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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005406
|accession_numbers=CAGE;DRX008074;DRR008946;DRZ000371;DRZ001756;DRZ011721;DRZ013106
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255,CL:0000451,CL:0000784
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255,CL:0000451,CL:0000784
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!3.26!1824.23!IRF8;;chr6:391743..391759,+!p1@IRF4!3.24!1732.11!IRF4;;chr19:50922187..50922204,+!p1@SPIB!2.37!234.02!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.11!129.27!PLEK;;chr18:53257001..53257015,-!p5@TCF4!1.96!151.18!TCF4;;chr6:45390599..45390662,+!p11@RUNX2!1.94!102.89!RUNX2;;chr2:100759010..100759035,-!p1@AFF3!1.92!82.84!AFF3;;chr8:135614120..135614149,-!p5@ZFAT!1.92!81.35!ZFAT;;chr1:244214577..244214593,+!p1@ZNF238!1.91!80.23!ZNF238;;chr11:615942..615957,-!p1@IRF7!1.84!609.93!IRF7;;chr16:85936412..85936431,+!p2@IRF8!1.82!64.63!IRF8;;chr8:135613849..135613883,-!p7@ZFAT!1.81!63.89!ZFAT;;chr19:12721790..12721810,+!p2@ZNF791!1.78!156.01!ZNF791;;chr8:135614084..135614119,-!p4@ZFAT!1.78!59.43!ZFAT;;chr2:68592394..68592405,+!p2@PLEK!1.72!52.00!PLEK;;chr2:100759037..100759058,-!p2@AFF3!1.72!51.63!AFF3;;chr6:45390300..45390335,+!p4@RUNX2!1.71!77.26!RUNX2;;chr7:50344289..50344323,+!p1@IKZF1!1.71!50.52!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.40!IKZF1;;chr19:54041669..54041697,+!p2@ZNF331!1.69!47.55!ZNF331;;chr18:53253297..53253322,-!p30@TCF4!1.67!45.69!TCF4;;chr5:142782823..142782854,-!p3@NR3C1!1.66!62.78!NR3C1;;chr7:50344251..50344288,+!p3@IKZF1!1.63!41.97!IKZF1;;chr1:244214611..244214624,+!p4@ZNF238!1.59!37.89!ZNF238;;chr6:135502501..135502546,+!p1@MYB!1.56!42.35!MYB;;chr18:53255839..53255854,-!p13@TCF4!1.55!40.86!TCF4;;chr6:135502408..135502459,+!p2@MYB!1.53!37.89!MYB;;chr1:244214655..244214666,+!p7@ZNF238!1.53!32.69!ZNF238;;chr9:102584262..102584276,+!p1@NR4A3!1.52!70.58!NR4A3;;chr6:45390269..45390298,+!p5@RUNX2!1.50!49.78!RUNX2;;chr19:54058073..54058088,+!p1@ZNF331!1.50!30.46!ZNF331;;chr13:72441315..72441454,-!p1@DACH1!1.49!57.95!DACH1;;chr5:142814241..142814278,-!p12@NR3C1!1.49!30.09!NR3C1;;chr11:47400078..47400106,-!p1@SPI1!1.48!29.35!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.47!209.87!MEF2C;;chr8:135613895..135613921,-!p8@ZFAT!1.43!25.63!ZFAT;;chr19:36391434..36391450,-!p1@NFKBID!1.42!49.03!NFKBID;;chr12:111537227..111537239,+!p7@CUX2!1.40!24.14!CUX2;;chr1:92949331..92949377,-!p2@GFI1!1.38!23.03!GFI1;;chr15:31619140..31619152,+!p11@KLF13!1.36!21.92!KLF13;;chrX:129244430..129244442,-!p5@ELF4!1.32!20.06!ELF4;;chr2:145277640..145277771,-!p1@ZEB2!1.30!245.90!ZEB2;;chr7:104654690..104654704,+!p2@MLL5!1.30!37.15!MLL5;;chr2:97202480..97202499,+!p1@ARID5A!1.29!183.13!ARID5A;;chr18:53255415..53255491,-!p1@TCF4!1.29!154.53!TCF4;;chr10:35484053..35484076,+!p1@CREM!1.29!45.32!CREM;;chr2:60778035..60778060,-!p4@BCL11A!1.28!21.54!BCL11A;;chr2:60781201..60781258,-!p3@BCL11A!1.27!17.83!BCL11A;;chr9:117150254..117150271,-!p1@AKNA!1.25!44.95!AKNA;;chr1:40367530..40367597,-!p1@MYCL1!1.25!30.46!MYCL1;;chr18:53253077..53253100,-!p46@TCF4!1.25!16.72!TCF4;;chr2:100758991..100759009,-!p3@AFF3!1.24!16.34!AFF3;;chr7:104654718..104654741,+!p3@MLL5!1.23!23.40!MLL5;;chr1:92950138..92950159,-!p4@GFI1!1.23!15.97!GFI1;;chr9:102584241..102584261,+!p4@NR4A3!1.22!24.14!NR4A3;;chr2:192015701..192015743,-!p1@STAT4!1.22!21.17!STAT4;;chr13:72441074..72441172,-!p2@DACH1!1.22!15.60!DACH1;;chr7:127032330..127032356,-!p3@ZNF800!1.21!19.32!ZNF800;;chr5:142782862..142782881,-!p11@NR3C1!1.21!15.23!NR3C1;;chr16:85936539..85936562,+!p3@IRF8!1.21!15.23!IRF8;;chr6:45390442..45390479,+!p8@RUNX2!1.20!22.66!RUNX2;;chr15:31619200..31619211,+!p12@KLF13!1.20!15.97!KLF13;;chr6:44233252..44233296,-!p1@NFKBIE!1.19!140.41!NFKBIE;;chr6:12008986..12009016,+!p3@HIVEP1!1.19!45.32!HIVEP1;;chr6:12009042..12009092,+!p6@HIVEP1!1.19!18.94!HIVEP1;;chr2:61108695..61108753,+!p1@REL!1.18!96.21!REL;;chr18:52989565..52989623,-!p9@TCF4!1.18!18.20!TCF4;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!1.17!603.99!TBX19;;chr3:18486354..18486377,-!p2@SATB1!1.16!16.72!SATB1;;chr8:86089627..86089653,+!p3@E2F5!1.16!15.23!E2F5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.16!13.37!ZBED1;;chr14:74226961..74227020,-!p1@C14orf43!1.13!82.09!C14orf43;;chr18:53257027..53257052,-!p3@TCF4!1.13!50.15!TCF4;;chr10:104154415..104154434,+!p5@NFKB2!1.13!12.63!NFKB2;;chr2:61108878..61108891,+!p5@REL!1.13!12.63!REL;;chr12:11802753..11802834,+!p2@ETV6!1.12!60.18!ETV6;;chr2:60781148..60781159,-!p8@BCL11A!1.12!12.26!BCL11A;;chr18:53256971..53256984,-!p26@TCF4!1.12!12.26!TCF4;;chr6:45296048..45296082,+!p1@RUNX2!1.11!13.74!RUNX2;;chr4:106068026..106068084,+!p1@TET2!1.10!104.38!TET2;;chr1:156470515..156470542,-!p2@MEF2D!1.10!61.29!MEF2D;;chr3:48282587..48282603,+!p1@ZNF589!1.10!51.63!ZNF589;;chr15:74833584..74833626,+!p1@ARID3B!1.10!27.12!ARID3B;;chr1:157108728..157108744,-!p5@ETV3!1.10!11.52!ETV3;;chr4:140005443..140005527,-!p2@ELF2!1.09!67.98!ELF2;;chr16:85936600..85936623,+!p4@IRF8!1.08!11.14!IRF8;;chr18:53253323..53253359,-!p19@TCF4!1.07!10.77!TCF4;;chr9:102584278..102584285,+!p5@NR4A3!1.07!10.77!NR4A3;;chr10:104155480..104155534,+!p2@NFKB2!1.06!68.72!NFKB2;;chr19:54041645..54041661,+!p5@ZNF331!1.06!10.40!ZNF331;;chr1:40367668..40367684,-!p2@MYCL1!1.06!10.40!MYCL1;;chr6:45390399..45390418,+!p15@RUNX2!1.06!10.40!RUNX2;;chr2:174828545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|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!3.26!1824.23!IRF8;;chr6:391743..391759,+!p1@IRF4!3.24!1732.11!IRF4;;chr19:50922187..50922204,+!p1@SPIB!2.37!234.02!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.11!129.27!PLEK;;chr18:53257001..53257015,-!p5@TCF4!1.96!151.18!TCF4;;chr6:45390599..45390662,+!p11@RUNX2!1.94!102.89!RUNX2;;chr2:100759010..100759035,-!p1@AFF3!1.92!82.84!AFF3;;chr8:135614120..135614149,-!p5@ZFAT!1.92!81.35!ZFAT;;chr1:244214577..244214593,+!p1@ZNF238!1.91!80.23!ZNF238;;chr11:615942..615957,-!p1@IRF7!1.84!609.93!IRF7;;chr16:85936412..85936431,+!p2@IRF8!1.82!64.63!IRF8;;chr8:135613849..135613883,-!p7@ZFAT!1.81!63.89!ZFAT;;chr19:12721790..12721810,+!p2@ZNF791!1.78!156.01!ZNF791;;chr8:135614084..135614119,-!p4@ZFAT!1.78!59.43!ZFAT;;chr2:68592394..68592405,+!p2@PLEK!1.72!52.00!PLEK;;chr2:100759037..100759058,-!p2@AFF3!1.72!51.63!AFF3;;chr6:45390300..45390335,+!p4@RUNX2!1.71!77.26!RUNX2;;chr7:50344289..50344323,+!p1@IKZF1!1.71!50.52!