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{{f5samples
{{f5samples
|id=FF:11433-118H2
|DRA_sample_Accession=CAGE@SAMD00004781
|name=Smooth Muscle Cells - Brachiocephalic, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004781
|sample_id=11433
|accession_numbers=CAGE;DRX008474;DRR009346;DRZ000771;DRZ002156;DRZ012121;DRZ013506
|rna_tube_id=118H2
|accession_numbers_RNASeq=sRNA-Seq;DRX036997;DRR041363;DRZ007005
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=H2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1851
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=brachiocephalic artery
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12043,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10002,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002589
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001529,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007204,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000169
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.61!39.65!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.56!35.35!SOX17;;chr8:106330656..106330684,+!p1@ZFPM2!1.36!56.68!ZFPM2;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.25!16.89!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.62!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.22!GATA6;;chr8:106330696..106330719,+!p2@ZFPM2!1.16!17.03!ZFPM2;;chr6:126240380..126240430,+!p2@NCOA7!1.15!34.35!NCOA7;;chr18:19749386..19749404,+!p2@GATA6!1.07!15.60!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.07!10.88!HAND2;;chr7:1577899..1577943,+!p3@MAFK!1.06!10.59!MAFK;;chr12:80085061..80085119,-!p6@PAWR!1.04!15.89!PAWR;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.73!HEY2;;chr21:38071430..38071456,+!p1@SIM2!1.01!9.30!SIM2;;chr9:35732647..35732678,+!p2@CREB3!0.98!49.23!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.98!9.59!NCOA7;;chr11:65686732..65686756,+!p2@DRAP1!0.97!36.21!DRAP1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.95!77.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.95!10.30!NCOA7;;chr12:66218904..66218913,+!p11@HMGA2!0.91!7.16!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.91!7.16!RARB;;chr9:35732514..35732530,+!p5@CREB3!0.88!9.59!CREB3;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.16!TFAP2A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!25.91!ZBTB38;;chr12:66218598..66218645,+!p2@HMGA2!0.85!30.06!HMGA2;;chr3:25469815..25469866,+!p3@RARB!0.85!6.15!RARB;;chr8:106330543..106330554,+!p4@ZFPM2!0.85!6.01!ZFPM2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.87!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.48!DRAP1;;chr15:67458861..67458879,+!p17@SMAD3!0.81!5.44!SMAD3;;chr12:80085120..80085156,-!p14@PAWR!0.79!5.15!PAWR;;chr1:151032782..151032801,+!p4@MLLT11!0.77!10.45!MLLT11;;chr11:65687882..65687902,+!p10@DRAP1!0.77!7.01!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.75!5.44!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.75!5.30!MSC;;chr2:66662281..66662308,+!p1@MEIS1!0.74!17.17!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.72!15.46!NCOA7;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.54!CREB3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.87!MSC;;chr17:46132044..46132080,+!p4@NFE2L1!0.71!4.15!NFE2L1;;chr8:72756267..72756296,-!p4@MSC!0.70!6.15!MSC;;chr12:80084137..80084165,-!p10@PAWR!0.70!5.44!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.15!MLLT11;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.01!NCOA7;;chr11:65687158..65687216,+!p4@DRAP1!0.69!25.48!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.44!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.68!210.11!ENO1;;chr3:178789522..178789564,-!p2@ZMAT3!0.68!31.63!ZMAT3;;chr1:151032860..151032918,+!p1@MLLT11!0.66!49.38!MLLT11;;chr9:35732561..35732587,+!p3@CREB3!0.66!17.17!CREB3;;chr9:16705069..16705086,-!p3@BNC2!0.66!3.58!BNC2;;chr3:141087454..141087465,+!p19@ZBTB38!0.66!3.58!ZBTB38;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.58!SMARCD3;;chr2:85980951..85981004,+!p1@ATOH8!0.65!6.01!ATOH8;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.43!FOXC2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.58!MECOM;;chr1:23885981..23886002,-!p1@ID3!0.63!680.85!ID3;;chr8:145159846..145159889,+!p6@MAF1!0.63!5.01!MAF1;;chr1:170633348..170633399,+!p2@PRRX1!0.63!4.72!PRRX1;;chr12:77459306..77459365,-!p1@E2F7!0.62!47.23!E2F7;;chr12:80084167..80084197,-!p5@PAWR!0.62!8.44!PAWR;;chr1:151032922..151032951,+!p2@MLLT11!0.62!5.72!MLLT11;;chr15:67418177..67418204,+!p9@SMAD3!0.62!3.15!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.62!3.15!SMAD3;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.15!ATOH8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.61!45.08!ZC3H12A;;chr14:62162285..62162296,+!p3@HIF1A!0.61!19.04!HIF1A;;chr3:168864315..168864339,-!p2@MECOM!0.61!5.58!MECOM;;chr1:170632959..170632987,+!p4@PRRX1!0.61!3.43!PRRX1;;chr15:67418047..67418093,+!p4@SMAD3!0.60!4.01!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!0.60!3.58!BNC1;;chr1:170632285..170632309,+!p1@PRRX1!0.60!3.43!PRRX1;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.01!SMAD3;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!181.48!NFE2L1;;chr22:38598086..38598105,+!p1@MAFF!0.59!37.36!MAFF;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.87!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.59!8.44!TWIST1;;chr4:174451350..174451363,-!p3@HAND2!0.59!2.86!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!0.58!32.92!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!0.57!7.73!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.57!3.01!SHOX2;;chr2:85981073..85981091,+!p5@ATOH8!0.57!2.72!ATOH8;;chr6:10412600..10412637,-!p1@TFAP2A!0.56!4.87!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.55!34.35!AHR;;chr7:17338324..17338341,+!p3@AHR!0.55!10.30!AHR;;chr5:139487608..139487663,+!p3@PURA!0.55!6.30!PURA;;chr11:65687243..65687276,+!p8@DRAP1!0.55!3.72!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.87!MAZ;;chr3:170076314..170076334,+!p2@SKIL!0.54!3.43!SKIL;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.15!POU2F3;;chr3:169381420..169381535,-!p1@MECOM!0.54!3.01!MECOM;;chr16:86612320..86612394,+!p1@FOXL1!0.54!2.43!FOXL1;;chr2:231280954..231280965,+!p2@SP100!0.53!5.01!SP100;;chr19:33865009..33865090,+!p3@CEBPG!0.53!3.43!CEBPG;;chr12:27485785..27485816,+!p1@ARNTL2!0.52!20.61!ARNTL2;;chr18:19749517..19749531,+!p3@GATA6!0.52!4.72!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.52!4.44!CREB3L1;;chr1:164528911..164528940,+!p7@PBX1!0.52!3.86!PBX1;;chr2:66662396..66662407,+!p4@MEIS1!0.52!2.29!MEIS1;;chr3:141087562..141087594,+!p12@ZBTB38!0.52!2.29!ZBTB38;;chr7:35293685..35293718,-!p1@TBX20!0.52!2.29!TBX20;;chr10:94449703..94449718,+!p1@HHEX!0.51!10.88!HHEX;;chr8:72756213..72756243,-!p5@MSC!0.51!3.15!MSC;;chr3:101568349..101568365,+!p1@NFKBIZ!0.50!149.85!NFKBIZ;;chr9:4300050..4300118,-!p1@GLIS3!0.50!18.46!GLIS3;;chr11:65686776..65686787,+!p9@DRAP1!0.50!2.72!DRAP1;;chr3:25470062..25470084,+!p4@RARB!0.50!2.15!RARB;;chr15:67430351..67430366,+!p10@SMAD3!0.50!2.15!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.49!15.31!MXD1;;chr12:27485823..27485868,+!p2@ARNTL2!0.49!10.88!ARNTL2;;chr12:66218255..66218304,+!p3@HMGA2!0.49!6.87!HMGA2;;chr16:29819403..29819442,+!p5@MAZ!0.48!22.33!MAZ;;chr12:80084279..80084293,-!p8@PAWR!0.48!3.86!PAWR;;chr16:67881588..67881612,-!p2@CENPT!0.48!3.01!CENPT;;chr12:27485889..27485900,+!p4@ARNTL2!0.48!2.58!ARNTL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.48!2.43!TFAP2A;;chr5:142780189..142780223,-!p6@NR3C1!0.48!2.00!NR3C1;;chr8:106330972..106330979,+!p7@ZFPM2!0.48!2.00!ZFPM2;;chr3:169381183..169381205,-!p4@MECOM!0.48!2.00!MECOM;;chr1:151032833..151032850,+!p3@MLLT11!0.47!5.44!MLLT11;;chr8:72756063..72756125,-!p1@MSC!0.47!4.72!MSC;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr15:67418119..67418162,+!p5@SMAD3!0.47!2.29!SMAD3;;chr2:85980919..85980942,+!p4@ATOH8!0.47!2.15!ATOH8;;chr19:53758058..53758088,-!p2@ZNF677!0.46!8.01!ZNF677;;chr1:8934931..8934947,-!p4@ENO1!0.46!8.01!ENO1;;chr21:36260773..36260804,-!p7@RUNX1!0.46!2.86!RUNX1;;chr4:81118647..81118666,+!p1@PRDM8!0.46!2.72!PRDM8;;chr2:66662510..66662521,+!p6@MEIS1!0.46!1.86!MEIS1;;chr12:66218469..66218477,+!p16@HMGA2!0.46!1.86!