FF:11391-118C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005430 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005430 | ||
|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159;DRZ012124;DRZ013509 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037019;DRR041385;DRZ007027 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11391-118C5 | |id=FF:11391-118C5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000170 | ||
|is_obsolete= | |||
|library_id=CNhs12004 | |||
|library_id_phase_based=2:CNhs12004 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11391 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TAGCTT.11391 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11391 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TAGCTT.11391 | |||
|name=Smooth Muscle Cells - Brain Vascular, donor3 | |name=Smooth Muscle Cells - Brain Vascular, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12004,LSID837,release011,COMPLETED | |profile_hcage=CNhs12004,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.130417783472082,0,0.197361702983896,0.0831689066633565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454140924152421,0,0,0,0,0,0.19277791729041,0,0,0.113177655156431,0,0,0,0,0,0,0,0,0,0,0.140275557177927,0,0.388808464735001,0,0,0,0,0,0,0,0,0.0136734248353789,0,0,0,0.331180450649292,0,0.0290042909886897,0,0.336884912534443,0,0,0.0990786846005099,0.0757768918964265,0,0,0,0,0,0,0,0.140275557177927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00721748182739756,0.0334489679680147,0.0378884459482133,0,0,-0.0386244240760603,0.119953916377889,0.0378884459482133,0.0757768918964265,0.0982111559068035,0,-0.0222584593412799,-0.100588754852682,0,0,0,0,0,0,0.0757768918964265,0,0,0,0,0,0,0,0,0,0,0.00183756198434244,0,0,0,0.213989418629122,0.339840840138277,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC1105 | |rna_catalog_number=SC1105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118C5 | |rna_tube_id=118C5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.TAGCTT | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;4.58373120347347e-211!GO:0044424;intracellular part;3.52142723327878e-209!GO:0043226;organelle;1.66449561476259e-158!GO:0043229;intracellular organelle;3.24041499256861e-158!GO:0044444;cytoplasmic part;4.47433136146551e-158!GO:0043231;intracellular membrane-bound organelle;1.15078792254946e-157!GO:0043227;membrane-bound organelle;2.30848176727485e-157!GO:0044422;organelle part;2.78846152669856e-123!GO:0044446;intracellular organelle part;7.53424588886479e-122!GO:0032991;macromolecular complex;3.56823568688319e-78!GO:0044238;primary metabolic process;3.04330244435223e-76!GO:0044237;cellular metabolic process;1.95260812727506e-75!GO:0030529;ribonucleoprotein complex;7.10086920936054e-73!GO:0005515;protein binding;6.7723770161363e-70!GO:0005739;mitochondrion;3.7743623670153e-69!GO:0043170;macromolecule metabolic process;4.75234763333359e-63!GO:0031090;organelle membrane;1.08521548024444e-61!GO:0043233;organelle lumen;6.13641678036339e-60!GO:0031974;membrane-enclosed lumen;6.13641678036339e-60!GO:0019538;protein metabolic process;1.50934329067362e-57!GO:0003723;RNA binding;1.66006450538639e-55!GO:0044260;cellular macromolecule metabolic process;4.97197184802253e-52!GO:0044267;cellular protein metabolic process;7.44988671050803e-51!GO:0044428;nuclear part;1.39935621555539e-50!GO:0009058;biosynthetic process;2.558666944605e-49!GO:0005840;ribosome;2.66797274042897e-49!GO:0033036;macromolecule localization;9.25498513762373e-48!GO:0015031;protein transport;1.27074172681619e-47!GO:0006412;translation;3.46504868824981e-46!GO:0044429;mitochondrial part;4.72750166959249e-46!GO:0045184;establishment of protein localization;6.84526165704663e-45!GO:0008104;protein localization;1.11173633189953e-44!GO:0003735;structural constituent of ribosome;9.25090717700245e-44!GO:0016043;cellular component organization and biogenesis;2.82945085974314e-43!GO:0031967;organelle envelope;9.03506540649922e-42!GO:0031975;envelope;2.34779444471398e-41!GO:0044249;cellular biosynthetic process;5.22824361911352e-41!GO:0009059;macromolecule biosynthetic process;8.75201038114015e-41!GO:0005829;cytosol;1.96919902894021e-40!GO:0005634;nucleus;5.22047214361232e-40!GO:0043234;protein complex;1.06131129010575e-38!GO:0033279;ribosomal subunit;5.46778818092923e-38!GO:0046907;intracellular transport;2.91533195283512e-37!GO:0006396;RNA processing;4.22956704010737e-33!GO:0005740;mitochondrial envelope;2.54102525079322e-31!GO:0031981;nuclear lumen;6.51755254555602e-31!GO:0006886;intracellular protein transport;1.03561854313961e-30!GO:0031966;mitochondrial membrane;1.08926188583789e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.20882088804945e-29!GO:0019866;organelle inner membrane;3.93803369974402e-28!GO:0016071;mRNA metabolic process;5.44988105991537e-28!GO:0012505;endomembrane system;1.53446958463546e-27!GO:0043283;biopolymer metabolic process;3.19990869231375e-27!GO:0005783;endoplasmic reticulum;5.76159664456996e-27!GO:0005743;mitochondrial inner membrane;1.09629311898223e-26!GO:0065003;macromolecular complex assembly;5.67806392485987e-26!GO:0008380;RNA splicing;2.20090855234069e-25!GO:0051649;establishment of cellular localization;2.90768561699289e-24!GO:0044445;cytosolic part;5.26549872314936e-24!GO:0051641;cellular localization;5.73481861424882e-24!GO:0006119;oxidative phosphorylation;1.1499512996881e-23!GO:0006397;mRNA processing;4.0882107204045e-23!GO:0005794;Golgi apparatus;5.95436628276411e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.47398927801145e-23!GO:0006996;organelle organization and biogenesis;6.92414432207439e-23!GO:0022607;cellular component assembly;8.19198960438435e-23!GO:0010467;gene expression;1.6718219580104e-22!GO:0048770;pigment granule;5.72325684926503e-21!GO:0042470;melanosome;5.72325684926503e-21!GO:0044432;endoplasmic reticulum part;1.59222075821055e-20!GO:0000166;nucleotide binding;2.79488207712245e-20!GO:0044455;mitochondrial membrane