FF:11439-118H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005184 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005184 | ||
|accession_numbers=CAGE;DRX008509;DRR009381;DRZ000806;DRZ002191;DRZ012156;DRZ013541 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037233;DRR041599;DRZ007241 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11439-118H8 | |id=FF:11439-118H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000176 | ||
|is_obsolete= | |||
|library_id=CNhs12049 | |||
|library_id_phase_based=2:CNhs12049 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11439 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TAGCTT.11439 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11439 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TAGCTT.11439 | |||
|name=Smooth Muscle Cells - Umbilical Artery, donor3 | |name=Smooth Muscle Cells - Umbilical Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12049,LSID838,release011,COMPLETED | |profile_hcage=CNhs12049,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA252-R10n | |rna_catalog_number=CA252-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H8 | |rna_tube_id=118H8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.TAGCTT | |||
|sample_age=Neonatal | |sample_age=Neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.71610418069163e-230!GO:0005737;cytoplasm;8.90655749362452e-200!GO:0043226;organelle;1.39804408141129e-181!GO:0043229;intracellular organelle;2.15800226611447e-181!GO:0043231;intracellular membrane-bound organelle;9.27112503675715e-178!GO:0043227;membrane-bound organelle;2.50928969941568e-177!GO:0044444;cytoplasmic part;1.16037044063251e-145!GO:0044422;organelle part;9.26080990054967e-143!GO:0044446;intracellular organelle part;1.83167198174702e-141!GO:0032991;macromolecular complex;2.78229898523914e-100!GO:0030529;ribonucleoprotein complex;7.98531543966225e-86!GO:0044237;cellular metabolic process;1.10683420319348e-83!GO:0044238;primary metabolic process;5.66995777520492e-83!GO:0005515;protein binding;1.32559301823735e-77!GO:0005739;mitochondrion;2.38803115265434e-75!GO:0043170;macromolecule metabolic process;9.89372128564467e-74!GO:0043233;organelle lumen;1.14219730924943e-68!GO:0031974;membrane-enclosed lumen;1.14219730924943e-68!GO:0044428;nuclear part;2.90956312303876e-62!GO:0005634;nucleus;6.40910407370892e-60!GO:0003723;RNA binding;1.50147213151797e-58!GO:0005840;ribosome;6.19477116074341e-56!GO:0031090;organelle membrane;6.72007582770047e-54!GO:0043234;protein complex;4.64185087495367e-51!GO:0044429;mitochondrial part;7.07261538747355e-51!GO:0006412;translation;7.41439750947625e-51!GO:0019538;protein metabolic process;1.22025840980486e-50!GO:0003735;structural constituent of ribosome;2.85487484711061e-50!GO:0009058;biosynthetic process;1.84490128254152e-47!GO:0044260;cellular macromolecule metabolic process;2.73750228060086e-45!GO:0016043;cellular component organization and biogenesis;2.82318600174267e-45!GO:0044267;cellular protein metabolic process;1.1873486153997e-44!GO:0044249;cellular biosynthetic process;2.39993415939084e-44!GO:0031967;organelle envelope;2.94295654594592e-43!GO:0033279;ribosomal subunit;6.50856809909026e-43!GO:0031975;envelope;7.19756156130889e-43!GO:0009059;macromolecule biosynthetic process;2.4345420780243e-42!GO:0006396;RNA processing;4.47910439504454e-42!GO:0005829;cytosol;2.79746226185631e-40!GO:0015031;protein transport;1.1953161574258e-39!GO:0033036;macromolecule localization;4.50578752183877e-38!GO:0031981;nuclear lumen;8.18138387022803e-38!GO:0043283;biopolymer metabolic process;1.0602168395544e-36!GO:0045184;establishment of protein localization;3.33870660316462e-36!GO:0008104;protein localization;6.07593371972716e-36!GO:0005740;mitochondrial envelope;5.17960748897587e-34!GO:0043228;non-membrane-bound organelle;2.49514403117587e-33!GO:0043232;intracellular non-membrane-bound organelle;2.49514403117587e-33!GO:0006996;organelle organization and biogenesis;9.20733522445802e-33!GO:0031966;mitochondrial membrane;5.23741144707823e-32!GO:0046907;intracellular transport;5.31419724688828e-32!GO:0010467;gene expression;3.99986340644562e-31!GO:0019866;organelle inner membrane;8.83284712381728e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.83284712381728e-31!GO:0016071;mRNA metabolic process;1.36008379367636e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55623805798824e-30!GO:0005743;mitochondrial inner membrane;3.82346820592567e-29!GO:0008380;RNA splicing;8.56359235628703e-29!GO:0065003;macromolecular complex assembly;1.8922609503535e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.75783310477499e-28!GO:0006886;intracellular protein transport;5.17664779887168e-27!GO:0006397;mRNA processing;9.36918625026396e-27!GO:0022607;cellular component assembly;7.707737331346e-25!GO:0044445;cytosolic part;1.00691959653986e-24!GO:0006259;DNA metabolic process;2.9630857616674e-24!GO:0044455;mitochondrial membrane part;9.52063779635969e-24!GO:0006119;oxidative phosphorylation;1.85332639677165e-23!GO:0015934;large ribosomal subunit;4.45877452616249e-23!GO:0005654;nucleoplasm;4.01263116243671e-22!GO:0005681;spliceosome;1.08923540607704e-21!GO:0012505;endomembrane system;3.60622184978313e-21!GO:0005783;endoplasmic reticulum;4.99215587080286e-21!GO:0015935;small ribosomal subunit;6.86181288078234e-21!GO:0031980;mitochondrial lumen;1.00399358354402e-20!GO:0005759;mitochondrial matrix;1.00399358354402e-20!GO:0000166;nucleotide binding;1.20710247453747e-20!GO:0051649;establishment of cellular localization;2.44901687568161e-20!GO:0051641;cellular localization;3.55172114130279e-20!GO:0007049;cell cycle;5.33628920232044e-20!GO:0006457;protein folding;1.17173809536073e-19!GO:0005746;mitochondrial respiratory chain;3.27754123397388e-19!GO:0016462;pyrophosphatase activity;1.13408330692011e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.46092714690546e-18!GO:0044451;nucleoplasm part;2.10284419262602e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.1799476854502e-18!GO:0017111;nucleoside-triphosphatase activity;5.38166955604973e-18!GO:0044432;endoplasmic reticulum part;2.54463474703465e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.79364632508776e-17!GO:0005794;Golgi apparatus;5.38860797001064e-17!GO:0051186;cofactor metabolic process;5.6332110835438e-17!GO:0048770;pigment granule;7.05655013669729e-17!GO:0042470;melanosome;7.05655013669729e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.38161197057663e-16!GO:0003954;NADH dehydrogenase activity;1.38161197057663e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.38161197057663e-16!GO:0005730;nucleolus;1.42244410061623e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.83141055883563e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.46743405868421e-16!GO:0016874;ligase activity;6.05376364530944e-16!GO:0022402;cell cycle process;7.5402419891012e-16!GO:0000278;mitotic cell cycle;1.20310618130522e-15!GO:0005761;mitochondrial ribosome;1.3103007339343e-15!GO:0000313;organellar ribosome;1.3103007339343e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.59125278701584e-15!GO:0017076;purine nucleotide