase activity;1.35903698229924e-09!GO:0003713;transcription coactivator activity;1.42474933011078e-09!GO:0005794;Golgi apparatus;1.4534257512983e-09!GO:0065009;regulation of a molecular function;1.89096570433577e-09!GO:0016563;transcription activator activity;2.06490702250196e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.45382107698354e-09!GO:0006355;regulation of transcription, DNA-dependent;2.55253519784874e-09!GO:0007242;intracellular signaling cascade;2.64155161252975e-09!GO:0016564;transcription repressor activity;3.2691951829856e-09!GO:0031324;negative regulation of cellular metabolic process;3.29360511730726e-09!GO:0042254;ribosome biogenesis and assembly;5.72613259476361e-09!GO:0042775;organelle ATP synthesis coupled electron transport;5.77559856067627e-09!GO:0042773;ATP synthesis coupled electron transport;5.77559856067627e-09!GO:0045786;negative regulation of progression through cell cycle;9.5039733761599e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.58663165749664e-09!GO:0000785;chromatin;9.74306169344759e-09!GO:0005768;endosome;1.07063004753097e-08!GO:0051246;regulation of protein metabolic process;1.12854106899581e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.34031574406541e-08!GO:0043566;structure-specific DNA binding;1.35263101134551e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.37560284499219e-08!GO:0045271;respiratory chain complex I;1.37560284499219e-08!GO:0005747;mitochondrial respiratory chain complex I;1.37560284499219e-08!GO:0016192;vesicle-mediated transport;1.86953208657722e-08!GO:0051028;mRNA transport;1.93352105623259e-08!GO:0006916;anti-apoptosis;1.96012584253256e-08!GO:0032446;protein modification by small protein conjugation;2.19788668825908e-08!GO:0046930;pore complex;2.36429990527637e-08!GO:0043069;negative regulation of programmed cell death;2.42803931566861e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.04075149144051e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.07886898776167e-08!GO:0043066;negative regulation of apoptosis;3.97418089427296e-08!GO:0003697;single-stranded DNA binding;4.47020285458899e-08!GO:0016567;protein ubiquitination;5.10567137690703e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.19573277897079e-08!GO:0019829;cation-transporting ATPase activity;5.24442452969098e-08!GO:0009892;negative regulation of metabolic process;6.52556723211662e-08!GO:0065002;intracellular protein transport across a membrane;1.09882120819505e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.2063357364901e-07!GO:0016481;negative regulation of transcription;1.44978597199224e-07!GO:0008565;protein transporter activity;1.52018261975294e-07!GO:0016740;transferase activity;2.02720391817846e-07!GO:0031497;chromatin assembly;2.08863558591544e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.2310910149175e-07!GO:0006334;nucleosome assembly;2.2310910149175e-07!GO:0000151;ubiquitin ligase complex;2.44194231938267e-07!GO:0043065;positive regulation of apoptosis;2.82424610495848e-07!GO:0051186;cofactor metabolic process;3.01621088630178e-07!GO:0003677;DNA binding;3.06699555118656e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.12278584070459e-07!GO:0019899;enzyme binding;3.40645391320617e-07!GO:0006917;induction of apoptosis;3.47010609618547e-07!GO:0000278;mitotic cell cycle;3.47010609618547e-07!GO:0044432;endoplasmic reticulum part;4.19705540123645e-07!GO:0043068;positive regulation of programmed cell death;4.31418404151022e-07!GO:0009259;ribonucleotide metabolic process;5.24703113559992e-07!GO:0012502;induction of programmed cell death;5.82560938272207e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.85747346168024e-07!GO:0006399;tRNA metabolic process;6.42245630259305e-07!GO:0009260;ribonucleotide biosynthetic process;6.82155535097539e-07!GO:0004674;protein serine/threonine kinase activity;7.74126810456847e-07!GO:0005783;endoplasmic reticulum;8.55042404702237e-07!GO:0016072;rRNA metabolic process;9.41264455392555e-07!GO:0006260;DNA replication;9.87573716306776e-07!GO:0046914;transition metal ion binding;1.08099711047426e-06!GO:0016787;hydrolase activity;1.08413488461087e-06!GO:0003724;RNA helicase activity;1.24577767197381e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.26762572857612e-06!GO:0005761;mitochondrial ribosome;1.29086416333046e-06!GO:0000313;organellar ribosome;1.29086416333046e-06!GO:0006364;rRNA processing;1.32290669651757e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.47422042769152e-06!GO:0051168;nuclear export;1.47422042769152e-06!GO:0006164;purine nucleotide biosynthetic process;1.73287292289049e-06!GO:0005525;GTP