part;3.06456331830499e-20!GO:0006457;protein folding;4.1608201127031e-20!GO:0043228;non-membrane-bound organelle;4.31751636295175e-20!GO:0043232;intracellular non-membrane-bound organelle;4.31751636295175e-20!GO:0015934;large ribosomal subunit;9.41311305634576e-20!GO:0015935;small ribosomal subunit;2.77892730313499e-19!GO:0005654;nucleoplasm;3.5770219891932e-19!GO:0016462;pyrophosphatase activity;1.2926418107455e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42003405422215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19468528850945e-18!GO:0031980;mitochondrial lumen;2.6665077085344e-18!GO:0005759;mitochondrial matrix;2.6665077085344e-18!GO:0017111;nucleoside-triphosphatase activity;7.41261530689443e-18!GO:0005746;mitochondrial respiratory chain;1.11398488373047e-17!GO:0051186;cofactor metabolic process;1.53099202920845e-17!GO:0005681;spliceosome;1.670136938355e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.98420714232791e-17!GO:0016874;ligase activity;7.22874946683944e-17!GO:0048193;Golgi vesicle transport;9.63512438523691e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03022660507101e-16!GO:0016192;vesicle-mediated transport;1.45149277092281e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.98335085911538e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.40025517756099e-16!GO:0019941;modification-dependent protein catabolic process;6.29673450188707e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.29673450188707e-16!GO:0044265;cellular macromolecule catabolic process;6.75295969858563e-16!GO:0022618;protein-RNA complex assembly;6.75295969858563e-16!GO:0006512;ubiquitin cycle;7.57320574780683e-16!GO:0044257;cellular protein catabolic process;7.79793763484439e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.31571126351336e-16!GO:0003954;NADH dehydrogenase activity;9.31571126351336e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.31571126351336e-16!GO:0044451;nucleoplasm part;1.01732112128144e-15!GO:0044248;cellular catabolic process;1.13402039105298e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.17305406831744e-15!GO:0043285;biopolymer catabolic process;2.31541005649863e-15!GO:0043412;biopolymer modification;2.33926543712462e-15!GO:0032553;ribonucleotide binding;2.6707491778932e-15!GO:0032555;purine ribonucleotide binding;2.6707491778932e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.6707491778932e-15!GO:0017076;purine nucleotide binding;4.15945254587473e-15!GO:0006605;protein targeting;8.16280572612436e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.56406534667768e-15!GO:0030163;protein catabolic process;1.59663680067184e-14!GO:0006464;protein modification process;2.0571746964265e-14!GO:0051082;unfolded protein binding;2.35184623904087e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.75955379320849e-14!GO:0009057;macromolecule catabolic process;2.80232045620741e-14!GO:0005789;endoplasmic reticulum membrane;2.81802649314954e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0042773;ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.66791259722223e-14!GO:0045271;respiratory chain complex I;6.66791259722223e-14!GO:0005747;mitochondrial respiratory chain complex I;6.66791259722223e-14!GO:0008135;translation factor activity, nucleic acid binding;7.11957918617296e-14!GO:0006732;coenzyme metabolic process;7.5421183203317e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.02177492752244e-14!GO:0008134;transcription factor binding;1.18711708533191e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.05423908257202e-13!GO:0005761;mitochondrial ribosome;4.68490811079143e-13!GO:0000313;organellar ribosome;4.68490811079143e-13!GO:0005730;nucleolus;9.98499115226796e-13!GO:0005793;ER-Golgi intermediate compartment;2.95152799644609e-12!GO:0006259;DNA metabolic process;3.01238682967099e-12!GO:0007049;cell cycle;3.09881546018689e-12!GO:0012501;programmed cell death;3.36826049975005e-12!GO:0006915;apoptosis;1.02665554441464e-11!GO:0009055;electron carrier activity;1.44544112407772e-11!GO:0043687;post-translational protein modification;2.09930877096367e-11!GO:0005524;ATP binding;2.22598629147533e-11!GO:0032559;adenyl ribonucleotide binding;2.44348793249423e-11!GO:0005635;nuclear envelope;3.19512363482253e-11!GO:0003743;translation initiation factor activity;3.92173141034828e-11!GO:0030554;adenyl nucleotide binding;4.763728785028e-11!GO:0031965;nuclear membrane;9.54711260514951e-11!GO:0008219;cell death;1.22207073067899e-10!GO:0016265;death;1.22207073067899e-10!GO:0009259;ribonucleotide metabolic process;1.27862747414137e-10!GO:0005768;endosome;1.27862747414137e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.94722899453379e-10!GO:0006413;translational initiation;1.97884965638414e-10!GO:0044431;Golgi apparatus part;2.37473559901892e-10!GO:0006163;purine nucleotide metabolic process;4.61029886141927e-10!GO:0009150;purine ribonucleotide metabolic process;5.34844849630075e-10!GO:0008565;protein transporter activity;5.96704680768142e-10!GO:0009056;catabolic process;7.79858280659385e-10!GO:0008639;small protein conjugating enzyme activity;7.85521230953618e-10!GO:0006913;nucleocytoplasmic transport;9.56095883405195e-10!GO:0019787;small conjugating protein ligase activity;9.7615339863583e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15138068391267e-09!GO:0000375;RNA splicing, via transesterification reactions;1.15138068391267e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15138068391267e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17541914089407e-09!GO:0006461;protein complex assembly;1.53758682965939e-09!GO:0004842;ubiquitin-protein ligase activity;1.55537551730014e-09!GO:0003924;GTPase activity;1.61108146533651e-09!GO:0051169;nuclear transport;1.99559090062521e-09!GO:0009260;ribonucleotide biosynthetic process;2.02881301115004e-09!GO:0006164;purine nucleotide biosynthetic process;2.16671330289217e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.41039975825203e-09!GO:0016491;oxidoreductase