binding;7.89702164352255e-15!GO:0032553;ribonucleotide binding;7.90746234129858e-15!GO:0032555;purine ribonucleotide binding;7.90746234129858e-15!GO:0022618;protein-RNA complex assembly;7.90746234129858e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.10382505507644e-14!GO:0045271;respiratory chain complex I;1.10382505507644e-14!GO:0005747;mitochondrial respiratory chain complex I;1.10382505507644e-14!GO:0044265;cellular macromolecule catabolic process;1.1890902744402e-14!GO:0008134;transcription factor binding;1.24737846531534e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26242744659553e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.65291008250236e-14!GO:0042773;ATP synthesis coupled electron transport;1.65291008250236e-14!GO:0051082;unfolded protein binding;2.36776058939608e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.98168441378799e-14!GO:0003676;nucleic acid binding;4.41495249876424e-14!GO:0006605;protein targeting;5.1870781714518e-14!GO:0009057;macromolecule catabolic process;9.10671806113219e-14!GO:0048193;Golgi vesicle transport;9.62253123432934e-14!GO:0043285;biopolymer catabolic process;1.41565431609711e-13!GO:0042254;ribosome biogenesis and assembly;1.47330651690915e-13!GO:0006512;ubiquitin cycle;1.8629265248812e-13!GO:0008135;translation factor activity, nucleic acid binding;1.90154886303237e-13!GO:0009055;electron carrier activity;2.82672978649871e-13!GO:0044248;cellular catabolic process;4.06248823163242e-13!GO:0043412;biopolymer modification;6.2439382241127e-13!GO:0006732;coenzyme metabolic process;1.07656709822271e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36336779259701e-12!GO:0005524;ATP binding;1.63285371652731e-12!GO:0019941;modification-dependent protein catabolic process;1.95072075097962e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.95072075097962e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.36311222186718e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.64701360418444e-12!GO:0000375;RNA splicing, via transesterification reactions;2.64701360418444e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.64701360418444e-12!GO:0044257;cellular protein catabolic process;2.7050865808389e-12!GO:0032559;adenyl ribonucleotide binding;3.41775406645927e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.80225139526971e-12!GO:0030554;adenyl nucleotide binding;4.73412720706987e-12!GO:0005789;endoplasmic reticulum membrane;5.07235146081896e-12!GO:0006464;protein modification process;8.88505440428325e-12!GO:0016192;vesicle-mediated transport;9.7898149761785e-12!GO:0030163;protein catabolic process;1.32587112134861e-11!GO:0006974;response to DNA damage stimulus;1.33349644444024e-11!GO:0009259;ribonucleotide metabolic process;5.35132866189191e-11!GO:0005793;ER-Golgi intermediate compartment;6.7088750261242e-11!GO:0000087;M phase of mitotic cell cycle;6.98250829652473e-11!GO:0007067;mitosis;7.58457311602264e-11!GO:0005694;chromosome;8.91779878836942e-11!GO:0044427;chromosomal part;1.07618831390148e-10!GO:0006163;purine nucleotide metabolic process;1.1082188027203e-10!GO:0016070;RNA metabolic process;1.43747828088916e-10!GO:0005635;nuclear envelope;1.62379719083144e-10!GO:0006399;tRNA metabolic process;1.62379719083144e-10!GO:0022403;cell cycle phase;1.78959236150199e-10!GO:0006260;DNA replication;2.36385599778724e-10!GO:0003743;translation initiation factor activity;2.65494290554018e-10!GO:0009150;purine ribonucleotide metabolic process;3.0403511308197e-10!GO:0003712;transcription cofactor activity;4.055015827772e-10!GO:0051276;chromosome organization and biogenesis;4.16650642036715e-10!GO:0044453;nuclear membrane part;4.17568112321136e-10!GO:0016491;oxidoreductase activity;5.42377664707251e-10!GO:0012501;programmed cell death;5.42377664707251e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.95218887324744e-10!GO:0051726;regulation of cell cycle;6.11659289596089e-10!GO:0006164;purine nucleotide biosynthetic process;6.35944307011033e-10!GO:0000074;regulation of progression through cell cycle;7.65799915861726e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.22621333288011e-10!GO:0009260;ribonucleotide biosynthetic process;8.84919654731612e-10!GO:0006915;apoptosis;9.35722654704517e-10!GO:0031965;nuclear membrane;9.46308347397724e-10!GO:0006281;DNA repair;9.78965252609447e-10!GO:0048523;negative regulation of cellular process;1.71146744781356e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.71146744781356e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.16591084524184e-09!GO:0009141;nucleoside triphosphate metabolic process;2.20068945925481e-09!GO:0006913;nucleocytoplasmic transport;2.31384676658839e-09!GO:0006323;DNA packaging;2.46278897507383e-09!GO:0006364;rRNA processing;2.72024922681925e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.74952339274642e-09!GO:0043687;post-translational protein modification;3.13626820637414e-09!GO:0006413;translational initiation;3.53733488558178e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73749954482123e-09!GO:0051169;nuclear transport;4.89792377405527e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.1832784672318e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.1832784672318e-09!GO:0042623;ATPase activity, coupled;5.38458494630282e-09!GO:0065004;protein-DNA complex assembly;6.0386249654719e-09!GO:0051301;cell division;6.30778839501702e-09!GO:0016072;rRNA metabolic process;6.94396061318867e-09!GO:0051188;cofactor biosynthetic process;6.98514411154549e-09!GO:0016887;ATPase activity;8.30346400775224e-09!GO:0009060;aerobic respiration;8.60403180130361e-09!GO:0009719;response to endogenous stimulus;9.99106467866849e-09!GO:0008219;cell death;1.0737150139259e-08!GO:0016265;death;1.0737150139259e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.42355048075945e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.42355048075945e-08!GO:0008565;protein transporter activity;1.43809150099278e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.52144969307946e-08!GO:0044431;Golgi apparatus part;1.59134504231981e-08!GO:0006446;regulation of translational initiation;1.62312364273147e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.99147631829675e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.99147631829675e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.99147631829675e-08!GO:0016740;transferase activity;2.03028855795781e-08!GO:0015986;ATP synthesis coupled proton transport;2.46481043834705e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.46481043834705e-08!GO:0005643;nuclear pore;2.68348090673307e-08!GO:0008639;small protein conjugating enzyme activity;2.97483885036848e-08!GO:0016604;nuclear body;3.04502303906447e-08!GO:0030120;vesicle coat;3.13576606233807e-08!GO:0030662;coated vesicle membrane;3.13576606233807e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.42174978266702e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.42174978266702e-08!GO:0048519;negative regulation of biological process;3.65123323049221e-08!GO:0006334;nucleosome assembly;3.66746813388306e-08!GO:0006333;chromatin assembly or disassembly;4.2123289882337e-08!GO:0017038;protein