binding;2.00450904995674e-06!GO:0009150;purine ribonucleotide metabolic process;3.12367890974654e-06!GO:0006163;purine nucleotide metabolic process;3.27575796782486e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.43949759582414e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.89403761221989e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.08107239900242e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.33653113924652e-06!GO:0009060;aerobic respiration;4.35072712163538e-06!GO:0015986;ATP synthesis coupled proton transport;4.45974270985042e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.45974270985042e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.67640875002951e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.30773275394383e-06!GO:0000245;spliceosome assembly;6.03547352739709e-06!GO:0005789;endoplasmic reticulum membrane;6.78455870160569e-06!GO:0005813;centrosome;8.20264665910252e-06!GO:0006732;coenzyme metabolic process;9.39280218731979e-06!GO:0003924;GTPase activity;9.39280218731979e-06!GO:0006401;RNA catabolic process;9.39280218731979e-06!GO:0009056;catabolic process;9.88923111314261e-06!GO:0007264;small GTPase mediated signal transduction;1.00863934412907e-05!GO:0060090;molecular adaptor activity;1.10154415982779e-05!GO:0048522;positive regulation of cellular process;1.10154415982779e-05!GO:0006461;protein complex assembly;1.16893942531293e-05!GO:0005793;ER-Golgi intermediate compartment;1.21715647306132e-05!GO:0006402;mRNA catabolic process;1.29083563934404e-05!GO:0050790;regulation of catalytic activity;1.33626024674166e-05!GO:0016779;nucleotidyltransferase activity;1.34121424873339e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.38519491630255e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.38519491630255e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.38519491630255e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.38519491630255e-05!GO:0004298;threonine endopeptidase activity;1.51407797898764e-05!GO:0007005;mitochondrion organization and biogenesis;1.58030308747119e-05!GO:0016363;nuclear matrix;1.64756261998065e-05!GO:0006417;regulation of translation;1.81652893615772e-05!GO:0045259;proton-transporting ATP synthase complex;2.11413840676901e-05!GO:0008186;RNA-dependent ATPase activity;2.48205755780806e-05!GO:0006754;ATP biosynthetic process;2.49784987399103e-05!GO:0006753;nucleoside phosphate metabolic process;2.49784987399103e-05!GO:0043038;amino acid activation;2.91570397328647e-05!GO:0006418;tRNA aminoacylation for protein translation;2.91570397328647e-05!GO:0043039;tRNA aminoacylation;2.91570397328647e-05!GO:0005815;microtubule organizing center;3.00076561875709e-05!GO:0003714;transcription corepressor activity;3.56027125616558e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.81722102681524e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.81722102681524e-05!GO:0032561;guanyl ribonucleotide binding;4.1453348305144e-05!GO:0019001;guanyl nucleotide binding;4.1453348305144e-05!GO:0009966;regulation of signal transduction;4.71825966424806e-05!GO:0045333;cellular respiration;4.99514198615281e-05!GO:0030120;vesicle coat;5.08053530567701e-05!GO:0030662;coated vesicle membrane;5.08053530567701e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.37893642504237e-05!GO:0015630;microtubule cytoskeleton;5.42816387013128e-05!GO:0046034;ATP metabolic process;5.75759309124466e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.83736090311867e-05!GO:0005773;vacuole;5.87514058900612e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.87514058900612e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.87514058900612e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.88759311105071e-05!GO:0015399;primary active transmembrane transporter activity;5.88759311105071e-05!GO:0031326;regulation of cellular biosynthetic process;5.99706689457408e-05!GO:0008632;apoptotic program;6.15780068060356e-05!GO:0006613;cotranslational protein targeting to membrane;6.26200338398007e-05!GO:0030695;GTPase regulator activity;6.52795674675492e-05!GO:0048475;coated membrane;7.45470898278666e-05!GO:0030117;membrane coat;7.45470898278666e-05!GO:0009967;positive regulation of signal transduction;7.53637084971798e-05!GO:0004004;ATP-dependent RNA helicase activity;7.77009899973977e-05!GO:0042110;T cell activation;7.83107506390435e-05!GO:0045892;negative regulation of transcription, DNA-dependent;7.95690180490034e-05!GO:0009141;nucleoside triphosphate metabolic process;8.60935660273111e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.69902129226402e-05!GO:0009144;purine nucleoside triphosphate metabolic process;8.69902129226402e-05!GO:0006352;transcription initiation;9.62364363366591e-05!GO:0051427;hormone receptor binding;9.97703830965256e-05!GO:0044440;endosomal part;0.000109363154263708!GO:0010008;endosome membrane;0.000109363154263708!GO:0003729;mRNA binding;0.000115534728924623!GO:0022403;cell cycle phase;0.000116052086803222!