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.40!IKZF1;;chr19:54041669..54041697,+!p2@ZNF331!1.69!47.55!ZNF331;;chr18:53253297..53253322,-!p30@TCF4!1.67!45.69!TCF4;;chr5:142782823..142782854,-!p3@NR3C1!1.66!62.78!NR3C1;;chr7:50344251..50344288,+!p3@IKZF1!1.63!41.97!IKZF1;;chr1:244214611..244214624,+!p4@ZNF238!1.59!37.89!ZNF238;;chr6:135502501..135502546,+!p1@MYB!1.56!42.35!MYB;;chr18:53255839..53255854,-!p13@TCF4!1.55!40.86!TCF4;;chr6:135502408..135502459,+!p2@MYB!1.53!37.89!MYB;;chr1:244214655..244214666,+!p7@ZNF238!1.53!32.69!ZNF238;;chr9:102584262..102584276,+!p1@NR4A3!1.52!70.58!NR4A3;;chr6:45390269..45390298,+!p5@RUNX2!1.50!49.78!RUNX2;;chr19:54058073..54058088,+!p1@ZNF331!1.50!30.46!ZNF331;;chr13:72441315..72441454,-!p1@DACH1!1.49!57.95!DACH1;;chr5:142814241..142814278,-!p12@NR3C1!1.49!30.09!NR3C1;;chr11:47400078..47400106,-!p1@SPI1!1.48!29.35!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.47!209.87!MEF2C;;chr8:135613895..135613921,-!p8@ZFAT!1.43!25.63!ZFAT;;chr19:36391434..36391450,-!p1@NFKBID!1.42!49.03!NFKBID;;chr12:111537227..111537239,+!p7@CUX2!1.40!24.14!CUX2;;chr1:92949331..92949377,-!p2@GFI1!1.38!23.03!GFI1;;chr15:31619140..31619152,+!p11@KLF13!1.36!21.92!KLF13;;chrX:129244430..129244442,-!p5@ELF4!1.32!20.06!ELF4;;chr2:145277640..145277771,-!p1@ZEB2!1.30!245.90!ZEB2;;chr7:104654690..104654704,+!p2@MLL5!1.30!37.15!MLL5;;chr2:97202480..97202499,+!p1@ARID5A!1.29!183.13!ARID5A;;chr18:53255415..53255491,-!p1@TCF4!1.29!154.53!TCF4;;chr10:35484053..35484076,+!p1@CREM!1.29!45.32!CREM;;chr2:60778035..60778060,-!p4@BCL11A!1.28!21.54!BCL11A;;chr2:60781201..60781258,-!p3@BCL11A!1.27!17.83!BCL11A;;chr9:117150254..117150271,-!p1@AKNA!1.25!44.95!AKNA;;chr1:40367530..40367597,-!p1@MYCL1!1.25!30.46!MYCL1;;chr18:53253077..53253100,-!p46@TCF4!1.25!16.72!TCF4;;chr2:100758991..100759009,-!p3@AFF3!1.24!16.34!AFF3;;chr7:104654718..104654741,+!p3@MLL5!1.23!23.40!MLL5;;chr1:92950138..92950159,-!p4@GFI1!1.23!15.97!GFI1;;chr9:102584241..102584261,+!p4@NR4A3!1.22!24.14!NR4A3;;chr2:192015701..192015743,-!p1@STAT4!1.22!21.17!STAT4;;chr13:72441074..72441172,-!p2@DACH1!1.22!15.60!DACH1;;chr7:127032330..127032356,-!p3@ZNF800!1.21!19.32!ZNF800;;chr5:142782862..142782881,-!p11@NR3C1!1.21!15.23!NR3C1;;chr16:85936539..85936562,+!p3@IRF8!1.21!15.23!IRF8;;chr6:45390442..45390479,+!p8@RUNX2!1.20!22.66!RUNX2;;chr15:31619200..31619211,+!p12@KLF13!1.20!15.97!KLF13;;chr6:44233252..44233296,-!p1@NFKBIE!1.19!140.41!NFKBIE;;chr6:12008986..12009016,+!p3@HIVEP1!1.19!45.32!HIVEP1;;chr6:12009042..12009092,+!p6@HIVEP1!1.19!18.94!HIVEP1;;chr2:61108695..61108753,+!p1@REL!1.18!96.21!REL;;chr18:52989565..52989623,-!p9@TCF4!1.18!18.20!TCF4;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!1.17!603.99!TBX19;;chr3:18486354..18486377,-!p2@SATB1!1.16!16.72!SATB1;;chr8:86089627..86089653,+!p3@E2F5!1.16!15.23!E2F5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.16!13.37!ZBED1;;chr14:74226961..74227020,-!p1@C14orf43!1.13!82.09!C14orf43;;chr18:53257027..53257052,-!p3@TCF4!1.13!50.15!TCF4;;chr10:104154415..104154434,+!p5@NFKB2!1.13!12.63!NFKB2;;chr2:61108878..61108891,+!p5@REL!1.13!12.63!REL;;chr12:11802753..11802