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(Created page with "{{f5samples |id=FF:11439-118H8 |name=Smooth Muscle Cells - Umbilical Artery, donor3 |sample_id=11439 |rna_tube_id=118H8 |rna_box=118 |rna_position=H8 |sample_cell_lot=N...")
 
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{{f5samples
{{f5samples
|id=FF:11439-118H8
|DRA_sample_Accession=CAGE@SAMD00005184
|name=Smooth Muscle Cells - Umbilical Artery, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005184
|sample_id=11439
|accession_numbers=CAGE;DRX008509;DRR009381;DRZ000806;DRZ002191;DRZ012156;DRZ013541
|rna_tube_id=118H8
|accession_numbers_RNASeq=sRNA-Seq;DRX037233;DRR041599;DRZ007241
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=H8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1447.00000
|rna_catalog_number=CA252-R10n
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=infant
|sample_tissue=umbilical artery
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=Neonatal
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs12049,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002594
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001310,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004572,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.99!97.75!SOX17;;chr4:174451370..174451387,-!p1@HAND2!1.73!52.96!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.24!ZBED1;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.03!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.45!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.24!42.82!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.97!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.19!14.37!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.18!414.66!HMGA1;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.87!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.31!PRDM8;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.24!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.34!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.28!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.83!HOXD11;;chr20:30433396..30433414,-!p1@FOXS1!1.11!11.83!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.68!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.06!10.42!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.05!10.14!GATA4;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.42!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.00!41.69!TOX2;;chr19:45260775..45260838,+!p5@BCL3!1.00!11.83!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.98!55.78!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.56!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.42!FOXF1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.58!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.41!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.44!FOXC2;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.35!ENO1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.24!TWIST2;;chr12:54378923..54378966,+!p1@HOXC10!0.92!7.32!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.92!7.32!HOXC10;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.04!MAFK;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.76!HOXC10;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.06!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.04!BNC1;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.44!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.92!HOXA11;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.92!TBX20;;chr1:8938709..8938720,-!p3@ENO1!0.83!299.16!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.92!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.48!DRAP1;;chr4:81105027..81105039,+!p3@PRDM8!0.81!6.48!PRDM8;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.75!TBX2;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.49!TWIST1;;chr2:5832508..5832524,+!p1@SOX11!0.80!5.35!SOX11;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.70!CREB3;;chr4:174451350..174451363,-!p3@HAND2!0.78!5.07!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!0.78!5.07!FOXC2;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.90!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.77!7.32!GATA6;;chr12:124873357..124873401,-!p1@NCOR2!0.76!60.28!NCOR2;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.79!RFX8;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.27!AEBP1;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.52!POU2F2;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!12.96!ARNTL2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.74!4.51!HOXA11;;chr17:59477197..59477212,+!p2@TBX2!0.73!7.89!TBX2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.13!TAX1BP3;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.35!PRDM8;;chr7:150945865..150945896,-!p4@SMARCD3!0.72!4.23!SMARCD3;;chr8:145159846..145159889,+!p6@MAF1!0.71!6.20!MAF1;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.61!AEBP1;;chr6:34204672..34204692,+!p1@HMGA1!0.68!492.69!HMGA1;;chr11:65667846..65667868,-!p1@FOSL1!0.68!115.21!FOSL1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.11!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.76!MLLT11;;chr5:134369905..134369972,-!p1@PITX1!0.68!6.20!PITX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.23!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.66!EBF3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.66!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.77!HHEX;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.76!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.63!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.52!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.10!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.35!HMGA2;;chr19:38720294..38720348,-!p1@DPF1!0.65!4.51!DPF1;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.51!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.23!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.38!RFX8;;chr4:111558135..111558198,-!p2@PITX2!0.64!3.38!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.30!TWIST1;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.83!TBX3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.77!ETV4;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.79!CREB3;;chr1:8926369..8926385,-!p12@ENO1!0.62!4.51!ENO1;;chr6:135502501..135502546,+!p1@MYB!0.62!3.94!MYB;;chr1:8938766..8938774,-!p2@ENO1!0.61!254.09!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.28!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.61!5.07!ETV4;;chr12:54366975..54367001,+!p1@HOXC11!0.61!3.10!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.10!HOXC10;;chr12:66218469..66218477,+!p16@HMGA2!0.61!3.10!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.10!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.60!3999.23!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.60!47.89!CREB3;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.38!SMAD3;;chr19:16435625..16435682,+!p1@KLF2!0.59!113.52!KLF2;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.86!MSX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.73!ZFPM2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr16:29819403..29819442,+!p5@MAZ!0.58!28.17!MAZ;;chr8:72756667..72756736,-!p2@MSC!0.58!4.79!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.82!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.82!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.58!2.82!HOXA9;;chr16:86600458..86600461,+!p3@FOXC2!0.58!2.82!FOXC2;;chr2:176969179..176969226,+!p2@HOXD11!0.58!2.82!HOXD11;;chr9:16705069..16705086,-!p3@BNC2!0.58!2.82!BNC2;;chr20:30433431..30433442,-!p2@FOXS1!0.58!2.82!FOXS1;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.04!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.57!6.20!MSC;;chr12:26277929..26277955,-!p3@BHLHE41!0.57!4.23!BHLHE41;;chr21:36260773..36260804,-!p7@RUNX1!0.57!3.94!RUNX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.41!MXD3;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.68!