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000121526584675495!GO:0008234;cysteine-type peptidase activity;0.000122122698645236!GO:0051188;cofactor biosynthetic process;0.000131944978560342!GO:0044431;Golgi apparatus part;0.000139120361248423!GO:0043623;cellular protein complex assembly;0.000145765600812999!GO:0008047;enzyme activator activity;0.000159095175085784!GO:0007265;Ras protein signal transduction;0.00015954735914346!GO:0006099;tricarboxylic acid cycle;0.000187715643822332!GO:0046356;acetyl-CoA catabolic process;0.000187715643822332!GO:0035257;nuclear hormone receptor binding;0.000193555040870539!GO:0016251;general RNA polymerase II transcription factor activity;0.000194540884231055!GO:0003690;double-stranded DNA binding;0.000197601610897594!GO:0009055;electron carrier activity;0.000206889395995608!GO:0000323;lytic vacuole;0.00021987889205539!GO:0005764;lysosome;0.00021987889205539!GO:0005083;small GTPase regulator activity;0.000236033255260586!GO:0005667;transcription factor complex;0.000244053428692751!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000244053428692751!GO:0005770;late endosome;0.000246183952513585!GO:0009615;response to virus;0.000247891970646131!GO:0006607;NLS-bearing substrate import into nucleus;0.000256651715844007!GO:0005769;early endosome;0.000264997748817138!GO:0007050;cell cycle arrest;0.000318831932350852!GO:0009889;regulation of biosynthetic process;0.000323337505806787!GO:0006261;DNA-dependent DNA replication;0.00033522089099896!GO:0048518;positive regulation of biological process;0.000343454152584871!GO:0016301;kinase activity;0.000349254210747683!GO:0000087;M phase of mitotic cell cycle;0.000372420479854405!GO:0043492;ATPase activity, coupled to movement of substances;0.000375755907148614!GO:0051251;positive regulation of lymphocyte activation;0.000393904240375326!GO:0048471;perinuclear region of cytoplasm;0.000393904240375326!GO:0019783;small conjugating protein-specific protease activity;0.000395024668244393!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000395724073818726!GO:0015631;tubulin binding;0.00041099412131041!GO:0030384;phosphoinositide metabolic process;0.000428856480225157!GO:0006084;acetyl-CoA metabolic process;0.00043595158572322!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000517184045582526!GO:0007067;mitosis;0.000518346605850197!GO:0005885;Arp2/3 protein complex;0.000519933651986189!GO:0005070;SH3/SH2 adaptor activity;0.000546882780736442!GO:0006612;protein targeting to membrane;0.000562611714581385!GO:0004843;ubiquitin-specific protease activity;0.000593701009565565!GO:0051090;regulation of transcription factor activity;0.000597711344442359!GO:0009108;coenzyme biosynthetic process;0.000643216282994127!GO:0042802;identical protein binding;0.000672765717593711!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000706432469946162!GO:0006650;glycerophospholipid metabolic process;0.000737368279636879!GO:0006611;protein export from nucleus;0.000777482421160781!GO:0016197;endosome transport;0.000780317380312159!GO:0046822;regulation of nucleocytoplasmic transport;0.000812597715950883!GO:0051301;cell division;0.000875420174652944!GO:0006310;DNA recombination;0.00093635047044125!GO:0008017;microtubule binding;0.000958117413876533!GO:0008654;phospholipid biosynthetic process;0.000970670658012208!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00097342421639299!GO:0022415;viral reproductive process;0.000978651168608685!GO:0051223;regulation of protein transport;0.00101955196857885!GO:0006752;group transfer coenzyme metabolic process;0.00103616464877521!GO:0009109;coenzyme catabolic process;0.00110642815945726!GO:0006338;chromatin remodeling;0.00111715493765787!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118201345915632!GO:0048468;cell development;0.00125299223351792!GO:0046649;lymphocyte activation;0.00126926898018181!GO:0006891;intra-Golgi vesicle-mediated transport;0.00130563614189551!GO:0004221;ubiquitin thiolesterase activity;0.00130563614189551!