834,+!p2@ETV6!1.12!60.18!ETV6;;chr2:60781148..60781159,-!p8@BCL11A!1.12!12.26!BCL11A;;chr18:53256971..53256984,-!p26@TCF4!1.12!12.26!TCF4;;chr6:45296048..45296082,+!p1@RUNX2!1.11!13.74!RUNX2;;chr4:106068026..106068084,+!p1@TET2!1.10!104.38!TET2;;chr1:156470515..156470542,-!p2@MEF2D!1.10!61.29!MEF2D;;chr3:48282587..48282603,+!p1@ZNF589!1.10!51.63!ZNF589;;chr15:74833584..74833626,+!p1@ARID3B!1.10!27.12!ARID3B;;chr1:157108728..157108744,-!p5@ETV3!1.10!11.52!ETV3;;chr4:140005443..140005527,-!p2@ELF2!1.09!67.98!ELF2;;chr16:85936600..85936623,+!p4@IRF8!1.08!11.14!IRF8;;chr18:53253323..53253359,-!p19@TCF4!1.07!10.77!TCF4;;chr9:102584278..102584285,+!p5@NR4A3!1.07!10.77!NR4A3;;chr10:104155480..104155534,+!p2@NFKB2!1.06!68.72!NFKB2;;chr19:54041645..54041661,+!p5@ZNF331!1.06!10.40!ZNF331;;chr1:40367668..40367684,-!p2@MYCL1!1.06!10.40!MYCL1;;chr6:45390399..45390418,+!p15@RUNX2!1.06!10.40!RUNX2;;chr2:174828545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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000784;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor3.CNhs12200.11385-118B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor3.CNhs12200.11385-118B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor3.CNhs12200.11385-118B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor3.CNhs12200.11385-118B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor3.CNhs12200.11385-118B8.hg38.nobarcode.ctss.bed.gz
|id=FF:11385-118B8
|id=FF:11385-118B8
|is_a=EFO:0002091;;FF:0000045
|is_a=EFO:0002091;;FF:0000045
|is_obsolete=
|is_obsolete=
|library_id=CNhs12200
|library_id_phase_based=2:CNhs12200
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11385
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11385
|name=Dendritic Cells - plasmacytoid, donor3
|name=Dendritic Cells - plasmacytoid, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12200,LSID976,release010,COMPLETED
|profile_hcage=CNhs12200,LSID976,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_catalog_number=3H100-72-5
Line 60: Line 79:
|rna_weight_ug=1
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|sample_age=24
|sample_age=24
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 101:
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|top_motifs=NANOG{mouse}:2.41180922733;LMO2:2.10762416144;ELF1,2,4:1.79895356081;CREB1:1.63985312305;PAX2:1.59799504592;PAX6:1.58628183383;SPI1:1.56811327435;ATF5_CREB3:1.55339792126;RUNX1..3:1.52442424666;NANOG:1.52280938185;NFKB1_REL_RELA:1.50442318965;NFIL3:1.41512526839;FOXN1:1.34587585484;DMAP1_NCOR{1,2}_SMARC:1.33135834747;RFX2..5_RFXANK_RFXAP:1.33034862454;TGIF1:1.32570674494;SPIB:1.30780362217;EN1,2:1.29857451045;HMX1:1.23000136013;FOXQ1:1.21136900652;ETS1,2:1.20832828161;TLX2:1.17376880174;ELK1,4_GABP{A,B1}:1.1212073221;NHLH1,2:1.05674178052;ATF4:1.04825428739;MYB:0.996268088753;AIRE:0.987668484787;FOX{F1,F2,J1}:0.958747553881;HIF1A:0.958462890387;BREu{core}:0.898852644092;MYOD1:0.868925250884;RORA:0.847216473155;PDX1:0.835584921581;CRX:0.826645070106;MYFfamily:0.773379288669;IRF1,2:0.68237321812;ZEB1:0.632495815521;FOXA2:0.629683803488;POU2F1..3:0.566172469098;BPTF:0.553741803833;TFAP4:0.516025158357;RXRA_VDR{dimer}:0.515533028735;SMAD1..7,9:0.512495556253;ALX1:0.509739620319;NR5A1,2:0.492358619109;FOX{D1,D2}:0.474530280154;SREBF1,2:0.464065146458;PAX3,7:0.455789306487;XBP1:0.439843520816;ESR1:0.436414478634;ESRRA:0.399455387541;EP300:0.378071075664;OCT4_SOX2{dimer}:0.352442235464;ATF6:0.338494593117;ZNF148:0.323225102364;TAL1_TCF{3,4,12}:0.320966316765;MEF2{A,B,C,D}:0.317441970159;PAX8:0.297580174103;FOXD3:0.294027647678;RBPJ:0.26767292937;IRF7:0.264043863668;GATA6:0.257112851364;PPARG:0.254111588869;FOX{I1,J2}:0.247404096628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.241982906479;FOXO1,3,4:0.241266246074;NR6A1:0.218611414018;JUN:0.193088847805;ATF2:0.147485115797;LEF1_TCF7_TCF7L1,2:0.115944975175;MAFB:0.115193171475;SNAI1..3:0.113841119692;ZNF238:0.11186173267;CUX2:0.104791425782;HBP1_HMGB_SSRP1_UBTF:0.10198165223;BACH2:0.0973081545076;YY1:0.0954145198789;HMGA1,2:0.0952664817989;FOSL2:0.0639095619535;SOX2:0.0501435224496;POU5F1:0.0235507338428;HAND1,2:0.0189049558198;CDX1,2,4:0.00746169897165;FOS_FOS{B,L1}_JUN{B,D}:-0.018217850043;STAT1,3:-0.0307135586947;EGR1..3:-0.106261811653;AR:-0.108379213416;PRRX1,2:-0.110170586371;CEBPA,B_DDIT3:-0.116170131369;ZFP161:-0.125399107176;HNF4A_NR2F1,2:-0.147787003571;SOX{8,9,10}:-0.1501123314;NFE2:-0.15151924647;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.158963745692;HLF:-0.16010017759;CDC5L:-0.225144355278;NFATC1..3:-0.230265232724;NRF1:-0.231549254906;DBP:-0.233489682462;T:-0.233752943822;EVI1:-0.248085692704;NFY{A,B,C}:-0.256494430086;HOXA9_MEIS1:-0.266033310931;HNF1A:-0.287141151135;SOX5:-0.29029688353;HSF1,2:-0.308891925771;TFAP2{A,C}:-0.309798832;MED-1{core}:-0.316968763223;NFIX:-0.324949468307;E2F1..5:-0.334668048645;FOXP3:-0.339925678352;POU1F1:-0.351929364271;ALX4:-0.353661620351;SOX17:-0.379063925905;ZBTB6:-0.379886686347;PAX4:-0.390047205019;NKX2-2,8:-0.397625724955;bHLH_family:-0.411358121535;STAT5{A,B}:-0.414109550213;ZBTB16:-0.436179354001;NKX3-2:-0.439088964409;RFX1:-0.445556263445;NFE2L2:-0.466704333582;FOXP1:-0.474094396429;ZNF143:-0.478236960646;REST:-0.503072108745;STAT2,4,6:-0.515949621627;TFCP2:-0.51612692468;FOXL1:-0.516762854377;NKX2-3_NKX2-5:-0.553952163231;AHR_ARNT_ARNT2:-0.554214245046;PATZ1:-0.555705272393;MZF1:-0.581227095152;HES1:-0.600666911003;HOX{A4,D4}:-0.610720666718;GLI1..3:-0.628053549961;PRDM1:-0.633134102932;PAX5:-0.636321373486;GATA4:-0.638238275302;NR3C1:-0.647481934971;NKX3-1:-0.713400774831;GZF1:-0.714640283921;MTF1:-0.722280842845;PBX1:-0.732116420749;MAZ:-0.760171964046;SPZ1:-0.781276537055;HOX{A6,A7,B6,B7}:-0.786154674971;NKX2-1,4:-0.788135186749;ARID5B:-0.800987849333;HOX{A5,B5}:-0.803506868874;SP1:-0.810239477118;NR1H4:-0.811815744518;RREB1:-0.824269349493;RXR{A,B,G}:-0.827658020507;MTE{core}:-0.831153115363;TP53:-0.838794819237;TBP:-0.867218379889;SRF:-0.877325080015;GTF2A1,2:-0.889841184344;ZNF384:-0.910913527061;LHX3,4:-0.922350152463;HIC1:-0.932613297592;GCM1,2:-0.946801105353;IKZF2:-0.947412652906;TEF:-0.968065871032;MYBL2:-0.969079910674;TFAP2B:-0.977090382798;GFI1:-1.00181465941;POU3F1..4:-1.14773621119;VSX1,2:-1.19964361573;EBF1:-1.20147359058;NKX6-1,2:-1.20530876198;TBX4,5:-1.21809883655;ADNP_IRX_SIX_ZHX:-1.30418788038;NFE2L1:-1.34860658828;TFDP1:-1.36988778508;ONECUT1,2:-1.37420230539;GFI1B:-1.41517358813;TEAD1:-1.43267973393;GTF2I:-1.45859109241;POU6F1:-1.46739940265;UFEwm:-1.47718114504;TOPORS:-1.53113681252;KLF4:-1.55579258653;PITX1..3:-1.60810805939;XCPE1{core}:-1.61039480615;ZIC1..3:-1.63084051036;ZNF423:-1.6819076308;IKZF1:-1.69088130414;TLX1..3_NFIC{dimer}:-1.90133033868;PAX1,9:-2.02954694869;FOXM1:-2.37362433497