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.48!C11orf9;;chr7:137686763..137686784,-!p5@CREB3L2!0.56!5.07!CREB3L2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.79!MECOM;;chr6:126070769..126070801,+!p1@HEY2!0.56!3.10!HEY2;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.68!MYBL2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.78!TAX1BP3;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr15:67430351..67430366,+!p10@SMAD3!0.55!2.54!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.55!2.54!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.54!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.55!2.54!EN1;;chr3:25470156..25470227,+!p2@RARB!0.55!2.54!RARB;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.73!MAZ;;chr12:66218183..66218209,+!p4@HMGA2!0.53!5.35!HMGA2;;chr16:1429674..1429703,-!p3@UNKL!0.53!4.51!UNKL;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.94!ENO1;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.33!DRAP1;;chr8:37553292..37553317,+!p1@ZNF703!0.52!70.99!ZNF703;;chr12:27485785..27485816,+!p1@ARNTL2!0.52!20.28!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.86!FOXP1;;chr19:56152332..56152347,+!p4@ZNF580!0.52!6.20!ZNF580;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.38!BHLHE41;;chr20:32274179..32274213,-!p1@E2F1!0.51!18.87!E2F1;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.23!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.51!3.38!HOXB7;;chr20:50179368..50179392,-!p2@NFATC2!0.51!3.10!NFATC2;;chr1:170632137..170632172,+!p10@PRRX1!0.51!2.25!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.51!2.25!PRRX1;;chr16:86601088..86601105,+!p5@FOXC2!0.51!2.25!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.51!2.25!HOXB6;;chr12:54380112..54380126,+!p5@HOXC10!0.51!2.25!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.51!2.25!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.51!2.25!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.25!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.51!2.25!FOXG1;;chr8:55370720..55370733,+!p2@SOX17!0.51!2.25!SOX17;;chr5:321810..321877,+!p1@AHRR!0.50!8.45!AHRR;;chr18:19749517..19749531,+!p3@GATA6!0.50!4.51!GATA6;;chr17:41622834..41622883,-!p6@ETV4!0.50!2.82!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.50!2.54!MSC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.49!24.23!PPP1R13L;;chr20:42295713..42295738,+!p2@MYBL2!0.49!16.06!MYBL2;;chr12:53614115..53614154,-!p1@RARG!0.49!14.65!RARG;;chr15:96874145..96874166,+!p7@NR2F2!0.49!4.79!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.66!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.49!3.10!DRAP1;;chr1:151032833..151032850,+!p3@MLLT11!0.48!5.63!MLLT11;;chr2:121493425..121493474,+!p1@GLI2!0.48!5.35!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.48!3.38!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.82!AEBP1;;chr8:106330696..106330719,+!p2@ZFPM2!0.48!2.82!ZFPM2;;chr19:13213511..13213545,-!p2@LYL1!0.48!2.25!LYL1;;chr2:66662281..66662308,+!p1@MEIS1!0.47!8.73!MEIS1;;chr16:1429627..1429662,-!p2@UNKL!0.47!7.32!UNKL;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.66!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.47!2.82!TBX2;;chr15:80843484..80843499,+!p5@ARNT2!0.47!1.97!ARNT2;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr17:8027418..8027432,-!p1@HES7!0.47!1.97!HES7;;chr18:19749353..19749367,+!p4@GATA6!0.47!1.97!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.47!1.97!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.47!1.97!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.47!1.97!TBX3;;chr12:54366894..54366922,+!p2@HOXC11!0.47!1.97!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.47!1.97!HOXC11;;chr19:49865646..49865718,-!p1@TEAD2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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 43:
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|fonse_treatment_closure=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.ctss.bed.gz
|id=FF:11439-118H8
|is_a=EFO:0002091;;FF:0000176
|is_obsolete=
|library_id=CNhs12049
|library_id_phase_based=2:CNhs12049
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11439
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TAGCTT.11439
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11439
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TAGCTT.11439
|name=Smooth Muscle Cells - Umbilical Artery, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=CA252-R10n
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1447
|rna_od260/230=
|rna_od260/280=
|rna_position=H8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118H8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.TAGCTT
|sample_age=Neonatal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=infant
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.71610418069163e-230!GO:0005737;cytoplasm;8.90655749362452e-200!GO:0043226;organelle;1.39804408141129e-181!GO:0043229;intracellular organelle;2.15800226611447e-181!GO:0043231;intracellular membrane-bound organelle;9.27112503675715e-178!GO:0043227;membrane-bound organelle;2.50928969941568e-177!GO:0044444;cytoplasmic part;1.16037044063251e-145!GO:0044422;organelle part;9.26080990054967e-143!GO:0044446;intracellular organelle part;1.83167198174702e-141!GO:0032991;macromolecular complex;2.78229898523914e-100!GO:0030529;ribonucleoprotein complex;7.98531543966225e-86!GO:0044237;cellular metabolic process;1.10683420319348e-83!GO:0044238;primary metabolic process;5.66995777520492e-83!GO:0005515;protein binding;1.32559301823735e-77!GO:0005739;mitochondrion;2.38803115265434e-75!GO:0043170;macromolecule metabolic process;9.89372128564467e-74!GO:0043233;organelle lumen;1.14219730924943e-68!GO:0031974;membrane-enclosed lumen;1.14219730924943e-68!GO:0044428;nuclear part;2.90956312303876e-62!GO:0005634;nucleus;6.40910407370892e-60!GO:0003723;RNA binding;1.50147213151797e-58!GO:0005840;ribosome;6.19477116074341e-56!GO:0031090;organelle membrane;6.72007582770047e-54!GO:0043234;protein complex;4.64185087495367e-51!GO:0044429;mitochondrial part;7.07261538747355e-51!GO:0006412;translation;7.41439750947625e-51!GO:0019538;protein metabolic process;1.22025840980486e-50!GO:0003735;structural constituent of ribosome;2.85487484711061e-50!GO:0009058;biosynthetic process;1.84490128254152e-47!GO:0044260;cellular macromolecule metabolic process;2.73750228060086e-45!GO:0016043;cellular component organization and biogenesis;2.82318600174267e-45!GO:0044267;cellular protein metabolic process;1.1873486153997e-44!GO:0044249;cellular biosynthetic process;2.39993415939084e-44!GO:0031967;organelle envelope;2.94295654594592e-43!GO:0033279;ribosomal subunit;6.50856809909026e-43!GO:0031975;envelope;7.19756156130889e-43!GO:0009059;macromolecule biosynthetic process;2.4345420780243e-42!GO:0006396;RNA processing;4.47910439504454e-42!GO:0005829;cytosol;2.79746226185631e-40!GO:0015031;protein transport;1.1953161574258e-39!GO:0033036;macromolecule localization;4.50578752183877e-38!GO:0031981;nuclear lumen;8.18138387022803e-38!GO:0043283;biopolymer metabolic process;1.0602168395544e-36!GO:0045184;establishment of protein localization;3.33870660316462e-36!GO:0008104;protein localization;6.07593371972716e-36!GO:0005740;mitochondrial envelope;5.17960748897587e-34!GO:0043228;non-membrane-bound organelle;2.49514403117587e-33!GO:0043232;intracellular non-membrane-bound organelle;2.49514403117587e-33!GO:0006996;organelle organization and biogenesis;9.20733522445802e-33!GO:0031966;mitochondrial membrane;5.23741144707823e-32!GO:0046907;intracellular transport;5.31419724688828e-32!GO:0010467;gene expression;3.99986340644562e-31!GO:0019866;organelle inner membrane;8.83284712381728e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.83284712381728e-31!GO:0016071;mRNA metabolic process;1.36008379367636e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55623805798824e-30!GO:0005743;mitochondrial inner membrane;3.82346820592567e-29!GO:0008380;RNA splicing;8.56359235628703e-29!GO:0065003;macromolecular complex assembly;1.8922609503535e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.75783310477499e-28!GO:0006886;intracellular protein