import;4.27694298329272e-08!GO:0065002;intracellular protein transport across a membrane;4.34352702216325e-08!GO:0009117;nucleotide metabolic process;4.5430452206814e-08!GO:0045333;cellular respiration;5.34114646314371e-08!GO:0046034;ATP metabolic process;5.55363723855969e-08!GO:0043038;amino acid activation;5.7039870397964e-08!GO:0006418;tRNA aminoacylation for protein translation;5.7039870397964e-08!GO:0043039;tRNA aminoacylation;5.7039870397964e-08!GO:0004842;ubiquitin-protein ligase activity;5.80073241242697e-08!GO:0009056;catabolic process;6.03775601965537e-08!GO:0019787;small conjugating protein ligase activity;6.91235951260239e-08!GO:0007005;mitochondrion organization and biogenesis;7.15440330789222e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.57243089539728e-08!GO:0006461;protein complex assembly;8.10575534759636e-08!GO:0000785;chromatin;8.76078020451888e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.71966467558852e-08!GO:0000279;M phase;9.91611216444651e-08!GO:0005788;endoplasmic reticulum lumen;1.07515207260174e-07!GO:0019829;cation-transporting ATPase activity;1.50672171315695e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.54085477514133e-07!GO:0031497;chromatin assembly;2.07005693995653e-07!GO:0003924;GTPase activity;2.13836218906866e-07!GO:0046930;pore complex;2.72571023875449e-07!GO:0048475;coated membrane;2.79145235593441e-07!GO:0030117;membrane coat;2.79145235593441e-07!GO:0006754;ATP biosynthetic process;3.41433996624987e-07!GO:0006753;nucleoside phosphate metabolic process;3.41433996624987e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.0061786187819e-07!GO:0006099;tricarboxylic acid cycle;4.37214805764092e-07!GO:0046356;acetyl-CoA catabolic process;4.37214805764092e-07!GO:0005768;endosome;4.71670032887857e-07!GO:0051187;cofactor catabolic process;5.03837839587257e-07!GO:0016881;acid-amino acid ligase activity;5.79226443961407e-07!GO:0015630;microtubule cytoskeleton;6.29250977427845e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.78872793044469e-07!GO:0003697;single-stranded DNA binding;6.81903088299148e-07!GO:0043069;negative regulation of programmed cell death;7.94726673947561e-07!GO:0016779;nucleotidyltransferase activity;9.84737403882239e-07!GO:0045259;proton-transporting ATP synthase complex;1.01308678184361e-06!GO:0006916;anti-apoptosis;1.11588666999185e-06!GO:0051246;regulation of protein metabolic process;1.1986876613632e-06!GO:0009108;coenzyme biosynthetic process;1.23640135464327e-06!GO:0006091;generation of precursor metabolites and energy;1.28875909520077e-06!GO:0006084;acetyl-CoA metabolic process;1.33656285329146e-06!GO:0009109;coenzyme catabolic process;1.43494508507664e-06!GO:0000139;Golgi membrane;1.72049767975839e-06!GO:0043066;negative regulation of apoptosis;1.80059140688738e-06!GO:0043067;regulation of programmed cell death;1.97583443610994e-06!GO:0042981;regulation of apoptosis;2.2674550941539e-06!GO:0006793;phosphorus metabolic process;2.60385322254164e-06!GO:0006796;phosphate metabolic process;2.60385322254164e-06!GO:0005762;mitochondrial large ribosomal subunit;3.23580662259433e-06!GO:0000315;organellar large ribosomal subunit;3.23580662259433e-06!GO:0006366;transcription from RNA polymerase II promoter;3.37846106225419e-06!GO:0004298;threonine endopeptidase activity;3.38610610469456e-06!GO:0016787;hydrolase activity;3.76751073531304e-06!GO:0003899;DNA-directed RNA polymerase activity;3.98553195451279e-06!GO:0016607;nuclear speck;4.11305838615307e-06!GO:0008026;ATP-dependent helicase activity;4.52384229026064e-06!GO:0003714;transcription corepressor activity;4.6853550426778e-06!GO:0005667;transcription factor complex;4.92720902804987e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.34638421604263e-06!GO:0006752;group transfer coenzyme metabolic process;6.3101550086659e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.35419271709247e-06!GO:0004386;helicase activity;7.44628693521572e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.70609941891944e-06!GO:0000245;spliceosome assembly;8.78556789946816e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.61165390331145e-06!GO:0043566;structure-specific DNA binding;1.02301423141991e-05!GO:0045454;cell redox homeostasis;1.05565596468342e-05!GO:0051329;interphase of mitotic cell cycle;1.11764252677827e-05!GO:0016310;phosphorylation;1.16256571216968e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.22230783047062e-05!GO:0016853;isomerase activity;1.22555333458056e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.27284202988651e-05!GO:0045786;negative regulation of progression through cell cycle;1.30855859329366e-05!GO:0005798;Golgi-associated vesicle;1.3368714053864e-05!GO:0031988;membrane-bound vesicle;1.3368714053864e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.60478727845296e-05!GO:0005770;late endosome;1.62275115867306e-05!GO:0016563;transcription activator activity;1.80564462082306e-05!GO:0005905;coated pit;1.90041386532048e-05!GO:0044440;endosomal part;2.07240986445937e-05!GO:0010008;endosome membrane;2.07240986445937e-05!GO:0016049;cell growth;2.3954091642735e-05!GO:0050794;regulation of cellular process;2.50001595784391e-05!GO:0006403;RNA localization;2.59092975841959e-05!GO:0050657;nucleic acid transport;2.70150774889438e-05!GO:0051236;establishment of RNA localization;2.70150774889438e-05!GO:0050658;RNA transport;2.70150774889438e-05!GO:0008361;regulation of cell size;2.76164687861438e-05!GO:0005525;GTP binding;2.89006829641913e-05!GO:0005773;vacuole;2.94195981901696e-05!GO:0016564;transcription repressor activity;3.03817669617521e-05!GO:0008654;phospholipid biosynthetic process;3.13569706472157e-05!GO:0051170;nuclear import;3.26316133455742e-05!GO:0044262;cellular carbohydrate metabolic process;3.8148525690171e-05!GO:0031252;leading edge;3.87075994617321e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.91883628850961e-05!GO:0051325;interphase;4.25422365005844e-05!GO:0001558;regulation of cell growth;4.60566223918287e-05!GO:0005048;signal sequence binding;4.7439216445534e-05!GO:0030867;rough endoplasmic reticulum membrane;4.89096169026954e-05!GO:0000314;organellar small ribosomal subunit;5.04652845506037e-05!GO:0005763;mitochondrial small ribosomal subunit;5.04652845506037e-05!GO:0005819;spindle;5.05788686511105e-05!GO:0006606;protein import into nucleus;5.08554169907266e-05!GO:0016567;protein ubiquitination;5.43596985507663e-05!GO:0032446;protein modification by small protein conjugation;5.44883619679335e-05!GO:0007010;cytoskeleton organization and biogenesis;5.58630004581336e-05!GO:0000151;ubiquitin ligase complex;5.82009618670524e-05!GO:0000786;nucleosome;5.85477652035962e-05!GO:0043623;cellular protein complex assembly;6.64649348266768e-05!GO:0031324;negative regulation of cellular metabolic process;7.05252598774048e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.31571204150673e-05!GO:0016568;chromatin modification;7.85004667562462e-05!GO:0003713;transcription coactivator activity;8.23768179264952e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.44419075455357e-05!GO:0006613;cotranslational protein targeting to membrane;0.000103741472069613!GO:0009165;nucleotide biosynthetic process;0.000110847025603136!