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11385-118B8;search_select_hide=table117:FF:11385-118B8
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:Dendritic Cells - plasmacytoid, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12200
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage24 years old adult
sexfemale
age24
cell typedendritic cell, plasmacytoid
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberPDC739
catalog number3H100-72-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005406
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12200 CAGE DRX008074 DRR008946
Accession ID Hg19

Library idBAMCTSS
CNhs12200 DRZ000371 DRZ001756
Accession ID Hg38

Library idBAMCTSS
CNhs12200 DRZ011721 DRZ013106
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.197
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.255
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.325
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0212
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.137
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.429
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.429
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.644
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.395
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.255
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.137
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0287
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.448
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.241
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.131
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.137
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.325
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0779
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.137
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.232
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.583
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.25
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.137
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.137
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.189
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature1.122
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.46
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.137
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12200

Jaspar motifP-value
MA0002.21.08811e-8
MA0003.10.671
MA0004.10.466
MA0006.10.488
MA0007.10.393
MA0009.10.338
MA0014.10.895
MA0017.10.974
MA0018.25.34024e-4
MA0019.10.595
MA0024.10.413
MA0025.10.0106
MA0027.10.304
MA0028.10.00133
MA0029.10.529
MA0030.10.14
MA0031.10.0553
MA0035.20.656
MA0038.10.234
MA0039.20.956
MA0040.10.511
MA0041.10.346