activity;2.4430640068531e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.50045373572711e-09!GO:0006446;regulation of translational initiation;2.80801231211319e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.08863186570543e-09!GO:0009141;nucleoside triphosphate metabolic process;3.62993788283228e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.74252369209351e-09!GO:0051188;cofactor biosynthetic process;4.00637511749904e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0044453;nuclear membrane part;4.58145639777806e-09!GO:0015986;ATP synthesis coupled proton transport;5.02984754179192e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.02984754179192e-09!GO:0009060;aerobic respiration;5.30760430117638e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0005788;endoplasmic reticulum lumen;8.01214856734265e-09!GO:0003712;transcription cofactor activity;8.01214856734265e-09!GO:0048523;negative regulation of cellular process;8.06381281970312e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0016604;nuclear body;1.09249021716004e-08!GO:0016740;transferase activity;1.09480640093824e-08!GO:0022402;cell cycle process;1.19449693373881e-08!GO:0030120;vesicle coat;1.21429595440952e-08!GO:0030662;coated vesicle membrane;1.21429595440952e-08!GO:0016881;acid-amino acid ligase activity;1.24292074202739e-08!GO:0045333;cellular respiration;1.33038726031661e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.46799143139421e-08!GO:0031988;membrane-bound vesicle;1.56346016377618e-08!GO:0019829;cation-transporting ATPase activity;1.8975840505158e-08!GO:0003676;nucleic acid binding;1.98873547477608e-08!GO:0051246;regulation of protein metabolic process;2.07224668862412e-08!GO:0017038;protein import;2.47491892630001e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.54759699597259e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.71658073396637e-08!GO:0042254;ribosome biogenesis and assembly;2.89049047428734e-08!GO:0048475;coated membrane;3.06214518893521e-08!GO:0030117;membrane coat;3.06214518893521e-08!GO:0000139;Golgi membrane;4.84379321150833e-08!GO:0046034;ATP metabolic process;4.92925277838369e-08!GO:0042623;ATPase activity, coupled;5.23188014079459e-08!GO:0043067;regulation of programmed cell death;5.44572214001011e-08!GO:0042981;regulation of apoptosis;7.17553364918991e-08!GO:0006974;response to DNA damage stimulus;7.36436956912471e-08!GO:0016887;ATPase activity;7.81281804751622e-08!GO:0031982;vesicle;8.80018976435416e-08!GO:0006793;phosphorus metabolic process;8.97914921068107e-08!GO:0006796;phosphate metabolic process;8.97914921068107e-08!GO:0031410;cytoplasmic vesicle;9.61144144967609e-08!GO:0006754;ATP biosynthetic process;1.04089405187835e-07!GO:0006753;nucleoside phosphate metabolic process;1.04089405187835e-07!GO:0006399;tRNA metabolic process;1.7921772752686e-07!GO:0016310;phosphorylation;1.89016920604089e-07!GO:0008654;phospholipid biosynthetic process;2.2642279663101e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.4240454397334e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.66619029226743e-07!GO:0065002;intracellular protein transport across a membrane;2.77789070262937e-07!GO:0051726;regulation of cell cycle;3.25512324234649e-07!GO:0000278;mitotic cell cycle;3.34541970289948e-07!GO:0006099;tricarboxylic acid cycle;3.34541970289948e-07!GO:0046356;acetyl-CoA catabolic process;3.34541970289948e-07!GO:0009108;coenzyme biosynthetic process;3.34541970289948e-07!GO:0000074;regulation of progression through cell cycle;3.54934093710571e-07!GO:0051187;cofactor catabolic process;4.16796539211793e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.16796539211793e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.16796539211793e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.16796539211793e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.25539016862541e-07!GO:0048519;negative regulation of biological process;4.50895455953856e-07!GO:0006091;generation of precursor metabolites and energy;4.66474218603241e-07!GO:0009117;nucleotide metabolic process;4.66824178634235e-07!GO:0005773;vacuole;5.11084878622214e-07!GO:0007005;mitochondrion organization and biogenesis;5.33734286297703e-07!GO:0005643;nuclear pore;6.00057483874608e-07!GO:0004386;helicase activity;6.19513263633958e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.34875848120444e-07!GO:0043038;amino acid activation;6.45303410130432e-07!GO:0006418;tRNA aminoacylation for protein translation;6.45303410130432e-07!GO:0043039;tRNA aminoacylation;6.45303410130432e-07!GO:0005770;late endosome;6.96321001767798e-07!GO:0043069;negative regulation of programmed cell death;6.97745172210507e-07!GO:0016607;nuclear speck;7.07670688239725e-07!GO:0005798;Golgi-associated vesicle;7.61715722889495e-07!GO:0016787;hydrolase activity;7.81985382334429e-07!GO:0009109;coenzyme catabolic process;9.81765709036356e-07!GO:0044440;endosomal part;9.83083005936922e-07!GO:0010008;endosome membrane;9.83083005936922e-07!GO:0005525;GTP binding;1.11957618510248e-06!GO:0043066;negative regulation of apoptosis;1.23543647984025e-06!GO:0006752;group transfer coenzyme metabolic process;1.24096311920489e-06!GO:0006084;acetyl-CoA metabolic process;1.24475628516807e-06!GO:0008026;ATP-dependent helicase activity;1.36687763884745e-06!GO:0016853;isomerase activity;1.56088220194614e-06!GO:0045259;proton-transporting ATP synthase complex;1.95578147190599e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.24622540915233e-06!GO:0031252;leading edge;2.58309047355215e-06!GO:0046930;pore complex;2.62109374787856e-06!GO:0004298;threonine endopeptidase activity;2.87113015196074e-06!GO:0016070;RNA metabolic process;2.87640519834252e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.80207884990085e-06!GO:0008610;lipid biosynthetic process;4.28089234543356e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.32584097584451e-06!GO:0006916;anti-apoptosis;5.18729345332913e-06!GO:0032561;guanyl ribonucleotide binding;6.09898446729062e-06!GO:0019001;guanyl nucleotide binding;6.09898446729062e-06!GO:0051170;nuclear