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.46!1.86!PAWR;;chr5:142780237..142780261,-!p7@NR3C1!0.46!1.86!NR3C1;;chr4:2263809..2263854,-!p1@MXD4!0.45!97.90!MXD4;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.60!PAWR;;chr11:65686952..65686975,+!p5@DRAP1!0.45!13.60!DRAP1;;chr12:80084737..80084763,-!p3@PAWR!0.45!9.02!PAWR;;chr12:66218573..66218596,+!p7@HMGA2!0.45!3.15!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.45!2.43!TBX18;;chr1:935467..935484,-!p1@HES4!0.44!10.59!HES4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.44!9.88!LRRFIP2;;chr6:126112074..126112144,+!p1@NCOA7!0.43!32.63!NCOA7;;chr22:29196030..29196075,-!p5@XBP1!0.43!2.43!XBP1;;chr2:172950227..172950249,+!p2@DLX1!0.43!1.72!DLX1;;chr6:126102339..126102351,+!p12@NCOA7!0.43!1.72!NCOA7;;chr6:126240490..126240501,+!p11@NCOA7!0.43!1.72!NCOA7;;chr8:106330515..106330525,+!p6@ZFPM2!0.43!1.72!ZFPM2;;chr8:106330848..106330859,+!p5@ZFPM2!0.43!1.72!ZFPM2;;chr11:128563652..128563689,+!p3@FLI1!0.43!1.72!FLI1;;chr3:52001448..52001478,-!p2@PCBP4!0.42!32.92!PCBP4;;chr3:52001396..52001425,-!p4@PCBP4!0.42!3.58!PCBP4;;chr20:6748325..6748352,+!p1@BMP2!0.42!2.72!BMP2;;chr2:66662249..66662267,+!p2@MEIS1!0.41!8.30!MEIS1;;chr4:4861385..4861398,+!p1@MSX1!0.41!6.30!MSX1;;chr2:19558373..19558392,-!p1@OSR1!0.41!5.72!OSR1;;chr12:80084862..80084884,-!p7@PAWR!0.41!4.15!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!0.41!1.57!PKNOX2;;chr8:40755333..40755352,-!p1@ZMAT4!0.41!1.57!ZMAT4;;chr8:72756380..72756427,-!p8@MSC!0.41!1.57!MSC;;chr1:170633058..170633084,+!p5@PRRX1!0.41!1.57!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.41!1.57!KLF17;;chr7:26191809..26191890,+!p1@NFE2L3!0.40!10.59!NFE2L3;;chr3:71630980..71631110,-!p3@FOXP1!0.40!7.30!FOXP1;;chr3:52001426..52001447,-!p3@PCBP4!0.40!5.72!PCBP4;;chr2:85981222..85981259,+!p2@ATOH8!0.40!3.01!ATOH8;;chr3:71355163..71355209,-!p5@FOXP1!0.40!2.43!FOXP1;;chr12:66218443..66218461,+!p8@HMGA2!0.40!2.15!HMGA2;;chr10:64134120..64134183,+!p1@ZNF365!0.40!2.00!ZNF365;;chr7:64467057..64467078,-!p1@ZNF117!0.39!41.79!ZNF117;;chr2:145275162..145275202,-!p2@ZEB2!0.39!12.45!ZEB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.39!7.87!HNRPK;;chr19:42636586..42636607,-!p1@POU2F2!0.39!5.44!POU2F2;;chr1:935398..935465,-!p2@HES4!0.39!3.86!HES4;;chr19:52956798..52956843,+!p1@ZNF578!0.39!3.72!ZNF578;;chr1:2985760..2985774,+!p1@PRDM16!0.39!1.43!PRDM16;;chr15:66994718..66994729,+!p4@SMAD6!0.39!1.43!SMAD6;;chr18:19749353..19749367,+!p4@GATA6!0.39!1.43!GATA6;;chr18:19749504..19749515,+!p5@GATA6!0.39!1.43!GATA6;;chr11:34642656..34642667,+!p2@EHF!0.39!1.43!EHF;;chr12:115122318..115122331,-!p2@TBX3!0.39!1.43!TBX3;;chr2:85981008..85981025,+!p7@ATOH8!0.39!1.43!ATOH8;;chr3:71294304..71294332,-!p35@FOXP1!0.39!1.43!FOXP1;;chr19:57791328..57791377,+!p2@ZNF460!0.38!25.76!ZNF460;;chr19:57999101..57999158,+!p1@ZNF419!0.38!14.17!ZNF419;;chr19:58694421..58694485,+!p1@ZNF274!0.38!11.02!ZNF274;;chr1:114302066..114302080,-!p2@PHTF1!0.3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002589;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.ctss.bed.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11433-118H2
|is_a=EFO:0002091;;FF:0000169
|is_obsolete=
|library_id=CNhs12043
|library_id_phase_based=2:CNhs12043
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11433
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TAGCTT.11433
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11433
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TAGCTT.11433
|name=Smooth Muscle Cells - Brachiocephalic, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=custom
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1851
|rna_od260/230=
|rna_od260/280=
|rna_position=H2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118H2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10002.TAGCTT
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.90964009118239e-217!GO:0005737;cytoplasm;7.82017346646986e-201!GO:0043226;organelle;4.6224600936759e-164!GO:0043229;intracellular organelle;1.08324953491624e-163!GO:0043231;intracellular membrane-bound organelle;2.85228654497267e-161!GO:0043227;membrane-bound organelle;4.72764108855116e-161!GO:0044444;cytoplasmic part;9.19742115623753e-146!GO:0044422;organelle part;2.90771312077755e-127!GO:0044446;intracellular organelle part;9.33892556473257e-126!GO:0032991;macromolecular complex;7.22222993033176e-91!GO:0030529;ribonucleoprotein complex;7.17240433102659e-80!GO:0044238;primary metabolic process;8.15940738522165e-78!GO:0044237;cellular metabolic process;3.02661732613647e-77!GO:0005515;protein binding;8.3965194864274e-73!GO:0005739;mitochondrion;2.96562604250956e-70!GO:0043170;macromolecule metabolic process;4.29477590954813e-69!GO:0043233;organelle lumen;5.04593720569433e-63!GO:0031974;membrane-enclosed lumen;5.04593720569433e-63!GO:0003723;RNA binding;1.14067296501993e-59!GO:0019538;protein metabolic process;5.92514852544122e-59!GO:0031090;organelle membrane;3.14153088721705e-55!GO:0044428;nuclear part;3.21516226988969e-53!GO:0006412;translation;4.63820706522586e-53!GO:0044260;cellular macromolecule metabolic process;5.21074879721672e-53!GO:0005840;ribosome;5.63189416038521e-53!GO:0044267;cellular protein metabolic process;1.37606025779815e-52!GO:0015031;protein transport;2.21985575907795e-49!GO:0005634;nucleus;6.83992473468516e-48!GO:0003735;structural constituent of ribosome;7.51935869896539e-48!GO:0044429;mitochondrial part;7.51935869896539e-48!GO:0033036;macromolecule localization;2.90406003781732e-47!GO:0009058;biosynthetic process;2.92660161446078e-46!GO:0045184;establishment of protein localization;6.4958448710856e-46!GO:0043234;protein complex;6.92500477383058e-46!GO:0008104;protein localization;4.08338468840957e-45!GO:0016043;cellular component organization and biogenesis;2.30437220191276e-44!GO:0009059;macromolecule biosynthetic process;2.57110218464955e-43!GO:0044249;cellular biosynthetic process;2.38029618531629e-42!GO:0005829;cytosol;1.64759615797703e-41!GO:0033279;ribosomal subunit;2.04806478553085e-41!GO:0031967;organelle envelope;2.34778102221987e-40!GO:0031975;envelope;5.81077554663332e-40!GO:0006396;RNA processing;7.04780673683745e-38!GO:0046907;intracellular transport;3.30367181358548e-37!GO:0031981;nuclear lumen;8.811556537129e-34!GO:0043283;biopolymer metabolic process;9.4016691473991e-33!GO:0005740;mitochondrial envelope;2.79376072121509e-32!GO:0006886;intracellular protein transport;3.51338602504433e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.15357025783647e-31!GO:0031966;mitochondrial membrane;1.82434123919136e-30!GO:0019866;organelle inner membrane;2.88849381314689e-29!GO:0016071;mRNA metabolic process;2.59748784124358e-28!GO:0005743;mitochondrial inner membrane;7.45216181678873e-28!GO:0065003;macromolecular complex assembly;1.61286454856483e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.24015054257631e-27!GO:0008380;RNA splicing;2.3063896512131e-27!GO:0010467;gene expression;1.66814506346317e-26!GO:0006996;organelle organization and biogenesis;5.89706474238823e-26!GO:0043228;non-membrane-bound organelle;7.57544537904867e-26!GO:0043232;intracellular non-membrane-bound organelle;7.57544537904867e-26!GO:0006397;mRNA processing;6.22473820581132e-25!GO:0044445;cytosolic part;1.18714976544557e-24!GO:0051649;establishment of cellular localization;3.82809388092445e-24!GO:0022607;cellular