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00132653697129371!GO:0051336;regulation of hydrolase activity;0.00145660284809576!GO:0051252;regulation of RNA metabolic process;0.00145660284809576!GO:0043021;ribonucleoprotein binding;0.00147431747082332!GO:0000786;nucleosome;0.00159612133829562!GO:0045941;positive regulation of transcription;0.0016173722183511!GO:0051187;cofactor catabolic process;0.00168989850209901!GO:0019867;outer membrane;0.00181673349832881!GO:0005741;mitochondrial outer membrane;0.00181673349832881!GO:0003746;translation elongation factor activity;0.00188726909175906!GO:0005798;Golgi-associated vesicle;0.00191326861365445!GO:0030518;steroid hormone receptor signaling pathway;0.00195006282856625!GO:0005096;GTPase activator activity;0.00209611233566241!GO:0031072;heat shock protein binding;0.00211602108094827!GO:0051789;response to protein stimulus;0.00211626846538808!GO:0006986;response to unfolded protein;0.00211626846538808!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00211626846538808!GO:0000139;Golgi membrane;0.00223421271695743!GO:0031968;organelle outer membrane;0.00223421271695743!GO:0016311;dephosphorylation;0.00233397739062104!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00234526751269521!GO:0005637;nuclear inner membrane;0.00234713120694032!GO:0004722;protein serine/threonine phosphatase activity;0.00239286544436793!GO:0031625;ubiquitin protein ligase binding;0.00249718894239608!GO:0006405;RNA export from nucleus;0.00263922863218185!GO:0005048;signal sequence binding;0.00267363484855774!GO:0042101;T cell receptor complex;0.00271345233936355!GO:0008287;protein serine/threonine phosphatase complex;0.00279118528105214!GO:0008022;protein C-terminus binding;0.00280848135477453!GO:0006414;translational elongation;0.00289276604199126!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0029190602560267!GO:0003682;chromatin binding;0.00295809663581573!GO:0051059;NF-kappaB binding;0.00296969993397535!GO:0043488;regulation of mRNA stability;0.00301562034074869!GO:0043487;regulation of RNA stability;0.00301562034074869!GO:0046966;thyroid hormone receptor binding;0.00307216584122677!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00307701062187655!GO:0050870;positive regulation of T cell activation;0.0031208195787266!GO:0017091;AU-rich element binding;0.0031208195787266!GO:0050779;RNA destabilization;0.0031208195787266!GO:0000289;poly(A) tail shortening;0.0031208195787266!GO:0031252;leading edge;0.00314507075186248!GO:0006468;protein amino acid phosphorylation;0.00318751604017282!GO:0005684;U2-dependent spliceosome;0.00318751604017282!GO:0008168;methyltransferase activity;0.0032194931765042!GO:0016741;transferase activity, transferring one-carbon groups;0.00323377613023834!GO:0005774;vacuolar membrane;0.00323444334303034!GO:0051329;interphase of mitotic cell cycle;0.00350037985690873!GO:0016791;phosphoric monoester hydrolase activity;0.00350170040362947!GO:0016584;nucleosome positioning;0.00352241439154853!GO:0003899;DNA-directed RNA polymerase activity;0.00383130727253359!GO:0016585;chromatin remodeling complex;0.00390042621955867!GO:0051092;activation of NF-kappaB transcription factor;0.00394126541317664!GO:0016790;thiolester hydrolase activity;0.00395119270197195!GO:0030658;transport vesicle membrane;0.00403219614802307!GO:0045893;positive regulation of transcription, DNA-dependent;0.00412695152134798!GO:0008139;nuclear localization sequence binding;0.00414990739676004!GO:0046489;phosphoinositide biosynthetic process;0.00419140966329691!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0043002215783082!GO:0003725;double-stranded RNA binding;0.00456129770822491!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00456129770822491!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00456129770822491!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00456129770822491!GO:0033673;negative regulation of kinase activity;0.00456241273600608!GO:0006469;negative regulation of protein kinase activity;0.00456241273600608!GO:0006383;transcription from RNA polymerase III promoter;0.00482624982075002!GO:0005669;transcription factor TFIID complex;0.00489228391356809!GO:0030258;lipid modification;0.00493647020221382!GO:0046983;protein dimerization activity;0.00528920747072327!GO:0043087;regulation of GTPase activity;0.00528920747072327!GO:0030521;androgen receptor signaling pathway;0.00544700437255007!GO:0043621;protein self-association;0.00566374591683974!GO:0005765;lysosomal membrane;0.00566374591683974!GO:0003678;DNA helicase activity;0.00576768269564103!GO:0009893;positive regulation of metabolic process;0.00584773223029561!GO:0048500;signal recognition particle;0.00589918554151907!