import;6.21215839053695e-06!GO:0009719;response to endogenous stimulus;7.46867590635276e-06!GO:0006403;RNA localization;7.75173950792009e-06!GO:0032446;protein modification by small protein conjugation;7.82817310312785e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.84593914444994e-06!GO:0030133;transport vesicle;7.87543954706316e-06!GO:0050657;nucleic acid transport;8.59591595682027e-06!GO:0051236;establishment of RNA localization;8.59591595682027e-06!GO:0050658;RNA transport;8.59591595682027e-06!GO:0019899;enzyme binding;8.80607641847023e-06!GO:0003714;transcription corepressor activity;8.8205392955235e-06!GO:0016567;protein ubiquitination;9.95973232311993e-06!GO:0000323;lytic vacuole;1.0308967815885e-05!GO:0005764;lysosome;1.0308967815885e-05!GO:0045454;cell redox homeostasis;1.11091930766055e-05!GO:0045786;negative regulation of progression through cell cycle;1.1486881363716e-05!GO:0000151;ubiquitin ligase complex;1.22502029308698e-05!GO:0006606;protein import into nucleus;1.2486954935704e-05!GO:0006281;DNA repair;1.34615202479032e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.3556443717901e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42933612250124e-05!GO:0051789;response to protein stimulus;1.51478526292192e-05!GO:0006986;response to unfolded protein;1.51478526292192e-05!GO:0005762;mitochondrial large ribosomal subunit;1.5169162872197e-05!GO:0000315;organellar large ribosomal subunit;1.5169162872197e-05!GO:0006613;cotranslational protein targeting to membrane;1.61022147499042e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.75179290062228e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.75955044221633e-05!GO:0043623;cellular protein complex assembly;1.78883883805468e-05!GO:0016859;cis-trans isomerase activity;1.80420745793115e-05!GO:0031968;organelle outer membrane;1.89501462808454e-05!GO:0006366;transcription from RNA polymerase II promoter;1.9087265219291e-05!GO:0007243;protein kinase cascade;2.12349406489266e-05!GO:0016126;sterol biosynthetic process;2.55547244851127e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.55547244851127e-05!GO:0019867;outer membrane;2.79584220641177e-05!GO:0050794;regulation of cellular process;2.84518290174102e-05!GO:0008361;regulation of cell size;2.98124006344725e-05!GO:0005769;early endosome;3.18865029277749e-05!GO:0006364;rRNA processing;3.75779851701479e-05!GO:0044262;cellular carbohydrate metabolic process;4.41895009708571e-05!GO:0030867;rough endoplasmic reticulum membrane;4.72155316112153e-05!GO:0005791;rough endoplasmic reticulum;5.19717089788968e-05!GO:0016049;cell growth;5.19717089788968e-05!GO:0019843;rRNA binding;5.71313686278681e-05!GO:0046467;membrane lipid biosynthetic process;6.60266106489385e-05!GO:0000245;spliceosome assembly;6.70624863060546e-05!GO:0006323;DNA packaging;7.15180420035836e-05!GO:0016072;rRNA metabolic process;7.75579284993906e-05!GO:0007264;small GTPase mediated signal transduction;8.69095777164498e-05!GO:0005741;mitochondrial outer membrane;8.9910491368791e-05!GO:0051276;chromosome organization and biogenesis;9.82799190955543e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000104094908101264!GO:0005905;coated pit;0.000116594278154634!GO:0033116;ER-Golgi intermediate compartment membrane;0.000118824254906007!GO:0006612;protein targeting to membrane;0.000128032088328822!GO:0001558;regulation of cell growth;0.00013056270669775!GO:0030029;actin filament-based process;0.000143666393607727!GO:0005048;signal sequence binding;0.000144585196782001!GO:0016779;nucleotidyltransferase activity;0.000148117230165612!GO:0051028;mRNA transport;0.000163844965453702!GO:0030659;cytoplasmic vesicle membrane;0.000163850473720998!GO:0022403;cell cycle phase;0.000175825529932492!GO:0015630;microtubule cytoskeleton;0.00018393507062772!GO:0016564;transcription repressor activity;0.000187835451573228!GO:0003724;RNA helicase activity;0.000198619271822141!GO:0046474;glycerophospholipid biosynthetic process;0.000198798270797058!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000221975739353!GO:0051329;interphase of mitotic cell cycle;0.00022425297279743!GO:0043566;structure-specific DNA binding;0.000228281096459065!GO:0051427;hormone receptor binding;0.00023507762975059!GO:0005667;transcription factor complex;0.000241702151866125!GO:0003697;single-stranded DNA binding;0.000242812134715356!GO:0005885;Arp2/3 protein complex;0.000256655406365984!GO:0048522;positive regulation of cellular process;0.000256692749207187!GO:0003713;transcription coactivator activity;0.000256692749207187!GO:0051301;cell division;0.000264557490500205!GO:0007010;cytoskeleton organization and biogenesis;0.000266247920395866!GO:0030663;COPI coated vesicle membrane;0.000296551956440154!GO:0030126;COPI vesicle coat;0.000296551956440154!GO:0065004;protein-DNA complex assembly;0.000315365104079963!GO:0004576;oligosaccharyl transferase activity;0.000328017645288205!GO:0006695;cholesterol biosynthetic process;0.000333164646263995!GO:0006082;organic acid metabolic process;0.000341490038536674!GO:0008250;oligosaccharyl transferase complex;0.000355895696828746!GO:0019752;carboxylic acid metabolic process;0.000360010797075507!GO:0009165;nucleotide biosynthetic process;0.000361913510560469!GO:0051325;interphase;0.000369320653287449!GO:0016568;chromatin modification;0.000373038499605646!GO:0016044;membrane organization and biogenesis;0.000376975746971839!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000386327049666168!GO:0008092;cytoskeletal protein binding;0.000394947990172872!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000427593756059608!GO:0043021;ribonucleoprotein binding;0.000428856932680953!GO:0035257;nuclear hormone receptor binding;0.000453896740546432!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000467595616809629!GO:0030176;integral to endoplasmic reticulum membrane;0.000491646390121907!GO:0044433;cytoplasmic vesicle part;0.000520290441609238!