component assembly;4.07894181636473e-24!GO:0006119;oxidative phosphorylation;4.30449405623984e-24!GO:0051641;cellular localization;7.00994488323797e-24!GO:0005783;endoplasmic reticulum;1.59119329361972e-23!GO:0044455;mitochondrial membrane part;5.0639917720206e-23!GO:0015934;large ribosomal subunit;8.50248911074764e-23!GO:0006457;protein folding;1.15338731935907e-22!GO:0012505;endomembrane system;4.76993179077016e-22!GO:0000166;nucleotide binding;8.44685958987361e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.44685958987361e-22!GO:0016462;pyrophosphatase activity;2.1345405094981e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.40761987812803e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;4.8972022978559e-21!GO:0005794;Golgi apparatus;1.06695287798608e-20!GO:0017111;nucleoside-triphosphatase activity;1.21539059339612e-20!GO:0005654;nucleoplasm;6.94014226466127e-20!GO:0015935;small ribosomal subunit;1.11050469818779e-19!GO:0006512;ubiquitin cycle;2.34975310521422e-19!GO:0005746;mitochondrial respiratory chain;6.28960358547526e-19!GO:0016874;ligase activity;6.41090691957958e-19!GO:0005681;spliceosome;6.53358934361179e-19!GO:0031980;mitochondrial lumen;9.28100046547989e-19!GO:0005759;mitochondrial matrix;9.28100046547989e-19!GO:0044432;endoplasmic reticulum part;6.87331579319438e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.3231926392863e-18!GO:0019941;modification-dependent protein catabolic process;1.62070995075746e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.62070995075746e-17!GO:0044257;cellular protein catabolic process;2.12460123404615e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.86180380220619e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.75306549298922e-17!GO:0044265;cellular macromolecule catabolic process;1.15421202428561e-16!GO:0032553;ribonucleotide binding;1.16816898682679e-16!GO:0032555;purine ribonucleotide binding;1.16816898682679e-16!GO:0043412;biopolymer modification;1.24082279325878e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.48513640846844e-16!GO:0003954;NADH dehydrogenase activity;1.48513640846844e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.48513640846844e-16!GO:0017076;purine nucleotide binding;1.53518749460157e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.72437453922073e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.75840075425899e-16!GO:0022618;protein-RNA complex assembly;2.13111085399412e-16!GO:0043285;biopolymer catabolic process;2.16590990577821e-16!GO:0051186;cofactor metabolic process;2.17647128556458e-16!GO:0048193;Golgi vesicle transport;4.56799833520176e-16!GO:0044451;nucleoplasm part;5.04044768290589e-16!GO:0030163;protein catabolic process;6.51458916603728e-16!GO:0048770;pigment granule;8.72945158716223e-16!GO:0042470;melanosome;8.72945158716223e-16!GO:0006464;protein modification process;1.2719262304526e-15!GO:0006605;protein targeting;1.58884839627054e-15!GO:0006259;DNA metabolic process;1.62172289995149e-15!GO:0009057;macromolecule catabolic process;1.66543303601691e-15!GO:0051082;unfolded protein binding;1.78809511825734e-15!GO:0005730;nucleolus;2.76857549098385e-15!GO:0008135;translation factor activity, nucleic acid binding;3.10180878517047e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.21388291507064e-15!GO:0042773;ATP synthesis coupled electron transport;8.21388291507064e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.09024480324343e-14!GO:0045271;respiratory chain complex I;1.09024480324343e-14!GO:0005747;mitochondrial respiratory chain complex I;1.09024480324343e-14!GO:0016192;vesicle-mediated transport;1.12947738545903e-14!GO:0005761;mitochondrial ribosome;1.22352325269387e-14!GO:0000313;organellar ribosome;1.22352325269387e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.28503623487769e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.36013151500842e-14!GO:0044248;cellular catabolic process;2.03197565883912e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.94386667740523e-14!GO:0009055;electron carrier activity;4.24901414657736e-14!GO:0007049;cell cycle;1.75944488463298e-13!GO:0008134;transcription factor binding;2.49864563839657e-13!GO:0005524;ATP binding;7.7789806392837e-13!GO:0043687;post-translational protein modification;8.73113056719309e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40057528099246e-12!GO:0006732;coenzyme metabolic process;1.78591150208475e-12!GO:0032559;adenyl ribonucleotide binding;1.88797887979465e-12!GO:0012501;programmed cell death;3.0819499000606e-12!GO:0030554;adenyl nucleotide binding;3.30479522588674e-12!GO:0005789;endoplasmic reticulum membrane;4.47825208145685e-12!GO:0006915;apoptosis;6.991721310622e-12!GO:0005793;ER-Golgi intermediate compartment;1.19404813302478e-11!GO:0042254;ribosome biogenesis and assembly;1.59474467817422e-11!GO:0003743;translation initiation factor activity;1.65372407897741e-11!GO:0008639;small protein conjugating enzyme activity;3.14005391002006e-11!GO:0006413;translational initiation;5.0522804111174e-11!GO:0004842;ubiquitin-protein ligase activity;6.74799216518261e-11!GO:0009259;ribonucleotide metabolic process;6.9498069278266e-11!GO:0019787;small conjugating protein ligase activity;1.06870913277233e-10!GO:0003676;nucleic acid binding;1.1241515762857e-10!GO:0008219;cell death;1.7897302808235e-10!GO:0016265;death;1.7897302808235e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.0620807440787e-10!GO:0008565;protein transporter activity;2.33701099011404e-10!GO:0006163;purine nucleotide metabolic process;2.58486290395216e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.20623467086654e-10!GO:0009150;purine ribonucleotide metabolic process;3.87800419231875e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.87800419231875e-10!GO:0000375;RNA splicing, via transesterification reactions;3.87800419231875e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.87800419231875e-10!GO:0022402;cell cycle process;4.59976628021878e-10!GO:0016881;acid-amino acid ligase activity;7.45537677062679e-10!GO:0031965;nuclear membrane;1.09179352933164e-09!GO:0016887;ATPase activity;1.2201422843974e-09!GO:0003924;GTPase activity;1.25808560281638e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.3278282874069e-09!GO:0009260;ribonucleotide biosynthetic process;1.41003397172421e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.48162448522829e-09!GO:0048523;negative regulation of cellular process;1.50957321159203e-09!GO:0006446;regulation of translational initiation;1.52845573621332e-09!GO:0006164;purine nucleotide biosynthetic process;1.57739371038349e-09!GO:0006974;response to DNA damage stimulus;1.97456857956661e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.97898011534083e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.28175586259294e-09!GO:0006913;nucleocytoplasmic transport;2.65739279321351e-09!GO:0005635;nuclear envelope;2.75107455217548e-09!GO:0009141;nucleoside triphosphate metabolic process;2.75291560645593e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.78358251751789e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.78358251751789e-09!GO:0044453;nuclear membrane part;2.87647476286784e-09!GO:0042623;ATPase activity, coupled;2.98186772363493e-09!GO:0009056;catabolic process;3.88475587726469e-09!GO:0030120;vesicle coat;3.88475587726469e-09!GO:0030662;coated vesicle membrane;3.88475587726469e-09!GO:0051188;cofactor biosynthetic process;4.61560617348527e-09!GO:0044431;Golgi apparatus part;4.81624741758824e-09!GO:0051169;nuclear transport;5.02084619459104e-09!GO:0000278;mitotic cell cycle;5.03708989941009e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.89237259473775e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.89237259473775e-09!GO:0006399;tRNA metabolic process;1.09490366746268e-08!GO:0015986;ATP synthesis coupled proton