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00601495438234816!GO:0051338;regulation of transferase activity;0.00609219839194456!GO:0008624;induction of apoptosis by extracellular signals;0.00612919119326082!GO:0003711;transcription elongation regulator activity;0.00615514860730742!GO:0033549;MAP kinase phosphatase activity;0.00621917542994072!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.00621917542994072!GO:0043681;protein import into mitochondrion;0.00657563507662935!GO:0030522;intracellular receptor-mediated signaling pathway;0.00658450054629301!GO:0000279;M phase;0.00661113862018181!GO:0046474;glycerophospholipid biosynthetic process;0.00663097180302455!GO:0003684;damaged DNA binding;0.00669463291943387!GO:0019901;protein kinase binding;0.00693303452847578!GO:0051348;negative regulation of transferase activity;0.00704432136437448!GO:0006839;mitochondrial transport;0.00716227714840122!GO:0004721;phosphoprotein phosphatase activity;0.00741012193719859!GO:0006919;caspase activation;0.00741012193719859!GO:0019904;protein domain specific binding;0.00758409165866953!GO:0051325;interphase;0.00758409165866953!GO:0044437;vacuolar part;0.00758409165866953!GO:0000209;protein polyubiquitination;0.00779556774384001!GO:0051249;regulation of lymphocyte activation;0.00793069611839971!GO:0005657;replication fork;0.00798465361862886!GO:0003702;RNA polymerase II transcription factor activity;0.00803138111120768!GO:0045321;leukocyte activation;0.00804682064420215!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00807550388864773!GO:0045603;positive regulation of endothelial cell differentiation;0.00812102774353718!GO:0015923;mannosidase activity;0.00823505944251842!GO:0050865;regulation of cell activation;0.00823505944251842!GO:0006818;hydrogen transport;0.00831376500768861!GO:0048487;beta-tubulin binding;0.00831595690759682!GO:0043414;biopolymer methylation;0.00832996699115915!GO:0000082;G1/S transition of mitotic cell cycle;0.00834082225190828!GO:0043549;regulation of kinase activity;0.00862203706620733!GO:0019210;kinase inhibitor activity;0.00889145225334162!GO:0005762;mitochondrial large ribosomal subunit;0.00890128939540084!GO:0000315;organellar large ribosomal subunit;0.00890128939540084!GO:0005819;spindle;0.00898763208950584!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00898763208950584!GO:0031902;late endosome membrane;0.00905197924046124!GO:0033157;regulation of intracellular protein transport;0.00911522531707807!GO:0042306;regulation of protein import into nucleus;0.00911522531707807!GO:0015992;proton transport;0.00933263022376876!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00938400876918302!GO:0050863;regulation of T cell activation;0.00938400876918302!GO:0043433;negative regulation of transcription factor activity;0.0094186521848891!GO:0040029;regulation of gene expression, epigenetic;0.00953445284381923!GO:0008033;tRNA processing;0.00958656797555149!GO:0030660;Golgi-associated vesicle membrane;0.00986337165192985!GO:0051098;regulation of binding;0.0101469666273348!GO:0001772;immunological synapse;0.0102139947148912!GO:0006470;protein amino acid dephosphorylation;0.0103126103466824!GO:0001667;ameboidal cell migration;0.0103587457475703!GO:0032027;myosin light chain binding;0.0103587457475703!GO:0051052;regulation of DNA metabolic process;0.0104642836390707!GO:0016788;hydrolase activity, acting on ester bonds;0.0107237767281358!GO:0006376;mRNA splice site selection;0.0107237767281358!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0107237767281358!GO:0051235;maintenance of localization;0.0112280369506635!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0112280369506635!GO:0004860;protein kinase inhibitor activity;0.0112839791968618!GO:0044452;nucleolar part;0.0114826196399206!GO:0008276;protein methyltransferase activity;0.0120355260642377!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0120360854635639!GO:0004527;exonuclease activity;0.0121668971425688!GO:0032259;methylation;0.0123542466870603!GO:0019900;kinase binding;0.0127098157568234!GO:0000049;tRNA binding;0.0127098157568234!GO:0050811;GABA receptor binding;0.0130377966238612!GO:0005099;Ras GTPase activator activity;0.0134043564836497!GO:0032508;DNA duplex unwinding;0.0134277833523597!GO:0032392;DNA geometric change;0.0134277833523597!GO:0050852;T cell receptor signaling pathway;0.0135922300859542!GO:0006302;double-strand break repair;0.0136248421546395!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0136884498318776!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0136884498318776!GO:0045047;protein targeting to ER;0.0136884498318776!GO:0030127;COPII vesicle coat;0.0137458316815034!GO:0012507;ER to Golgi transport vesicle membrane;0.0137458316815034!GO:0022890;inorganic cation transmembrane transporter activity;0.0137810466880594!