FF:11455-119A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005660 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008456;DRR009328;DRZ000753;DRZ002138;DRZ012103;DRZ013488 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11455-119A6 | |id=FF:11455-119A6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000162 | ||
|is_obsolete= | |||
|library_id=CNhs12056 | |||
|library_id_phase_based=2:CNhs12056 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11455 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11455 | |||
|name=Skeletal Muscle Cells, donor5 | |name=Skeletal Muscle Cells, donor5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12056,LSID838,release011,COMPLETED | |profile_hcage=CNhs12056,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0310094911974069,0,0,0.429516570444575,0,-0.160318030086386,0,-0.161084102518412,0.257545359429565,0,0,0,0,0,0,0,0,0,0,0,0.0620189823948138,0,0.300307801740839,0,0.0310094911974069,0,0,0,0.331558674176518,0,0,0.320674222310404,0,0,0,0,0,0,0,0,0,0,0.164504839448406,0,0.105096275449668,0.199141861812586,0,0,0,0,0,0,0,0.00679447008457255,0,0,0,0,0,0.0565783491574565,0.0620189823948138,0.110915124300853,0,0,0.18618872225283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620189823948138,0,0,0,0,0.312840216806712,0,0,-0.0584468268118252,-0.0227690942104864,0,0.164504839448406,0.0310094911974069,0,0.0182426784373957,0.110612677088577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00758014884926805,0.0620189823948138,0,0,-0.0607168725750158,-0.308992637852219,0,0,0.0919588556478427,0,0,0 | |||
|repeat_enrich_byname=0,0.164504839448406,0,0,0.0182426784373957,0,0,0,0.0620189823948138,0.207907485543458,0.625680433613424,0,0.0620189823948138,0.164504839448406,0,0,0.0697399489474945,0,-0.0204554066627417,0.0209896969249344,0.058139014837551,0,0.173525618774841,0,0,0,0,0,0,0,0,0,0.0797876185908933,0,0.353571707550311,0,0.0620189823948138,0.0620189823948138,0,0.0123842101135563,0.0114465933346516,0,-0.070304318377781,-0.0683442610773682,0,0.033085633303047,0,0,-0.0536422423802437,0,-0.00460145411863853,0.164643768728223,0.0339104612539103,0.0534447649747937,-0.055712496781182,0,0,0,0.121959502184635,-0.111980885275512,0,0,-0.0395274320276708,-0.099097198836456,0,0.0620189823948138,0.489806610616207,0,0.036906598095214,0.1123359240335,0,0.0146232067404946,0,0,0,0,0,0,0,0,0,0,0,0.504634470975681,-0.01006977244591,0,0,0.0620189823948138,0,-0.329158074594776,0,0.0533252451381541,0.871693109429864,0.147443742482085,-0.0200221388696451,0.103999011869341,0,-0.0188573775439863,0.0185648977965256,-0.263019485503915,0.0365169562774391,0.0605056361723195,0.263649092539419,0.0287833060378059,0.123858983171412,0.09457856305383,-0.00348914158741537,-0.0977614076997912,0.0606698091674532,0.211222365867914,-0.25450582746902,0,0,0,-0.24629371235149,0,-0.0419199512633901,-0.0605981440321985,-0.0725887468885186,-0.198039366256521,0.0144938093549982,0.0429455336484034,-0.000541725430766027,0.808221004153346,-0.00380564080732804,0.0104935045076579,0.428606747740727,0.0355435310122063,0,-0.0521429404015372,-0.043106619523811,-0.247330984875905,0.0403280634633166,0,-0.030346649721714,-0.0683442610773682,0,0.188479795085786,0.101715861700033,0,0,-0.174792971731786,0,0,0.0660650059362873,0.0294481577168683,0.164504839448406,0.0570386319723182,-0.37498730358176,0.19666100888903,0,-0.08055799866851,0.0346140134092793,0.0307910379684114,0,-0.145748789897834,0.045193175440835,-0.0507102153096518,0.0557398081152896,0,0.0794690256434615,0.209736159169263,0.0533844420732092,-0.0455381884209727,-0.0584468268118252,-0.0892873657397403,-0.0237514261878182,-0.0144734217190983,0.232961417282506,0.0435695362669076,0.0763780069731185,0,-0.0205997919833996,0.0446222566805606,-0.0369295652983022,0.005345695966104,0.283532349465927,-0.210970695453571,0,-0.124777572324331,0,-0.223811894024875,0.19609075454464,-0.155757025114759,0.0553483953689109,0,-0.0508603963217089,-0.117505874269005,0.0142862376046105,0,0,0,0.303263728754627,0.224934859292419,-0.122501921829631,0.131691271530391,0,-0.0297621959476015,0,0,0.0251737432815845,-0.235476037764389,0,-0.269942321009181,-0.20521865507377,-0.17469947075072,-0.115971073434934,0,0,0.158618271374339,0,0.453630812089267,-0.398020578274572,-0.00411605196516748,0.0214012440773574,0.529548948227146,0.0371171022697344,0.252356891523183,0,0,-0.0612497362900736,0,0.207000232951532,0,0,0.00633158155172245,0,0,0.123681968525821,0.0620189823948138,0.0620499428192705,0.0620189823948138,0.00596171792254818,0,0,0,0,0,0.132628051115154,0.074683240228127,0,0,0,0.0620189823948138,0,0.347920916852686,0,-0.0476225777620675,0,0.0620189823948138,0.162593148735903,0.00188505928032687,0.193901408556639,0,0,0,0,-0.215723402553475,0.0441273749569168,0.116278029675102,0.0760447790458263,0,0.0310094911974069,0,0,0.0301370398858908,0,0,0,0.123681968525821,-0.057730457053664,-0.132227739834515,0,0,0,0.221225354177154,0,0,0.0620189823948138,0.0449514082412819,0.0179872730544721,0,0,-0.0390243003701176,0,-0.14895059063826,-0.0815818795468414,0,0.215956880897724,0.0385119114843717,-0.549302378206407,0,0.164504839448406,0.236832623989056,0,0,0.220265919460384,0,0,0.034892247313403,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.142124944591229,0.224694767574549,0.0370528174171782,0,0,0,0,0,0,0.0069034681185038,0.112836342164526,0,0,0.0310094911974069,0,0,0,0,0.0321431493667625,0.213203285899265,0,0,0,0,0,0.110915124300853,0,0,0,0.0620189823948138,0.307183233315672,0,0,-0.161084102518412,0,0,0,0,0,0,0.0103247651367787,0,0,0,0,0,0,0.0845883995080103,-0.275376348665192,0,0.0620189823948138,0,0,0,0,0,0.0730876186465956,0,0.207907485543458,0,0,0.133479563342663,0,0,0,0.103111100754302,0,-0.160318030086386,0.429516570444575,0,0.0620189823948138,0,0,0.0620189823948138,0.082252419724203,0,0,0,0,0,0,0,0,0,0,0,0.11326191092161,0,0,0.315781265984521,0.0382678162488507,0.231642558913029,-0.00965624470150055,0,0,0.123047421040377,0,0,0,0,0,0,-0.031340424028527,0.00458885348547083,0,0,0,0,0,0,0.0310094911974069,0,0,0,0,0,0,0,0,0,0,0.0620189823948138,0,0,0,0,0,0,0.0208844922392883,0,0,0,0,0.403984259139626,0,0,0.331558674176518,0,0,-0.0920328098005262,0,0,0,0.0527321306679286,0.251680241310857,0,0.0488894554340772,0.30428175594082,0.0351874450403426,0,0,0.247363937051641,0.0347629335525029,0,0,0.0206731815504024,0.0620189823948138,0.216754962047026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300307801740839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082252419724203,0,0,0,0,0,0,0.154416945209966,0.11627802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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3505 | |rna_catalog_number=SC3505 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.0806380034807e-275!GO:0043226;organelle;2.27663469000715e-224!GO:0043229;intracellular organelle;5.49526784605397e-224!GO:0043231;intracellular membrane-bound organelle;3.45763124489504e-212!GO:0043227;membrane-bound organelle;9.14667252167375e-212!GO:0005737;cytoplasm;2.77356686601144e-207!GO:0044422;organelle part;1.60043123771571e-173!GO:0044446;intracellular organelle part;4.09568468648546e-172!GO:0044444;cytoplasmic part;3.91507680754901e-153!GO:0032991;macromolecular complex;2.28735771977264e-119!GO:0030529;ribonucleoprotein complex;1.52128181565349e-100!GO:0044237;cellular metabolic process;1.97374528721788e-99!GO:0044238;primary metabolic process;8.9421899953421e-98!GO:0005634;nucleus;3.01875510265137e-87!GO:0043170;macromolecule metabolic process;7.87340500547681e-87!GO:0043233;organelle lumen;1.52429319359523e-86!GO:0031974;membrane-enclosed lumen;1.52429319359523e-86!GO:0005739;mitochondrion;6.24749841489878e-86!GO:0044428;nuclear part;1.4181760295512e-83!GO:0005515;protein binding;1.24018976189827e-78!GO:0003723;RNA binding;1.31656324685431e-75!GO:0005840;ribosome;7.5210729107696e-61!GO:0043234;protein complex;1.3156897239824e-60!GO:0044429;mitochondrial part;7.92210762487072e-58!GO:0006396;RNA processing;3.93339750898125e-56!GO:0006412;translation;5.60074041990305e-55!GO:0031090;organelle