transport;5.17664779887168e-27!GO:0006397;mRNA processing;9.36918625026396e-27!GO:0022607;cellular component assembly;7.707737331346e-25!GO:0044445;cytosolic part;1.00691959653986e-24!GO:0006259;DNA metabolic process;2.9630857616674e-24!GO:0044455;mitochondrial membrane part;9.52063779635969e-24!GO:0006119;oxidative phosphorylation;1.85332639677165e-23!GO:0015934;large ribosomal subunit;4.45877452616249e-23!GO:0005654;nucleoplasm;4.01263116243671e-22!GO:0005681;spliceosome;1.08923540607704e-21!GO:0012505;endomembrane system;3.60622184978313e-21!GO:0005783;endoplasmic reticulum;4.99215587080286e-21!GO:0015935;small ribosomal subunit;6.86181288078234e-21!GO:0031980;mitochondrial lumen;1.00399358354402e-20!GO:0005759;mitochondrial matrix;1.00399358354402e-20!GO:0000166;nucleotide binding;1.20710247453747e-20!GO:0051649;establishment of cellular localization;2.44901687568161e-20!GO:0051641;cellular localization;3.55172114130279e-20!GO:0007049;cell cycle;5.33628920232044e-20!GO:0006457;protein folding;1.17173809536073e-19!GO:0005746;mitochondrial respiratory chain;3.27754123397388e-19!GO:0016462;pyrophosphatase activity;1.13408330692011e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.46092714690546e-18!GO:0044451;nucleoplasm part;2.10284419262602e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.1799476854502e-18!GO:0017111;nucleoside-triphosphatase activity;5.38166955604973e-18!GO:0044432;endoplasmic reticulum part;2.54463474703465e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.79364632508776e-17!GO:0005794;Golgi apparatus;5.38860797001064e-17!GO:0051186;cofactor metabolic process;5.6332110835438e-17!GO:0048770;pigment granule;7.05655013669729e-17!GO:0042470;melanosome;7.05655013669729e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.38161197057663e-16!GO:0003954;NADH dehydrogenase activity;1.38161197057663e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.38161197057663e-16!GO:0005730;nucleolus;1.42244410061623e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.83141055883563e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.46743405868421e-16!GO:0016874;ligase activity;6.05376364530944e-16!GO:0022402;cell cycle process;7.5402419891012e-16!GO:0000278;mitotic cell cycle;1.20310618130522e-15!GO:0005761;mitochondrial ribosome;1.3103007339343e-15!GO:0000313;organellar ribosome;1.3103007339343e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.59125278701584e-15!GO:0017076;purine nucleotide binding;7.89702164352255e-15!GO:0032553;ribonucleotide binding;7.90746234129858e-15!GO:0032555;purine ribonucleotide binding;7.90746234129858e-15!GO:0022618;protein-RNA complex assembly;7.90746234129858e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.10382505507644e-14!GO:0045271;respiratory chain complex I;1.10382505507644e-14!GO:0005747;mitochondrial respiratory chain complex I;1.10382505507644e-14!GO:0044265;cellular macromolecule catabolic process;1.1890902744402e-14!GO:0008134;transcription factor binding;1.24737846531534e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26242744659553e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.65291008250236e-14!GO:0042773;ATP synthesis coupled electron transport;1.65291008250236e-14!GO:0051082;unfolded protein binding;2.36776058939608e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.98168441378799e-14!GO:0003676;nucleic acid binding;4.41495249876424e-14!GO:0006605;protein targeting;5.1870781714518e-14!GO:0009057;macromolecule catabolic process;9.10671806113219e-14!GO:0048193;Golgi vesicle transport;9.62253123432934e-14!GO:0043285;biopolymer catabolic process;1.41565431609711e-13!GO:0042254;ribosome biogenesis and assembly;1.47330651690915e-13!GO:0006512;ubiquitin cycle;1.8629265248812e-13!GO:0008135;translation factor activity, nucleic acid binding;1.90154886303237e-13!GO:0009055;electron carrier activity;2.82672978649871e-13!GO:0044248;cellular catabolic process;4.06248823163242e-13!GO:0043412;biopolymer modification;6.2439382241127e-13!GO:0006732;coenzyme metabolic process;1.07656709822271e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36336779259701e-12!GO:0005524;ATP binding;1.63285371652731e-12!GO:0019941;modification-dependent protein catabolic process;1.95072075097962e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.95072075097962e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.36311222186718e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.64701360418444e-12!GO:0000375;RNA splicing, via transesterification reactions;2.64701360418444e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.64701360418444e-12!GO:0044257;cellular protein catabolic process;2.7050865808389e-12!GO:0032559;adenyl ribonucleotide binding;3.41775406645927e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.80225139526971e-12!GO:0030554;adenyl nucleotide binding;4.73412720706987e-12!GO:0005789;endoplasmic reticulum membrane;5.07235146081896e-12!GO:0006464;protein modification process;8.88505440428325e-12!GO:0016192;vesicle-mediated transport;9.7898149761785e-12!GO:0030163;protein catabolic process;1.32587112134861e-11!GO:0006974;response to DNA damage stimulus;1.33349644444024e-11!GO:0009259;ribonucleotide metabolic process;5.35132866189191e-11!GO:0005793;ER-Golgi intermediate compartment;6.7088750261242e-11!GO:0000087;M phase of mitotic cell cycle;6.98250829652473e-11!GO:0007067;mitosis;7.58457311602264e-11!GO:0005694;chromosome;8.91779878836942e-11!GO:0044427;chromosomal part;1.07618831390148e-10!GO:0006163;purine nucleotide metabolic process;1.1082188027203e-10!GO:0016070;RNA metabolic process;1.43747828088916e-10!GO:0005635;nuclear envelope;1.62379719083144e-10!GO:0006399;tRNA metabolic process;1.62379719083144e-10!GO:0022403;cell cycle phase;1.78959236150199e-10!GO:0006260;DNA replication;2.36385599778724e-10!GO:0003743;translation initiation factor activity;2.65494290554018e-10!GO:0009150;purine ribonucleotide metabolic process;3.0403511308197e-10!GO:0003712;transcription cofactor activity;4.055015827772e-10!GO:0051276;chromosome organization and biogenesis;4.16650642036715e-10!GO:0044453;nuclear membrane part;4.17568112321136e-10!GO:0016491;oxidoreductase activity;5.42377664707251e-10!GO:0012501;programmed cell death;5.42377664707251e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.95218887324744e-10!GO:0051726;regulation of cell cycle;6.11659289596089e-10!GO:0006164;purine nucleotide biosynthetic process;6.35944307011033e-10!GO:0000074;regulation of progression through cell cycle;7.65799915861726e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.22621333288011e-10!GO:0009260;ribonucleotide biosynthetic process;8.84919654731612e-10!GO:0006915;apoptosis;9.35722654704517e-10!GO:0031965;nuclear membrane;9.46308347397724e-10!GO:0006281;DNA repair;9.78965252609447e-10!GO:0048523;negative regulation of cellular process;1.71146744781356e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.71146744781356e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.16591084524184e-09!GO:0009141;nucleoside triphosphate metabolic process;2.20068945925481e-09!GO:0006913;nucleocytoplasmic transport;2.31384676658839e-09!GO:0006323;DNA packaging;2.46278897507383e-09!GO:0006364;rRNA processing;2.72024922681925e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.74952339274642e-09!GO:0043687;post-translational protein modification;3.13626820637414e-09!GO:0006413;translational initiation;3.53733488558178e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73749954482123e-09!GO:0051169;nuclear transport;4.89792377405527e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.1832784672318e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.1832784672318e-09!GO:0042623;ATPase activity, coupled;5.38458494630282e-09!GO:0065004;protein-DNA complex assembly;6.0386249654719e-09!GO:0051301;cell division;6.30778839501702e-09!GO:0016072;rRNA metabolic process;6.94396061318867e-09!GO:0051188;cofactor biosynthetic process;6.98514411154549e-09!GO:0016887;ATPase activity;8.30346400775224e-09!GO:0009060;aerobic respiration;8.60403180130361e-09!GO:0009719;response to endogenous stimulus;9.99106467866849e-09!GO:0008219;cell