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0146641491567031!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0146641491567031!GO:0008312;7S RNA binding;0.014915084284917!GO:0046854;phosphoinositide phosphorylation;0.0150113474207205!GO:0007006;mitochondrial membrane organization and biogenesis;0.0153579636616858!GO:0043281;regulation of caspase activity;0.0153762391169296!GO:0000287;magnesium ion binding;0.0154820272672908!GO:0032200;telomere organization and biogenesis;0.0155044803546456!GO:0000723;telomere maintenance;0.0155044803546456!GO:0008637;apoptotic mitochondrial changes;0.0159241349800973!GO:0045859;regulation of protein kinase activity;0.0159241349800973!GO:0051539;4 iron, 4 sulfur cluster binding;0.0159573093227472!GO:0031982;vesicle;0.0163385290224712!GO:0009117;nucleotide metabolic process;0.0163618470674049!GO:0005869;dynactin complex;0.016584169511513!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.016584169511513!GO:0032940;secretion by cell;0.0169836584692344!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0173787219224938!GO:0006595;polyamine metabolic process;0.0179999285235818!GO:0004518;nuclease activity;0.0181909003866491!GO:0045045;secretory pathway;0.0187508582301083!GO:0046467;membrane lipid biosynthetic process;0.0191118614293281!GO:0043280;positive regulation of caspase activity;0.0193375585615323!GO:0006289;nucleotide-excision repair;0.0194324459623148!GO:0030134;ER to Golgi transport vesicle;0.0195536162557365!GO:0032318;regulation of Ras GTPase activity;0.0198088076511396!GO:0033116;ER-Golgi intermediate compartment membrane;0.0198439311545246!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0198447739286753!GO:0000118;histone deacetylase complex;0.0198711684779586!GO:0000059;protein import into nucleus, docking;0.0199464642722226!GO:0000314;organellar small ribosomal subunit;0.0199464642722226!GO:0005763;mitochondrial small ribosomal subunit;0.0199464642722226!GO:0046426;negative regulation of JAK-STAT cascade;0.0199464642722226!GO:0006354;RNA elongation;0.0203496698917879!GO:0030118;clathrin coat;0.0203545653919719!GO:0032507;maintenance of cellular protein localization;0.0203726633977503!GO:0046834;lipid phosphorylation;0.0214496332969346!GO:0031325;positive regulation of cellular metabolic process;0.0217564334926197!GO:0019843;rRNA binding;0.0217564334926197!GO:0042990;regulation of transcription factor import into nucleus;0.0218462133926561!GO:0042991;transcription factor import into nucleus;0.0218462133926561!GO:0051091;positive regulation of transcription factor activity;0.0219396093510668!GO:0043022;ribosome binding;0.0219396093510668!GO:0016859;cis-trans isomerase activity;0.0220513031645194!GO:0045792;negative regulation of cell size;0.0223067185875745!GO:0047485;protein N-terminus binding;0.0223166205236845!GO:0005057;receptor signaling protein activity;0.0231227677284678!GO:0019058;viral infectious cycle;0.0234027675890624!GO:0043407;negative regulation of MAP kinase activity;0.024197447318525!GO:0051087;chaperone binding;0.0244395335197556!GO:0006950;response to stress;0.0244415338724289!GO:0005874;microtubule;0.0247030391364854!GO:0031461;cullin-RING ubiquitin ligase complex;0.0250774823382167!GO:0016279;protein-lysine N-methyltransferase activity;0.025607191979644!GO:0018024;histone-lysine N-methyltransferase activity;0.025607191979644!GO:0016278;lysine N-methyltransferase activity;0.025607191979644!GO:0006626;protein targeting to mitochondrion;0.025607191979644!GO:0004402;histone acetyltransferase activity;0.025607191979644!GO:0004468;lysine N-acetyltransferase activity;0.025607191979644!GO:0035258;steroid hormone receptor binding;0.0257383757521659!GO:0000781;chromosome, telomeric region;0.0258627191872399!GO:0007034;vacuolar transport;0.0259308333135442!GO:0031098;stress-activated protein kinase signaling pathway;0.0264671986242024!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0264671986242024!GO:0000119;mediator complex;0.0265162531322278!GO:0016853;isomerase activity;0.0267254858885378!GO:0030308;negative regulation of cell growth;0.0272760595654528!GO:0004177;aminopeptidase activity;0.0289455060222073!GO:0045185;maintenance of protein localization;0.0291272517482791!GO:0006984;ER-nuclear signaling pathway;0.0293551728208309!GO:0033239;negative regulation of amine metabolic process;0.0300298381342087!GO:0045763;negative regulation of amino acid metabolic process;0.0300298381342087!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0300298381342087!GO:0032386;regulation of intracellular transport;0.0301729927947154!GO:0031988;membrane-bound vesicle;0.0308982835691793!