membrane;1.41156948211912e-53!GO:0016043;cellular component organization and biogenesis;1.90474957035146e-53!GO:0003735;structural constituent of ribosome;3.63929841606372e-53!GO:0031967;organelle envelope;8.57168671935449e-52!GO:0031975;envelope;2.64933289552594e-51!GO:0031981;nuclear lumen;2.29642211266134e-48!GO:0043283;biopolymer metabolic process;3.5076311327357e-48!GO:0043228;non-membrane-bound organelle;8.31713623288571e-48!GO:0043232;intracellular non-membrane-bound organelle;8.31713623288571e-48!GO:0019538;protein metabolic process;2.29889564772807e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.45736502659021e-47!GO:0009058;biosynthetic process;7.76910630810515e-47!GO:0010467;gene expression;2.27693168009907e-46!GO:0033279;ribosomal subunit;7.27708287369092e-46!GO:0044249;cellular biosynthetic process;6.61148213898836e-45!GO:0044260;cellular macromolecule metabolic process;1.16139986766584e-42!GO:0044267;cellular protein metabolic process;8.41434795481198e-42!GO:0009059;macromolecule biosynthetic process;8.87135770825172e-42!GO:0005829;cytosol;1.61123563406822e-41!GO:0015031;protein transport;1.84982763045564e-41!GO:0033036;macromolecule localization;2.0555974008537e-41!GO:0016071;mRNA metabolic process;3.56196914240897e-41!GO:0006996;organelle organization and biogenesis;2.05008344442305e-39!GO:0008380;RNA splicing;3.21055616632053e-39!GO:0045184;establishment of protein localization;3.20337113214602e-38!GO:0008104;protein localization;4.4150877092421e-38!GO:0046907;intracellular transport;1.16034600555697e-37!GO:0005740;mitochondrial envelope;2.25603948468682e-36!GO:0006397;mRNA processing;5.10482152040731e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.52353153109094e-35!GO:0006259;DNA metabolic process;1.65236187275366e-34!GO:0031966;mitochondrial membrane;3.66246015312838e-34!GO:0065003;macromolecular complex assembly;4.94952924995452e-34!GO:0019866;organelle inner membrane;8.28476707699928e-34!GO:0022607;cellular component assembly;4.28891928749611e-32!GO:0005743;mitochondrial inner membrane;1.54586433113708e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.55626224548027e-31!GO:0006886;intracellular protein transport;3.27921829480246e-30!GO:0005654;nucleoplasm;1.49584666556185e-28!GO:0007049;cell cycle;3.92687390944202e-28!GO:0005681;spliceosome;2.08380354723672e-27!GO:0003676;nucleic acid binding;5.52552551644784e-27!GO:0031980;mitochondrial lumen;3.18670330498688e-26!GO:0005759;mitochondrial matrix;3.18670330498688e-26!GO:0044445;cytosolic part;4.17967327251081e-25!GO:0000166;nucleotide binding;1.15244518063932e-24!GO:0015934;large ribosomal subunit;2.22972496086963e-24!GO:0006119;oxidative phosphorylation;4.61614010277558e-24!GO:0051649;establishment of cellular localization;1.96315379329558e-23!GO:0051641;cellular localization;2.49518508694376e-23!GO:0044455;mitochondrial membrane part;2.72605483632563e-23!GO:0000278;mitotic cell cycle;4.50433703535008e-23!GO:0044451;nucleoplasm part;1.00603321911651e-22!GO:0015935;small ribosomal subunit;1.2973218114656e-22!GO:0022402;cell cycle process;3.02643369889404e-22!GO:0006974;response to DNA damage stimulus;2.54087833393144e-21!GO:0012505;endomembrane system;3.59082869187458e-21!GO:0006457;protein folding;3.59082869187458e-21!GO:0005730;nucleolus;3.90365529264622e-21!GO:0016462;pyrophosphatase activity;1.6994796899921e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.57270251202696e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.20508953072485e-20!GO:0016070;RNA metabolic process;9.6161002091093e-20!GO:0005746;mitochondrial respiratory chain;1.00574732706746e-19!GO:0051186;cofactor metabolic process;1.50884366951001e-19!GO:0017111;nucleoside-triphosphatase activity;1.64395570075947e-19!GO:0005694;chromosome;8.1925091351035e-19!GO:0005783;endoplasmic reticulum;9.89312291883925e-19!GO:0022618;protein-RNA complex assembly;1.02295375082769e-18!GO:0005761;mitochondrial ribosome;1.51823648594065e-18!GO:0000313;organellar ribosome;1.51823648594065e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.00731893446009e-18!GO:0000087;M phase of mitotic cell cycle;5.37616275391319e-18!GO:0007067;mitosis;9.46365167647394e-18!GO:0022403;cell cycle phase;1.38334066242233e-17!GO:0050136;NADH dehydrogenase (quinone) activity;2.02817803019524e-17!GO:0003954;NADH dehydrogenase activity;2.02817803019524e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.02817803019524e-17!GO:0006281;DNA repair;3.13997053744503e-17!GO:0016874;ligase activity;3.81595978881947e-17!GO:0042254;ribosome biogenesis and assembly;4.69899279598242e-17!GO:0017076;purine nucleotide binding;1.09467126556738e-16!GO:0044432;endoplasmic reticulum part;1.23150063700133e-16!GO:0048770;pigment granule;1.26592800507444e-16!GO:0042470;melanosome;1.26592800507444e-16!GO:0044427;chromosomal part;1.36692427431629e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.02927662931293e-16!GO:0032553;ribonucleotide binding;2.0480012744922e-16!GO:0032555;purine ribonucleotide binding;2.0480012744922e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.62645616902711e-16!GO:0006605;protein targeting;2.76296224734664e-16!GO:0044265;cellular macromolecule catabolic process;3.90742238635748e-16!GO:0008134;transcription factor binding;4.37586757321471e-16!GO:0006260;DNA replication;5.34824863172443e-16!GO:0005635;nuclear envelope;6.75023191818735e-16!GO:0042775;organelle ATP synthesis coupled electron transport;9.71986531814548e-16!GO:0042773;ATP synthesis coupled electron transport;9.71986531814548e-16!GO:0006512;ubiquitin cycle;1.34810105914382e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.39422436988415e-15!GO:0045271;respiratory chain complex I;1.39422436988415e-15!GO:0005747;mitochondrial respiratory chain complex I;1.39422436988415e-15!GO:0008135;translation factor activity, nucleic acid binding;1.48126228893817e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.92526835147758e-15!GO:0009719;response to endogenous stimulus;2.69451041036375e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.76136206290051e-15!GO:0043285;biopolymer catabolic process;3.70598419128572e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.70598419128572e-15!GO:0000375;RNA splicing, via transesterification reactions;3.70598419128572e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.70598419128572e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.50742619704775e-15!GO:0006732;coenzyme metabolic process;5.70915269065492e-15!GO:0005524;ATP binding;6.04877299624705e-15!GO:0044248;cellular catabolic process;6.20780470587701e-15!GO:0051301;cell division;6.77529401760814e-15!GO:0030554;adenyl nucleotide binding;9.60683230774044e-15!GO:0032559;adenyl ribonucleotide binding;1.28247019150647e-14!GO:0009057;macromolecule catabolic process;1.33022959445006e-14!GO:0000279;M phase;1.78100126028511e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.48392151590452e-14!GO:0031965;nuclear membrane;2.90946408112619e-14!GO:0048193;Golgi vesicle transport;3.21608793383044e-14!GO:0051082;unfolded protein binding;3.37306531817089e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.09259340814726e-14!GO:0019941;modification-dependent protein catabolic process;4.29145882073346e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.29145882073346e-14!GO:0051276;chromosome organization and biogenesis;4.45582508470649e-14!GO:0044257;cellular protein catabolic process;7.2866292895532e-14!GO:0044453;nuclear membrane part;2.3971006999867e-13!GO:0009055;electron carrier activity;2.52120646345077e-13!GO:0005794;Golgi apparatus;3.53924383255204e-13!GO:0030163;protein catabolic process;8.39035635526646e-13!GO:0006399;tRNA metabolic process;1.04497652329422e-12!GO:0003743;translation initiation factor activity;4.00656540676017e-12!GO:0016604;nuclear body;6.61535816965066e-12!GO:0006413;translational initiation;9.59155301000978e-12!GO:0006913;nucleocytoplasmic transport;1.08301208797885e-11!GO:0005793;ER-Golgi intermediate compartment;1.11056125682683e-11!GO:0009259;ribonucleotide metabolic process;1.627840436391e-11!GO:0006364;rRNA