transport;1.18552654341497e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18552654341497e-08!GO:0005768;endosome;1.29171222730294e-08!GO:0017038;protein import;1.36460630648955e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.50195252877038e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.50195252877038e-08!GO:0009060;aerobic respiration;1.63549169224934e-08!GO:0005788;endoplasmic reticulum lumen;1.96215228554668e-08!GO:0006461;protein complex assembly;1.96891773396262e-08!GO:0016491;oxidoreductase activity;2.06384061141281e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.72292053501114e-08!GO:0051246;regulation of protein metabolic process;3.05315345857213e-08!GO:0019829;cation-transporting ATPase activity;3.76813141504034e-08!GO:0048475;coated membrane;3.83680392099553e-08!GO:0030117;membrane coat;3.83680392099553e-08!GO:0046034;ATP metabolic process;3.92679026270942e-08!GO:0048519;negative regulation of biological process;4.83605118167113e-08!GO:0003712;transcription cofactor activity;4.89667873248877e-08!GO:0006281;DNA repair;5.35993366052677e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4575742979487e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.4575742979487e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4575742979487e-08!GO:0045333;cellular respiration;7.87166108109605e-08!GO:0043038;amino acid activation;8.66515292440097e-08!GO:0006418;tRNA aminoacylation for protein translation;8.66515292440097e-08!GO:0043039;tRNA aminoacylation;8.66515292440097e-08!GO:0043067;regulation of programmed cell death;1.21744840451275e-07!GO:0065002;intracellular protein transport across a membrane;1.28736727088959e-07!GO:0007005;mitochondrion organization and biogenesis;1.29779368781145e-07!GO:0016070;RNA metabolic process;1.7607444164057e-07!GO:0006754;ATP biosynthetic process;1.90000879308808e-07!GO:0006753;nucleoside phosphate metabolic process;1.90000879308808e-07!GO:0005643;nuclear pore;1.90985729656255e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.90985729656255e-07!GO:0042981;regulation of apoptosis;2.04192429291726e-07!GO:0006793;phosphorus metabolic process;2.15723078082136e-07!GO:0006796;phosphate metabolic process;2.15723078082136e-07!GO:0008026;ATP-dependent helicase activity;2.55670522765956e-07!GO:0051726;regulation of cell cycle;2.55670522765956e-07!GO:0000074;regulation of progression through cell cycle;2.72154688670826e-07!GO:0043069;negative regulation of programmed cell death;2.82401670375676e-07!GO:0006364;rRNA processing;3.03793191017046e-07!GO:0016740;transferase activity;3.10815798731899e-07!GO:0009108;coenzyme biosynthetic process;3.82726328220438e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.043534285198e-07!GO:0009117;nucleotide metabolic process;4.16538529665421e-07!GO:0006916;anti-apoptosis;4.43286201165156e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.00193752943208e-07!GO:0016072;rRNA metabolic process;5.00193752943208e-07!GO:0016604;nuclear body;6.02933772757776e-07!GO:0005525;GTP binding;6.04885761511249e-07!GO:0051187;cofactor catabolic process;6.64204328959636e-07!GO:0000139;Golgi membrane;7.03770849016348e-07!GO:0006099;tricarboxylic acid cycle;7.21009512825577e-07!GO:0046356;acetyl-CoA catabolic process;7.21009512825577e-07!GO:0043066;negative regulation of apoptosis;7.69871177242753e-07!GO:0004386;helicase activity;7.88349246017137e-07!GO:0016787;hydrolase activity;7.94701322087974e-07!GO:0032446;protein modification by small protein conjugation;8.96687604954879e-07!GO:0009719;response to endogenous stimulus;1.04644534280518e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06710158775104e-06!GO:0016567;protein ubiquitination;1.35512826786346e-06!GO:0009109;coenzyme catabolic process;1.51692575770857e-06!GO:0016310;phosphorylation;1.55788748388665e-06!GO:0045259;proton-transporting ATP synthase complex;1.57137386544154e-06!GO:0005770;late endosome;1.68308361203283e-06!GO:0006091;generation of precursor metabolites and energy;2.00512016799865e-06!GO:0046930;pore complex;2.13942540885454e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.38345517273075e-06!GO:0016853;isomerase activity;2.68398387751159e-06!GO:0006084;acetyl-CoA metabolic process;2.80254497773689e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.80254497773689e-06!GO:0000151;ubiquitin ligase complex;2.84347028314583e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.39818182097669e-06!GO:0006752;group transfer coenzyme metabolic process;3.53494954825079e-06!GO:0044440;endosomal part;3.53494954825079e-06!GO:0010008;endosome membrane;3.53494954825079e-06!GO:0032561;guanyl ribonucleotide binding;3.56163871475669e-06!GO:0019001;guanyl nucleotide binding;3.56163871475669e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.80951071765279e-06!GO:0065004;protein-DNA complex assembly;3.98538674315754e-06!GO:0005667;transcription factor complex;4.55547839739293e-06!GO:0031988;membrane-bound vesicle;4.72592948190308e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98342675296596e-06!GO:0016779;nucleotidyltransferase activity;5.14198691929921e-06!GO:0005798;Golgi-associated vesicle;5.14198691929921e-06!GO:0008654;phospholipid biosynthetic process;6.1068605113222e-06!GO:0000087;M phase of mitotic cell cycle;7.11125712708821e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.04654046896783e-06!GO:0005762;mitochondrial large ribosomal subunit;8.29812612101246e-06!GO:0000315;organellar large ribosomal subunit;8.29812612101246e-06!GO:0007067;mitosis;8.43892425199348e-06!GO:0031252;leading edge;8.47703449266193e-06!GO:0045454;cell redox homeostasis;9.49327650507134e-06!GO:0006323;DNA packaging;9.93258999866084e-06!GO:0015630;microtubule cytoskeleton;9.94677326811585e-06!GO:0051301;cell division;1.00054211621275e-05!GO:0051170;nuclear import;1.04402781835418e-05!GO:0051276;chromosome organization and biogenesis;1.05994020083103e-05!GO:0006260;DNA replication;1.06412260004698e-05!GO:0004298;threonine endopeptidase activity;1.20974738381324e-05!GO:0003714;transcription corepressor activity;1.21404890669825e-05!GO:0006613;cotranslational protein targeting to membrane;1.3165216916737e-05!GO:0006606;protein import into nucleus;1.35876147617309e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.61260151974726e-05!GO:0008361;regulation of cell size;1.61432673457177e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.69705599992644e-05!GO:0022403;cell cycle phase;1.73413083628825e-05!GO:0016607;nuclear speck;1.74762259173444e-05!GO:0016049;cell growth;1.77007359909242e-05!GO:0003697;single-stranded DNA binding;2.07866999870659e-05!GO:0043623;cellular protein complex assembly;2.1600158476938e-05!GO:0005694;chromosome;2.21077721011502e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.29532339140572e-05!GO:0031968;organelle outer membrane;2.48215319969219e-05!GO:0005048;signal sequence binding;3.16114116437936e-05!GO:0043566;structure-specific DNA binding;3.2533241601805e-05!GO:0019867;outer membrane;3.37239080096114e-05!GO:0006333;chromatin assembly or disassembly;3.92781926004065e-05!GO:0001558;regulation of cell growth;3.97068084966499e-05!GO:0050794;regulation of cellular process;3.97068084966499e-05!GO:0006403;RNA localization;4.02179335417416e-05!GO:0016859;cis-trans isomerase activity;4.09700404071369e-05!GO:0003724;RNA helicase activity;4.37609666673423e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.44190705097014e-05!GO:0050657;nucleic acid transport;4.45354430842822e-05!GO:0051236;establishment of RNA localization;4.45354430842822e-05!GO:0050658;RNA transport;4.45354430842822e-05!GO:0000245;spliceosome assembly;4.67598203758751e-05!GO:0051789;response to protein stimulus;5.14603638833482e-05!GO:0006986;response to unfolded protein;5.14603638833482e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.3486626885402e-05!GO:0030867;rough