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000130424995010484!GO:0031410;cytoplasmic vesicle;0.000135539389603686!GO:0051789;response to protein stimulus;0.000136832009374406!GO:0006986;response to unfolded protein;0.000136832009374406!GO:0031968;organelle outer membrane;0.000143729522295421!GO:0019867;outer membrane;0.000143958523370838!GO:0030029;actin filament-based process;0.000147044851400887!GO:0031982;vesicle;0.000151095469582005!GO:0005813;centrosome;0.000178962988815091!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000181817263633793!GO:0000323;lytic vacuole;0.000189308162869078!GO:0005764;lysosome;0.000189308162869078!GO:0032561;guanyl ribonucleotide binding;0.000210784190144712!GO:0019001;guanyl nucleotide binding;0.000210784190144712!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000226029142455281!GO:0016859;cis-trans isomerase activity;0.000247065099300938!GO:0003724;RNA helicase activity;0.000251698788658434!GO:0006839;mitochondrial transport;0.000252111792993296!GO:0006261;DNA-dependent DNA replication;0.000264698718805418!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00027363463226418!GO:0043681;protein import into mitochondrion;0.000273864362696303!GO:0006626;protein targeting to mitochondrion;0.000290279843899823!GO:0030176;integral to endoplasmic reticulum membrane;0.000293760857383596!GO:0005815;microtubule organizing center;0.000299800928500042!GO:0005741;mitochondrial outer membrane;0.000337443012399163!GO:0051028;mRNA transport;0.000350602627846738!GO:0009892;negative regulation of metabolic process;0.000387908640392238!GO:0019843;rRNA binding;0.000430271562399856!GO:0007006;mitochondrial membrane organization and biogenesis;0.000445881130856305!GO:0008250;oligosaccharyl transferase complex;0.00045193188215462!GO:0005657;replication fork;0.00045193188215462!GO:0030880;RNA polymerase complex;0.000464323675187961!GO:0005769;early endosome;0.000472013278822178!GO:0043021;ribonucleoprotein binding;0.000494458810297365!GO:0005885;Arp2/3 protein complex;0.000548884042524115!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000568276578763095!GO:0008033;tRNA processing;0.000588692787245455!GO:0030663;COPI coated vesicle membrane;0.00067923515042805!GO:0030126;COPI vesicle coat;0.00067923515042805!GO:0004576;oligosaccharyl transferase activity;0.000687130982163111!GO:0048522;positive regulation of cellular process;0.000705798568626635!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000753155105790274!GO:0051427;hormone receptor binding;0.000755234402912513!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000783350852421824!GO:0046474;glycerophospholipid biosynthetic process;0.000794893852328285!GO:0043284;biopolymer biosynthetic process;0.000802943404968103!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000814762157305254!GO:0008092;cytoskeletal protein binding;0.000882065625290968!GO:0030133;transport vesicle;0.00089323758036629!GO:0051920;peroxiredoxin activity;0.000927152958464362!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000980692503872456!GO:0006414;translational elongation;0.000992430743984546!GO:0030137;COPI-coated vesicle;0.0010116469432841!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00101340719591744!GO:0016126;sterol biosynthetic process;0.00101604463337131!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00115207017511644!GO:0000428;DNA-directed RNA polymerase complex;0.00115207017511644!GO:0018196;peptidyl-asparagine modification;0.00115207017511644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00115207017511644!GO:0030132;clathrin coat of coated pit;0.00116848809366307!GO:0005791;rough endoplasmic reticulum;0.00141974660838311!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00143297498704488!GO:0015399;primary active transmembrane transporter activity;0.00143297498704488!GO:0035257;nuclear hormone receptor binding;0.00148664511963313!GO:0046483;heterocycle metabolic process;0.00152180586155997!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00155186037938774!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00155186037938774!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00155186037938774!GO:0040008;regulation of growth;0.0015736212129971!GO:0006891;intra-Golgi vesicle-mediated transport;0.0015736212129971!GO:0006612;protein targeting to membrane;0.00157769194406598!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00161000588512039!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00169173453846525!GO:0003684;damaged DNA binding;0.0017472861840196!GO:0008094;DNA-dependent ATPase activity;0.00179893125596848!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00194527030250136!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00194527030250136!GO:0044452;nucleolar part;0.00194789654996533!GO:0065009;regulation of a molecular function;0.00196761537856328!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00196761537856328!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00198131908086034!GO:0050789;regulation of biological process;0.00202853475142022!GO:0007051;spindle organization and biogenesis;0.00202963656700003!GO:0016044;membrane organization and biogenesis;0.00206713219989995!GO:0019899;enzyme binding;0.00217664750976296!GO:0006082;organic acid metabolic process;0.0021845791933447!GO:0030658;transport vesicle membrane;0.0021845791933447!GO:0051168;nuclear export;0.00218771809229689!GO:0005874;microtubule;0.00219952091141362!GO:0042802;identical protein binding;0.00224676119287929!GO:0006695;cholesterol biosynthetic process;0.00232123406081145!GO:0008047;enzyme activator activity;0.00237166448800069!GO:0007050;cell cycle arrest;0.00247495832434662!GO:0019752;carboxylic acid metabolic process;0.00260698275800576!GO:0006778;porphyrin metabolic process;0.00261133817578284!GO:0033013;tetrapyrrole metabolic process;0.00261133817578284!GO:0005684;U2-dependent spliceosome;0.00262453417860569!GO:0048471;perinuclear region of cytoplasm;0.00265698572620454!GO:0000059;protein import into nucleus, docking;0.0027017992477399!GO:0046467;membrane lipid biosynthetic process;0.00270447589119603!GO:0008186;RNA-dependent ATPase activity;0.00274402907093318!GO:0015992;proton transport;0.00280331994832041!GO:0008610;lipid biosynthetic process;0.00285090986165735!GO:0006818;hydrogen transport;0.0031028693703819!GO:0031301;integral to organelle membrane;0.003306442493201!GO:0017166;vinculin binding;0.00335390246658835!GO:0030118;clathrin coat;0.00351029362691128!GO:0006007;glucose catabolic process;0.00366952916327585!GO:0008139;nuclear localization sequence binding;0.00384532383948341!GO:0006383;transcription from RNA polymerase III promoter;0.00393083576402587!GO:0000775;chromosome, pericentric region;0.00394775794840846!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00398616502202079!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00403441816421513!GO:0015002;heme-copper terminal oxidase activity;0.00403441816421513!