processing;1.75229589484596e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.80783752415809e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.13742473073227e-11!GO:0000074;regulation of progression through cell cycle;2.21004072020025e-11!GO:0051169;nuclear transport;2.95760575950581e-11!GO:0051726;regulation of cell cycle;3.13499126728158e-11!GO:0005643;nuclear pore;3.62557237646918e-11!GO:0006163;purine nucleotide metabolic process;3.84814804974403e-11!GO:0005789;endoplasmic reticulum membrane;4.38830573258479e-11!GO:0016887;ATPase activity;5.35620684546386e-11!GO:0006446;regulation of translational initiation;5.40894265754695e-11!GO:0043412;biopolymer modification;6.02071917353e-11!GO:0016072;rRNA metabolic process;6.13586253408276e-11!GO:0042623;ATPase activity, coupled;6.83357415619856e-11!GO:0006323;DNA packaging;7.12142034815364e-11!GO:0016192;vesicle-mediated transport;1.42973237040442e-10!GO:0065004;protein-DNA complex assembly;1.52539595967848e-10!GO:0065002;intracellular protein transport across a membrane;1.85445231812923e-10!GO:0009150;purine ribonucleotide metabolic process;2.03915049626025e-10!GO:0003712;transcription cofactor activity;2.04683632187807e-10!GO:0008565;protein transporter activity;3.92861028311412e-10!GO:0004386;helicase activity;4.07909207130687e-10!GO:0006164;purine nucleotide biosynthetic process;6.02330317256006e-10!GO:0009260;ribonucleotide biosynthetic process;7.35243718884672e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.00000828069115e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.24173519945304e-10!GO:0004812;aminoacyl-tRNA ligase activity;8.24173519945304e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.24173519945304e-10!GO:0009060;aerobic respiration;8.37787144901323e-10!GO:0016491;oxidoreductase activity;1.05776859403744e-09!GO:0045333;cellular respiration;1.35605765468681e-09!GO:0006333;chromatin assembly or disassembly;1.42572008792512e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.51125357421135e-09!GO:0043038;amino acid activation;1.5494604305617e-09!GO:0006418;tRNA aminoacylation for protein translation;1.5494604305617e-09!GO:0043039;tRNA aminoacylation;1.5494604305617e-09!GO:0000785;chromatin;1.66708136269904e-09!GO:0046930;pore complex;1.72514540241856e-09!GO:0051188;cofactor biosynthetic process;1.95687681649244e-09!GO:0017038;protein import;2.07407412341088e-09!GO:0016607;nuclear speck;2.40180859485728e-09!GO:0006464;protein modification process;2.40180859485728e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.13082929428019e-09!GO:0006461;protein complex assembly;3.88758552406643e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.97339758659566e-09!GO:0006403;RNA localization;3.97339758659566e-09!GO:0050657;nucleic acid transport;3.97339758659566e-09!GO:0051236;establishment of RNA localization;3.97339758659566e-09!GO:0050658;RNA transport;3.97339758659566e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.06492965620934e-09!GO:0012501;programmed cell death;4.57126985849651e-09!GO:0009056;catabolic process;5.24072065306957e-09!GO:0009141;nucleoside triphosphate metabolic process;5.26107109278855e-09!GO:0006366;transcription from RNA polymerase II promoter;7.12687193197476e-09!GO:0006915;apoptosis;7.25086004473778e-09!GO:0003697;single-stranded DNA binding;7.40553346303351e-09!GO:0015630;microtubule cytoskeleton;7.66875146230733e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.00337724300793e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.00337724300793e-09!GO:0008026;ATP-dependent helicase activity;8.19222257855023e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.23699419136977e-09!GO:0006334;nucleosome assembly;1.41236098623032e-08!GO:0005788;endoplasmic reticulum lumen;1.45546677887038e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.59128233971567e-08!GO:0016853;isomerase activity;1.72413155561409e-08!GO:0006099;tricarboxylic acid cycle;1.86544900812136e-08!GO:0046356;acetyl-CoA catabolic process;1.86544900812136e-08!GO:0009117;nucleotide metabolic process;2.88430381559444e-08!GO:0051187;cofactor catabolic process;2.88430381559444e-08!GO:0008219;cell death;2.88430381559444e-08!GO:0016265;death;2.88430381559444e-08!GO:0043566;structure-specific DNA binding;3.65413420092833e-08!GO:0006084;acetyl-CoA metabolic process;4.40921010926927e-08!GO:0043687;post-translational protein modification;4.60188852619993e-08!GO:0031497;chromatin assembly;4.60188852619993e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.87363730491365e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.87363730491365e-08!GO:0006091;generation of precursor metabolites and energy;5.04549128431179e-08!GO:0009109;coenzyme catabolic process;5.22903139633941e-08!GO:0006261;DNA-dependent DNA replication;5.63938287516209e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.12224926958841e-08!GO:0015986;ATP synthesis coupled proton transport;7.56876057496237e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.56876057496237e-08!GO:0008639;small protein conjugating enzyme activity;7.70881567658409e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.77227657847827e-08!GO:0016740;transferase activity;9.94981066157713e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.00791991080743e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.00791991080743e-07!GO:0046034;ATP metabolic process;1.00791991080743e-07!GO:0030120;vesicle coat;1.19431528862982e-07!GO:0030662;coated vesicle membrane;1.19431528862982e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35367854877506e-07!GO:0004842;ubiquitin-protein ligase activity;1.37652834150247e-07!GO:0051028;mRNA transport;1.40259070903324e-07!GO:0016779;nucleotidyltransferase activity;1.4417284008708e-07!GO:0007005;mitochondrion organization and biogenesis;1.55730570683436e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.13513815215861e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.16191459617051e-07!GO:0009108;coenzyme biosynthetic process;2.16875148840317e-07!GO:0005813;centrosome;2.82173697188076e-07!GO:0005762;mitochondrial large ribosomal subunit;2.90422547839824e-07!GO:0000315;organellar large ribosomal subunit;2.90422547839824e-07!GO:0048475;coated membrane;2.90422547839824e-07!GO:0030117;membrane coat;2.90422547839824e-07!GO:0019787;small conjugating protein ligase activity;3.21123608960789e-07!GO:0019829;cation-transporting ATPase activity;3.47377715370727e-07!GO:0048523;negative regulation of cellular process;3.6607385787628e-07!GO:0000775;chromosome, pericentric region;3.94356030862433e-07!GO:0045259;proton-transporting ATP synthase complex;4.18311740689625e-07!GO:0005667;transcription factor complex;5.17139568927152e-07!GO:0050794;regulation of cellular process;6.04971891926699e-07!GO:0051246;regulation of protein metabolic process;6.91071118502021e-07!GO:0003924;GTPase activity;8.32636303551623e-07!GO:0000245;spliceosome assembly;8.51835916759684e-07!GO:0005815;microtubule organizing center;8.82002474449108e-07!GO:0051170;nuclear import;9.760034677976e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.1790328717381e-06!GO:0006754;ATP biosynthetic process;1.21124392698322e-06!GO:0006753;nucleoside phosphate metabolic process;1.21124392698322e-06!GO:0051329;interphase of mitotic cell cycle;1.30349681785734e-06!GO:0007010;cytoskeleton organization and biogenesis;1.5354343149972e-06!GO:0005819;spindle;1.53909934122159e-06!GO:0016881;acid-amino acid ligase activity;2.08060324265594e-06!GO:0006606;protein import into nucleus;2.44511465019101e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.67336430686941e-06!GO:0006752;group transfer coenzyme metabolic process;2.9462573429623e-06!GO:0005768;endosome;2.95355539601194e-06!GO:0016859;cis-trans isomerase activity;3.11897466891364e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.24656203295894e-06!GO:0051325;interphase;3.89230404098502e-06!GO:0044431;Golgi apparatus part;4.36339152235041e-06!GO:0003899;DNA-directed RNA polymerase activity;4.894415266659e-06!GO:0008092;cytoskeletal protein binding;5.25596191760589e-06!GO:0043623;cellular protein complex