endoplasmic reticulum membrane;5.88370017028071e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.98219145098056e-05!GO:0044427;chromosomal part;6.6931255086236e-05!GO:0007243;protein kinase cascade;6.92317122783705e-05!GO:0005773;vacuole;7.06577771984547e-05!GO:0005813;centrosome;7.78014392997147e-05!GO:0005741;mitochondrial outer membrane;8.04572721497088e-05!GO:0005905;coated pit;8.39694544656422e-05!GO:0006414;translational elongation;8.52753130375715e-05!GO:0005769;early endosome;8.80129616250052e-05!GO:0045786;negative regulation of progression through cell cycle;9.05575951183208e-05!GO:0006334;nucleosome assembly;9.55400652424735e-05!GO:0031982;vesicle;9.77109405223801e-05!GO:0031410;cytoplasmic vesicle;0.000122890298049845!GO:0016564;transcription repressor activity;0.000154560052712223!GO:0030029;actin filament-based process;0.000155165928991576!GO:0003899;DNA-directed RNA polymerase activity;0.000155462961012904!GO:0006366;transcription from RNA polymerase II promoter;0.000160151672003033!GO:0030663;COPI coated vesicle membrane;0.000160151672003033!GO:0030126;COPI vesicle coat;0.000160151672003033!GO:0000314;organellar small ribosomal subunit;0.000160151672003033!GO:0005763;mitochondrial small ribosomal subunit;0.000160151672003033!GO:0006612;protein targeting to membrane;0.000190402027894664!GO:0030133;transport vesicle;0.000257830783810031!GO:0005885;Arp2/3 protein complex;0.000278093438126452!GO:0043021;ribonucleoprotein binding;0.000289015030724181!GO:0005815;microtubule organizing center;0.00028944935670469!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000300101465426176!GO:0007010;cytoskeleton organization and biogenesis;0.000305381479278875!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000309925839649911!GO:0031497;chromatin assembly;0.000344657428698149!GO:0016197;endosome transport;0.000362586661718863!GO:0043284;biopolymer biosynthetic process;0.000366656001021727!GO:0031072;heat shock protein binding;0.000366656001021727!GO:0031324;negative regulation of cellular metabolic process;0.000368152988753152!GO:0006626;protein targeting to mitochondrion;0.000379616673820746!GO:0008092;cytoskeletal protein binding;0.000412670775166109!GO:0009165;nucleotide biosynthetic process;0.000412670775166109!GO:0007264;small GTPase mediated signal transduction;0.000428943761813138!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000447904869445738!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000448656316560429!GO:0000785;chromatin;0.000472998617497216!GO:0006839;mitochondrial transport;0.000490344288843628!GO:0043681;protein import into mitochondrion;0.00051205892029395!GO:0051427;hormone receptor binding;0.000517829852174097!GO:0000323;lytic vacuole;0.000518913115899384!GO:0005764;lysosome;0.000518913115899384!GO:0046474;glycerophospholipid biosynthetic process;0.0005285388954975!GO:0019899;enzyme binding;0.000590787924970422!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000602657691905498!GO:0015399;primary active transmembrane transporter activity;0.000602657691905498!GO:0051028;mRNA transport;0.000619228873376129!GO:0044262;cellular carbohydrate metabolic process;0.000649075980733318!GO:0019843;rRNA binding;0.000717938052584585!GO:0016044;membrane organization and biogenesis;0.000728967587336937!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000767911248344858!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00080148272312422!GO:0006891;intra-Golgi vesicle-mediated transport;0.000860166623696087!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000879619927133392!GO:0051920;peroxiredoxin activity;0.000958225313017753!GO:0000279;M phase;0.000961980059057392!GO:0048522;positive regulation of cellular process;0.000995165544383635!GO:0030137;COPI-coated vesicle;0.00102260600995084!GO:0035257;nuclear hormone receptor binding;0.00102352166205737!GO:0030658;transport vesicle membrane;0.00102352166205737!GO:0040008;regulation of growth;0.00102557372563057!GO:0045045;secretory pathway;0.00103900480871137!GO:0004576;oligosaccharyl transferase activity;0.00106191623700733!GO:0008186;RNA-dependent ATPase activity;0.00110683163630284!GO:0030659;cytoplasmic vesicle membrane;0.00130881485442458!GO:0046467;membrane lipid biosynthetic process;0.00133906680075249!GO:0007006;mitochondrial membrane organization and biogenesis;0.00138184303449932!GO:0051329;interphase of mitotic cell cycle;0.00138191765817062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00150505269702887!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00150505269702887!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00150505269702887!GO:0008250;oligosaccharyl transferase complex;0.00162942330480899!GO:0009892;negative regulation of metabolic process;0.00166820204907813!GO:0048471;perinuclear region of cytoplasm;0.00177224585360023!GO:0005791;rough endoplasmic reticulum;0.00182481835559957!GO:0007050;cell cycle arrest;0.00183728829811037!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00188626151618998!GO:0000059;protein import into nucleus, docking;0.00190856588150874!GO:0030132;clathrin coat of coated pit;0.00192384755169551!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00192927569224714!GO:0050789;regulation of biological process;0.00193914323729131!GO:0042802;identical protein binding;0.0019502316613502!GO:0065009;regulation of a molecular function;0.0019695648335469!GO:0008047;enzyme activator activity;0.00199305396767857!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00200330748433281!GO:0016568;chromatin modification;0.00209870526317885!GO:0003713;transcription coactivator activity;0.00210353360714513!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00210353360714513!GO:0015002;heme-copper terminal oxidase activity;0.00210353360714513!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00210353360714513!GO:0004129;cytochrome-c oxidase activity;0.00210353360714513!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00211045305462286!GO:0051540;metal cluster binding;0.0021783556873518!GO:0051536;iron-sulfur cluster binding;0.0021783556873518!GO:0030118;clathrin coat;0.00219336706109098!GO:0006082;organic acid metabolic process;0.0022607084760451!GO:0030176;integral to endoplasmic reticulum membrane;0.00233748688115855!GO:0046489;phosphoinositide biosynthetic process;0.00236932683794819!GO:0019752;carboxylic acid metabolic process;0.00236932683794819!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249102506643586!GO:0051325;interphase;0.00259872526538136!GO:0030134;ER to Golgi transport vesicle;0.00275341358368746!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00279702909986199!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00279702909986199!GO:0004004;ATP-dependent RNA helicase activity;0.00279702909986199!GO:0048500;signal recognition particle;0.00280098333721729!GO:0018196;peptidyl-asparagine modification;0.00287208642705118!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00287208642705118!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00294809728947798!GO:0006383;transcription from RNA polymerase III promoter;0.0030002382998155!GO:0044433;cytoplasmic vesicle part;0.00301362652416177!GO:0008139;nuclear localization sequence binding;0.00315126742081511!GO:0003684;damaged DNA binding;0.00316912286990581!GO:0030660;Golgi-associated vesicle membrane;0.00325576816484738!GO:0046483;heterocycle metabolic process;0.00332451608638803!GO:0006950;response to stress;0.00349876247179701!GO:0030880;RNA polymerase complex;0.00351179397392652!GO:0005819;spindle;0.00355492596018356!GO:0009967;positive regulation of signal transduction;0.00399644538954221!GO:0003746;translation elongation factor activity;0.00400813903802041!GO:0051168;nuclear export;0.00415950319755815!GO:0051087;chaperone binding;0.00428374061802232!GO:0006118;electron transport;0.00466413331906598!GO:0022890;inorganic cation transmembrane transporter activity;0.00467382636161929!GO:0030127;COPII vesicle coat;0.00495796082393909!GO:0012507;ER to Golgi transport vesicle membrane;0.00495796082393909!GO:0048487;beta-tubulin binding;0.00528751061108297!GO:0008632;apoptotic program;0.005367915876844!