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00403441816421513!GO:0004129;cytochrome-c oxidase activity;0.00403441816421513!GO:0000082;G1/S transition of mitotic cell cycle;0.00408165442398949!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00412870480745369!GO:0030134;ER to Golgi transport vesicle;0.00415002029232316!GO:0000075;cell cycle checkpoint;0.00426275607418558!GO:0004177;aminopeptidase activity;0.00435131444766828!GO:0046489;phosphoinositide biosynthetic process;0.00443492509097004!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00462260954120712!GO:0048487;beta-tubulin binding;0.00476614167874221!GO:0005096;GTPase activator activity;0.00484287015690168!GO:0015631;tubulin binding;0.00488445190709134!GO:0016481;negative regulation of transcription;0.0049763494254486!GO:0006740;NADPH regeneration;0.00497708324379293!GO:0006098;pentose-phosphate shunt;0.00497708324379293!GO:0051252;regulation of RNA metabolic process;0.00509715463022366!GO:0051087;chaperone binding;0.00513847747050851!GO:0007243;protein kinase cascade;0.00560071467074335!GO:0031072;heat shock protein binding;0.00576350006018257!GO:0050662;coenzyme binding;0.0060026534008311!GO:0030660;Golgi-associated vesicle membrane;0.0060026534008311!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00601238850203273!GO:0003746;translation elongation factor activity;0.00608938373041774!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00610043789369384!GO:0004004;ATP-dependent RNA helicase activity;0.00624281137492804!GO:0006595;polyamine metabolic process;0.00628580790067655!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00638730439141656!GO:0007264;small GTPase mediated signal transduction;0.00646211055033805!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00648423033517006!GO:0042168;heme metabolic process;0.00650513526811953!GO:0003711;transcription elongation regulator activity;0.00657962830342398!GO:0051539;4 iron, 4 sulfur cluster binding;0.00667059036724574!GO:0006118;electron transport;0.006766411213241!GO:0031418;L-ascorbic acid binding;0.00691978296613282!GO:0022890;inorganic cation transmembrane transporter activity;0.0070551308974106!GO:0006979;response to oxidative stress;0.00705666821571107!GO:0030127;COPII vesicle coat;0.00712741519243823!GO:0012507;ER to Golgi transport vesicle membrane;0.00712741519243823!GO:0006520;amino acid metabolic process;0.00737508284613439!GO:0005869;dynactin complex;0.00738904895611724!GO:0045941;positive regulation of transcription;0.007417874896203!GO:0008632;apoptotic program;0.00747912979843417!GO:0008243;plasminogen activator activity;0.00767574580889471!GO:0045936;negative regulation of phosphate metabolic process;0.00791043137739411!GO:0008180;signalosome;0.00794649672823225!GO:0030308;negative regulation of cell growth;0.00795046809063248!GO:0006779;porphyrin biosynthetic process;0.00795046809063248!GO:0033014;tetrapyrrole biosynthetic process;0.00795046809063248!GO:0043488;regulation of mRNA stability;0.00798028034344212!GO:0043487;regulation of RNA stability;0.00798028034344212!GO:0016363;nuclear matrix;0.00799456850873091!GO:0048500;signal recognition particle;0.00837320590433544!GO:0043492;ATPase activity, coupled to movement of substances;0.00858462852510064!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00914445242786124!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00918235878691551!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00918898110474885!GO:0045792;negative regulation of cell size;0.00924482819160015!GO:0033673;negative regulation of kinase activity;0.00938320096147251!GO:0006469;negative regulation of protein kinase activity;0.00938320096147251!GO:0003729;mRNA binding;0.00939627495385874!GO:0051540;metal cluster binding;0.00947023659386555!GO:0051536;iron-sulfur cluster binding;0.00947023659386555!GO:0031902;late endosome membrane;0.00947023659386555!GO:0007040;lysosome organization and biogenesis;0.00951551877974876!GO:0016197;endosome transport;0.0097274660192203!GO:0030125;clathrin vesicle coat;0.00981473792405617!GO:0030665;clathrin coated vesicle membrane;0.00981473792405617!GO:0006497;protein amino acid lipidation;0.00981569635268577!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00985047630083458!GO:0016272;prefoldin complex;0.00997802699169695!GO:0019206;nucleoside kinase activity;0.0103447187174183!GO:0051348;negative regulation of transferase activity;0.0105761570620235!GO:0007088;regulation of mitosis;0.0107529022867046!GO:0006950;response to stress;0.0108298737717807!GO:0006289;nucleotide-excision repair;0.0109221321227935!GO:0031543;peptidyl-proline dioxygenase activity;0.0109792345165653!GO:0030659;cytoplasmic vesicle membrane;0.0110586612891035!GO:0005862;muscle thin filament tropomyosin;0.0110694137594736!GO:0008168;methyltransferase activity;0.0111569788423658!GO:0019318;hexose metabolic process;0.0111569788423658!GO:0006509;membrane protein ectodomain proteolysis;0.0114660058865024!GO:0033619;membrane protein proteolysis;0.0114660058865024!GO:0006401;RNA catabolic process;0.0114741709791976!GO:0045045;secretory pathway;0.0116747314633397!GO:0043433;negative regulation of transcription factor activity;0.0117790244043774!GO:0051287;NAD binding;0.0117916313633485!GO:0007033;vacuole organization and biogenesis;0.0118044960017916!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0119540564320252!GO:0016741;transferase activity, transferring one-carbon groups;0.0119716261658383!GO:0000049;tRNA binding;0.0122543055180601!GO:0030027;lamellipodium;0.0123535584705661!GO:0005832;chaperonin-containing T-complex;0.0126739864362222!GO:0005996;monosaccharide metabolic process;0.0132538387536966!GO:0006402;mRNA catabolic process;0.0132538387536966!GO:0006220;pyrimidine nucleotide metabolic process;0.0136326036251984!GO:0003678;DNA helicase activity;0.0138673719336008!GO:0032508;DNA duplex unwinding;0.0142754086063208!GO:0032392;DNA geometric change;0.0142754086063208!GO:0031124;mRNA 3'-end processing;0.0145457975909929!GO:0019798;procollagen-proline dioxygenase activity;0.0147223325063725!GO:0008312;7S RNA binding;0.014729162328084!GO:0030119;AP-type membrane coat adaptor complex;0.0148345050971842!GO:0006807;nitrogen compound metabolic process;0.0152847815984704!GO:0005637;nuclear inner membrane;0.0153270111101681!GO:0007021;tubulin folding;0.0159286903353046!GO:0008652;amino acid biosynthetic process;0.016579962209824!GO:0009112;nucleobase metabolic process;0.0165924947410274!GO:0031529;ruffle organization and biogenesis;0.017086803985217!GO:0003682;chromatin binding;0.0175944222455687!GO:0050178;phenylpyruvate tautomerase activity;0.0179946522404016!GO:0006458;'de novo' protein folding;0.0181493867327667!GO:0051084;'de novo' posttranslational protein folding;0.0181493867327667!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0185256042733441!GO:0000096;sulfur amino acid metabolic process;0.0185363117517943!GO:0005774;vacuolar membrane;0.0185916385199852!GO:0035258;steroid hormone receptor binding;0.0186238566868089!GO:0009303;rRNA transcription;0.0186305424572781!