assembly;5.67585009645828e-06!GO:0004298;threonine endopeptidase activity;5.86619230904987e-06!GO:0000314;organellar small ribosomal subunit;6.5196145916731e-06!GO:0005763;mitochondrial small ribosomal subunit;6.5196145916731e-06!GO:0016568;chromatin modification;6.66201002487518e-06!GO:0006613;cotranslational protein targeting to membrane;6.74922038346483e-06!GO:0007051;spindle organization and biogenesis;7.19462030622081e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.25705897515509e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.45582153190274e-06!GO:0048519;negative regulation of biological process;9.65464331213711e-06!GO:0008094;DNA-dependent ATPase activity;9.65464331213711e-06!GO:0032446;protein modification by small protein conjugation;9.82527664232991e-06!GO:0005657;replication fork;1.44119953730674e-05!GO:0008654;phospholipid biosynthetic process;1.44119953730674e-05!GO:0051427;hormone receptor binding;1.4866432158848e-05!GO:0016567;protein ubiquitination;1.49454953733791e-05!GO:0031324;negative regulation of cellular metabolic process;1.61534706215379e-05!GO:0003724;RNA helicase activity;1.67431493407338e-05!GO:0016564;transcription repressor activity;1.70801735064729e-05!GO:0003714;transcription corepressor activity;1.81233195948558e-05!GO:0050789;regulation of biological process;2.02626217985474e-05!GO:0000151;ubiquitin ligase complex;2.17709993936437e-05!GO:0005798;Golgi-associated vesicle;2.19661972226899e-05!GO:0045454;cell redox homeostasis;2.2566621626837e-05!GO:0000075;cell cycle checkpoint;2.40982175610233e-05!GO:0045786;negative regulation of progression through cell cycle;2.68306914869889e-05!GO:0042981;regulation of apoptosis;2.7849934234387e-05!GO:0003713;transcription coactivator activity;2.94216994139297e-05!GO:0030867;rough endoplasmic reticulum membrane;3.15513997933924e-05!GO:0035257;nuclear hormone receptor binding;3.35512356812135e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.3882963634977e-05!GO:0006793;phosphorus metabolic process;3.50045938284426e-05!GO:0006796;phosphate metabolic process;3.50045938284426e-05!GO:0016126;sterol biosynthetic process;3.52763215814592e-05!GO:0043021;ribonucleoprotein binding;3.57902507226211e-05!GO:0031252;leading edge;3.60935901719074e-05!GO:0043067;regulation of programmed cell death;3.72288498519082e-05!GO:0043069;negative regulation of programmed cell death;3.81421701599645e-05!GO:0044440;endosomal part;3.81421701599645e-05!GO:0010008;endosome membrane;3.81421701599645e-05!GO:0016787;hydrolase activity;3.99801779391488e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.43956570143628e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.5416601836339e-05!GO:0005048;signal sequence binding;4.5416601836339e-05!GO:0043066;negative regulation of apoptosis;4.57377318006671e-05!GO:0030029;actin filament-based process;5.35053931286543e-05!GO:0031968;organelle outer membrane;5.65674166061555e-05!GO:0005770;late endosome;5.88880585053537e-05!GO:0019867;outer membrane;5.93388483309703e-05!GO:0005791;rough endoplasmic reticulum;6.88136320686192e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.41919430412944e-05!GO:0000139;Golgi membrane;7.98987488072695e-05!GO:0006916;anti-apoptosis;8.03387552806812e-05!GO:0016563;transcription activator activity;8.93648129382439e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.0309678265249e-05!GO:0016310;phosphorylation;9.51672187874511e-05!GO:0008033;tRNA processing;9.69116367534244e-05!GO:0009165;nucleotide biosynthetic process;9.87475506306041e-05!GO:0009892;negative regulation of metabolic process;0.000101058849887649!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00012563561665171!GO:0000786;nucleosome;0.000128364666896142!GO:0006612;protein targeting to membrane;0.000136539412213817!GO:0043681;protein import into mitochondrion;0.000140335908953366!GO:0005741;mitochondrial outer membrane;0.00016453087814727!GO:0016741;transferase activity, transferring one-carbon groups;0.000168682388079588!GO:0006626;protein targeting to mitochondrion;0.000171185878761025!GO:0016481;negative regulation of transcription;0.000189479014620533!GO:0008168;methyltransferase activity;0.000197516266468575!GO:0044452;nucleolar part;0.000205277199149442!GO:0051052;regulation of DNA metabolic process;0.000205277199149442!GO:0006302;double-strand break repair;0.000206250796391349!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000221526122703091!GO:0016023;cytoplasmic membrane-bound vesicle;0.000243086259059008!GO:0005525;GTP binding;0.000250157760403487!GO:0031988;membrane-bound vesicle;0.000263964246573479!GO:0004576;oligosaccharyl transferase activity;0.000275605939770356!GO:0019222;regulation of metabolic process;0.000281289829931938!GO:0030133;transport vesicle;0.000293570699792757!GO:0019843;rRNA binding;0.000295486656341267!GO:0033116;ER-Golgi intermediate compartment membrane;0.000299264274211363!GO:0006414;translational elongation;0.000318331773159606!GO:0008250;oligosaccharyl transferase complex;0.000337118101381384!GO:0008610;lipid biosynthetic process;0.000348478997968894!GO:0003729;mRNA binding;0.000356857502026992!GO:0051168;nuclear export;0.0003708502070974!GO:0006383;transcription from RNA polymerase III promoter;0.000372460372085048!GO:0000776;kinetochore;0.000375787142288551!GO:0006695;cholesterol biosynthetic process;0.00038603518418933!GO:0046474;glycerophospholipid biosynthetic process;0.000392896000224556!GO:0016363;nuclear matrix;0.000397371755842158!GO:0019752;carboxylic acid metabolic process;0.000407386618457122!GO:0031982;vesicle;0.000421022180071784!GO:0006082;organic acid metabolic process;0.000426706792789907!GO:0050662;coenzyme binding;0.000452859041347551!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000462338329544453!GO:0051789;response to protein stimulus;0.000481730415132424!GO:0006986;response to unfolded protein;0.000481730415132424!GO:0000059;protein import into nucleus, docking;0.000484420469215364!GO:0031410;cytoplasmic vesicle;0.000492482202226681!GO:0003684;damaged DNA binding;0.000492835458903518!GO:0030663;COPI coated vesicle membrane;0.000495785132159168!GO:0030126;COPI vesicle coat;0.000495785132159168!GO:0019899;enzyme binding;0.000508287406742285!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000520543578447991!GO:0003690;double-stranded DNA binding;0.000523688599471264!GO:0005885;Arp2/3 protein complex;0.000530936515366681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548923214566662!GO:0044262;cellular carbohydrate metabolic process;0.000602714716184433!GO:0005769;early endosome;0.000620131481677281!GO:0008186;RNA-dependent ATPase activity;0.000630679598928809!GO:0016049;cell growth;0.000657460149210646!GO:0008361;regulation of cell size;0.000664285581566994!GO:0051920;peroxiredoxin activity;0.000745829943930012!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000748209186376875!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000748209186376875!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000748209186376875!GO:0007088;regulation of mitosis;0.000762454143025064!GO:0030880;RNA polymerase complex;0.000772561534719498!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000781310157922971!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00078139426149271!GO:0051287;NAD binding;0.000781614714063605!GO:0046483;heterocycle metabolic process;0.000806395929136701!GO:0003678;DNA helicase activity;0.00082364634339587!GO:0006839;mitochondrial transport;0.000988747192784263!GO:0005905;coated pit;0.00101213551425752!GO:0018196;peptidyl-asparagine modification;0.001036740972267!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.001036740972267!GO:0007006;mitochondrial membrane organization and biogenesis;0.00106925525779168!GO:0051252;regulation of RNA metabolic process;0.00110899361688551!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00112246767552224!GO:0015002;heme-copper terminal oxidase activity;0.00112246767552224!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00112246767552224!GO:0004129;cytochrome-c oxidase activity;0.00112246767552224!