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000541938370887503!GO:0005813;centrosome;0.000551360754991407!GO:0030137;COPI-coated vesicle;0.000555697856799983!GO:0018196;peptidyl-asparagine modification;0.000601770259025549!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000601770259025549!GO:0006260;DNA replication;0.000614174519275914!GO:0031324;negative regulation of cellular metabolic process;0.000628319631480289!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000696162079158058!GO:0000087;M phase of mitotic cell cycle;0.000735777474444031!GO:0050789;regulation of biological process;0.00076052915620821!GO:0007067;mitosis;0.000770943652575563!GO:0044255;cellular lipid metabolic process;0.000787603693167726!GO:0006891;intra-Golgi vesicle-mediated transport;0.000792404321152069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000839283496219845!GO:0043681;protein import into mitochondrion;0.000846507403722433!GO:0051920;peroxiredoxin activity;0.000847796050984855!GO:0016197;endosome transport;0.000938886948970116!GO:0000314;organellar small ribosomal subunit;0.000962408124555684!GO:0005763;mitochondrial small ribosomal subunit;0.000962408124555684!GO:0030658;transport vesicle membrane;0.00113574179581843!GO:0008047;enzyme activator activity;0.00120644489525809!GO:0004177;aminopeptidase activity;0.00122001113436559!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00122066741297444!GO:0015399;primary active transmembrane transporter activity;0.00122066741297444!GO:0012506;vesicle membrane;0.00125385426387375!GO:0051168;nuclear export;0.00129785712887634!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134165558021243!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134165558021243!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134165558021243!GO:0031072;heat shock protein binding;0.00142615852195727!GO:0015992;proton transport;0.00150063373890155!GO:0045045;secretory pathway;0.00150698821383039!GO:0006818;hydrogen transport;0.00150994945104801!GO:0046489;phosphoinositide biosynthetic process;0.00150994945104801!GO:0006626;protein targeting to mitochondrion;0.00153167155109663!GO:0005815;microtubule organizing center;0.00157812646068887!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00158190199087718!GO:0016563;transcription activator activity;0.00164887084267795!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00169152852507371!GO:0007050;cell cycle arrest;0.00174089757748513!GO:0022890;inorganic cation transmembrane transporter activity;0.00178106413952818!GO:0003729;mRNA binding;0.00190858276150101!GO:0006979;response to oxidative stress;0.00190858276150101!GO:0006643;membrane lipid metabolic process;0.00199182118340442!GO:0030132;clathrin coat of coated pit;0.00200170056783137!GO:0031902;late endosome membrane;0.00207649250399592!GO:0000059;protein import into nucleus, docking;0.00207898996036228!GO:0035258;steroid hormone receptor binding;0.00212612696820259!GO:0003899;DNA-directed RNA polymerase activity;0.00213661545493105!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00219265504406778!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00226433672594791!GO:0015002;heme-copper terminal oxidase activity;0.00226433672594791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00226433672594791!GO:0004129;cytochrome-c oxidase activity;0.00226433672594791!GO:0046483;heterocycle metabolic process;0.00229905021076043!GO:0006650;glycerophospholipid metabolic process;0.0023201157476321!GO:0030027;lamellipodium;0.00235517607933618!GO:0001726;ruffle;0.00237166836736595!GO:0030134;ER to Golgi transport vesicle;0.0024121644480679!GO:0006333;chromatin assembly or disassembly;0.00242905334225139!GO:0030118;clathrin coat;0.00246630741193471!GO:0030880;RNA polymerase complex;0.0025048836432345!GO:0006839;mitochondrial transport;0.00250660825311329!GO:0065009;regulation of a molecular function;0.00250660825311329!GO:0043284;biopolymer biosynthetic process;0.00252018509073761!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253762629946295!GO:0009892;negative regulation of metabolic process;0.00254331421816773!GO:0006892;post-Golgi vesicle-mediated transport;0.00261039941847661!GO:0005694;chromosome;0.00261431313217269!GO:0009967;positive regulation of signal transduction;0.00261431313217269!GO:0048471;perinuclear region of cytoplasm;0.00285836610404815!GO:0008186;RNA-dependent ATPase activity;0.00286336278395524!GO:0006383;transcription from RNA polymerase III promoter;0.00292981345508388!GO:0051252;regulation of RNA metabolic process;0.0029756566221241!GO:0006414;translational elongation;0.0029756566221241!GO:0005774;vacuolar membrane;0.0029756566221241!GO:0007040;lysosome organization and biogenesis;0.00310724573314417!GO:0048500;signal recognition particle;0.00324106648823585!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324715682977192!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324715682977192!GO:0004674;protein serine/threonine kinase activity;0.00342347764272492!GO:0016125;sterol metabolic process;0.00350251724191576!GO:0048487;beta-tubulin binding;0.00351434339516184!GO:0030660;Golgi-associated vesicle membrane;0.00354833895463786!GO:0030127;COPII vesicle coat;0.00369398571384842!GO:0012507;ER to Golgi transport vesicle membrane;0.00369398571384842!GO:0007033;vacuole organization and biogenesis;0.00384874462699054!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00449381870319195!GO:0042802;identical protein binding;0.00454902273375192!GO:0007006;mitochondrial membrane organization and biogenesis;0.00463917664926671!GO:0040008;regulation of growth;0.00464332395490572!GO:0051128;regulation of cellular component organization and biogenesis;0.00507230394556879!GO:0043488;regulation of mRNA stability;0.00509414112156218!GO:0043487;regulation of RNA stability;0.00509414112156218!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000428;DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000785;chromatin;0.00522081541276563!GO:0030145;manganese ion binding;0.00525180172462162!GO:0006520;amino acid metabolic process;0.00548241726022669!