death;1.0737150139259e-08!GO:0016265;death;1.0737150139259e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.42355048075945e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.42355048075945e-08!GO:0008565;protein transporter activity;1.43809150099278e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.52144969307946e-08!GO:0044431;Golgi apparatus part;1.59134504231981e-08!GO:0006446;regulation of translational initiation;1.62312364273147e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.99147631829675e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.99147631829675e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.99147631829675e-08!GO:0016740;transferase activity;2.03028855795781e-08!GO:0015986;ATP synthesis coupled proton transport;2.46481043834705e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.46481043834705e-08!GO:0005643;nuclear pore;2.68348090673307e-08!GO:0008639;small protein conjugating enzyme activity;2.97483885036848e-08!GO:0016604;nuclear body;3.04502303906447e-08!GO:0030120;vesicle coat;3.13576606233807e-08!GO:0030662;coated vesicle membrane;3.13576606233807e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.42174978266702e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.42174978266702e-08!GO:0048519;negative regulation of biological process;3.65123323049221e-08!GO:0006334;nucleosome assembly;3.66746813388306e-08!GO:0006333;chromatin assembly or disassembly;4.2123289882337e-08!GO:0017038;protein import;4.27694298329272e-08!GO:0065002;intracellular protein transport across a membrane;4.34352702216325e-08!GO:0009117;nucleotide metabolic process;4.5430452206814e-08!GO:0045333;cellular respiration;5.34114646314371e-08!GO:0046034;ATP metabolic process;5.55363723855969e-08!GO:0043038;amino acid activation;5.7039870397964e-08!GO:0006418;tRNA aminoacylation for protein translation;5.7039870397964e-08!GO:0043039;tRNA aminoacylation;5.7039870397964e-08!GO:0004842;ubiquitin-protein ligase activity;5.80073241242697e-08!GO:0009056;catabolic process;6.03775601965537e-08!GO:0019787;small conjugating protein ligase activity;6.91235951260239e-08!GO:0007005;mitochondrion organization and biogenesis;7.15440330789222e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.57243089539728e-08!GO:0006461;protein complex assembly;8.10575534759636e-08!GO:0000785;chromatin;8.76078020451888e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.71966467558852e-08!GO:0000279;M phase;9.91611216444651e-08!GO:0005788;endoplasmic reticulum lumen;1.07515207260174e-07!GO:0019829;cation-transporting ATPase activity;1.50672171315695e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.54085477514133e-07!GO:0031497;chromatin assembly;2.07005693995653e-07!GO:0003924;GTPase activity;2.13836218906866e-07!GO:0046930;pore complex;2.72571023875449e-07!GO:0048475;coated membrane;2.79145235593441e-07!GO:0030117;membrane coat;2.79145235593441e-07!GO:0006754;ATP biosynthetic process;3.41433996624987e-07!GO:0006753;nucleoside phosphate metabolic process;3.41433996624987e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.0061786187819e-07!GO:0006099;tricarboxylic acid cycle;4.37214805764092e-07!GO:0046356;acetyl-CoA catabolic process;4.37214805764092e-07!GO:0005768;endosome;4.71670032887857e-07!GO:0051187;cofactor catabolic process;5.03837839587257e-07!GO:0016881;acid-amino acid ligase activity;5.79226443961407e-07!GO:0015630;microtubule cytoskeleton;6.29250977427845e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.78872793044469e-07!GO:0003697;single-stranded DNA binding;6.81903088299148e-07!GO:0043069;negative regulation of programmed cell death;7.94726673947561e-07!GO:0016779;nucleotidyltransferase activity;9.84737403882239e-07!GO:0045259;proton-transporting ATP synthase complex;1.01308678184361e-06!GO:0006916;anti-apoptosis;1.11588666999185e-06!GO:0051246;regulation of protein metabolic process;1.1986876613632e-06!GO:0009108;coenzyme biosynthetic process;1.23640135464327e-06!GO:0006091;generation of precursor metabolites and energy;1.28875909520077e-06!GO:0006084;acetyl-CoA metabolic process;1.33656285329146e-06!GO:0009109;coenzyme catabolic process;1.43494508507664e-06!GO:0000139;Golgi membrane;1.72049767975839e-06!GO:0043066;negative regulation of apoptosis;1.80059140688738e-06!GO:0043067;regulation of programmed cell death;1.97583443610994e-06!GO:0042981;regulation of apoptosis;2.2674550941539e-06!GO:0006793;phosphorus metabolic process;2.60385322254164e-06!GO:0006796;phosphate metabolic process;2.60385322254164e-06!GO:0005762;mitochondrial large ribosomal subunit;3.23580662259433e-06!GO:0000315;organellar large ribosomal subunit;3.23580662259433e-06!GO:0006366;transcription from RNA polymerase II promoter;3.37846106225419e-06!GO:0004298;threonine endopeptidase activity;3.38610610469456e-06!GO:0016787;hydrolase activity;3.76751073531304e-06!GO:0003899;DNA-directed RNA polymerase activity;3.98553195451279e-06!GO:0016607;nuclear speck;4.11305838615307e-06!GO:0008026;ATP-dependent helicase activity;4.52384229026064e-06!GO:0003714;transcription corepressor activity;4.6853550426778e-06!GO:0005667;transcription factor complex;4.92720902804987e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.34638421604263e-06!GO:0006752;group transfer coenzyme metabolic process;6.3101550086659e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.35419271709247e-06!GO:0004386;helicase activity;7.44628693521572e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.70609941891944e-06!GO:0000245;spliceosome assembly;8.78556789946816e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.61165390331145e-06!GO:0043566;structure-specific DNA binding;1.02301423141991e-05!GO:0045454;cell redox homeostasis;1.05565596468342e-05!GO:0051329;interphase of mitotic cell cycle;1.11764252677827e-05!GO:0016310;phosphorylation;1.16256571216968e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.22230783047062e-05!GO:0016853;isomerase activity;1.22555333458056e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.27284202988651e-05!GO:0045786;negative regulation of progression through cell cycle;1.30855859329366e-05!GO:0005798;Golgi-associated vesicle;1.3368714053864e-05!GO:0031988;membrane-bound vesicle;1.3368714053864e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.60478727845296e-05!GO:0005770;late endosome;1.62275115867306e-05!GO:0016563;transcription activator activity;1.80564462082306e-05!GO:0005905;coated pit;1.90041386532048e-05!GO:0044440;endosomal part;2.07240986445937e-05!GO:0010008;endosome membrane;2.07240986445937e-05!GO:0016049;cell growth;2.3954091642735e-05!GO:0050794;regulation of cellular process;2.50001595784391e-05!GO:0006403;RNA localization;2.59092975841959e-05!GO:0050657;nucleic acid transport;2.70150774889438e-05!GO:0051236;establishment of RNA localization;2.70150774889438e-05!GO:0050658;RNA transport;2.70150774889438e-05!GO:0008361;regulation of cell size;2.76164687861438e-05!GO:0005525;GTP binding;2.89006829641913e-05!GO:0005773;vacuole;2.94195981901696e-05!GO:0016564;transcription repressor activity;3.03817669617521e-05!GO:0008654;phospholipid biosynthetic process;3.13569706472157e-05!GO:0051170;nuclear import;3.26316133455742e-05!GO:0044262;cellular carbohydrate metabolic process;3.8148525690171e-05!GO:0031252;leading edge;3.87075994617321e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.91883628850961e-05!GO:0051325;interphase;4.25422365005844e-05!GO:0001558;regulation of cell growth;4.60566223918287e-05!GO:0005048;signal sequence binding;4.7439216445534e-05!GO:0030867;rough endoplasmic reticulum membrane;4.89096169026954e-05!GO:0000314;organellar small ribosomal subunit;5.04652845506037e-05!GO:0005763;mitochondrial small ribosomal subunit;5.04652845506037e-05!GO:0005819;spindle;5.05788686511105e-05!GO:0006606;protein import into nucleus;5.08554169907266e-05!GO:0016567;protein ubiquitination;5.43596985507663e-05!GO:0032446;protein modification by small protein conjugation;5.44883619679335e-05!GO:0007010;cytoskeleton organization and biogenesis;5.58630004581336e-05!GO:0000151;ubiquitin ligase complex;5.82009618670524e-05!GO:0000786;nucleosome;5.85477652035962e-05!GO:0043623;cellular protein complex assembly;6.64649348266768e-05!GO:0031324;negative regulation of cellular metabolic process;7.05252598774048e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.31571204150673e-05!GO:0016568;chromatin modification;7.85004667562462e-05!GO:0003713;transcription coactivator activity;8.23768179264952e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.44419075455357e-05!GO:0006613;cotranslational protein targeting to membrane;0.000103741472069613!GO:0009165;nucleotide biosynthetic process;0.000110847025603136!