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00115588865803052!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00115588865803052!GO:0005684;U2-dependent spliceosome;0.00118103898003146!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00119273077318758!GO:0001558;regulation of cell growth;0.00119333008660003!GO:0007093;mitotic cell cycle checkpoint;0.00125355256542481!GO:0035258;steroid hormone receptor binding;0.00131174063161283!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00131363736756712!GO:0042802;identical protein binding;0.0013659511311893!GO:0006310;DNA recombination;0.00137280110092518!GO:0030137;COPI-coated vesicle;0.00138611107892494!GO:0005773;vacuole;0.00140518503367259!GO:0048500;signal recognition particle;0.00143290551533131!GO:0032561;guanyl ribonucleotide binding;0.0014845485755341!GO:0019001;guanyl nucleotide binding;0.0014845485755341!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00154245464264426!GO:0004527;exonuclease activity;0.00163915501336519!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0016631380701485!GO:0004004;ATP-dependent RNA helicase activity;0.00172017723708783!GO:0043284;biopolymer biosynthetic process;0.0017491195849646!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00183892094011718!GO:0000428;DNA-directed RNA polymerase complex;0.00183892094011718!GO:0006950;response to stress;0.00186090001633635!GO:0007052;mitotic spindle organization and biogenesis;0.00188453328882438!GO:0051540;metal cluster binding;0.00203028362227737!GO:0051536;iron-sulfur cluster binding;0.00203028362227737!GO:0006118;electron transport;0.00204787800861689!GO:0015631;tubulin binding;0.00205935833240911!GO:0031072;heat shock protein binding;0.00215122263060004!GO:0009112;nucleobase metabolic process;0.00215825425487066!GO:0051539;4 iron, 4 sulfur cluster binding;0.00220348681092538!GO:0008312;7S RNA binding;0.00225895032349902!GO:0000049;tRNA binding;0.00234962262130524!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0023605984741042!GO:0008139;nuclear localization sequence binding;0.00241118763085749!GO:0006275;regulation of DNA replication;0.00247657222927339!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00254363125168121!GO:0043488;regulation of mRNA stability;0.00260564532860229!GO:0043487;regulation of RNA stability;0.00260564532860229!GO:0006891;intra-Golgi vesicle-mediated transport;0.00264541697641853!GO:0006402;mRNA catabolic process;0.00291192785790271!GO:0046489;phosphoinositide biosynthetic process;0.0029339288168477!GO:0006740;NADPH regeneration;0.00294787416622189!GO:0006098;pentose-phosphate shunt;0.00294787416622189!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0029511647556218!GO:0005874;microtubule;0.00299455360163923!GO:0048037;cofactor binding;0.0030978704094749!GO:0009116;nucleoside metabolic process;0.00316576916144331!GO:0016044;membrane organization and biogenesis;0.0033310005048885!GO:0007059;chromosome segregation;0.00333940751753707!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00348148816534027!GO:0045047;protein targeting to ER;0.00348148816534027!GO:0031124;mRNA 3'-end processing;0.0035350130158223!GO:0030132;clathrin coat of coated pit;0.00362482584693742!GO:0008180;signalosome;0.00367023039122779!GO:0030134;ER to Golgi transport vesicle;0.00371855903177231!GO:0003682;chromatin binding;0.00373914899272507!GO:0046467;membrane lipid biosynthetic process;0.00388550927021252!GO:0030521;androgen receptor signaling pathway;0.00393460159298052!GO:0006352;transcription initiation;0.00396423896551777!GO:0015629;actin cytoskeleton;0.00396423896551777!GO:0032508;DNA duplex unwinding;0.00409225385063393!GO:0032392;DNA geometric change;0.00409225385063393!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00411392323811804!GO:0030658;transport vesicle membrane;0.00411392323811804!GO:0000323;lytic vacuole;0.00436523295465114!GO:0005764;lysosome;0.00436523295465114!GO:0051101;regulation of DNA binding;0.00442999302506493!GO:0030176;integral to endoplasmic reticulum membrane;0.00459154540142841!GO:0006595;polyamine metabolic process;0.00474287152470458!GO:0005637;nuclear inner membrane;0.00475330420703701!GO:0030127;COPII vesicle coat;0.00487330455098631!GO:0012507;ER to Golgi transport vesicle membrane;0.00487330455098631!GO:0004518;nuclease activity;0.0054546516261499!GO:0006979;response to oxidative stress;0.0054546516261499!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00565126905060711!GO:0006733;oxidoreduction coenzyme metabolic process;0.00565126905060711!GO:0016272;prefoldin complex;0.00567470339185314!GO:0051087;chaperone binding;0.00573144544827567!GO:0005758;mitochondrial intermembrane space;0.00581124323077449!GO:0000082;G1/S transition of mitotic cell cycle;0.00584543427576845!GO:0006778;porphyrin metabolic process;0.00592611978744005!GO:0033013;tetrapyrrole metabolic process;0.00592611978744005!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00615363009506183!GO:0006268;DNA unwinding during replication;0.00628901951547139!GO:0031970;organelle envelope lumen;0.00631933887107906!GO:0003779;actin binding;0.00646561850196277!GO:0022890;inorganic cation transmembrane transporter activity;0.00647510391665583!GO:0030118;clathrin coat;0.00647510391665583!GO:0016251;general RNA polymerase II transcription factor activity;0.00652767647457342!GO:0016408;C-acyltransferase activity;0.00655184716397546!GO:0006401;RNA catabolic process;0.00688261996574654!GO:0016197;endosome transport;0.00701508246713285!GO:0006007;glucose catabolic process;0.00711953230254021!GO:0016860;intramolecular oxidoreductase activity;0.0072351183978574!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00755216645029414!GO:0007050;cell cycle arrest;0.00755976235826162!GO:0006520;amino acid metabolic process;0.00762056969410198!GO:0000339;RNA cap binding;0.00775943749568762!GO:0004177;aminopeptidase activity;0.0077758772908616!GO:0006144;purine base metabolic process;0.0077803429791688!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00784641429631641!GO:0009303;rRNA transcription;0.0079536549198059!GO:0065007;biological regulation;0.00823808778649191!GO:0001725;stress fiber;0.0084418177700496!GO:0032432;actin filament bundle;0.0084418177700496!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0085671027397675!GO:0017166;vinculin binding;0.00860820744309928!GO:0048471;perinuclear region of cytoplasm;0.0086350964739153!GO:0003746;translation elongation factor activity;0.00876726128628852!GO:0006220;pyrimidine nucleotide metabolic process;0.00881997456694611!GO:0043022;ribosome binding;0.0090335843766489!GO:0042770;DNA damage response, signal transduction;0.00938779565136017!GO:0051128;regulation of cellular component organization and biogenesis;0.00938779565136017!GO:0005832;chaperonin-containing T-complex;0.00959230693271803!GO:0030660;Golgi-associated vesicle membrane;0.00973851218672617!GO:0005876;spindle microtubule;0.00987171458034196!GO:0004674;protein serine/threonine kinase activity;0.0099943431296051!GO:0005869;dynactin complex;0.0100213411108624!GO:0007346;regulation of progression through mitotic cell cycle;0.0100213411108624!GO:0005865;striated muscle thin filament;0.0100477680905089!GO:0008629;induction of apoptosis by intracellular signals;0.0101731881185566!GO:0001726;ruffle;0.0105204337824527!GO:0006611;protein export from nucleus;0.0113524766095227!GO:0005856;cytoskeleton;0.0114501759391395!