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0186591190319731!GO:0045047;protein targeting to ER;0.0186591190319731!GO:0006284;base-excision repair;0.0187039168217781!GO:0016301;kinase activity;0.0188505139137405!GO:0005100;Rho GTPase activator activity;0.0188924733491418!GO:0043022;ribosome binding;0.0190800935309277!GO:0042326;negative regulation of phosphorylation;0.0194170710124953!GO:0046519;sphingoid metabolic process;0.019900625135536!GO:0006783;heme biosynthetic process;0.0200132823855259!GO:0030041;actin filament polymerization;0.0208464234471352!GO:0048037;cofactor binding;0.0211604614566335!GO:0045893;positive regulation of transcription, DNA-dependent;0.0214047081590424!GO:0046365;monosaccharide catabolic process;0.021641835427055!GO:0030131;clathrin adaptor complex;0.0219608620834312!GO:0044433;cytoplasmic vesicle part;0.0220029164835919!GO:0003756;protein disulfide isomerase activity;0.0220029164835919!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0220029164835919!GO:0005975;carbohydrate metabolic process;0.0222141410674994!GO:0048468;cell development;0.0225461080039535!GO:0008538;proteasome activator activity;0.0225892981956693!GO:0006611;protein export from nucleus;0.0229919848308175!GO:0006650;glycerophospholipid metabolic process;0.023586424953319!GO:0043596;nuclear replication fork;0.0236806971083424!GO:0030145;manganese ion binding;0.023724008685923!GO:0006739;NADP metabolic process;0.0238718073314163!GO:0004527;exonuclease activity;0.0239270791781382!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0241636016919718!GO:0009116;nucleoside metabolic process;0.0243554528885108!GO:0006066;alcohol metabolic process;0.0243554528885108!GO:0016408;C-acyltransferase activity;0.0244218453567997!GO:0007346;regulation of progression through mitotic cell cycle;0.0244578546602064!GO:0030433;ER-associated protein catabolic process;0.0248320544938153!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0248320544938153!GO:0046426;negative regulation of JAK-STAT cascade;0.0248924058397188!GO:0008154;actin polymerization and/or depolymerization;0.0250171342960707!GO:0048518;positive regulation of biological process;0.0250191280557905!GO:0008637;apoptotic mitochondrial changes;0.0252597337498869!GO:0030496;midbody;0.0253900606605026!GO:0006268;DNA unwinding during replication;0.0255457785176817!GO:0022415;viral reproductive process;0.0257836772990122!GO:0004518;nuclease activity;0.0260957774682537!GO:0009308;amine metabolic process;0.0267968368945775!GO:0050790;regulation of catalytic activity;0.0268158800723715!GO:0045926;negative regulation of growth;0.0270453326569777!GO:0006354;RNA elongation;0.0271105699166891!GO:0006096;glycolysis;0.0272552105040598!GO:0043189;H4/H2A histone acetyltransferase complex;0.0273598026717849!GO:0004003;ATP-dependent DNA helicase activity;0.0282945795200919!GO:0006144;purine base metabolic process;0.028326187636669!GO:0008022;protein C-terminus binding;0.028326187636669!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.028326187636669!GO:0006506;GPI anchor biosynthetic process;0.0286117645822777!GO:0006672;ceramide metabolic process;0.0287486177737094!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0287486177737094!GO:0010257;NADH dehydrogenase complex assembly;0.0287486177737094!GO:0033108;mitochondrial respiratory chain complex assembly;0.0287486177737094!GO:0006302;double-strand break repair;0.0291801993597168!GO:0042158;lipoprotein biosynthetic process;0.0293893578262061!GO:0006352;transcription initiation;0.0296018397788197!GO:0000339;RNA cap binding;0.0296188868139553!GO:0030521;androgen receptor signaling pathway;0.0296294003005969!GO:0045334;clathrin-coated endocytic vesicle;0.0297108680719389!GO:0004674;protein serine/threonine kinase activity;0.0301163426976991!GO:0031272;regulation of pseudopodium formation;0.0301163426976991!GO:0031269;pseudopodium formation;0.0301163426976991!GO:0031344;regulation of cell projection organization and biogenesis;0.0301163426976991!GO:0031268;pseudopodium organization and biogenesis;0.0301163426976991!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0301163426976991!GO:0031274;positive regulation of pseudopodium formation;0.0301163426976991!GO:0003690;double-stranded DNA binding;0.0303356335335851!GO:0006984;ER-nuclear signaling pathway;0.0304908206149434!GO:0016860;intramolecular oxidoreductase activity;0.0317054924347551!GO:0019320;hexose catabolic process;0.0317054924347551!GO:0005758;mitochondrial intermembrane space;0.0318768236973008!GO:0006405;RNA export from nucleus;0.0320436574621144!GO:0005876;spindle microtubule;0.0323285470580921!GO:0005092;GDP-dissociation inhibitor activity;0.033431635020268!GO:0031300;intrinsic to organelle membrane;0.033431635020268!GO:0000287;magnesium ion binding;0.0343883046449736!GO:0000030;mannosyltransferase activity;0.0347607504623236!GO:0035267;NuA4 histone acetyltransferase complex;0.0350119632436153!GO:0031970;organelle envelope lumen;0.0353279557180275!GO:0006376;mRNA splice site selection;0.035338362949359!GO:0000389;nuclear mRNA 3'-splice site recognition;0.035338362949359!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0359950272426147!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0359950272426147!GO:0001726;ruffle;0.0360830136045115!GO:0006378;mRNA polyadenylation;0.0362135891147545!GO:0006519;amino acid and derivative metabolic process;0.0367891283520261!GO:0000910;cytokinesis;0.0373462315239906!GO:0044437;vacuolar part;0.0373674477783614!GO:0006505;GPI anchor metabolic process;0.0378171832041518!GO:0030128;clathrin coat of endocytic vesicle;0.0380041409799449!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0380041409799449!GO:0030122;AP-2 adaptor complex;0.0380041409799449!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0380054437262039!GO:0046164;alcohol catabolic process;0.03816263447514!GO:0006733;oxidoreduction coenzyme metabolic process;0.0388165543515495!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0390827230104966!GO:0008147;structural constituent of bone;0.0398118163285529!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0405333961316891!GO:0030508;thiol-disulfide exchange intermediate activity;0.0411535481576436!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0417349521442048!GO:0007093;mitotic cell cycle checkpoint;0.0420123169388106!GO:0043130;ubiquitin binding;0.0424738437442687!GO:0032182;small conjugating protein binding;0.0424738437442687!GO:0030032;lamellipodium biogenesis;0.0424958568982995!GO:0033559;unsaturated fatty acid metabolic process;0.0427991272057097!GO:0006636;unsaturated fatty acid biosynthetic process;0.0427991272057097!GO:0051098;regulation of binding;0.0428086314974464!GO:0030911;TPR domain binding;0.0432957375901321!GO:0051085;chaperone cofactor-dependent protein folding;0.0434807255480689!GO:0051128;regulation of cellular component organization and biogenesis;0.0436737947976766!GO:0043086;negative regulation of catalytic activity;0.0446054423034285!GO:0001666;response to hypoxia;0.0449901060250195!GO:0022408;negative regulation of cell-cell adhesion;0.0450782097854212!GO:0003779;actin binding;0.0453727413688803!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0453727413688803!GO:0005765;lysosomal membrane;0.0458047289763871!GO:0000209;protein polyubiquitination;0.0461563987737599!GO:0006892;post-Golgi vesicle-mediated transport;0.0465775239441562!GO:0051059;NF-kappaB binding;0.0470713090155352!GO:0006730;one-carbon compound metabolic process;0.0475827221810319!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0478496405092279!GO:0009967;positive regulation of signal transduction;0.0479668249885744!GO:0006790;sulfur metabolic process;0.0480593470005679!GO:0000178;exosome (RNase complex);0.0495771808385258!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0496796628642929!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0496796628642929!GO:0004532;exoribonuclease activity;0.0498926823325812!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0498926823325812!GO:0035035;histone acetyltransferase binding;0.0499304519450449 | |||