MA0042.10.142
MA0043.10.00692
MA0046.10.668
MA0047.20.576
MA0048.14.02204e-5
MA0050.16.50698e-4
MA0051.10.0343
MA0052.10.0111
MA0055.15.72061e-6
MA0057.10.343
MA0058.10.214
MA0059.10.636
MA0060.10.289
MA0061.13.23577e-11
MA0062.21.31544e-16
MA0065.20.234
MA0066.10.317
MA0067.17.12581e-4
MA0068.10.184
MA0069.10.616
MA0070.10.312
MA0071.10.976
MA0072.10.442
MA0073.10.236
MA0074.10.92
MA0076.16.16525e-6
MA0077.10.14
MA0078.10.877
MA0079.20.42
MA0080.29.99824e-13
MA0081.11.64643e-5
MA0083.10.1
MA0084.10.247
MA0087.10.708
MA0088.10.892
MA0090.13.50909e-4
MA0091.10.012
MA0092.10.981
MA0093.10.475
MA0099.20.00419
MA0100.10.42
MA0101.16.40172e-11
MA0102.20.0251
MA0103.10.0215
MA0104.20.082
MA0105.11.38635e-7
MA0106.10.069
MA0107.16.89966e-11
MA0108.20.00141
MA0111.10.476
MA0112.20.392
MA0113.10.501
MA0114.10.71
MA0115.10.207
MA0116.10.0164
MA0117.10.0869
MA0119.10.278
MA0122.10.113
MA0124.10.847
MA0125.10.809
MA0131.10.763
MA0135.10.22
MA0136.11.58433e-16
MA0137.20.865
MA0138.20.652
MA0139.10.896
MA0140.10.803
MA0141.10.941
MA0142.10.529
MA0143.10.619
MA0144.10.785
MA0145.10.252
MA0146.10.19
MA0147.10.13
MA0148.10.649
MA0149.10.864
MA0150.10.0153
MA0152.10.1
MA0153.10.0107
MA0154.10.0221
MA0155.10.585
MA0156.13.79679e-14
MA0157.10.203
MA0159.10.327
MA0160.10.597
MA0162.10.395
MA0163.10.00118
MA0164.10.852
MA0258.10.357
MA0259.10.386



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12200

Novel motifP-value
10.759
100.0483
1000.572
1010.68
1020.679
1030.0697
1040.459
1050.501
1060.062
1070.4
1080.116
1090.141
110.369
1100.907
1110.55
1120.881
1130.596
1140.384
1150.494
1160.308
1170.0064
1180.43
1190.702
120.407
1200.593
1210.539
1220.156
1230.96
1240.148
1250.252
1260.17
1270.329
1280.368
1290.314
130.104
1300.675
1310.645
1320.0322
1330.238
1340.573
1350.689
1360.771
1370.00188
1380.761
1390.116
140.254
1400.844
1410.438
1420.793
1430.00939
1440.5
1450.539
1460.478
1470.134
1480.121
1490.357
150.1
1500.532
1510.446
1520.787
1530.435
1540.955
1550.0354
1560.916
1570.545
1580.323
1590.248
160.466
1600.309
1610.397
1620.194
1630.712
1640.576
1650.32
1660.281
1670.74
1680.76
1690.701
170.849
180.739
190.229
20.877
200.403
210.983
220.723
230.678
240.229
250.0907
260.989
270.0973
280.286
290.0275
30.323
300.448
310.786
320.0494
330.292
340.906
350.0977
360.187
370.131
380.436
390.414
40.109
400.975
410.0279
420.101
430.286
440.672
450.78
460.578
470.602
480.786
490.292
50.437
500.672
510.339
520.893
530.697
540.997
550.671
560.764
570.858
580.038
590.797
60.796
600.274
610.0772
620.0255
630.956
640.659
650.833
660.577
670.138
680.57
690.539
70.0859
700.0855
710.139
720.154
730.717
740.316
750.154
760.505
770.455
780.018
790.589
80.458
800.00836
810.534
820.277
830.218
840.367
850.543
860.0819
870.0622
880.313
890.63
90.375
900.086
910.982
920.734
930.598
940.255
950.0125
960.932
970.849
980.228
993.77779e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12200


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000784 (plasmacytoid dendritic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000045 (human plasmacytoid dendritic cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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