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000130424995010484!GO:0031410;cytoplasmic vesicle;0.000135539389603686!GO:0051789;response to protein stimulus;0.000136832009374406!GO:0006986;response to unfolded protein;0.000136832009374406!GO:0031968;organelle outer membrane;0.000143729522295421!GO:0019867;outer membrane;0.000143958523370838!GO:0030029;actin filament-based process;0.000147044851400887!GO:0031982;vesicle;0.000151095469582005!GO:0005813;centrosome;0.000178962988815091!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000181817263633793!GO:0000323;lytic vacuole;0.000189308162869078!GO:0005764;lysosome;0.000189308162869078!GO:0032561;guanyl ribonucleotide binding;0.000210784190144712!GO:0019001;guanyl nucleotide binding;0.000210784190144712!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000226029142455281!GO:0016859;cis-trans isomerase activity;0.000247065099300938!GO:0003724;RNA helicase activity;0.000251698788658434!GO:0006839;mitochondrial transport;0.000252111792993296!GO:0006261;DNA-dependent DNA replication;0.000264698718805418!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00027363463226418!GO:0043681;protein import into mitochondrion;0.000273864362696303!GO:0006626;protein targeting to mitochondrion;0.000290279843899823!GO:0030176;integral to endoplasmic reticulum membrane;0.000293760857383596!GO:0005815;microtubule organizing center;0.000299800928500042!GO:0005741;mitochondrial outer membrane;0.000337443012399163!GO:0051028;mRNA transport;0.000350602627846738!GO:0009892;negative regulation of metabolic process;0.000387908640392238!GO:0019843;rRNA binding;0.000430271562399856!GO:0007006;mitochondrial membrane organization and biogenesis;0.000445881130856305!GO:0008250;oligosaccharyl transferase complex;0.00045193188215462!GO:0005657;replication fork;0.00045193188215462!GO:0030880;RNA polymerase complex;0.000464323675187961!GO:0005769;early endosome;0.000472013278822178!GO:0043021;ribonucleoprotein binding;0.000494458810297365!GO:0005885;Arp2/3 protein complex;0.000548884042524115!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000568276578763095!GO:0008033;tRNA processing;0.000588692787245455!GO:0030663;COPI coated vesicle membrane;0.00067923515042805!GO:0030126;COPI vesicle coat;0.00067923515042805!GO:0004576;oligosaccharyl transferase activity;0.000687130982163111!GO:0048522;positive regulation of cellular process;0.000705798568626635!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000753155105790274!GO:0051427;hormone receptor binding;0.000755234402912513!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000783350852421824!GO:0046474;glycerophospholipid biosynthetic process;0.000794893852328285!GO:0043284;biopolymer biosynthetic process;0.000802943404968103!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000814762157305254!GO:0008092;cytoskeletal protein binding;0.000882065625290968!GO:0030133;transport vesicle;0.00089323758036629!GO:0051920;peroxiredoxin activity;0.000927152958464362!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000980692503872456!GO:0006414;translational elongation;0.000992430743984546!GO:0030137;COPI-coated vesicle;0.0010116469432841!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00101340719591744!GO:0016126;sterol biosynthetic process;0.00101604463337131!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00115207017511644!GO:0000428;DNA-directed RNA polymerase complex;0.00115207017511644!GO:0018196;peptidyl-asparagine modification;0.00115207017511644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00115207017511644!GO:0030132;clathrin coat of coated pit;0.00116848809366307!GO:0005791;rough endoplasmic reticulum;0.00141974660838311!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00143297498704488!GO:0015399;primary active transmembrane transporter activity;0.00143297498704488!GO:0035257;nuclear hormone receptor binding;0.00148664511963313!GO:0046483;heterocycle metabolic process;0.00152180586155997!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00155186037938774!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00155186037938774!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00155186037938774!GO:0040008;regulation of growth;0.0015736212129971!GO:0006891;intra-Golgi vesicle-mediated transport;0.0015736212129971!GO:0006612;protein targeting to membrane;0.00157769194406598!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00161000588512039!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00169173453846525!GO:0003684;damaged DNA binding;0.0017472861840196!GO:0008094;DNA-dependent ATPase activity;0.00179893125596848!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00194527030250136!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00194527030250136!GO:0044452;nucleolar part;0.00194789654996533!GO:0065009;regulation of a molecular function;0.00196761537856328!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00196761537856328!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00198131908086034!GO:0050789;regulation of biological process;0.00202853475142022!GO:0007051;spindle organization and biogenesis;0.00202963656700003!GO:0016044;membrane organization and biogenesis;0.00206713219989995!GO:0019899;enzyme binding;0.00217664750976296!GO:0006082;organic acid metabolic process;0.0021845791933447!GO:0030658;transport vesicle membrane;0.0021845791933447!GO:0051168;nuclear export;0.00218771809229689!GO:0005874;microtubule;0.00219952091141362!GO:0042802;identical protein binding;0.00224676119287929!GO:0006695;cholesterol biosynthetic process;0.00232123406081145!GO:0008047;enzyme activator activity;0.00237166448800069!GO:0007050;cell cycle arrest;0.00247495832434662!GO:0019752;carboxylic acid metabolic process;0.00260698275800576!GO:0006778;porphyrin metabolic process;0.00261133817578284!GO:0033013;tetrapyrrole metabolic process;0.00261133817578284!GO:0005684;U2-dependent spliceosome;0.00262453417860569!GO:0048471;perinuclear region of cytoplasm;0.00265698572620454!GO:0000059;protein import into nucleus, docking;0.0027017992477399!GO:0046467;membrane lipid biosynthetic process;0.00270447589119603!GO:0008186;RNA-dependent ATPase activity;0.00274402907093318!GO:0015992;proton transport;0.00280331994832041!GO:0008610;lipid biosynthetic process;0.00285090986165735!GO:0006818;hydrogen transport;0.0031028693703819!GO:0031301;integral to organelle membrane;0.003306442493201!GO:0017166;vinculin binding;0.00335390246658835!GO:0030118;clathrin coat;0.00351029362691128!GO:0006007;glucose catabolic process;0.00366952916327585!GO:0008139;nuclear localization sequence binding;0.00384532383948341!GO:0006383;transcription from RNA polymerase III promoter;0.00393083576402587!GO:0000775;chromosome, pericentric region;0.00394775794840846!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00398616502202079!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00403441816421513!GO:0015002;heme-copper terminal oxidase activity;0.00403441816421513!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00403441816421513!GO:0004129;cytochrome-c oxidase activity;0.00403441816421513!GO:0000082;G1/S transition of mitotic cell cycle;0.00408165442398949!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00412870480745369!GO:0030134;ER to Golgi transport vesicle;0.00415002029232316!GO:0000075;cell cycle checkpoint;0.00426275607418558!GO:0004177;aminopeptidase activity;0.00435131444766828!GO:0046489;phosphoinositide biosynthetic process;0.00443492509097004!