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00550507177348378!GO:0006672;ceramide metabolic process;0.00554637914896173!GO:0044427;chromosomal part;0.00564255158635331!GO:0008139;nuclear localization sequence binding;0.00569044450371516!GO:0051287;NAD binding;0.00572780482356176!GO:0006807;nitrogen compound metabolic process;0.00576712262843154!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00607869705733677!GO:0043492;ATPase activity, coupled to movement of substances;0.00608854768062715!GO:0006629;lipid metabolic process;0.00610266271592718!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00662359730388132!GO:0045047;protein targeting to ER;0.00662359730388132!GO:0005096;GTPase activator activity;0.00669054946627019!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00669054946627019!GO:0046519;sphingoid metabolic process;0.00686448259135769!GO:0004004;ATP-dependent RNA helicase activity;0.006918220893033!GO:0006595;polyamine metabolic process;0.00704529359484316!GO:0031301;integral to organelle membrane;0.00711084027015541!GO:0008632;apoptotic program;0.00721101518959408!GO:0006118;electron transport;0.00745312271720572!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00766299648856102!GO:0006778;porphyrin metabolic process;0.00773271321197465!GO:0033013;tetrapyrrole metabolic process;0.00773271321197465!GO:0017166;vinculin binding;0.00790343299728464!GO:0048468;cell development;0.00791050915636975!GO:0044437;vacuolar part;0.00796944760147739!GO:0015631;tubulin binding;0.00807082541210312!GO:0048518;positive regulation of biological process;0.00820614522893473!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00824878459511527!GO:0006402;mRNA catabolic process;0.00825869765070834!GO:0006509;membrane protein ectodomain proteolysis;0.00846896395057264!GO:0033619;membrane protein proteolysis;0.00846896395057264!GO:0006790;sulfur metabolic process;0.00857613378479567!GO:0008286;insulin receptor signaling pathway;0.00859599467081803!GO:0000082;G1/S transition of mitotic cell cycle;0.00864675603954731!GO:0006644;phospholipid metabolic process;0.00876363831569147!GO:0030119;AP-type membrane coat adaptor complex;0.00878767986485301!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0088076530168599!GO:0032940;secretion by cell;0.0088076530168599!GO:0006066;alcohol metabolic process;0.00892060203953862!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00900752165963371!GO:0016860;intramolecular oxidoreductase activity;0.0090646200286398!GO:0008180;signalosome;0.00921411287833477!GO:0006740;NADPH regeneration;0.00923828023983111!GO:0006098;pentose-phosphate shunt;0.00923828023983111!GO:0005869;dynactin complex;0.0094328561292017!GO:0045792;negative regulation of cell size;0.00962254372262898!GO:0005100;Rho GTPase activator activity;0.00969144889941297!GO:0050662;coenzyme binding;0.00970758725782387!GO:0016363;nuclear matrix;0.00992135802984622!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0103302154466971!GO:0005765;lysosomal membrane;0.0108654168453473!GO:0043068;positive regulation of programmed cell death;0.0110024658048046!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0111197790727197!GO:0031543;peptidyl-proline dioxygenase activity;0.0111467293228444!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0111572857183259!GO:0007265;Ras protein signal transduction;0.0111717234630897!GO:0043065;positive regulation of apoptosis;0.0112783679457055!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0112783679457055!GO:0008312;7S RNA binding;0.0112944293981732!GO:0019798;procollagen-proline dioxygenase activity;0.0114377430382134!GO:0005099;Ras GTPase activator activity;0.0114696840248821!GO:0016408;C-acyltransferase activity;0.0116408291424769!GO:0007034;vacuolar transport;0.0116445015961128!GO:0005862;muscle thin filament tropomyosin;0.0119137416945491!GO:0009112;nucleobase metabolic process;0.0119137416945491!GO:0031901;early endosome membrane;0.012174069862012!GO:0030308;negative regulation of cell growth;0.012174069862012!GO:0009308;amine metabolic process;0.012174069862012!GO:0050811;GABA receptor binding;0.0122092571454222!GO:0030125;clathrin vesicle coat;0.0122226421405398!GO:0030665;clathrin coated vesicle membrane;0.0122226421405398!GO:0051101;regulation of DNA binding;0.0123545652347969!GO:0030384;phosphoinositide metabolic process;0.0123895167820756!GO:0031625;ubiquitin protein ligase binding;0.0126107156815741!GO:0031418;L-ascorbic acid binding;0.0127395855269371!GO:0016301;kinase activity;0.0128069892768419!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130640239575739!GO:0007030;Golgi organization and biogenesis;0.0131097330182959!GO:0006497;protein amino acid lipidation;0.0134693940720204!GO:0050681;androgen receptor binding;0.0137010680121678!GO:0030521;androgen receptor signaling pathway;0.0137264745054831!GO:0042158;lipoprotein biosynthetic process;0.0143681169239308!GO:0033559;unsaturated fatty acid metabolic process;0.0144317130064135!GO:0006636;unsaturated fatty acid biosynthetic process;0.0144317130064135!GO:0005684;U2-dependent spliceosome;0.0145353113952651!GO:0043022;ribosome binding;0.0145897146537732!GO:0033673;negative regulation of kinase activity;0.0149125973984407!GO:0006469;negative regulation of protein kinase activity;0.0149125973984407!GO:0016481;negative regulation of transcription;0.0149125973984407!GO:0030131;clathrin adaptor complex;0.0151010534143126!GO:0042168;heme metabolic process;0.0153816167873791!GO:0003690;double-stranded DNA binding;0.0155004236434602!GO:0005975;carbohydrate metabolic process;0.0156345712953363!GO:0051087;chaperone binding;0.0157795874007664!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0031529;ruffle organization and biogenesis;0.0171157025185688!GO:0050790;regulation of catalytic activity;0.0172658519812674!