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.030989206811606!GO:0015002;heme-copper terminal oxidase activity;0.030989206811606!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.030989206811606!GO:0004129;cytochrome-c oxidase activity;0.030989206811606!GO:0000303;response to superoxide;0.0310415271237314!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0314710237522929!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0314710237522929!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0314710237522929!GO:0051056;regulation of small GTPase mediated signal transduction;0.0318695549411301!GO:0030217;T cell differentiation;0.0318695549411301!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0319740649580048!GO:0016569;covalent chromatin modification;0.0328051181807799!GO:0008625;induction of apoptosis via death domain receptors;0.0328712524947622!GO:0030145;manganese ion binding;0.0335598790602484!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0336703728952572!GO:0046578;regulation of Ras protein signal transduction;0.0336813687189472!GO:0042608;T cell receptor binding;0.0339550087755681!GO:0045069;regulation of viral genome replication;0.0344707468678979!GO:0005521;lamin binding;0.0345744667977727!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0346675948485903!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0346675948485903!GO:0045926;negative regulation of growth;0.0348766598654807!GO:0006013;mannose metabolic process;0.0354041541327578!GO:0045815;positive regulation of gene expression, epigenetic;0.0363886288915009!GO:0018193;peptidyl-amino acid modification;0.0370300337793514!GO:0051651;maintenance of cellular localization;0.0371302164093343!GO:0019079;viral genome replication;0.0372414786646489!GO:0004559;alpha-mannosidase activity;0.0372414786646489!GO:0015980;energy derivation by oxidation of organic compounds;0.0381065508152825!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0383308352164213!GO:0007004;telomere maintenance via telomerase;0.0384595691455768!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0386688554867605!GO:0031410;cytoplasmic vesicle;0.0388260803217634!GO:0008097;5S rRNA binding;0.0392470691540533!GO:0030880;RNA polymerase complex;0.0395091809905633!GO:0008138;protein tyrosine/serine/threonine phosphatase activity;0.039626698440166!GO:0001819;positive regulation of cytokine production;0.0399327705350044!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0400986698290454!GO:0016570;histone modification;0.0409325305964553!GO:0031647;regulation of protein stability;0.0409325305964553!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0418920900199033!GO:0031901;early endosome membrane;0.0423121162832415!GO:0006268;DNA unwinding during replication;0.042313940162197!GO:0004672;protein kinase activity;0.0425749695715311!GO:0008601;protein phosphatase type 2A regulator activity;0.042786227512515!GO:0006672;ceramide metabolic process;0.042786227512515!GO:0030968;unfolded protein response;0.0430413366829242!GO:0016605;PML body;0.0435323083611805!GO:0016272;prefoldin complex;0.0435931380678141!GO:0030036;actin cytoskeleton organization and biogenesis;0.04387361761803!GO:0002440;production of molecular mediator of immune response;0.0439832771646778!GO:0000776;kinetochore;0.0440775523640932!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0444820281820908!GO:0006497;protein amino acid lipidation;0.0453060487120764!GO:0046979;TAP2 binding;0.0454466551990507!GO:0046977;TAP binding;0.0454466551990507!GO:0046978;TAP1 binding;0.0454466551990507!GO:0006661;phosphatidylinositol biosynthetic process;0.0454466551990507!GO:0042393;histone binding;0.0457399521230996!GO:0000188;inactivation of MAPK activity;0.0460433913433506!GO:0030433;ER-associated protein catabolic process;0.0461438414982837!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0461438414982837!GO:0006406;mRNA export from nucleus;0.0484148347640213!GO:0044438;microbody part;0.0484148347640213!GO:0044439;peroxisomal part;0.0484148347640213!GO:0045947;negative regulation of translational initiation;0.0491357336818275!GO:0030833;regulation of actin filament polymerization;0.0491993832638175!GO:0051540;metal cluster binding;0.0491993832638175!GO:0051536;iron-sulfur cluster binding;0.0491993832638175!GO:0007254;JNK cascade;0.0491993832638175!GO:0022406;membrane docking;0.0495255292039121!GO:0048278;vesicle docking;0.0495255292039121!GO:0051051;negative regulation of transport;0.0495772789852916!GO:0045454;cell redox homeostasis;0.0499736869337241