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00462260954120712!GO:0048487;beta-tubulin binding;0.00476614167874221!GO:0005096;GTPase activator activity;0.00484287015690168!GO:0015631;tubulin binding;0.00488445190709134!GO:0016481;negative regulation of transcription;0.0049763494254486!GO:0006740;NADPH regeneration;0.00497708324379293!GO:0006098;pentose-phosphate shunt;0.00497708324379293!GO:0051252;regulation of RNA metabolic process;0.00509715463022366!GO:0051087;chaperone binding;0.00513847747050851!GO:0007243;protein kinase cascade;0.00560071467074335!GO:0031072;heat shock protein binding;0.00576350006018257!GO:0050662;coenzyme binding;0.0060026534008311!GO:0030660;Golgi-associated vesicle membrane;0.0060026534008311!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00601238850203273!GO:0003746;translation elongation factor activity;0.00608938373041774!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00610043789369384!GO:0004004;ATP-dependent RNA helicase activity;0.00624281137492804!GO:0006595;polyamine metabolic process;0.00628580790067655!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00638730439141656!GO:0007264;small GTPase mediated signal transduction;0.00646211055033805!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00648423033517006!GO:0042168;heme metabolic process;0.00650513526811953!GO:0003711;transcription elongation regulator activity;0.00657962830342398!GO:0051539;4 iron, 4 sulfur cluster binding;0.00667059036724574!GO:0006118;electron transport;0.006766411213241!GO:0031418;L-ascorbic acid binding;0.00691978296613282!GO:0022890;inorganic cation transmembrane transporter activity;0.0070551308974106!GO:0006979;response to oxidative stress;0.00705666821571107!GO:0030127;COPII vesicle coat;0.00712741519243823!GO:0012507;ER to Golgi transport vesicle membrane;0.00712741519243823!GO:0006520;amino acid metabolic process;0.00737508284613439!GO:0005869;dynactin complex;0.00738904895611724!GO:0045941;positive regulation of transcription;0.007417874896203!GO:0008632;apoptotic program;0.00747912979843417!GO:0008243;plasminogen activator activity;0.00767574580889471!GO:0045936;negative regulation of phosphate metabolic process;0.00791043137739411!GO:0008180;signalosome;0.00794649672823225!GO:0030308;negative regulation of cell growth;0.00795046809063248!GO:0006779;porphyrin biosynthetic process;0.00795046809063248!GO:0033014;tetrapyrrole biosynthetic process;0.00795046809063248!GO:0043488;regulation of mRNA stability;0.00798028034344212!GO:0043487;regulation of RNA stability;0.00798028034344212!GO:0016363;nuclear matrix;0.00799456850873091!GO:0048500;signal recognition particle;0.00837320590433544!GO:0043492;ATPase activity, coupled to movement of substances;0.00858462852510064!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00914445242786124!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00918235878691551!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00918898110474885!GO:0045792;negative regulation of cell size;0.00924482819160015!GO:0033673;negative regulation of kinase activity;0.00938320096147251!GO:0006469;negative regulation of protein kinase activity;0.00938320096147251!GO:0003729;mRNA binding;0.00939627495385874!GO:0051540;metal cluster binding;0.00947023659386555!GO:0051536;iron-sulfur cluster binding;0.00947023659386555!GO:0031902;late endosome membrane;0.00947023659386555!GO:0007040;lysosome organization and biogenesis;0.00951551877974876!GO:0016197;endosome transport;0.0097274660192203!GO:0030125;clathrin vesicle coat;0.00981473792405617!GO:0030665;clathrin coated vesicle membrane;0.00981473792405617!GO:0006497;protein amino acid lipidation;0.00981569635268577!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00985047630083458!GO:0016272;prefoldin complex;0.00997802699169695!GO:0019206;nucleoside kinase activity;0.0103447187174183!GO:0051348;negative regulation of transferase activity;0.0105761570620235!GO:0007088;regulation of mitosis;0.0107529022867046!GO:0006950;response to stress;0.0108298737717807!GO:0006289;nucleotide-excision repair;0.0109221321227935!GO:0031543;peptidyl-proline dioxygenase activity;0.0109792345165653!GO:0030659;cytoplasmic vesicle membrane;0.0110586612891035!GO:0005862;muscle thin filament tropomyosin;0.0110694137594736!GO:0008168;methyltransferase activity;0.0111569788423658!GO:0019318;hexose metabolic process;0.0111569788423658!GO:0006509;membrane protein ectodomain proteolysis;0.0114660058865024!GO:0033619;membrane protein proteolysis;0.0114660058865024!GO:0006401;RNA catabolic process;0.0114741709791976!GO:0045045;secretory pathway;0.0116747314633397!GO:0043433;negative regulation of transcription factor activity;0.0117790244043774!GO:0051287;NAD binding;0.0117916313633485!GO:0007033;vacuole organization and biogenesis;0.0118044960017916!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0119540564320252!GO:0016741;transferase activity, transferring one-carbon groups;0.0119716261658383!GO:0000049;tRNA binding;0.0122543055180601!GO:0030027;lamellipodium;0.0123535584705661!GO:0005832;chaperonin-containing T-complex;0.0126739864362222!GO:0005996;monosaccharide metabolic process;0.0132538387536966!GO:0006402;mRNA catabolic process;0.0132538387536966!GO:0006220;pyrimidine nucleotide metabolic process;0.0136326036251984!GO:0003678;DNA helicase activity;0.0138673719336008!GO:0032508;DNA duplex unwinding;0.0142754086063208!GO:0032392;DNA geometric change;0.0142754086063208!GO:0031124;mRNA 3'-end processing;0.0145457975909929!GO:0019798;procollagen-proline dioxygenase activity;0.0147223325063725!GO:0008312;7S RNA binding;0.014729162328084!GO:0030119;AP-type membrane coat adaptor complex;0.0148345050971842!GO:0006807;nitrogen compound metabolic process;0.0152847815984704!GO:0005637;nuclear inner membrane;0.0153270111101681!GO:0007021;tubulin folding;0.0159286903353046!GO:0008652;amino acid biosynthetic process;0.016579962209824!GO:0009112;nucleobase metabolic process;0.0165924947410274!GO:0031529;ruffle organization and biogenesis;0.017086803985217!GO:0003682;chromatin binding;0.0175944222455687!GO:0050178;phenylpyruvate tautomerase activity;0.0179946522404016!GO:0006458;'de novo' protein folding;0.0181493867327667!GO:0051084;'de novo' posttranslational protein folding;0.0181493867327667!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0185256042733441!GO:0000096;sulfur amino acid metabolic process;0.0185363117517943!GO:0005774;vacuolar membrane;0.0185916385199852!GO:0035258;steroid hormone receptor binding;0.0186238566868089!GO:0009303;rRNA transcription;0.0186305424572781!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0186591190319731!GO:0045047;protein targeting to ER;0.0186591190319731!GO:0006284;base-excision repair;0.0187039168217781!GO:0016301;kinase activity;0.0188505139137405!GO:0005100;Rho GTPase activator activity;0.0188924733491418!GO:0043022;ribosome binding;0.0190800935309277!GO:0042326;negative regulation of phosphorylation;0.0194170710124953!GO:0046519;sphingoid metabolic process;0.019900625135536!GO:0006783;heme biosynthetic process;0.0200132823855259!GO:0030041;actin filament polymerization;0.0208464234471352!GO:0048037;cofactor binding;0.0211604614566335!GO:0045893;positive regulation of transcription, DNA-dependent;0.0214047081590424!GO:0046365;monosaccharide catabolic process;0.021641835427055!GO:0030131;clathrin adaptor complex;0.0219608620834312!GO:0044433;cytoplasmic vesicle part;0.0220029164835919!GO:0003756;protein disulfide isomerase activity;0.0220029164835919!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0220029164835919!GO:0005975;carbohydrate metabolic process;0.0222141410674994!GO:0048468;cell development;0.0225461080039535!GO:0008538;proteasome activator activity;0.0225892981956693!GO:0006611;protein export from nucleus;0.0229919848308175!GO:0006650;glycerophospholipid metabolic process;0.023586424953319!GO:0043596;nuclear replication fork;0.0236806971083424!GO:0030145;manganese ion binding;0.023724008685923!GO:0006739;NADP metabolic process;0.0238718073314163!GO:0004527;exonuclease activity;0.0239270791781382!