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0175456251825849!GO:0051540;metal cluster binding;0.0175592189584987!GO:0051536;iron-sulfur cluster binding;0.0175592189584987!GO:0006352;transcription initiation;0.0183462351204489!GO:0030518;steroid hormone receptor signaling pathway;0.0185109303950936!GO:0051348;negative regulation of transferase activity;0.018655105667003!GO:0003746;translation elongation factor activity;0.0191412888941853!GO:0000339;RNA cap binding;0.019255251862764!GO:0005832;chaperonin-containing T-complex;0.0194849206878204!GO:0035035;histone acetyltransferase binding;0.019499704495322!GO:0003711;transcription elongation regulator activity;0.019499704495322!GO:0006897;endocytosis;0.0195305864371203!GO:0010324;membrane invagination;0.0195305864371203!GO:0000279;M phase;0.0196971374061704!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0201886947344714!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0201893394641859!GO:0003779;actin binding;0.0201893394641859!GO:0016272;prefoldin complex;0.0202297983714819!GO:0005586;collagen type III;0.0203517621541049!GO:0030041;actin filament polymerization;0.0204826883360852!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0205353786326552!GO:0006506;GPI anchor biosynthetic process;0.0207804264790853!GO:0006779;porphyrin biosynthetic process;0.0214403392569434!GO:0033014;tetrapyrrole biosynthetic process;0.0214403392569434!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0215723429652837!GO:0005801;cis-Golgi network;0.0219222159470418!GO:0007242;intracellular signaling cascade;0.0230335782300696!GO:0022406;membrane docking;0.0233639845176915!GO:0048278;vesicle docking;0.0233639845176915!GO:0000049;tRNA binding;0.0233717783876606!GO:0005637;nuclear inner membrane;0.0235690058182873!GO:0008154;actin polymerization and/or depolymerization;0.0236773821395313!GO:0051098;regulation of binding;0.0237561914846689!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0247377909922541!GO:0006334;nucleosome assembly;0.0249102696083419!GO:0006611;protein export from nucleus;0.0253317090090129!GO:0005938;cell cortex;0.0254311172312808!GO:0006739;NADP metabolic process;0.0262274953294565!GO:0006505;GPI anchor metabolic process;0.0268282793067125!GO:0015036;disulfide oxidoreductase activity;0.026923740645519!GO:0030833;regulation of actin filament polymerization;0.026923740645519!GO:0006720;isoprenoid metabolic process;0.0272439168688728!GO:0006749;glutathione metabolic process;0.0273007067646453!GO:0008033;tRNA processing;0.0275324564804773!GO:0003756;protein disulfide isomerase activity;0.0275324564804773!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0275324564804773!GO:0006007;glucose catabolic process;0.0282901377782645!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0286584581149127!GO:0033043;regulation of organelle organization and biogenesis;0.0286584581149127!GO:0008484;sulfuric ester hydrolase activity;0.029234001611565!GO:0000209;protein polyubiquitination;0.0296054042593344!GO:0051336;regulation of hydrolase activity;0.0296928302940295!GO:0031970;organelle envelope lumen;0.0298429670719222!GO:0005083;small GTPase regulator activity;0.0299724525347185!GO:0003684;damaged DNA binding;0.0306980924454986!GO:0006401;RNA catabolic process;0.0310098299001769!GO:0006904;vesicle docking during exocytosis;0.031851947066815!GO:0006519;amino acid and derivative metabolic process;0.0322553502434524!GO:0007041;lysosomal transport;0.0329865458929432!GO:0008538;proteasome activator activity;0.0330858198067383!GO:0018193;peptidyl-amino acid modification;0.0331661909709672!GO:0016584;nucleosome positioning;0.0338326565089519!GO:0043087;regulation of GTPase activity;0.0338326565089519!GO:0031300;intrinsic to organelle membrane;0.0340996317222296!GO:0008203;cholesterol metabolic process;0.0343795007310639!GO:0000096;sulfur amino acid metabolic process;0.0344120973475816!GO:0006607;NLS-bearing substrate import into nucleus;0.0346090052233858!GO:0030032;lamellipodium biogenesis;0.0348369341238667!GO:0031371;ubiquitin conjugating enzyme complex;0.035220665986953!GO:0006950;response to stress;0.0354446254052216!GO:0030508;thiol-disulfide exchange intermediate activity;0.0364869365241085!GO:0005819;spindle;0.0365475921555187!GO:0030149;sphingolipid catabolic process;0.0365475921555187!GO:0006767;water-soluble vitamin metabolic process;0.0366298626446332!GO:0006769;nicotinamide metabolic process;0.0366373767710421!GO:0065007;biological regulation;0.0371496901133747!GO:0006417;regulation of translation;0.0375432305374876!GO:0030911;TPR domain binding;0.038241018548984!GO:0031497;chromatin assembly;0.0387775354971031!GO:0045936;negative regulation of phosphate metabolic process;0.0395952490890256!GO:0022408;negative regulation of cell-cell adhesion;0.0396261463724761!GO:0009116;nucleoside metabolic process;0.0404525322595494!GO:0008637;apoptotic mitochondrial changes;0.0404525322595494!GO:0006458;'de novo' protein folding;0.0405436827335544!GO:0051084;'de novo' posttranslational protein folding;0.0405436827335544!GO:0006144;purine base metabolic process;0.0406009714260639!GO:0006405;RNA export from nucleus;0.0408390730781684!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0004667;prostaglandin-D synthase activity;0.0418212255316328!GO:0050802;circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0022410;circadian sleep/wake cycle process;0.0418212255316328!GO:0042749;regulation of circadian sleep/wake cycle;0.0418212255316328!GO:0005777;peroxisome;0.0419553704966658!GO:0042579;microbody;0.0419553704966658!GO:0006783;heme biosynthetic process;0.042542294988251!GO:0005092;GDP-dissociation inhibitor activity;0.0426419444155847!GO:0048144;fibroblast proliferation;0.0426419444155847!GO:0048145;regulation of fibroblast proliferation;0.0426419444155847!GO:0032507;maintenance of cellular protein localization;0.0428927833442511!