|sample_id=11439 | |sample_id=11439 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical artery | |sample_tissue=umbilical artery | ||
|top_motifs=GTF2A1,2:1.64561992467;IKZF1:1.54853436868;EBF1:1.24076523084;HOX{A5,B5}:1.21533084278;ZIC1..3:1.1311753279;XCPE1{core}:1.12360004465;GCM1,2:1.10211299023;SRF:1.07384905309;HAND1,2:1.05212266388;PBX1:1.0349468263;PPARG:0.929897300965;NFE2L1:0.901622588903;TFAP2{A,C}:0.898009798611;GLI1..3:0.890194422488;ZNF148:0.862931831516;RXRA_VDR{dimer}:0.861809432902;ZBTB6:0.836102281339;NR5A1,2:0.794938868375;ZNF238:0.792350786509;TFAP4:0.789114886372;TLX1..3_NFIC{dimer}:0.732347404079;EN1,2:0.7061557282;UFEwm:0.690362912779;HES1:0.683867632067;SOX{8,9,10}:0.676228328674;POU2F1..3:0.671887083195;TP53:0.63559746702;NR3C1:0.614041969958;GZF1:0.605571315175;GFI1B:0.605249909866;HMX1:0.595959092197;TEAD1:0.593915542205;HSF1,2:0.562189406369;RXR{A,B,G}:0.560411788626;TFCP2:0.551945578646;POU3F1..4:0.545071751151;HIF1A:0.54488247427;TBP:0.523928273838;KLF4:0.519482483672;NANOG{mouse}:0.507752045508;TAL1_TCF{3,4,12}:0.456218920066;ELK1,4_GABP{A,B1}:0.41263717997;ALX4:0.407697741958;PAX8:0.402778845189;ESR1:0.38980146021;TFAP2B:0.384023868294;BACH2:0.372523563045;LHX3,4:0.369922579199;MYBL2:0.363983720023;NFATC1..3:0.351595913744;REST:0.34789695048;NFE2L2:0.334668320437;GFI1:0.320945231929;ONECUT1,2:0.312770121692;YY1:0.287543508728;XBP1:0.286501835504;GTF2I:0.260194381035;ATF6:0.257886633432;PAX1,9:0.255544067403;SMAD1..7,9:0.252395740123;FOXL1:0.232481285726;FOSL2:0.230585320067;MAFB:0.224542486937;CDC5L:0.211716958025;HIC1:0.201539525151;LEF1_TCF7_TCF7L1,2:0.20135227797;FOS_FOS{B,L1}_JUN{B,D}:0.183280507364;AR:0.177681258659;SOX17:0.167565328037;ESRRA:0.162617759511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159460218463;ZNF423:0.155902597543;MTE{core}:0.147830203782;CRX:0.131859178669;E2F1..5:0.130416816742;TFDP1:0.125254977215;HNF1A:0.100990373221;bHLH_family:0.096084624464;SPZ1:0.0771993000618;AHR_ARNT_ARNT2:0.0625959211796;VSX1,2:0.0615270319595;ADNP_IRX_SIX_ZHX:0.0586953684746;TOPORS:0.057113571612;HLF:0.0180906355873;NFY{A,B,C}:0.0097979209944;NKX2-2,8:0.00467080083045;SOX2:0.00186957752005;NFE2:-0.0332586098276;NHLH1,2:-0.0333854403668;ZNF143:-0.043850848294;OCT4_SOX2{dimer}:-0.0616174991595;MZF1:-0.0702329298985;GATA6:-0.0716316117647;POU6F1:-0.0778172184451;MEF2{A,B,C,D}:-0.0784266803889;GATA4:-0.0880233686527;HNF4A_NR2F1,2:-0.114981373079;NR6A1:-0.115772877062;CEBPA,B_DDIT3:-0.123689387968;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.125606971816;MYB:-0.131794766232;PAX3,7:-0.143620415348;SP1:-0.148695153055;PRDM1:-0.151907349734;PATZ1:-0.157885842349;FOX{I1,J2}:-0.167700130487;PAX5:-0.168377682677;ZNF384:-0.172100931678;NFKB1_REL_RELA:-0.173768286372;RFX1:-0.201009814892;RUNX1..3:-0.211639595151;POU1F1:-0.213143765774;PAX6:-0.216211330188;DBP:-0.221239590949;EGR1..3:-0.239887469946;MAZ:-0.244996511376;ETS1,2:-0.254087136004;RREB1:-0.255164938609;STAT2,4,6:-0.255287122647;DMAP1_NCOR{1,2}_SMARC:-0.256365330654;LMO2:-0.273507935934;NRF1:-0.315537320329;NKX3-2:-0.318428698845;STAT5{A,B}:-0.332205201265;MYOD1:-0.332566237098;MTF1:-0.335782596043;TBX4,5:-0.353238829002;ELF1,2,4:-0.357013222061;JUN:-0.365886426054;SPIB:-0.379735492371;PITX1..3:-0.390188866494;PRRX1,2:-0.431363951537;EVI1:-0.439490142157;MYFfamily:-0.453963059473;ARID5B:-0.467504640433;SPI1:-0.481756655431;NKX2-3_NKX2-5:-0.500905558388;MED-1{core}:-0.503830877871;HMGA1,2:-0.504600171589;PAX2:-0.506801317286;FOXQ1:-0.519273957228;ZEB1:-0.525506096291;NR1H4:-0.527129977658;POU5F1:-0.534373563531;HOXA9_MEIS1:-0.539928925535;T:-0.543077926205;ZFP161:-0.548600313974;TLX2:-0.57387195748;PAX4:-0.5774137217;NFIX:-0.584414394157;SNAI1..3:-0.597885671249;HOX{A6,A7,B6,B7}:-0.613702995732;TEF:-0.627527393899;HBP1_HMGB_SSRP1_UBTF:-0.633842226822;BREu{core}:-0.633850081178;ALX1:-0.642746922168;NKX2-1,4:-0.646655092433;NKX3-1:-0.661473110345;AIRE:-0.661805438974;HOX{A4,D4}:-0.682192532411;FOX{F1,F2,J1}:-0.708515207199;NANOG:-0.714332366008;CREB1:-0.72099329829;ATF2:-0.738180604676;EP300:-0.740765057228;NFIL3:-0.749496538034;RFX2..5_RFXANK_RFXAP:-0.755349166998;NKX6-1,2:-0.7610250715;ATF5_CREB3:-0.762853019323;CUX2:-0.819156215745;FOXD3:-0.836482371737;RORA:-0.846761676645;IRF1,2:-0.896714180206;TGIF1:-0.908246421069;FOXP1:-0.921997137422;FOXM1:-0.924551840977;ATF4:-0.947827591713;SOX5:-0.971346635885;IRF7:-1.05786427913;STAT1,3:-1.05901112064;FOX{D1,D2}:-1.1200739815;FOXP3:-1.20384326971;IKZF2:-1.23138121073;FOXA2:-1.25415018077;FOXO1,3,4:-1.28726891777;ZBTB16:-1.387005763;CDX1,2,4:-1.43184633053;SREBF1,2:-1.45131629443;BPTF:-1.49060367067;FOXN1:-1.67110552204;PDX1:-1.67605021299;RBPJ:-1.76404489825 | |top_motifs=GTF2A1,2:1.64561992467;IKZF1:1.54853436868;EBF1:1.24076523084;HOX{A5,B5}:1.21533084278;ZIC1..3:1.1311753279;XCPE1{core}:1.12360004465;GCM1,2:1.10211299023;SRF:1.07384905309;HAND1,2:1.05212266388;PBX1:1.0349468263;PPARG:0.929897300965;NFE2L1:0.901622588903;TFAP2{A,C}:0.898009798611;GLI1..3:0.890194422488;ZNF148:0.862931831516;RXRA_VDR{dimer}:0.861809432902;ZBTB6:0.836102281339;NR5A1,2:0.794938868375;ZNF238:0.792350786509;TFAP4:0.789114886372;TLX1..3_NFIC{dimer}:0.732347404079;EN1,2:0.7061557282;UFEwm:0.690362912779;HES1:0.683867632067;SOX{8,9,10}:0.676228328674;POU2F1..3:0.671887083195;TP53:0.63559746702;NR3C1:0.614041969958;GZF1:0.605571315175;GFI1B:0.605249909866;HMX1:0.595959092197;TEAD1:0.593915542205;HSF1,2:0.562189406369;RXR{A,B,G}:0.560411788626;TFCP2:0.551945578646;POU3F1..4:0.545071751151;HIF1A:0.54488247427;TBP:0.523928273838;KLF4:0.519482483672;NANOG{mouse}:0.507752045508;TAL1_TCF{3,4,12}:0.456218920066;ELK1,4_GABP{A,B1}:0.41263717997;ALX4:0.407697741958;PAX8:0.402778845189;ESR1:0.38980146021;TFAP2B:0.384023868294;BACH2:0.372523563045;LHX3,4:0.369922579199;MYBL2:0.363983720023;NFATC1..3:0.351595913744;REST:0.34789695048;NFE2L2:0.334668320437;GFI1:0.320945231929;ONECUT1,2:0.312770121692;YY1:0.287543508728;XBP1:0.286501835504;GTF2I:0.260194381035;ATF6:0.257886633432;PAX1,9:0.255544067403;SMAD1..7,9:0.252395740123;FOXL1:0.232481285726;FOSL2:0.230585320067;MAFB:0.224542486937;CDC5L:0.211716958025;HIC1:0.201539525151;LEF1_TCF7_TCF7L1,2:0.20135227797;FOS_FOS{B,L1}_JUN{B,D}:0.183280507364;AR:0.177681258659;SOX17:0.167565328037;ESRRA:0.162617759