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.005367915876844!GO:0015631;tubulin binding;0.005367915876844!GO:0008180;signalosome;0.00537933323480008!GO:0016272;prefoldin complex;0.00552866577927201!GO:0015992;proton transport;0.00552866577927201!GO:0003711;transcription elongation regulator activity;0.00563711434388396!GO:0012506;vesicle membrane;0.00564297225898176!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00591797489437792!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00600909913026426!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00607455079844455!GO:0045047;protein targeting to ER;0.00607455079844455!GO:0006509;membrane protein ectodomain proteolysis;0.00624307568564177!GO:0033619;membrane protein proteolysis;0.00624307568564177!GO:0006497;protein amino acid lipidation;0.00644447927888798!GO:0043492;ATPase activity, coupled to movement of substances;0.00658374311361781!GO:0030125;clathrin vesicle coat;0.00660635044103781!GO:0030665;clathrin coated vesicle membrane;0.00660635044103781!GO:0006595;polyamine metabolic process;0.00667865066065922!GO:0006818;hydrogen transport;0.00680484899375759!GO:0030119;AP-type membrane coat adaptor complex;0.00719736761502041!GO:0008312;7S RNA binding;0.0072276262990071!GO:0005869;dynactin complex;0.00740409055068847!GO:0003690;double-stranded DNA binding;0.00777517502583145!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00780895073925766!GO:0000428;DNA-directed RNA polymerase complex;0.00780895073925766!GO:0001726;ruffle;0.00786334924797067!GO:0030308;negative regulation of cell growth;0.0080064886160441!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00800708446807977!GO:0008610;lipid biosynthetic process;0.00801014986415885!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00805728282793764!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00818414425603747!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00819020229888847!GO:0006778;porphyrin metabolic process;0.00829720515941574!GO:0033013;tetrapyrrole metabolic process;0.00829720515941574!GO:0045792;negative regulation of cell size;0.00836615975502035!GO:0006417;regulation of translation;0.00848334428122261!GO:0030027;lamellipodium;0.00855166122522617!GO:0035258;steroid hormone receptor binding;0.00881100881054038!GO:0000075;cell cycle checkpoint;0.00881782017978109!GO:0005862;muscle thin filament tropomyosin;0.00886811470256619!GO:0031902;late endosome membrane;0.00891199392157256!GO:0006520;amino acid metabolic process;0.00904685665160841!GO:0006650;glycerophospholipid metabolic process;0.00907855100779054!GO:0030521;androgen receptor signaling pathway;0.00943657128848186!GO:0000287;magnesium ion binding;0.00949404807194567!GO:0043433;negative regulation of transcription factor activity;0.00951396097321987!GO:0000049;tRNA binding;0.00951525671861942!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00957428871892999!GO:0000339;RNA cap binding;0.00967268909126824!GO:0006979;response to oxidative stress;0.00969941486926182!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0102089545013538!GO:0048468;cell development;0.0102346988502382!GO:0030145;manganese ion binding;0.0104373640660791!GO:0032940;secretion by cell;0.0106774351246338!GO:0051539;4 iron, 4 sulfur cluster binding;0.0108572634131972!GO:0004674;protein serine/threonine kinase activity;0.0109001127638607!GO:0007030;Golgi organization and biogenesis;0.0109355292629071!GO:0008033;tRNA processing;0.0110622992457898!GO:0042168;heme metabolic process;0.0112564027367275!GO:0050681;androgen receptor binding;0.0112760646289455!GO:0044452;nucleolar part;0.0116430979378505!GO:0046519;sphingoid metabolic process;0.0117870543172711!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0128044727110528!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0128765946238718!GO:0043022;ribosome binding;0.0131218915962375!GO:0000082;G1/S transition of mitotic cell cycle;0.0131267859351853!GO:0006892;post-Golgi vesicle-mediated transport;0.0131856687037573!GO:0006007;glucose catabolic process;0.0133740238097411!GO:0030384;phosphoinositide metabolic process;0.0135755523409407!GO:0005832;chaperonin-containing T-complex;0.0136229984974393!GO:0030131;clathrin adaptor complex;0.0137076323894059!GO:0031901;early endosome membrane;0.0139208598765865!GO:0031625;ubiquitin protein ligase binding;0.0139280255271852!GO:0051287;NAD binding;0.0140445710998786!GO:0016563;transcription activator activity;0.0140445710998786!GO:0007034;vacuolar transport;0.0145230451471638!GO:0016126;sterol biosynthetic process;0.0145241410956291!GO:0031543;peptidyl-proline dioxygenase activity;0.014804584734132!GO:0005801;cis-Golgi network;0.0149519253456089!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149975481697595!GO:0007033;vacuole organization and biogenesis;0.0151044095646334!GO:0009889;regulation of biosynthetic process;0.0160447263773769!GO:0032984;macromolecular complex disassembly;0.016069208689055!GO:0042158;lipoprotein biosynthetic process;0.016069208689055!GO:0003729;mRNA binding;0.0160712462041892!GO:0048144;fibroblast proliferation;0.0164215732442204!GO:0048145;regulation of fibroblast proliferation;0.0164215732442204!GO:0050811;GABA receptor binding;0.0167639848913854!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0169795895025067!GO:0033673;negative regulation of kinase activity;0.0170965522322623!GO:0006469;negative regulation of protein kinase activity;0.0170965522322623!GO:0007040;lysosome organization and biogenesis;0.0170965522322623!GO:0006672;ceramide metabolic process;0.0171108522993281!GO:0045936;negative regulation of phosphate metabolic process;0.0172909189292883!GO:0005874;microtubule;0.0176461478995853!GO:0016363;nuclear matrix;0.0179465823231356!GO:0031301;integral to organelle membrane;0.0182553388528517!GO:0017166;vinculin binding;0.0186528104520476!GO:0030041;actin filament polymerization;0.0187797495546551!GO:0051128;regulation of cellular component organization and biogenesis;0.0187863749370975!GO:0004177;aminopeptidase activity;0.0188322143750898!GO:0016481;negative regulation of transcription;0.019163779952445!GO:0031326;regulation of cellular biosynthetic process;0.0195976356415248!GO:0000786;nucleosome;0.0195976356415248!GO:0006984;ER-nuclear signaling pathway;0.0198682346276458!GO:0050662;coenzyme binding;0.0200473563643154!GO:0006506;GPI anchor biosynthetic process;0.0208334259617967!GO:0003756;protein disulfide isomerase activity;0.0209368826481951!