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0114501759391395!GO:0006739;NADP metabolic process;0.0115152833970272!GO:0000910;cytokinesis;0.0117372377043922!GO:0006650;glycerophospholipid metabolic process;0.0117661461381675!GO:0004003;ATP-dependent DNA helicase activity;0.0118624242283202!GO:0048522;positive regulation of cellular process;0.0119898720885516!GO:0050681;androgen receptor binding;0.0121751728452624!GO:0048487;beta-tubulin binding;0.0122351686299256!GO:0030027;lamellipodium;0.0122351686299256!GO:0006289;nucleotide-excision repair;0.0127856615157869!GO:0031323;regulation of cellular metabolic process;0.012987911713487!GO:0006405;RNA export from nucleus;0.0131108042702136!GO:0016407;acetyltransferase activity;0.0131625915578777!GO:0030041;actin filament polymerization;0.0133727500730911!GO:0030518;steroid hormone receptor signaling pathway;0.0138178506575599!GO:0000922;spindle pole;0.0138644750129138!GO:0000792;heterochromatin;0.0140541116218436!GO:0048144;fibroblast proliferation;0.0143447118752699!GO:0048145;regulation of fibroblast proliferation;0.0143447118752699!GO:0040029;regulation of gene expression, epigenetic;0.0145661512187849!GO:0031625;ubiquitin protein ligase binding;0.0146579830774242!GO:0007017;microtubule-based process;0.0147258650470888!GO:0003711;transcription elongation regulator activity;0.0151389044795388!GO:0006779;porphyrin biosynthetic process;0.0151582223851284!GO:0033014;tetrapyrrole biosynthetic process;0.0151582223851284!GO:0009124;nucleoside monophosphate biosynthetic process;0.0151896432167567!GO:0009123;nucleoside monophosphate metabolic process;0.0151896432167567!GO:0031123;RNA 3'-end processing;0.0153994739207608!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0155750346684886!GO:0031570;DNA integrity checkpoint;0.0156852019953977!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0157482453405841!GO:0000228;nuclear chromosome;0.0157489279154688!GO:0000096;sulfur amino acid metabolic process;0.015806698407875!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0163594864433403!GO:0048146;positive regulation of fibroblast proliferation;0.0163905711759118!GO:0006769;nicotinamide metabolic process;0.0164540251067436!GO:0006892;post-Golgi vesicle-mediated transport;0.0164739254005795!GO:0031902;late endosome membrane;0.0165983423778352!GO:0030145;manganese ion binding;0.0169390820584961!GO:0006284;base-excision repair;0.0169504671531373!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0171354262532926!GO:0000178;exosome (RNase complex);0.0178234816137765!GO:0015992;proton transport;0.0178253165451404!GO:0007021;tubulin folding;0.0179333490242455!GO:0006350;transcription;0.0179494373365735!GO:0065009;regulation of a molecular function;0.0179763881564267!GO:0005862;muscle thin filament tropomyosin;0.0180862072748623!GO:0043596;nuclear replication fork;0.0181326506511968!GO:0015036;disulfide oxidoreductase activity;0.0181462477807955!GO:0016584;nucleosome positioning;0.0186797011227469!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0186914851976629!GO:0051098;regulation of binding;0.0188501492885572!GO:0005669;transcription factor TFIID complex;0.0188501492885572!GO:0042168;heme metabolic process;0.0190316967513963!GO:0046112;nucleobase biosynthetic process;0.0190486957908479!GO:0006818;hydrogen transport;0.0192417672603338!GO:0006378;mRNA polyadenylation;0.0194491493342526!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0194820962311954!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0198385663289053!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0199829747323049!GO:0031901;early endosome membrane;0.020159039057761!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0203373583599621!GO:0030508;thiol-disulfide exchange intermediate activity;0.0211926609210713!GO:0008299;isoprenoid biosynthetic process;0.0212413235255493!GO:0009081;branched chain family amino acid metabolic process;0.0214168584884522!GO:0033673;negative regulation of kinase activity;0.0215470829385855!GO:0006469;negative regulation of protein kinase activity;0.0215470829385855!GO:0009451;RNA modification;0.0215531697869986!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0218544592820079!GO:0046128;purine ribonucleoside metabolic process;0.0219684129656386!GO:0042278;purine nucleoside metabolic process;0.0219684129656386!GO:0045892;negative regulation of transcription, DNA-dependent;0.0224520289152764!GO:0004448;isocitrate dehydrogenase activity;0.0228127177012132!GO:0040008;regulation of growth;0.0229299734380669!GO:0000152;nuclear ubiquitin ligase complex;0.0229629080593097!GO:0006509;membrane protein ectodomain proteolysis;0.0231602031593471!GO:0033619;membrane protein proteolysis;0.0231602031593471!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0232971132521574!GO:0015399;primary active transmembrane transporter activity;0.0232971132521574!GO:0006541;glutamine metabolic process;0.0233402363559604!GO:0031529;ruffle organization and biogenesis;0.023430240493534!GO:0016125;sterol metabolic process;0.0236002673089738!GO:0006506;GPI anchor biosynthetic process;0.0236378813441816!GO:0032984;macromolecular complex disassembly;0.0245656983426872!GO:0030384;phosphoinositide metabolic process;0.0246412809288402!GO:0007040;lysosome organization and biogenesis;0.025664750874866!GO:0051348;negative regulation of transferase activity;0.0257364885153643!GO:0000287;magnesium ion binding;0.0257364885153643!GO:0003756;protein disulfide isomerase activity;0.026494407036525!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.026494407036525!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.026705427002794!GO:0030119;AP-type membrane coat adaptor complex;0.0267733544760635!GO:0006505;GPI anchor metabolic process;0.0267889119419615!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270258184329502!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0273110577391535!GO:0010257;NADH dehydrogenase complex assembly;0.0273110577391535!GO:0033108;mitochondrial respiratory chain complex assembly;0.0273110577391535!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0273664362075557!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0273664362075557!GO:0006376;mRNA splice site selection;0.0278418377088147!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0278418377088147!GO:0035035;histone acetyltransferase binding;0.0278819503338567!GO:0009161;ribonucleoside monophosphate metabolic process;0.0281783026335103!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0281783026335103!GO:0045941;positive regulation of transcription;0.0284735706376433!GO:0006720;isoprenoid metabolic process;0.0286212586547403!GO:0030032;lamellipodium biogenesis;0.0288008914949516!GO:0000084;S phase of mitotic cell cycle;0.0290052036228008!GO:0004532;exoribonuclease activity;0.0295463826828966!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0295463826828966!GO:0043414;biopolymer methylation;0.0295463826828966!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0295463826828966!GO:0000725;recombinational repair;0.0295463826828966!GO:0000724;double-strand break repair via homologous recombination;0.0295463826828966!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0296705247844833!GO:0006497;protein amino acid lipidation;0.0297081868932653!GO:0042393;histone binding;0.0299756261621888!GO:0008154;actin polymerization and/or depolymerization;0.0303620150590812!GO:0035267;NuA4 histone acetyltransferase complex;0.0319412333454425!GO:0042158;lipoprotein biosynthetic process;0.0320327931605698!GO:0006767;water-soluble vitamin metabolic process;0.0325559602546199!GO:0033559;unsaturated fatty acid metabolic process;0.0326342514472339!GO:0006636;unsaturated fatty acid biosynthetic process;0.0326342514472339!GO:0050178;phenylpyruvate tautomerase activity;0.0327067805548285!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0336894568666511!GO:0045039;protein import into mitochondrial inner membrane;0.0336894568666511!GO:0030125;clathrin vesicle coat;0.0344373659431707!GO:0030665;clathrin coated vesicle membrane;0.0344373659431707!GO:0030911;TPR domain binding;0.0345425350041118!GO:0005784;translocon complex;0.0345425350041118!GO:0031406;carboxylic acid binding;0.0349259787525497!GO:0008408;3'-5' exonuclease activity;0.0353842511547103!GO:0008022;protein C-terminus binding;0.0354345576643794!GO:0032259;methylation;0.0355821163034914!GO:0009119;ribonucleoside metabolic process;0.0356063768061995!GO:0005100;Rho GTPase activator activity;0.035664321157775!GO:0000077;DNA damage checkpoint;0.0360717369462808!GO:0006607;NLS-bearing substrate import into nucleus;0.0361228020855961!GO:0000209;protein polyubiquitination;0.0365091401702578!GO:0031371;ubiquitin conjugating enzyme complex;0.0366787745334681!GO:0043241;protein complex disassembly;0.0367951813964694!