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0241636016919718!GO:0009116;nucleoside metabolic process;0.0243554528885108!GO:0006066;alcohol metabolic process;0.0243554528885108!GO:0016408;C-acyltransferase activity;0.0244218453567997!GO:0007346;regulation of progression through mitotic cell cycle;0.0244578546602064!GO:0030433;ER-associated protein catabolic process;0.0248320544938153!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0248320544938153!GO:0046426;negative regulation of JAK-STAT cascade;0.0248924058397188!GO:0008154;actin polymerization and/or depolymerization;0.0250171342960707!GO:0048518;positive regulation of biological process;0.0250191280557905!GO:0008637;apoptotic mitochondrial changes;0.0252597337498869!GO:0030496;midbody;0.0253900606605026!GO:0006268;DNA unwinding during replication;0.0255457785176817!GO:0022415;viral reproductive process;0.0257836772990122!GO:0004518;nuclease activity;0.0260957774682537!GO:0009308;amine metabolic process;0.0267968368945775!GO:0050790;regulation of catalytic activity;0.0268158800723715!GO:0045926;negative regulation of growth;0.0270453326569777!GO:0006354;RNA elongation;0.0271105699166891!GO:0006096;glycolysis;0.0272552105040598!GO:0043189;H4/H2A histone acetyltransferase complex;0.0273598026717849!GO:0004003;ATP-dependent DNA helicase activity;0.0282945795200919!GO:0006144;purine base metabolic process;0.028326187636669!GO:0008022;protein C-terminus binding;0.028326187636669!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.028326187636669!GO:0006506;GPI anchor biosynthetic process;0.0286117645822777!GO:0006672;ceramide metabolic process;0.0287486177737094!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0287486177737094!GO:0010257;NADH dehydrogenase complex assembly;0.0287486177737094!GO:0033108;mitochondrial respiratory chain complex assembly;0.0287486177737094!GO:0006302;double-strand break repair;0.0291801993597168!GO:0042158;lipoprotein biosynthetic process;0.0293893578262061!GO:0006352;transcription initiation;0.0296018397788197!GO:0000339;RNA cap binding;0.0296188868139553!GO:0030521;androgen receptor signaling pathway;0.0296294003005969!GO:0045334;clathrin-coated endocytic vesicle;0.0297108680719389!GO:0004674;protein serine/threonine kinase activity;0.0301163426976991!GO:0031272;regulation of pseudopodium formation;0.0301163426976991!GO:0031269;pseudopodium formation;0.0301163426976991!GO:0031344;regulation of cell projection organization and biogenesis;0.0301163426976991!GO:0031268;pseudopodium organization and biogenesis;0.0301163426976991!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0301163426976991!GO:0031274;positive regulation of pseudopodium formation;0.0301163426976991!GO:0003690;double-stranded DNA binding;0.0303356335335851!GO:0006984;ER-nuclear signaling pathway;0.0304908206149434!GO:0016860;intramolecular oxidoreductase activity;0.0317054924347551!GO:0019320;hexose catabolic process;0.0317054924347551!GO:0005758;mitochondrial intermembrane space;0.0318768236973008!GO:0006405;RNA export from nucleus;0.0320436574621144!GO:0005876;spindle microtubule;0.0323285470580921!GO:0005092;GDP-dissociation inhibitor activity;0.033431635020268!GO:0031300;intrinsic to organelle membrane;0.033431635020268!GO:0000287;magnesium ion binding;0.0343883046449736!GO:0000030;mannosyltransferase activity;0.0347607504623236!GO:0035267;NuA4 histone acetyltransferase complex;0.0350119632436153!GO:0031970;organelle envelope lumen;0.0353279557180275!GO:0006376;mRNA splice site selection;0.035338362949359!GO:0000389;nuclear mRNA 3'-splice site recognition;0.035338362949359!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0359950272426147!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0359950272426147!GO:0001726;ruffle;0.0360830136045115!GO:0006378;mRNA polyadenylation;0.0362135891147545!GO:0006519;amino acid and derivative metabolic process;0.0367891283520261!GO:0000910;cytokinesis;0.0373462315239906!GO:0044437;vacuolar part;0.0373674477783614!GO:0006505;GPI anchor metabolic process;0.0378171832041518!GO:0030128;clathrin coat of endocytic vesicle;0.0380041409799449!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0380041409799449!GO:0030122;AP-2 adaptor complex;0.0380041409799449!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0380054437262039!GO:0046164;alcohol catabolic process;0.03816263447514!GO:0006733;oxidoreduction coenzyme metabolic process;0.0388165543515495!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0390827230104966!GO:0008147;structural constituent of bone;0.0398118163285529!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0405333961316891!GO:0030508;thiol-disulfide exchange intermediate activity;0.0411535481576436!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0417349521442048!GO:0007093;mitotic cell cycle checkpoint;0.0420123169388106!GO:0043130;ubiquitin binding;0.0424738437442687!GO:0032182;small conjugating protein binding;0.0424738437442687!GO:0030032;lamellipodium biogenesis;0.0424958568982995!GO:0033559;unsaturated fatty acid metabolic process;0.0427991272057097!GO:0006636;unsaturated fatty acid biosynthetic process;0.0427991272057097!GO:0051098;regulation of binding;0.0428086314974464!GO:0030911;TPR domain binding;0.0432957375901321!GO:0051085;chaperone cofactor-dependent protein folding;0.0434807255480689!GO:0051128;regulation of cellular component organization and biogenesis;0.0436737947976766!GO:0043086;negative regulation of catalytic activity;0.0446054423034285!GO:0001666;response to hypoxia;0.0449901060250195!GO:0022408;negative regulation of cell-cell adhesion;0.0450782097854212!GO:0003779;actin binding;0.0453727413688803!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0453727413688803!GO:0005765;lysosomal membrane;0.0458047289763871!GO:0000209;protein polyubiquitination;0.0461563987737599!GO:0006892;post-Golgi vesicle-mediated transport;0.0465775239441562!GO:0051059;NF-kappaB binding;0.0470713090155352!GO:0006730;one-carbon compound metabolic process;0.0475827221810319!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0478496405092279!GO:0009967;positive regulation of signal transduction;0.0479668249885744!GO:0006790;sulfur metabolic process;0.0480593470005679!GO:0000178;exosome (RNase complex);0.0495771808385258!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0496796628642929!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0496796628642929!GO:0004532;exoribonuclease activity;0.0498926823325812!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0498926823325812!GO:0035035;histone acetyltransferase binding;0.0499304519450449
|sample_id=11439
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=umbilical artery
|top_motifs=GTF2A1,2:1.64561992467;IKZF1:1.54853436868;EBF1:1.24076523084;HOX{A5,B5}:1.21533084278;ZIC1..3:1.1311753279;XCPE1{core}:1.12360004465;GCM1,2:1.10211299023;SRF:1.07384905309;HAND1,2:1.05212266388;PBX1:1.0349468263;PPARG:0.929897300965;NFE2L1:0.901622588903;TFAP2{A,C}:0.898009798611;GLI1..3:0.890194422488;ZNF148:0.862931831516;RXRA_VDR{dimer}:0.861809432902;ZBTB6:0.836102281339;NR5A1,2:0.794938868375;ZNF238:0.792350786509;TFAP4:0.789114886372;TLX1..3_NFIC{dimer}:0.732347404079;EN1,2:0.7061557282;UFEwm:0.690362912779;HES1:0.683867632067;SOX{8,9,10}:0.676228328674;POU2F1..3:0.671887083195;TP53:0.63559746702;NR3C1:0.614041969958;GZF1:0.605571315175;GFI1B:0.605249909866;HMX1:0.595959092197;TEAD1:0.593915542205;HSF1,2:0.562189406369;RXR{A,B,G}:0.560411788626;TFCP2:0.551945578646;POU3F1..4:0.545071751151;HIF1A:0.54488247427;TBP:0.523928273838;KLF4:0.519482483672;NANOG{mouse}:0.507752045508;TAL1_TCF{3,4,12}:0.456218920066;ELK1,4_GABP{A,B1}:0.41263717997;ALX4:0.407697741958;PAX8:0.402778845189;ESR1:0.38980146021;TFAP2B:0.384023868294;BACH2:0.372523563045;LHX3,4:0.369922579199;MYBL2:0.363983720023;NFATC1..3:0.351595913744;REST:0.34789695048;NFE2L2:0.334668320437;GFI1:0.320945231929;ONECUT1,2:0.312770121692;YY1:0.287543508728;XBP1:0.286501835504;GTF2I:0.260194381035;ATF6:0.257886633432;PAX1,9:0.255544067403;SMAD1..7,9:0.252395740123;FOXL1:0.232481285726;FOSL2:0.230585320067;MAFB:0.224542486937;CDC5L:0.211716958025;HIC1:0.201539525151;LEF1_TCF7_TCF7L1,2:0.20135227797;FOS_FOS{B,L1}_JUN{B,D}:0.183280507364;AR:0.177681258659;SOX17