|sample_id=11382
|sample_id=11382
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522
|top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11382-118B5;search_select_hide=table117:FF:11382-118B5
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:CD4+ T Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11998
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage26 years old adult
sexfemale
age26
cell typet cell, CD4+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD4T734
catalog number3H100-23-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005947
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11998 CAGE DRX008178 DRR009050
Accession ID Hg19

Library idBAMCTSS
CNhs11998 DRZ000475 DRZ001860
Accession ID Hg38

Library idBAMCTSS
CNhs11998 DRZ011825 DRZ013210
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005947
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GTGAAA sRNA-Seq DRX037159 DRR041525
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GTGAAA DRZ007167


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
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C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.15
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11998

Jaspar motifP-value
MA0002.24.33473e-4
MA0003.10.276
MA0004.10.955
MA0006.10.111
MA0007.10.644
MA0009.10.042
MA0014.10.907
MA0017.10.157
MA0018.26.19938e-11
MA0019.10.899
MA0024.10.76
MA0025.10.0314
MA0027.10.924
MA0028.10.0907
MA0029.10.216
MA0030.10.0112
MA0031.12.54189e-4
MA0035.20.365
MA0038.10.0471
MA0039.20.783
MA0040.10.658
MA0041.10.221
MA0042.10.677
MA0043.15.83864e-5
MA0046.10.0732
MA0047.20.406
MA0048.10.903
MA0050.11.49341e-5
MA0051.10.0383
MA0052.10.0728
MA0055.10.814
MA0057.10.228
MA0058.10.995
MA0059.10.798
MA0060.10.317
MA0061.16.26596e-7
MA0062.21.71693e-9
MA0065.20.644
MA0066.10.883
MA0067.17.16197e-4
MA0068.10.713
MA0069.10.882
MA0070.10.655
MA0071.10.482
MA0072.10.174
MA0073.10.767
MA0074.10.762
MA0076.10.0299
MA0077.10.0344
MA0078.10.986
MA0079.20.887
MA0080.22.98949e-10
MA0081.10.00744
MA0083.10.886
MA0084.10.528
MA0087.10.369
MA0088.10.179
MA0090.11.6737e-4
MA0091.10.208
MA0092.10.607
MA0093.10.926
MA0099.20.154
MA0100.10.99
MA0101.12.06805e-4
MA0102.20.883
MA0103.10.778
MA0104.20.363
MA0105.11.03783e-5
MA0106.10.0231
MA0107.12.37832e-4
MA0108.20.00742
MA0111.10.338
MA0112.20.0825
MA0113.10.282
MA0114.10.17
MA0115.10.163
MA0116.10.102
MA0117.10.0148
MA0119.10.388
MA0122.10.934
MA0124.10.152
MA0125.10.207
MA0131.10.0679
MA0135.10.372
MA0136.12.21623e-16
MA0137.20.193
MA0138.20.0238
MA0139.10.901
MA0140.10.42
MA0141.10.0575
MA0142.10.101
MA0143.10.181
MA0144.10.371
MA0145.10.00955
MA0146.10.853
MA0147.10.365
MA0148.10.96
MA0149.10.612
MA0150.10.398
MA0152.10.00195
MA0153.10.0921
MA0154.10.702
MA0155.10.135
MA0156.13.56145e-10
MA0157.10.00342
MA0159.10.794
MA0160.10.424
MA0162.10.104
MA0163.10.0374
MA0164.10.762
MA0258.10.503
MA0259.10.291



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11998

Novel motifP-value
10.96
100.00942
1000.639
1010.384
1020.839
1030.326
1040.945
1050.943
1060.276
1070.0114
1080.767
1090.958
110.768
1100.433
1110.853
1120.909
1130.387
1140.944
1150.664
1160.143
1170.00816
1180.485
1190.315
120.855
1200.473
1210.559
1220.902
1231.8901e-4
1240.601
1250.78
1260.914
1270.62
1280.639
1290.413
130.761
1300.172
1310.679
1320.232
1330.878
1340.89
1350.293
1360.706
1370.0289
1380.624
1390.0987
140.811
1400.381
1410.888
1420.383
1430.0431
1440.874
1450.367
1460.239
1470.0312
1480.58
1490.175
150.472
1500.975
1510.643
1520.694
1530.665
1540.159
1550.0554
1560.807
1570.669
1580.00492
1590.804
160.274
1600.0321
1610.659
1620.0135
1630.732
1640.074
1650.852
1660.257
1670.147
1680.43
1690.109
170.579
180.658
190.0261
20.1
200.157
210.949
220.164
230.863
240.452
250.184
260.984
270.676
280.5
290.0676
30.692
300.049
310.497
320.00673
330.415
340.21
350.517
360.142
370.594
380.519
390.295
40.996
400.529
410.192
420.38
430.893
440.864
450.0857
460.988
470.61
480.973
490.379
50.898
500.398
510.768
520.729
530.448
540.705
550.564
560.675
570.879
580.245
590.134
60.994
600.68
610.347
620.317
630.672
640.97
650.497
660.438
670.457
680.86
690.606
70.803
700.178
710.28
720.61
730.821
740.533
750.0617
760.177
770.0015
780.868
790.635
80.295
800.0822
810.966
820.564
830.709
840.122
850.879
860.0769
870.629
880.936
890.00176
90.663
900.411
910.777
920.946
930.842
940.505
950.209
960.953
970.379
980.424
991.57038e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11998


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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