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0429714493906967!GO:0000287;magnesium ion binding;0.0429714493906967!GO:0001952;regulation of cell-matrix adhesion;0.0441137883985188!GO:0030031;cell projection biogenesis;0.0443970983483883!GO:0030503;regulation of cell redox homeostasis;0.0446261638253763!GO:0008234;cysteine-type peptidase activity;0.0446261638253763!GO:0005669;transcription factor TFIID complex;0.04492467849925!GO:0005874;microtubule;0.04492467849925!GO:0009081;branched chain family amino acid metabolic process;0.0451700618926784!GO:0006354;RNA elongation;0.0453589595719379!GO:0032906;transforming growth factor-beta2 production;0.0454447051797866!GO:0032909;regulation of transforming growth factor-beta2 production;0.0454447051797866!GO:0044452;nucleolar part;0.0457302086037287!GO:0045926;negative regulation of growth;0.0457312469516925!GO:0006984;ER-nuclear signaling pathway;0.0457372206809516!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0463179305319199!GO:0006518;peptide metabolic process;0.0466445379998019!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0466540185143445!GO:0001725;stress fiber;0.0467289757895987!GO:0032432;actin filament bundle;0.0467289757895987!GO:0006289;nucleotide-excision repair;0.0468816691704497!GO:0005581;collagen;0.0476938555418379!GO:0004563;beta-N-acetylhexosaminidase activity;0.0480626423833497!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0483551080092194!GO:0048037;cofactor binding;0.0483746850798229!GO:0006733;oxidoreduction coenzyme metabolic process;0.0484484755478293!GO:0006302;double-strand break repair;0.048919363248227!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0490905556596608!GO:0005758;mitochondrial intermembrane space;0.049259182811206!GO:0045334;clathrin-coated endocytic vesicle;0.049455617692365!GO:0032984;macromolecular complex disassembly;0.049455617692365!GO:0007021;tubulin folding;0.0497756558653948!GO:0015248;sterol transporter activity;0.0497756558653948!GO:0050178;phenylpyruvate tautomerase activity;0.0498273227654315 | |||
|sample_id=11391 | |sample_id=11391 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495 | |top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11391-118C5;search_select_hide=table117:FF:11391-118C5 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Smooth Muscle Cells - Brain Vascular, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12004 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12004
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12004
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.32 |
| 10 | 10 | 0.221 |
| 100 | 100 | 0.701 |
| 101 | 101 | 0.452 |
| 102 | 102 | 0.0619 |
| 103 | 103 | 0.628 |
| 104 | 104 | 0.575 |
| 105 | 105 | 0.158 |
| 106 | 106 | 0.451 |
| 107 | 107 | 0.128 |
| 108 | 108 | 0.365 |
| 109 | 109 | 0.619 |
| 11 | 11 | 0.992 |
| 110 | 110 | 0.895 |
| 111 | 111 | 0.129 |
| 112 | 112 | 0.349 |
| 113 | 113 | 0.649 |
| 114 | 114 | 0.654 |
| 115 | 115 | 0.145 |
| 116 | 116 | 0.033 |
| 117 | 117 | 0.54 |
| 118 | 118 | 0.299 |
| 119 | 119 | 0.742 |
| 12 | 12 | 0.189 |
| 120 | 120 | 0.363 |
| 121 | 121 | 0.67 |
| 122 | 122 | 0.0175 |
| 123 | 123 | 0.0102 |
| 124 | 124 | 0.289 |
| 125 | 125 | 0.0584 |
| 126 | 126 | 0.976 |
| 127 | 127 | 0.758 |
| 128 | 128 | 0.22 |
| 129 | 129 | 0.334 |
| 13 | 13 | 0.321 |
| 130 | 130 | 0.446 |
| 131 | 131 | 0.935 |
| 132 | 132 | 0.445 |
| 133 | 133 | 0.494 |
| 134 | 134 | 0.439 |
| 135 | 135 | 0.254 |
| 136 | 136 | 0.234 |
| 137 | 137 | 0.0261 |
| 138 | 138 | 0.891 |
| 139 | 139 | 0.512 |
| 14 | 14 | 0.209 |
| 140 | 140 | 0.338 |
| 141 | 141 | 0.128 |
| 142 | 142 | 0.743 |
| 143 | 143 | 0.46 |
| 144 | 144 | 0.51 |
| 145 | 145 | 0.394 |
| 146 | 146 | 0.799 |
| 147 | 147 | 0.109 |
| 148 | 148 | 0.64 |
| 149 | 149 | 0.315 |
| 15 | 15 | 0.544 |
| 150 | 150 | 0.413 |
| 151 | 151 | 0.358 |
| 152 | 152 | 0.0286 |
| 153 | 153 | 0.568 |
| 154 | 154 | 0.415 |
| 155 | 155 | 0.00645 |
| 156 | 156 | 0.3 |
| 157 | 157 | 0.384 |
| 158 | 158 | 0.0114 |
| 159 | 159 | 0.405 |
| 16 | 16 | 0.077 |
| 160 | 160 | 0.781 |
| 161 | 161 | 0.806 |
| 162 | 162 | 0.358 |
| 163 | 163 | 0.131 |
| 164 | 164 | 0.299 |
| 165 | 165 | 0.0491 |
| 166 | 166 | 0.231 |
| 167 | 167 | 0.511 |
| 168 | 168 | 0.103 |
| 169 | 169 | 0.225 |
| 17 | 17 | 0.86 |
| 18 | 18 | 0.958 |
| 19 | 19 | 0.253 |
| 2 | 2 | 0.431 |
| 20 | 20 | 0.34 |
| 21 | 21 | 0.88 |
| 22 | 22 | 0.249 |
| 23 | 23 | 0.37 |
| 24 | 24 | 0.46 |
| 25 | 25 | 0.0384 |
| 26 | 26 | 0.312 |
| 27 | 27 | 0.505 |
| 28 | 28 | 0.194 |
| 29 | 29 | 0.779 |
| 3 | 3 | 0.948 |
| 30 | 30 | 0.38 |
| 31 | 31 | 0.366 |
| 32 | 32 | 2.96932e-18 |
| 33 | 33 | 0.849 |
| 34 | 34 | 0.513 |
| 35 | 35 | 0.145 |
| 36 | 36 | 0.0378 |
| 37 | 37 | 0.684 |
| 38 | 38 | 0.372 |
| 39 | 39 | 0.586 |
| 4 | 4 | 0.0694 |
| 40 | 40 | 0.286 |
| 41 | 41 | 0.0824 |
| 42 | 42 | 0.353 |
| 43 | 43 | 0.56 |
| 44 | 44 | 0.282 |
| 45 | 45 | 0.94 |
| 46 | 46 | 0.718 |
| 47 | 47 | 0.728 |
| 48 | 48 | 0.852 |
| 49 | 49 | 0.103 |
| 5 | 5 | 0.614 |
| 50 | 50 | 0.834 |
| 51 | 51 | 0.521 |
| 52 | 52 | 0.723 |
| 53 | 53 | 0.152 |
| 54 | 54 | 0.66 |
| 55 | 55 | 0.245 |
| 56 | 56 | 0.788 |
| 57 | 57 | 0.896 |
| 58 | 58 | 0.0246 |
| 59 | 59 | 0.699 |
| 6 | 6 | 0.569 |
| 60 | 60 | 0.462 |
| 61 | 61 | 0.938 |
| 62 | 62 | 0.0655 |
| 63 | 63 | 0.938 |
| 64 | 64 | 0.542 |
| 65 | 65 | 0.831 |
| 66 | 66 | 0.904 |
| 67 | 67 | 0.273 |
| 68 | 68 | 0.864 |
| 69 | 69 | 0.667 |
| 7 | 7 | 0.215 |
| 70 | 70 | 0.322 |
| 71 | 71 | 0.505 |
| 72 | 72 | 0.975 |
| 73 | 73 | 0.0243 |
| 74 | 74 | 0.834 |
| 75 | 75 | 0.116 |
| 76 | 76 | 0.494 |
| 77 | 77 | 0.245 |
| 78 | 78 | 0.961 |
| 79 | 79 | 0.0801 |
| 8 | 8 | 0.373 |
| 80 | 80 | 0.135 |
| 81 | 81 | 0.868 |
| 82 | 82 | 0.813 |
| 83 | 83 | 0.92 |
| 84 | 84 | 0.855 |
| 85 | 85 | 0.458 |
| 86 | 86 | 0.964 |
| 87 | 87 | 0.0272 |
| 88 | 88 | 0.997 |
| 89 | 89 | 0.693 |
| 9 | 9 | 0.791 |
| 90 | 90 | 0.38 |
| 91 | 91 | 0.776 |
| 92 | 92 | 0.158 |
| 93 | 93 | 0.118 |
| 94 | 94 | 0.619 |
| 95 | 95 | 0.442 |
| 96 | 96 | 0.389 |
| 97 | 97 | 0.418 |
| 98 | 98 | 0.0872 |
| 99 | 99 | 2.03874e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12004
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000170 human smooth muscle cell of the brain vasculature sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