:0.167565328037;ESRRA:0.162617759511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159460218463;ZNF423:0.155902597543;MTE{core}:0.147830203782;CRX:0.131859178669;E2F1..5:0.130416816742;TFDP1:0.125254977215;HNF1A:0.100990373221;bHLH_family:0.096084624464;SPZ1:0.0771993000618;AHR_ARNT_ARNT2:0.0625959211796;VSX1,2:0.0615270319595;ADNP_IRX_SIX_ZHX:0.0586953684746;TOPORS:0.057113571612;HLF:0.0180906355873;NFY{A,B,C}:0.0097979209944;NKX2-2,8:0.00467080083045;SOX2:0.00186957752005;NFE2:-0.0332586098276;NHLH1,2:-0.0333854403668;ZNF143:-0.043850848294;OCT4_SOX2{dimer}:-0.0616174991595;MZF1:-0.0702329298985;GATA6:-0.0716316117647;POU6F1:-0.0778172184451;MEF2{A,B,C,D}:-0.0784266803889;GATA4:-0.0880233686527;HNF4A_NR2F1,2:-0.114981373079;NR6A1:-0.115772877062;CEBPA,B_DDIT3:-0.123689387968;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.125606971816;MYB:-0.131794766232;PAX3,7:-0.143620415348;SP1:-0.148695153055;PRDM1:-0.151907349734;PATZ1:-0.157885842349;FOX{I1,J2}:-0.167700130487;PAX5:-0.168377682677;ZNF384:-0.172100931678;NFKB1_REL_RELA:-0.173768286372;RFX1:-0.201009814892;RUNX1..3:-0.211639595151;POU1F1:-0.213143765774;PAX6:-0.216211330188;DBP:-0.221239590949;EGR1..3:-0.239887469946;MAZ:-0.244996511376;ETS1,2:-0.254087136004;RREB1:-0.255164938609;STAT2,4,6:-0.255287122647;DMAP1_NCOR{1,2}_SMARC:-0.256365330654;LMO2:-0.273507935934;NRF1:-0.315537320329;NKX3-2:-0.318428698845;STAT5{A,B}:-0.332205201265;MYOD1:-0.332566237098;MTF1:-0.335782596043;TBX4,5:-0.353238829002;ELF1,2,4:-0.357013222061;JUN:-0.365886426054;SPIB:-0.379735492371;PITX1..3:-0.390188866494;PRRX1,2:-0.431363951537;EVI1:-0.439490142157;MYFfamily:-0.453963059473;ARID5B:-0.467504640433;SPI1:-0.481756655431;NKX2-3_NKX2-5:-0.500905558388;MED-1{core}:-0.503830877871;HMGA1,2:-0.504600171589;PAX2:-0.506801317286;FOXQ1:-0.519273957228;ZEB1:-0.525506096291;NR1H4:-0.527129977658;POU5F1:-0.534373563531;HOXA9_MEIS1:-0.539928925535;T:-0.543077926205;ZFP161:-0.548600313974;TLX2:-0.57387195748;PAX4:-0.5774137217;NFIX:-0.584414394157;SNAI1..3:-0.597885671249;HOX{A6,A7,B6,B7}:-0.613702995732;TEF:-0.627527393899;HBP1_HMGB_SSRP1_UBTF:-0.633842226822;BREu{core}:-0.633850081178;ALX1:-0.642746922168;NKX2-1,4:-0.646655092433;NKX3-1:-0.661473110345;AIRE:-0.661805438974;HOX{A4,D4}:-0.682192532411;FOX{F1,F2,J1}:-0.708515207199;NANOG:-0.714332366008;CREB1:-0.72099329829;ATF2:-0.738180604676;EP300:-0.740765057228;NFIL3:-0.749496538034;RFX2..5_RFXANK_RFXAP:-0.755349166998;NKX6-1,2:-0.7610250715;ATF5_CREB3:-0.762853019323;CUX2:-0.819156215745;FOXD3:-0.836482371737;RORA:-0.846761676645;IRF1,2:-0.896714180206;TGIF1:-0.908246421069;FOXP1:-0.921997137422;FOXM1:-0.924551840977;ATF4:-0.947827591713;SOX5:-0.971346635885;IRF7:-1.05786427913;STAT1,3:-1.05901112064;FOX{D1,D2}:-1.1200739815;FOXP3:-1.20384326971;IKZF2:-1.23138121073;FOXA2:-1.25415018077;FOXO1,3,4:-1.28726891777;ZBTB16:-1.387005763;CDX1,2,4:-1.43184633053;SREBF1,2:-1.45131629443;BPTF:-1.49060367067;FOXN1:-1.67110552204;PDX1:-1.67605021299;RBPJ:-1.76404489825
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11439-118H8;search_select_hide=table117:FF:11439-118H8
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Smooth Muscle Cells - Umbilical Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12049
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical artery
dev stageinfant
sexfemale
ageNeonatal
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1447
catalog numberCA252-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005184
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12049 CAGE DRX008509 DRR009381
Accession ID Hg19

Library idBAMCTSS
CNhs12049 DRZ000806 DRZ002191
Accession ID Hg38

Library idBAMCTSS
CNhs12049 DRZ012156 DRZ013541
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005184
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.TAGCTT sRNA-Seq DRX037233 DRR041599
Accession ID Hg19

Library idBAMCTSS
SRhi10014.TAGCTT DRZ007241


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0997
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0365
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.266
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00251
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.285
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.341
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.768
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.328
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.582
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.108
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.718
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.822
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.472
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.328
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12049

Jaspar motifP-value
MA0002.20.955
MA0003.10.288
MA0004.10.493
MA0006.10.191
MA0007.10.108
MA0009.10.286
MA0014.10.704
MA0017.10.735
MA0018.20.00188
MA0019.10.397
MA0024.10.422
MA0025.10.102
MA0027.10.949
MA0028.10.368
MA0029.10.286
MA0030.10.00283
MA0031.11.4406e-4
MA0035.20.678
MA0038.10.756
MA0039.20.972
MA0040.10.395
MA0041.10.629
MA0042.10.758
MA0043.11.24394e-4
MA0046.10.33
MA0047.20.21
MA0048.10.0738
MA0050.14.57502e-8
MA0051.18.62044e-4
MA0052.10.953
MA0055.10.0235
MA0057.10.116
MA0058.10.166
MA0059.10.349
MA0060.10.406
MA0061.10.973
MA0062.20.598
MA0065.20.243
MA0066.10.238
MA0067.10.0067
MA0068.10.649
MA0069.10.786
MA0070.10.405
MA0071.10.404
MA0072.10.828
MA0073.10.706
MA0074.10.288
MA0076.10.819
MA0077.10.0893
MA0078.10.733
MA0079.20.753
MA0080.25.36038e-6
MA0081.10.0663
MA0083.14.4469e-5
MA0084.10.997
MA0087.10.773
MA0088.10.337
MA0090.10.0409
MA0091.10.231
MA0092.10.341
MA0093.10.428
MA0099.24.32103e-6
MA0100.10.237
MA0101.10.449
MA0102.20.00307
MA0103.10.313
MA0104.20.407
MA0105.10.655
MA0106.10.205
MA0107.10.673
MA0108.24.14041e-4
MA0111.10.0419
MA0112.20.0479
MA0113.10.334
MA0114.10.905
MA0115.10.685
MA0116.10.596
MA0117.10.432
MA0119.10.352
MA0122.10.589
MA0124.10.486
MA0125.10.41
MA0131.10.729
MA0135.10.187
MA0136.13.19738e-5
MA0137.20.0229
MA0138.20.397
MA0139.10.433
MA0140.10.921
MA0141.10.2
MA0142.10.747
MA0143.10.305
MA0144.10.517
MA0145.10.272
MA0146.10.218
MA0147.10.897
MA0148.10.343
MA0149.10.597
MA0150.10.95
MA0152.10.731
MA0153.10.856
MA0154.10.388
MA0155.10.0555
MA0156.10.135
MA0157.10.0062
MA0159.10.848
MA0160.10.977
MA0162.10.0465
MA0163.10.0532
MA0164.10.519
MA0258.10.108
MA0259.10.699



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12049

Novel motifP-value
10.744
100.476
1000.415
1010.0651
1020.798
1030.412
1040.294
1050.801
1060.13
1070.0217
1080.973
1090.0232
110.0633
1100.0879
1110.639
1120.432
1130.0311
1140.868
1150.02
1160.0169
1170.42
1180.943
1190.499
120.683
1200.0492
1210.436
1220.731
1230.0202
1240.465
1250.84
1260.959
1270.796
1280.352
1290.589
130.674
1300.478
1310.441
1320.348
1330.713
1340.284
1350.509
1360.447
1370.0723
1380.382
1390.878
140.354
1400.712
1410.57
1420.567
1430.00845
1440.729
1450.45
1460.672
1470.0611
1480.362
1490.0383
150.662
1500.0753
1510.919
1520.0427
1530.399
1540.26
1550.1
1560.934
1570.143
1580.0157
1590.415
160.163
1600.017
1610.371
1620.169
1630.928
1640.711
1650.321
1660.37
1670.328
1680.963
1690.0848
170.16
180.368
190.0808
20.236
200.464
210.648
220.186
230.476
240.318
250.513
260.225
270.345
280.166
290.473
30.635
300.233
310.577
322.88729e-7
330.753
340.236
350.79
360.735
370.0795
380.96
390.257
40.524
400.0766
410.776
420.86
430.669
440.1
450.487
460.169
470.475
480.136
490.725
50.556
500.386
510.986
520.867
530.268
540.992
550.702
560.497
570.878
580.327
590.0223
60.996
600.806
610.599
620.707
630.333
640.167
650.167
660.445
670.905
680.00584
690.377
70.744
700.973
710.546
720.317
730.00859
740.224
750.394
760.207
770.0108
780.746
790.0061
80.0479
800.933
810.934
820.694
830.749
840.742
850.845
860.872
870.0129
880.159
890.367
90.291
900.0759
910.827
920.777
930.595
940.851
950.0611
960.594
970.928
980.987
993.31206e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12049


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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