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0209368826481951!GO:0008243;plasminogen activator activity;0.0210073576824815!GO:0006505;GPI anchor metabolic process;0.0212281409758938!GO:0008234;cysteine-type peptidase activity;0.0212805631408894!GO:0051348;negative regulation of transferase activity;0.0215744086136966!GO:0031418;L-ascorbic acid binding;0.0216942677745327!GO:0006354;RNA elongation;0.0219322762820387!GO:0006779;porphyrin biosynthetic process;0.0219678869216598!GO:0033014;tetrapyrrole biosynthetic process;0.0219678869216598!GO:0008022;protein C-terminus binding;0.0220497971666814!GO:0019798;procollagen-proline dioxygenase activity;0.0220497971666814!GO:0005684;U2-dependent spliceosome;0.0223195687500509!GO:0043241;protein complex disassembly;0.0229023284425355!GO:0006611;protein export from nucleus;0.0230773478797258!GO:0005096;GTPase activator activity;0.0232621453958063!GO:0006261;DNA-dependent DNA replication;0.0233839771423589!GO:0031529;ruffle organization and biogenesis;0.023542190838474!GO:0019206;nucleoside kinase activity;0.0240006851861123!GO:0050178;phenylpyruvate tautomerase activity;0.0240428843061505!GO:0005100;Rho GTPase activator activity;0.0240738761127561!GO:0045926;negative regulation of growth;0.0242283734943955!GO:0043065;positive regulation of apoptosis;0.0242823060135588!GO:0000096;sulfur amino acid metabolic process;0.0247579786882272!GO:0007021;tubulin folding;0.0247882916442493!GO:0009116;nucleoside metabolic process;0.0254506706972798!GO:0016408;C-acyltransferase activity;0.0254506706972798!GO:0005637;nuclear inner membrane;0.0262260835121498!GO:0043068;positive regulation of programmed cell death;0.0263503079750866!GO:0030833;regulation of actin filament polymerization;0.0268715299555194!GO:0005758;mitochondrial intermembrane space;0.0275191045512664!GO:0006302;double-strand break repair;0.0276082915845225!GO:0030433;ER-associated protein catabolic process;0.0276150906889058!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0276150906889058!GO:0009225;nucleotide-sugar metabolic process;0.0276203403210918!GO:0048146;positive regulation of fibroblast proliferation;0.0284704931018262!GO:0005774;vacuolar membrane;0.0285802566170041!GO:0006783;heme biosynthetic process;0.0290980154292647!GO:0051252;regulation of RNA metabolic process;0.0291069601573402!GO:0007041;lysosomal transport;0.0294058269951211!GO:0006289;nucleotide-excision repair;0.0297454571884886!GO:0050790;regulation of catalytic activity;0.0297983783966751!GO:0006740;NADPH regeneration;0.0305837606049012!GO:0006098;pentose-phosphate shunt;0.0305837606049012!GO:0016301;kinase activity;0.0318462489120153!GO:0031371;ubiquitin conjugating enzyme complex;0.0319372583237407!GO:0006352;transcription initiation;0.0323040447912528!GO:0051098;regulation of binding;0.0324854500638344!GO:0043624;cellular protein complex disassembly;0.0324854500638344!GO:0005669;transcription factor TFIID complex;0.0325518514774917!GO:0006807;nitrogen compound metabolic process;0.0330794186348103!GO:0008154;actin polymerization and/or depolymerization;0.0336333917921094!GO:0004722;protein serine/threonine phosphatase activity;0.0339313641727434!GO:0008320;protein transmembrane transporter activity;0.0339313641727434!GO:0005099;Ras GTPase activator activity;0.0344173912154022!GO:0022884;macromolecule transmembrane transporter activity;0.0344173912154022!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0344173912154022!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0347329264361434!GO:0006144;purine base metabolic process;0.0349028071988753!GO:0008287;protein serine/threonine phosphatase complex;0.0353004738076672!GO:0008538;proteasome activator activity;0.0353004738076672!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0353004738076672!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0353004738076672!GO:0042326;negative regulation of phosphorylation;0.0354428269027942!GO:0008637;apoptotic mitochondrial changes;0.0355561486259318!GO:0030508;thiol-disulfide exchange intermediate activity;0.0362678036208633!GO:0032906;transforming growth factor-beta2 production;0.0363584282663402!GO:0032909;regulation of transforming growth factor-beta2 production;0.0363584282663402!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0363773147219309!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0369761095750289!GO:0008652;amino acid biosynthetic process;0.0370538520506076!GO:0030503;regulation of cell redox homeostasis;0.0370538520506076!GO:0030911;TPR domain binding;0.0370538520506076!GO:0006607;NLS-bearing substrate import into nucleus;0.0371709979425263!GO:0051059;NF-kappaB binding;0.0392195617836655!GO:0030032;lamellipodium biogenesis;0.0394279503480069!GO:0006458;'de novo' protein folding;0.0399711949758518!GO:0051084;'de novo' posttranslational protein folding;0.0399711949758518!GO:0007265;Ras protein signal transduction;0.0409754787493497!GO:0003678;DNA helicase activity;0.0419469437091312!GO:0008147;structural constituent of bone;0.0425677216158548!GO:0022411;cellular component disassembly;0.0425677216158548!GO:0048518;positive regulation of biological process;0.0425677216158548!GO:0001666;response to hypoxia;0.042833860844204!GO:0000209;protein polyubiquitination;0.0432063705215425!GO:0006220;pyrimidine nucleotide metabolic process;0.0432438664740919!GO:0009308;amine metabolic process;0.043481748952859!GO:0016860;intramolecular oxidoreductase activity;0.0440217852943753!GO:0005138;interleukin-6 receptor binding;0.045163479380088!GO:0016791;phosphoric monoester hydrolase activity;0.0453358901938268!GO:0009112;nucleobase metabolic process;0.0457375480110197!GO:0005092;GDP-dissociation inhibitor activity;0.0463794383383121!GO:0005784;translocon complex;0.0474316797542386!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0478655009987641!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0478655009987641!GO:0030518;steroid hormone receptor signaling pathway;0.0480274621653503!GO:0048037;cofactor binding;0.0494619696420826!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0499860888836862
|sample_id=11433
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brachiocephalic artery
|top_motifs=HIF1A:2.20667198736;PPARG:1.85257670204;ONECUT1,2:1.36028064264;IKZF1:1.24643136568;HOX{A5,B5}:1.21024016896;XBP1:1.16879653071;ALX1:1.15016432622;GTF2A1,2:1.09871854515;POU3F1..4:1.05529530472;ELK1,4_GABP{A,B1}:1.00532099968;NKX3-1:1.00218907197;POU1F1:0.963924769952;NFE2L1:0.949162333421;SRF:0.93117440492;FOX{I1,J2}:0.92960407349;GCM1,2:0.914998209913;HMX1:0.883168917773;CRX:0.804284584272;ADNP_IRX_SIX_ZHX:0.788537338662;HSF1,2:0.742802352274;TP53:0.736650046473;TEAD1:0.733046917859;TBP:0.718284307447;TFAP4:0.715402276872;HES1:0.708630967765;MAFB:0.707286369216;MYBL2:0.661966316033;NR3C1:0.647510283096;PAX8:0.643777983237;ZBTB6:0.63056145292;TAL1_TCF{3,4,12}:0.622322103801;ATF6:0.616731302809;MTE{core}:0.58398595987;SOX17:0.582932615746;GLI1..3:0.566052608192;NHLH1,2:0.565749715005;NANOG{mouse}:0.552878441798;HMGA1,2:0.534013106736;LEF1_TCF7_TCF7L1,2:0.531320002278;SMAD1..7,9:0.500457878623;TLX1..3_NFIC{dimer}:0.499228507668;EBF1:0.475579294158;NFIX:0.47539001743;ZNF238:0.47448959152;NFATC1..3:0.47020291028;CDC5L:0.455650089913;TBX4,5:0.443522367198;TFAP2B:0.408109440875;AHR_ARNT_ARNT2:0.405548817398;ZIC1..3:0.388090103604;PAX5:0.384149537075;FOSL2:0.378644367119;EN1,2:0.37766973293;HLF:0.37527299133;AIRE:0.334850299634;TFCP2:0.332368188343;HOXA9_MEIS1:0.330234199494;NFE2L2:0.324032322051;FOS_FOS{B,L1}_JUN{B,D}:0.319416594839;STAT5{A,B}:0.318955573903;NKX3-2:0.313489056156;NRF1:0.311951702962;SOX2:0.269108096201;BACH2:0.258621893509;ZNF143:0.224573042732;ZNF148:0.218001902553;CEBPA,B_DDIT3:0.214676288412;MEF2{A,B,C,D}:0.214555038179;ESRRA:0.208309817132;ELF1,2,4:0.178228193925;UFEwm:0.177939935174;ALX4:0.176357516232;GFI1B:0.161461841703;LHX3,4:0.129767503987;REST:0.122927127468;PBX1:0.0994884163671;EVI1:0.0973463866608;POU5F1:0.0972105101422;XCPE1{core}:0.0904617589708;MYOD1:0.0883205374171;NR5A1,2:0.069404267483;NANOG:0.0595603852991;JUN:0.058566012037;GATA6:0.0560212052821;KLF4:0.0555230635881;ARID5B:0.0452293176241;TLX2:0.0368302836613;ATF2:0.036249322557;MAZ:0.0220755398791;TGIF1:0.0170968899323;CREB1:0.0166175253261;PRDM1:0.0158419664448;HNF1A:0.0136247452826;NFKB1_REL_RELA:0.00130029352053;RFX1:-0.00152549560539;PAX2:-0.00495017152531;ZFP161:-0.00861972366248;GTF2I:-0.0203227292145;AR:-0.0348239558452;RBPJ:-0.041930020463;NFE2:-0.0539400391137;HIC1:-0.0639276093446;PRRX1,2:-0.0645460852103;PAX6:-0.0784054189083;GZF1:-0.0866311567248;HBP1_HMGB_SSRP1_UBTF:-0.0867317777281;TFAP2{A,C}:-0.089049289661;MYB:-0.09087375816;VSX1,2:-0.100607823124;ZNF384:-0.101785095265;FOXN1:-0.10427569308;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