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0368147288687857!GO:0043601;nuclear replisome;0.0368147288687857!GO:0030894;replisome;0.0368147288687857!GO:0032200;telomere organization and biogenesis;0.0372131812087428!GO:0000723;telomere maintenance;0.0372131812087428!GO:0007243;protein kinase cascade;0.0376048832598002!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0378426605100813!GO:0048468;cell development;0.0378732924927242!GO:0008538;proteasome activator activity;0.0392361318091739!GO:0043624;cellular protein complex disassembly;0.0393472266059517!GO:0031543;peptidyl-proline dioxygenase activity;0.0397301846339962!GO:0006338;chromatin remodeling;0.0399241981010871!GO:0006066;alcohol metabolic process;0.0405159771696984!GO:0045045;secretory pathway;0.0405470823795993!GO:0019318;hexose metabolic process;0.0405523551282717!GO:0005996;monosaccharide metabolic process;0.0407236794923996!GO:0044438;microbody part;0.0409748176698!GO:0044439;peroxisomal part;0.0409748176698!GO:0045893;positive regulation of transcription, DNA-dependent;0.0420699344970981!GO:0030496;midbody;0.0422000437538902!GO:0019206;nucleoside kinase activity;0.0426149113887163!GO:0030522;intracellular receptor-mediated signaling pathway;0.0426485314252485!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0433183512294386!GO:0019798;procollagen-proline dioxygenase activity;0.0433183512294386!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0440770239571631!GO:0033043;regulation of organelle organization and biogenesis;0.0440770239571631!GO:0046966;thyroid hormone receptor binding;0.0441598137514333!GO:0030131;clathrin adaptor complex;0.0441598137514333!GO:0030433;ER-associated protein catabolic process;0.0443169093787102!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0443169093787102!GO:0003702;RNA polymerase II transcription factor activity;0.0448319501771805!GO:0008652;amino acid biosynthetic process;0.0448499709721348!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0449842898497038!GO:0030031;cell projection biogenesis;0.0453368428822723!GO:0004680;casein kinase activity;0.0453707373504295!GO:0006417;regulation of translation;0.0455230670072612!GO:0005680;anaphase-promoting complex;0.0456817576942238!GO:0008097;5S rRNA binding;0.045983481772012!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0461041339505886!GO:0006783;heme biosynthetic process;0.0477081747782918!GO:0031418;L-ascorbic acid binding;0.0478937076284641!GO:0016417;S-acyltransferase activity;0.0480324472655189!GO:0000123;histone acetyltransferase complex;0.0485846335331269!GO:0019362;pyridine nucleotide metabolic process;0.0486616235013404!GO:0030833;regulation of actin filament polymerization;0.0492830318088329!GO:0046365;monosaccharide catabolic process;0.0495265672799627!GO:0008632;apoptotic program;0.049773121453498!GO:0007034;vacuolar transport;0.0498523962612695 | |||
|sample_id=11455 | |sample_id=11455 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=RXR{A,B,G}:1.30564494981;NKX3-1:1.17634318144;GFI1:1.12465819133;GZF1:1.06602547583;TFAP4:1.05071350239;GFI1B:1.01987577525;NKX2-2,8:0.987514708068;SRF:0.962172067791;HES1:0.959239289932;NR3C1:0.95668273311;PAX4:0.934193119061;UFEwm:0.925374441304;YY1:0.891341919059;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.880413477104;E2F1..5:0.87466098888;EN1,2:0.861923409341;AIRE:0.853795534151;ALX4:0.853451133416;PBX1:0.837724526632;POU6F1:0.8169628355;HOX{A5,B5}:0.765421523241;NANOG{mouse}:0.741634969873;TOPORS:0.73676176613;ESRRA:0.700028264106;NKX2-1,4:0.683976018064;MYBL2:0.673265361784;POU3F1..4:0.65300633442;HOX{A4,D4}:0.641752168172;RXRA_VDR{dimer}:0.633649830991;NFY{A,B,C}:0.630596460776;NR5A1,2:0.628839486653;AR:0.626609340185;FOXP1:0.62382025309;TAL1_TCF{3,4,12}:0.600564182545;HSF1,2:0.598065941135;TLX1..3_NFIC{dimer}:0.579557314815;XBP1:0.569611099918;PDX1:0.563877509234;NR1H4:0.548489394499;TEAD1:0.535941277335;TFDP1:0.535837807307;TBP:0.5220220586;IKZF1:0.516521528678;ESR1:0.510694625726;KLF4:0.501887977725;SOX17:0.501776337317;EVI1:0.501470449887;ZNF238:0.494319792437;ZNF143:0.488594546822;ELK1,4_GABP{A,B1}:0.468619545858;EBF1:0.45903557857;FOXD3:0.457738827313;GLI1..3:0.450940599798;PAX5:0.439810885786;NFE2L1:0.438629453234;ZIC1..3:0.416052482662;ATF6:0.404132764316;POU1F1:0.387661621464;MEF2{A,B,C,D}:0.370571154768;TBX4,5:0.344303435473;NRF1:0.343598258117;MZF1:0.31366108639;STAT1,3:0.304217935863;NFIX:0.285394804671;MYB:0.264148895697;GTF2A1,2:0.260601061296;TFCP2:0.259903600367;FOXL1:0.259830860566;CDC5L:0.253104556294;ZNF423:0.251899629177;FOXM1:0.244140598771;XCPE1{core}:0.239550733738;AHR_ARNT_ARNT2:0.229797729729;PAX8:0.218072442984;POU2F1..3:0.191343934605;STAT5{A,B}:0.175252226298;SPZ1:0.173775930793;T:0.150901547909;GTF2I:0.145528662962;CDX1,2,4:0.127273888676;MYOD1:0.111759072359;ZNF384:0.0903418547356;NR6A1:0.080897810097;TFAP2{A,C}:0.0790249968187;PAX3,7:0.0777668739265;ZBTB6:0.0647538579104;ZBTB16:0.0579782964813;PRRX1,2:0.0556269387916;NKX6-1,2:0.0490791523874;TP53:0.0471773104717;STAT2,4,6:0.0423649531539;HNF4A_NR2F1,2:0.0420698784993;HIC1:0.0231209400336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0209287314516;EGR1..3:0.020562161037;GATA4:0.0147592339194;PITX1..3:0.0108848993899;GCM1,2:0.00831391687667;BACH2:0.00264753336447;bHLH_family:-0.00523829649819;NHLH1,2:-0.0116770971077;PATZ1:-0.0118449666277;HIF1A:-0.01287675522;ONECUT1,2:-0.0220132566732;LHX3,4:-0.0242846579453;HNF1A:-0.0296001762574;NKX2-3_NKX2-5:-0.0312348742375;CREB1:-0.0404205908411;SOX5:-0.0501139582325;ALX1:-0.0774659428442;SP1:-0.101273179161;MAZ:-0.101310818742;NFATC1..3:-0.103527765073;FOS_FOS{B,L1}_JUN{B,D}:-0.11535844471;RBPJ:-0.139525922852;ZNF148:-0.144928412479;BREu{core}:-0.145169062853;PAX1,9:-0.157019119736;LEF1_TCF7_TCF7L1,2:-0.158176038799;HOXA9_MEIS1:-0.161766788466;ZFP161:-0.169357201977;MYFfamily:-0.173487370218;HLF:-0.174810244257;PRDM1:-0.185350144664;CEBPA,B_DDIT3:-0.193225892881;ELF1,2,4:-0.207168648355;DBP:-0.2094187125;ARID5B:-0.212040912484;HAND1,2:-0.216074272062;MTF1:-0.220053390734;SMAD1..7,9:-0.228582451392;TGIF1:-0.229141865717;NFE2L2:-0.23532756797;FOXP3:-0.243956195723;RFX1:-0.248632812256;TFAP2B:-0.256249253393;MAFB:-0.295142486274;RREB1:-0.308563683743;NFE2:-0.314479628192;MTE{core}:-0.32550035303;FOSL2:-0.326789092701;NKX3-2:-0.331479303753;RUNX1..3:-0.332508104286;SOX{8,9,10}:-0.344873880526;PPARG:-0.346988378528;RFX2..5_RFXANK_RFXAP:-0.34909251048;TEF:-0.370588294756;CUX2:-0.385070245047;REST:-0.401460691946;MED-1{core}:-0.40790443202;JUN:-0.416235178135;CRX:-0.416504900935;NFKB1_REL_RELA:-0.422014042643;PAX6:-0.450274096638;ADNP_IRX_SIX_ZHX:-0.458671391409;IKZF2:-0.459645598762;SPI1:-0.476412679945;BPTF:-0.494746664269;DMAP1_NCOR{1,2}_SMARC:-0.519659124293;POU5F1:-0.544405287798;HMX1:-0.563152986661;SPIB:-0.598838303918;OCT4_SOX2{dimer}:-0.60550059819;ATF4:-0.610296407593;ATF5_CREB3:-0.620040340472;PAX2:-0.624019340283;VSX1,2:-0.629473826589;ETS1,2:-0.636922170737;TLX2:-0.653256649792;IRF7:-0.672752889195;IRF1,2:-0.673504093411;NANOG:-0.67468470288;SNAI1..3:-0.676654027067;EP300:-0.680035585435;NFIL3:-0.707495350265;ATF2:-0.740089494288;SOX2:-0.745362996001;FOXO1,3,4:-0.7501982402;GATA6:-0.764516308409;RORA:-0.774573218058;FOX{I1,J2}:-0.866523749424;FOXA2:-0.870588492146;FOX{F1,F2,J1}:-0.876467184876;LMO2:-0.880719086535;SREBF1,2:-0.907837186258;HMGA1,2:-0.933794502241;FOX{D1,D2}:-0.961945603093;HBP1_HMGB_SSRP1_UBTF:-0.9877093808;HOX{A6,A7,B6,B7}:-1.03629139394;FOXN1:-1.0494616731;ZEB1:-1.05755967633;FOXQ1:-1.14118919103 | |top_motifs=RXR{A,B,G}:1.30564494981;NKX3-1:1.17634318144;GFI1:1.12465819133;GZF1:1.06602547583;TFAP4:1.05071350239;GFI1B:1.01987577525;NKX2-2,8:0.987514708068;SRF:0.962172067791;HES1:0.959239289932;NR3C1:0.95668273311;PAX4:0.934193119061;UFEwm:0.925374441304;YY1:0.891341919059;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.880413477104;E2F1..5:0.87466098888;EN1,2:0.861923409341;AIRE:0.853795534151;ALX4:0.853451133416;PBX1:0.837724526632;POU6F1:0.8169628355;HOX{A5,B5}:0.765421523241;NANOG{mouse}:0.741634969873;TOPORS:0.73676176613;ESRRA:0.700028264106;NKX2-1,4:0.683976018064;MYBL2:0.673265361784;POU3F1..4:0.65300633442;HOX{A4,D4}:0.641752168172;RXRA_VDR{dimer}:0.633649830991;NFY{A,B,C}:0.630596460776;NR5A1,2:0.628839486653;AR:0.626609340185;FOXP1:0.62382025309;TAL1_TCF{3,4,12}:0.600564182545;HSF1,2:0.598065941135;TLX1..3_NFIC{dimer}:0.579557314815;XBP1:0.569611099918;PDX1:0.563877509234;NR1H4:0.548489394499;TEAD1:0.535941277335;TFDP1:0.535837807307;TBP:0.5220220586;IKZF1:0.516521528678;ESR1:0.510694625726;KLF4:0.501887977725;SOX17:0.501776337317;EVI1:0.501470449887;ZNF238:0.494319792437;ZNF143:0.488594546822;ELK1,4_GABP{A,B1}:0.468619545858;EBF1:0.45903557857;FOXD3:0.457738827313;GLI1..3:0.450940599798;PAX5:0.439810885786;NFE2L1:0.438629453234;ZIC1..3:0.416052482662;ATF6:0.404132764316;POU1F1:0.387661621464;MEF2{A,B,C,D}:0.370571154768;TBX4,5:0.344303435473;NRF1:0.343598258117;MZF1:0.31366108639;STAT1,3:0.304217935863;NFIX:0.285394804671;MYB:0.264148895697;GTF2A1,2:0.260601061296;TFCP2:0.259903600367;FOXL1:0.259830860566;CDC5L:0.253104556294;ZNF423:0.251899629177;FOXM1:0.244140598771;XCPE1{core}:0.239550733738;AHR_ARNT_ARNT2:0.229797729729;PAX8:0.218072442984;POU2F1..3:0.191343934605;STAT5{A,B}:0.175252226298;SPZ1:0.173775930793;T:0.150901547909;GTF2I:0.145528662962;CDX1,2,4:0.127273888676;MYOD1:0.111759072359;ZNF384:0.0903418547356;NR6A1:0.080897810097;TFAP2{A,C}:0.0790249968187;PAX3,7:0.0777668739265;ZBTB6:0.0647538579104;ZBTB16:0.0579782964813;PRRX1,2:0.0556269387916;NKX6-1,2:0.0490791523874;TP53:0.0471773104717;STAT2,4,6:0.0423649531539;HNF4A_NR2F1,2:0.0420698784993;HIC1:0.0231209400336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0209287314516;EGR1..3:0.020562161037;GATA4:0.0147592339194;PITX1..3:0.0108848993899;GCM1,2:0.00831391687667;BACH2:0.00264753336447;bHLH_family:-0.00523829649819;NHLH1,2:-0.0116770971077;PATZ1:-0.0118449666277;HIF1A:-0.01287675522;ONECUT1,2:-0.0220132566732;LHX3,4:-0.0242846579453;HNF1A:-0.0296001762574;NKX2-3_NKX2-5:-0.0312348742375;CREB1:-0.0404205908411;SOX5:-0.0501139582325;ALX1:-0.0774659428442;SP1:-0.101273179161;MAZ:-0.101310818742;NFATC1..3:-0.103527765073;FOS_FOS{B,L1}_JUN{B,D}:-0.11535844471;RBPJ:-0.139525922852;ZNF148:-0.144928412479;BREu{core}:-0.145169062853;PAX1,9:-0.157019119736;LEF1_TCF7_TCF7L1,2:-0.158176038799;HOXA9_MEIS1:-0.161766788466;ZFP161:-0.169357201977;MYFfamily:-0.173487370218;HLF:-0.174810244257;PRDM1:-0.185350144664;CEBPA,B_DDIT3:-0.193225892881;ELF1,2,4:-0.207168648355;DBP:-0.2094187125;ARID5B:-0.212040912484;HAND1,2:-0.216074272062;MTF1:-0.220053390734;SMAD1..7,9:-0.228582451392;TGIF1:-0.229141865717;NFE2L2:-0.23532756797;FOXP3:-0.243956195723;RFX1:-0.248632812256;TFAP2B:-0.256249253393;MAFB:-0.295142486274;RREB1:-0.308563683743;NFE2:-0.314479628192;MTE{core}:-0.32550035303;FOSL2:-0.326789092701;NKX3-2:-0.331479303753;RUNX1..3:-0.332508104286;SOX{8,9,10}:-0.344873880526;PPARG:-0.346988378528;RFX2..5_RFXANK_RFXAP:-0.34909251048;TEF:-0.370588294756;CUX2:-0.385070245047;REST:-0.401460691946;MED-1{core}:-0.40790443202;JUN:-0.416235178135;CRX:-0.416504900935;NFKB1_REL_RELA:-0.422014042643;PAX6:-0.450274096638;ADNP_IRX_SIX_ZHX:-0.458671391409;IKZF2:-0.459645598762;SPI1:-0.476412679945;BPTF:-0.494746664269;DMAP1_NCOR{1,2}_SMARC:-0.519659124293;POU5F1:-0.544405287798;HMX1:-0.563152986661;SPIB:-0.598838303918;OCT4_SOX2{dimer}:-0.60550059819;ATF4:-0.610296407593;ATF5_CREB3:-0.620040340472;PAX2:-0.624019340283;VSX1,2:-0.629473826589;ETS1,2:-0.636922170737;TLX2:-0.653256649792;IRF7:-0.672752889195;IRF1,2:-0.673504093411;NANOG:-0.67468470288;SNAI1..3:-0.676654027067;EP300:-0.680035585435;NFIL3:-0.707495350265;ATF2:-0.740089494288;SOX2:-0.745362996001;FOXO1,3,4:-0.7501982402;GATA6:-0.764516308409;RORA:-0.774573218058;FOX{I1,J2}:-0.866523749424;FOXA2:-0.870588492146;FOX{F1,F2,J1}:-0.876467184876;LMO2:-0.880719086535;SREBF1,2:-0.907837186258;HMGA1,2:-0.933794502241;FOX{D1,D2}:-0.961945603093;HBP1_HMGB_SSRP1_UBTF:-0.9877093808;HOX{A6,A7,B6,B7}:-1.03629139394;FOXN1:-1.0494616731;ZEB1:-1.05755967633;FOXQ1:-1.14118919103 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11455-119A6;search_select_hide=table117:FF:11455-119A6 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Skeletal Muscle Cells, donor5 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12056 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12056
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12056
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.732 |
| 10 | 10 | 0.147 |
| 100 | 100 | 0.446 |
| 101 | 101 | 0.365 |
| 102 | 102 | 0.492 |
| 103 | 103 | 0.512 |
| 104 | 104 | 0.808 |
| 105 | 105 | 0.312 |
| 106 | 106 | 0.00122 |
| 107 | 107 | 0.815 |
| 108 | 108 | 0.833 |
| 109 | 109 | 0.686 |
| 11 | 11 | 0.4 |
| 110 | 110 | 0.00462 |
| 111 | 111 | 0.848 |
| 112 | 112 | 0.118 |
| 113 | 113 | 0.38 |
| 114 | 114 | 0.132 |
| 115 | 115 | 0.682 |
| 116 | 116 | 0.143 |
| 117 | 117 | 0.373 |
| 118 | 118 | 0.952 |
| 119 | 119 | 0.325 |
| 12 | 12 | 0.417 |
| 120 | 120 | 0.0981 |
| 121 | 121 | 0.807 |
| 122 | 122 | 6.72538e-4 |
| 123 | 123 | 0.101 |
| 124 | 124 | 0.23 |
| 125 | 125 | 0.653 |
| 126 | 126 | 0.67 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.4 |
| 129 | 129 | 0.183 |
| 13 | 13 | 0.185 |
| 130 | 130 | 0.299 |
| 131 | 131 | 0.872 |
| 132 | 132 | 0.49 |
| 133 | 133 | 0.807 |
| 134 | 134 | 0.441 |
| 135 | 135 | 0.159 |
| 136 | 136 | 0.114 |
| 137 | 137 | 0.0309 |
| 138 | 138 | 0.0295 |
| 139 | 139 | 0.0821 |
| 14 | 14 | 0.241 |
| 140 | 140 | 0.436 |
| 141 | 141 | 0.908 |
| 142 | 142 | 0.964 |
| 143 | 143 | 0.112 |
| 144 | 144 | 0.717 |
| 145 | 145 | 0.939 |
| 146 | 146 | 0.771 |
| 147 | 147 | 0.509 |
| 148 | 148 | 0.322 |
| 149 | 149 | 0.762 |
| 15 | 15 | 0.245 |
| 150 | 150 | 0.974 |
| 151 | 151 | 0.677 |
| 152 | 152 | 0.388 |
| 153 | 153 | 0.476 |
| 154 | 154 | 0.604 |
| 155 | 155 | 0.0483 |
| 156 | 156 | 0.163 |
| 157 | 157 | 0.324 |
| 158 | 158 | 0.0102 |
| 159 | 159 | 0.145 |
| 16 | 16 | 0.511 |
| 160 | 160 | 0.301 |
| 161 | 161 | 0.896 |
| 162 | 162 | 0.0913 |
| 163 | 163 | 0.347 |
| 164 | 164 | 0.291 |
| 165 | 165 | 0.288 |
| 166 | 166 | 0.227 |
| 167 | 167 | 0.191 |
| 168 | 168 | 0.217 |
| 169 | 169 | 0.456 |
| 17 | 17 | 0.735 |
| 18 | 18 | 0.554 |
| 19 | 19 | 0.21 |
| 2 | 2 | 0.823 |
| 20 | 20 | 0.963 |
| 21 | 21 | 0.0519 |
| 22 | 22 | 0.793 |
| 23 | 23 | 0.0312 |
| 24 | 24 | 0.32 |
| 25 | 25 | 0.632 |
| 26 | 26 | 0.116 |
| 27 | 27 | 0.563 |
| 28 | 28 | 0.102 |
| 29 | 29 | 0.225 |
| 3 | 3 | 0.924 |
| 30 | 30 | 0.949 |
| 31 | 31 | 0.505 |
| 32 | 32 | 0.00184 |
| 33 | 33 | 0.366 |
| 34 | 34 | 0.967 |
| 35 | 35 | 0.218 |
| 36 | 36 | 0.214 |
| 37 | 37 | 0.741 |
| 38 | 38 | 0.571 |
| 39 | 39 | 0.501 |
| 4 | 4 | 0.0612 |
| 40 | 40 | 0.193 |
| 41 | 41 | 0.00448 |
| 42 | 42 | 0.532 |
| 43 | 43 | 0.488 |
| 44 | 44 | 0.13 |
| 45 | 45 | 0.108 |
| 46 | 46 | 0.738 |
| 47 | 47 | 0.894 |
| 48 | 48 | 0.599 |
| 49 | 49 | 0.177 |
| 5 | 5 | 0.296 |
| 50 | 50 | 0.386 |
| 51 | 51 | 0.588 |
| 52 | 52 | 0.294 |
| 53 | 53 | 0.331 |
| 54 | 54 | 0.538 |
| 55 | 55 | 0.946 |
| 56 | 56 | 0.941 |
| 57 | 57 | 0.954 |
| 58 | 58 | 0.128 |
| 59 | 59 | 0.967 |
| 6 | 6 | 0.571 |
| 60 | 60 | 0.0856 |
| 61 | 61 | 0.414 |
| 62 | 62 | 0.135 |
| 63 | 63 | 0.815 |
| 64 | 64 | 0.95 |
| 65 | 65 | 0.54 |
| 66 | 66 | 0.572 |
| 67 | 67 | 0.494 |
| 68 | 68 | 0.203 |
| 69 | 69 | 0.576 |
| 7 | 7 | 0.538 |
| 70 | 70 | 0.024 |
| 71 | 71 | 0.489 |
| 72 | 72 | 0.196 |
| 73 | 73 | 0.622 |
| 74 | 74 | 0.744 |
| 75 | 75 | 0.446 |
| 76 | 76 | 0.935 |
| 77 | 77 | 0.982 |
| 78 | 78 | 0.683 |
| 79 | 79 | 0.0287 |
| 8 | 8 | 0.225 |
| 80 | 80 | 0.0341 |
| 81 | 81 | 0.49 |
| 82 | 82 | 0.07 |
| 83 | 83 | 0.889 |
| 84 | 84 | 0.885 |
| 85 | 85 | 0.00575 |
| 86 | 86 | 0.584 |
| 87 | 87 | 0.0979 |
| 88 | 88 | 0.573 |
| 89 | 89 | 0.679 |
| 9 | 9 | 0.864 |
| 90 | 90 | 0.425 |
| 91 | 91 | 0.442 |
| 92 | 92 | 0.687 |
| 93 | 93 | 0.731 |
| 94 | 94 | 0.718 |
| 95 | 95 | 0.224 |
| 96 | 96 | 0.338 |
| 97 | 97 | 0.885 |
| 98 | 98 | 0.422 |
| 99 | 99 | 8.93668e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12056
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