511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159460218463;ZNF423:0.155902597543;MTE{core}:0.147830203782;CRX:0.131859178669;E2F1..5:0.130416816742;TFDP1:0.125254977215;HNF1A:0.100990373221;bHLH_family:0.096084624464;SPZ1:0.0771993000618;AHR_ARNT_ARNT2:0.0625959211796;VSX1,2:0.0615270319595;ADNP_IRX_SIX_ZHX:0.0586953684746;TOPORS:0.057113571612;HLF:0.0180906355873;NFY{A,B,C}:0.0097979209944;NKX2-2,8:0.00467080083045;SOX2:0.00186957752005;NFE2:-0.0332586098276;NHLH1,2:-0.0333854403668;ZNF143:-0.043850848294;OCT4_SOX2{dimer}:-0.0616174991595;MZF1:-0.0702329298985;GATA6:-0.0716316117647;POU6F1:-0.0778172184451;MEF2{A,B,C,D}:-0.0784266803889;GATA4:-0.0880233686527;HNF4A_NR2F1,2:-0.114981373079;NR6A1:-0.115772877062;CEBPA,B_DDIT3:-0.123689387968;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.125606971816;MYB:-0.131794766232;PAX3,7:-0.143620415348;SP1:-0.148695153055;PRDM1:-0.151907349734;PATZ1:-0.157885842349;FOX{I1,J2}:-0.167700130487;PAX5:-0.168377682677;ZNF384:-0.172100931678;NFKB1_REL_RELA:-0.173768286372;RFX1:-0.201009814892;RUNX1..3:-0.211639595151;POU1F1:-0.213143765774;PAX6:-0.216211330188;DBP:-0.221239590949;EGR1..3:-0.239887469946;MAZ:-0.244996511376;ETS1,2:-0.254087136004;RREB1:-0.255164938609;STAT2,4,6:-0.255287122647;DMAP1_NCOR{1,2}_SMARC:-0.256365330654;LMO2:-0.273507935934;NRF1:-0.315537320329;NKX3-2:-0.318428698845;STAT5{A,B}:-0.332205201265;MYOD1:-0.332566237098;MTF1:-0.335782596043;TBX4,5:-0.353238829002;ELF1,2,4:-0.357013222061;JUN:-0.365886426054;SPIB:-0.379735492371;PITX1..3:-0.390188866494;PRRX1,2:-0.431363951537;EVI1:-0.439490142157;MYFfamily:-0.453963059473;ARID5B:-0.467504640433;SPI1:-0.481756655431;NKX2-3_NKX2-5:-0.500905558388;MED-1{core}:-0.503830877871;HMGA1,2:-0.504600171589;PAX2:-0.506801317286;FOXQ1:-0.519273957228;ZEB1:-0.525506096291;NR1H4:-0.527129977658;POU5F1:-0.534373563531;HOXA9_MEIS1:-0.539928925535;T:-0.543077926205;ZFP161:-0.548600313974;TLX2:-0.57387195748;PAX4:-0.5774137217;NFIX:-0.584414394157;SNAI1..3:-0.597885671249;HOX{A6,A7,B6,B7}:-0.613702995732;TEF:-0.627527393899;HBP1_HMGB_SSRP1_UBTF:-0.633842226822;BREu{core}:-0.633850081178;ALX1:-0.642746922168;NKX2-1,4:-0.646655092433;NKX3-1:-0.661473110345;AIRE:-0.661805438974;HOX{A4,D4}:-0.682192532411;FOX{F1,F2,J1}:-0.708515207199;NANOG:-0.714332366008;CREB1:-0.72099329829;ATF2:-0.738180604676;EP300:-0.740765057228;NFIL3:-0.749496538034;RFX2..5_RFXANK_RFXAP:-0.755349166998;NKX6-1,2:-0.7610250715;ATF5_CREB3:-0.762853019323;CUX2:-0.819156215745;FOXD3:-0.836482371737;RORA:-0.846761676645;IRF1,2:-0.896714180206;TGIF1:-0.908246421069;FOXP1:-0.921997137422;FOXM1:-0.924551840977;ATF4:-0.947827591713;SOX5:-0.971346635885;IRF7:-1.05786427913;STAT1,3:-1.05901112064;FOX{D1,D2}:-1.1200739815;FOXP3:-1.20384326971;IKZF2:-1.23138121073;FOXA2:-1.25415018077;FOXO1,3,4:-1.28726891777;ZBTB16:-1.387005763;CDX1,2,4:-1.43184633053;SREBF1,2:-1.45131629443;BPTF:-1.49060367067;FOXN1:-1.67110552204;PDX1:-1.67605021299;RBPJ:-1.76404489825 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11439-118H8;search_select_hide=table117:FF:11439-118H8 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Umbilical Artery, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12049 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12049
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12049
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.744 |
| 10 | 10 | 0.476 |
| 100 | 100 | 0.415 |
| 101 | 101 | 0.0651 |
| 102 | 102 | 0.798 |
| 103 | 103 | 0.412 |
| 104 | 104 | 0.294 |
| 105 | 105 | 0.801 |
| 106 | 106 | 0.13 |
| 107 | 107 | 0.0217 |
| 108 | 108 | 0.973 |
| 109 | 109 | 0.0232 |
| 11 | 11 | 0.0633 |
| 110 | 110 | 0.0879 |
| 111 | 111 | 0.639 |
| 112 | 112 | 0.432 |
| 113 | 113 | 0.0311 |
| 114 | 114 | 0.868 |
| 115 | 115 | 0.02 |
| 116 | 116 | 0.0169 |
| 117 | 117 | 0.42 |
| 118 | 118 | 0.943 |
| 119 | 119 | 0.499 |
| 12 | 12 | 0.683 |
| 120 | 120 | 0.0492 |
| 121 | 121 | 0.436 |
| 122 | 122 | 0.731 |
| 123 | 123 | 0.0202 |
| 124 | 124 | 0.465 |
| 125 | 125 | 0.84 |
| 126 | 126 | 0.959 |
| 127 | 127 | 0.796 |
| 128 | 128 | 0.352 |
| 129 | 129 | 0.589 |
| 13 | 13 | 0.674 |
| 130 | 130 | 0.478 |
| 131 | 131 | 0.441 |
| 132 | 132 | 0.348 |
| 133 | 133 | 0.713 |
| 134 | 134 | 0.284 |
| 135 | 135 | 0.509 |
| 136 | 136 | 0.447 |
| 137 | 137 | 0.0723 |
| 138 | 138 | 0.382 |
| 139 | 139 | 0.878 |
| 14 | 14 | 0.354 |
| 140 | 140 | 0.712 |
| 141 | 141 | 0.57 |
| 142 | 142 | 0.567 |
| 143 | 143 | 0.00845 |
| 144 | 144 | 0.729 |
| 145 | 145 | 0.45 |
| 146 | 146 | 0.672 |
| 147 | 147 | 0.0611 |
| 148 | 148 | 0.362 |
| 149 | 149 | 0.0383 |
| 15 | 15 | 0.662 |
| 150 | 150 | 0.0753 |
| 151 | 151 | 0.919 |
| 152 | 152 | 0.0427 |
| 153 | 153 | 0.399 |
| 154 | 154 | 0.26 |
| 155 | 155 | 0.1 |
| 156 | 156 | 0.934 |
| 157 | 157 | 0.143 |
| 158 | 158 | 0.0157 |
| 159 | 159 | 0.415 |
| 16 | 16 | 0.163 |
| 160 | 160 | 0.017 |
| 161 | 161 | 0.371 |
| 162 | 162 | 0.169 |
| 163 | 163 | 0.928 |
| 164 | 164 | 0.711 |
| 165 | 165 | 0.321 |
| 166 | 166 | 0.37 |
| 167 | 167 | 0.328 |
| 168 | 168 | 0.963 |
| 169 | 169 | 0.0848 |
| 17 | 17 | 0.16 |
| 18 | 18 | 0.368 |
| 19 | 19 | 0.0808 |
| 2 | 2 | 0.236 |
| 20 | 20 | 0.464 |
| 21 | 21 | 0.648 |
| 22 | 22 | 0.186 |
| 23 | 23 | 0.476 |
| 24 | 24 | 0.318 |
| 25 | 25 | 0.513 |
| 26 | 26 | 0.225 |
| 27 | 27 | 0.345 |
| 28 | 28 | 0.166 |
| 29 | 29 | 0.473 |
| 3 | 3 | 0.635 |
| 30 | 30 | 0.233 |
| 31 | 31 | 0.577 |
| 32 | 32 | 2.88729e-7 |
| 33 | 33 | 0.753 |
| 34 | 34 | 0.236 |
| 35 | 35 | 0.79 |
| 36 | 36 | 0.735 |
| 37 | 37 | 0.0795 |
| 38 | 38 | 0.96 |
| 39 | 39 | 0.257 |
| 4 | 4 | 0.524 |
| 40 | 40 | 0.0766 |
| 41 | 41 | 0.776 |
| 42 | 42 | 0.86 |
| 43 | 43 | 0.669 |
| 44 | 44 | 0.1 |
| 45 | 45 | 0.487 |
| 46 | 46 | 0.169 |
| 47 | 47 | 0.475 |
| 48 | 48 | 0.136 |
| 49 | 49 | 0.725 |
| 5 | 5 | 0.556 |
| 50 | 50 | 0.386 |
| 51 | 51 | 0.986 |
| 52 | 52 | 0.867 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.992 |
| 55 | 55 | 0.702 |
| 56 | 56 | 0.497 |
| 57 | 57 | 0.878 |
| 58 | 58 | 0.327 |
| 59 | 59 | 0.0223 |
| 6 | 6 | 0.996 |
| 60 | 60 | 0.806 |
| 61 | 61 | 0.599 |
| 62 | 62 | 0.707 |
| 63 | 63 | 0.333 |
| 64 | 64 | 0.167 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.445 |
| 67 | 67 | 0.905 |
| 68 | 68 | 0.00584 |
| 69 | 69 | 0.377 |
| 7 | 7 | 0.744 |
| 70 | 70 | 0.973 |
| 71 | 71 | 0.546 |
| 72 | 72 | 0.317 |
| 73 | 73 | 0.00859 |
| 74 | 74 | 0.224 |
| 75 | 75 | 0.394 |
| 76 | 76 | 0.207 |
| 77 | 77 | 0.0108 |
| 78 | 78 | 0.746 |
| 79 | 79 | 0.0061 |
| 8 | 8 | 0.0479 |
| 80 | 80 | 0.933 |
| 81 | 81 | 0.934 |
| 82 | 82 | 0.694 |
| 83 | 83 | 0.749 |
| 84 | 84 | 0.742 |
| 85 | 85 | 0.845 |
| 86 | 86 | 0.872 |
| 87 | 87 | 0.0129 |
| 88 | 88 | 0.159 |
| 89 | 89 | 0.367 |
| 9 | 9 | 0.291 |
| 90 | 90 | 0.0759 |
| 91 | 91 | 0.827 |
| 92 | 92 | 0.777 |
| 93 | 93 | 0.595 |
| 94 | 94 | 0.851 |
| 95 | 95 | 0.0611 |
| 96 | 96 | 0.594 |
| 97 | 97 | 0.928 |
| 98 | 98 | 0.987 |
| 99 | 99 | 3.31206e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12049
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000176 human smooth muscle cell of umbilical artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