.106531300822;MTF1:-0.109814373042;bHLH_family:-0.11349358104;NKX2-2,8:-0.125689136114;MYFfamily:-0.158584510933;TEF:-0.178466977641;PAX1,9:-0.193008694109;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.195222975069;STAT2,4,6:-0.198473163941;RXR{A,B,G}:-0.204205113879;SPZ1:-0.2106841166;ZBTB16:-0.223071842829;MED-1{core}:-0.224739902721;IKZF2:-0.225676165205;ETS1,2:-0.229742463813;POU6F1:-0.235030121649;YY1:-0.238553553904;ATF4:-0.244285023711;IRF7:-0.248728108802;PATZ1:-0.251959172723;TFDP1:-0.257468071395;GFI1:-0.259746341425;SPI1:-0.263906024645;RUNX1..3:-0.266747704162;SOX{8,9,10}:-0.27455004706;HAND1,2:-0.281378698204;MZF1:-0.290423512767;SOX5:-0.296744862585;NFIL3:-0.307050316946;POU2F1..3:-0.324063841075;SP1:-0.333196773994;OCT4_SOX2{dimer}:-0.34560643863;FOXA2:-0.362679913319;FOX{F1,F2,J1}:-0.375579347482;EGR1..3:-0.376312699408;BPTF:-0.390807041497;SPIB:-0.41531281444;LMO2:-0.417102286384;HNF4A_NR2F1,2:-0.430739846099;PAX4:-0.435711363875;FOXM1:-0.448364725894;E2F1..5:-0.459512986756;ATF5_CREB3:-0.461720897729;FOX{D1,D2}:-0.462915809832;CDX1,2,4:-0.504831413132;TOPORS:-0.511705961719;IRF1,2:-0.521602512305;FOXQ1:-0.527531621357;ZEB1:-0.530404614563;NFY{A,B,C}:-0.538535878221;FOXL1:-0.550176031134;FOXP3:-0.592413286556;STAT1,3:-0.598970652949;ESR1:-0.601178937331;NR1H4:-0.6199675144;GATA4:-0.638885086884;RFX2..5_RFXANK_RFXAP:-0.641310003947;NKX2-3_NKX2-5:-0.666021270177;RORA:-0.679228113982;RXRA_VDR{dimer}:-0.686698051023;HOX{A4,D4}:-0.695165368899;SNAI1..3:-0.706258099441;PITX1..3:-0.709847157861;ZNF423:-0.776274373006;FOXP1:-0.778303529831;FOXD3:-0.830737508579;BREu{core}:-0.839809593629;T:-0.845877971565;CUX2:-0.858505857934;DMAP1_NCOR{1,2}_SMARC:-0.877884262026;PAX3,7:-0.941893460356;HOX{A6,A7,B6,B7}:-0.967126621834;NR6A1:-0.995840578353;SREBF1,2:-1.00705795082;RREB1:-1.13511728067;PDX1:-1.13629206991;NKX2-1,4:-1.18359422975;DBP:-1.20297584898;FOXO1,3,4:-1.21464459277;EP300:-1.31037987638;NKX6-1,2:-1.91033059527
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11433-118H2;search_select_hide=table117:FF:11433-118H2
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Smooth Muscle Cells - Brachiocephalic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12043
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrachiocephalic artery
dev stageNA
sexunknown
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1851
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004781
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12043 CAGE DRX008474 DRR009346
Accession ID Hg19

Library idBAMCTSS
CNhs12043 DRZ000771 DRZ002156
Accession ID Hg38

Library idBAMCTSS
CNhs12043 DRZ012121 DRZ013506
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004781
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.TAGCTT sRNA-Seq DRX036997 DRR041363
Accession ID Hg19

Library idBAMCTSS
SRhi10002.TAGCTT DRZ007005


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.192
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.139
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.109
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.188
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.751
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0581
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.149
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.323
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.359
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0525
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00703
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00757
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.175
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00173
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.109
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.155
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.176
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.456
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.603
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.234
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.109
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0.0581
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12043

Jaspar motifP-value
MA0002.20.175
MA0003.10.529
MA0004.10.00158
MA0006.10.209
MA0007.10.838
MA0009.10.157
MA0014.10.787
MA0017.10.505
MA0018.20.00746
MA0019.10.412
MA0024.12.27224e-4
MA0025.10.953
MA0027.10.901
MA0028.14.26692e-5
MA0029.10.224
MA0030.10.891
MA0031.10.0595
MA0035.20.563
MA0038.10.385
MA0039.20.615
MA0040.10.557
MA0041.10.164
MA0042.10.657
MA0043.10.746
MA0046.10.407
MA0047.20.576
MA0048.10.302
MA0050.11.80983e-4
MA0051.10.581
MA0052.10.633
MA0055.10.341
MA0057.10.21
MA0058.14.78128e-4
MA0059.10.701
MA0060.15.87434e-4
MA0061.10.28
MA0062.20.0132
MA0065.20.0974
MA0066.10.978
MA0067.10.0194
MA0068.10.595
MA0069.10.919
MA0070.10.0909
MA0071.10.937
MA0072.10.937
MA0073.10.325
MA0074.10.686
MA0076.17.75504e-5
MA0077.10.238
MA0078.10.223
MA0079.20.113
MA0080.22.8319e-5
MA0081.10.406
MA0083.14.80087e-4
MA0084.10.0485
MA0087.10.298
MA0088.10.499
MA0090.15.03149e-5
MA0091.10.574
MA0092.10.0373
MA0093.10.00917
MA0099.23.14263e-10
MA0100.10.132
MA0101.10.698
MA0102.20.291
MA0103.11.63101e-4
MA0104.20.0187
MA0105.10.036
MA0106.10.0394
MA0107.10.544
MA0108.20.00426
MA0111.10.00687
MA0112.20.433
MA0113.10.918
MA0114.10.304
MA0115.10.49
MA0116.10.0413
MA0117.10.921
MA0119.10.426
MA0122.10.583
MA0124.10.349
MA0125.10.767
MA0131.10.641
MA0135.10.661
MA0136.10.033
MA0137.20.164
MA0138.20.45
MA0139.10.793
MA0140.10.531
MA0141.10.696
MA0142.10.622
MA0143.10.692
MA0144.10.11
MA0145.10.449
MA0146.10.332
MA0147.10.236
MA0148.10.281
MA0149.10.755
MA0150.10.364
MA0152.10.153
MA0153.10.489
MA0154.10.215
MA0155.10.927
MA0156.10.463
MA0157.10.465
MA0159.10.606
MA0160.10.475
MA0162.10.0511
MA0163.10.927
MA0164.10.96
MA0258.10.102
MA0259.10.246



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12043

Novel motifP-value
10.49
100.225
1000.023
1010.091
1020.649
1030.392
1040.581
1050.258
1060.37
1070.684
1080.599
1090.852
110.826
1100.723
1110.115
1120.762
1130.143
1140.711
1150.683
1160.131
1170.603
1180.801
1190.91
120.877
1200.288
1210.994
1220.655
1230.0199
1240.0708
1250.808
1260.365
1270.463
1280.386
1290.579
130.171
1300.86
1310.021
1320.617
1330.288
1340.18
1350.414
1360.169
1370.453
1380.897
1390.0252
140.0848
1400.667
1410.629
1420.816
1430.324
1440.509
1450.582
1460.405
1470.201
1480.252
1490.475
150.511
1500.535
1510.885
1520.0157
1530.708
1540.928
1550.00184
1560.569
1570.509
1580.0165
1590.233
160.346
1600.449
1610.798
1620.611
1630.413
1640.203
1650.115
1660.0444
1670.953
1680.831
1690.812
170.66
180.0928
190.913
20.646
200.684
210.754
220.891
230.126
240.604
250.661
260.441
270.427
280.553
290.387
30.882
300.239
310.976
320.00542
330.0912
340.839
350.521
360.0441
370.202
380.533
390.471
40.454
400.107
410.591
420.65
430.397
440.673
450.954
460.75
470.876
480.704
490.0349
50.963
500.834
510.304
520.435
530.199
540.964
550.423
560.36
570.846
580.529
590.817
60.276
600.337
610.281
620.805
630.82
640.783
650.958
660.971
670.459
680.636
690.745
70.899
700.528
710.48
720.138
730.00343
740.633
750.652
760.71
770.0655
780.279
790.813
80.878
800.576
810.251
820.439
830.42
840.837
850.806
860.16
870.00162
880.813
890.325
90.937
900.979
910.32
920.771
930.966
940.889
950.22
960.208
970.517
980.0264
990.0554



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12043


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002589 (smooth muscle cell of the brachiocephalic vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001529 (brachiocephalic artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0007204 (brachiocephalic vasculature)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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