FF:11458-119A9: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Fibroblast - Dermal, donor6
Species:	Human (Homo sapiens)
Library ID:	CNhs12059
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4828
catalog number	SC2305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005619

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12059		CAGE		DRX008259		DRR009131

Accession ID Hg19

Library id		BAM		CTSS
CNhs12059		DRZ000556		DRZ001941

Accession ID Hg38

Library id		BAM		CTSS
CNhs12059		DRZ011906		DRZ013291

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.121
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.596
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0473
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.319
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.393
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.216
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.204
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.612
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00617
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.597
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0571
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0571
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0747
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.429
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.122
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.355
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12059

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0539
MA0003.1	MA0003.1	0.236
MA0004.1	MA0004.1	0.728
MA0006.1	MA0006.1	0.539
MA0007.1	MA0007.1	0.724
MA0009.1	MA0009.1	0.286
MA0014.1	MA0014.1	0.724
MA0017.1	MA0017.1	0.0681
MA0018.2	MA0018.2	0.146
MA0019.1	MA0019.1	0.559
MA0024.1	MA0024.1	2.98111e-11
MA0025.1	MA0025.1	0.0764
MA0027.1	MA0027.1	0.537
MA0028.1	MA0028.1	0.00517
MA0029.1	MA0029.1	0.733
MA0030.1	MA0030.1	0.00859
MA0031.1	MA0031.1	0.0267
MA0035.2	MA0035.2	0.012
MA0038.1	MA0038.1	0.00294
MA0039.2	MA0039.2	0.776
MA0040.1	MA0040.1	0.141
MA0041.1	MA0041.1	0.174
MA0042.1	MA0042.1	0.333
MA0043.1	MA0043.1	0.0159
MA0046.1	MA0046.1	0.592
MA0047.2	MA0047.2	0.411
MA0048.1	MA0048.1	2.89754e-4
MA0050.1	MA0050.1	4.7093e-7
MA0051.1	MA0051.1	4.95436e-6
MA0052.1	MA0052.1	0.976
MA0055.1	MA0055.1	3.40222e-5
MA0057.1	MA0057.1	0.73
MA0058.1	MA0058.1	0.765
MA0059.1	MA0059.1	0.301
MA0060.1	MA0060.1	2.96454e-12
MA0061.1	MA0061.1	0.00352
MA0062.2	MA0062.2	0.152
MA0065.2	MA0065.2	0.0498
MA0066.1	MA0066.1	0.625
MA0067.1	MA0067.1	0.168
MA0068.1	MA0068.1	0.537
MA0069.1	MA0069.1	0.425
MA0070.1	MA0070.1	0.381
MA0071.1	MA0071.1	0.785
MA0072.1	MA0072.1	0.931
MA0073.1	MA0073.1	0.508
MA0074.1	MA0074.1	0.394
MA0076.1	MA0076.1	0.00575
MA0077.1	MA0077.1	0.6
MA0078.1	MA0078.1	0.651
MA0079.2	MA0079.2	0.15
MA0080.2	MA0080.2	2.92671e-12
MA0081.1	MA0081.1	0.209
MA0083.1	MA0083.1	0.746
MA0084.1	MA0084.1	0.0995
MA0087.1	MA0087.1	0.407
MA0088.1	MA0088.1	2.75715e-4
MA0090.1	MA0090.1	0.6
MA0091.1	MA0091.1	0.378
MA0092.1	MA0092.1	0.478
MA0093.1	MA0093.1	0.691
MA0099.2	MA0099.2	0.528
MA0100.1	MA0100.1	0.0779
MA0101.1	MA0101.1	0.0922
MA0102.2	MA0102.2	1.35654e-4
MA0103.1	MA0103.1	3.53368e-5
MA0104.2	MA0104.2	0.0356
MA0105.1	MA0105.1	0.08
MA0106.1	MA0106.1	0.359
MA0107.1	MA0107.1	0.00384
MA0108.2	MA0108.2	0.0579
MA0111.1	MA0111.1	0.992
MA0112.2	MA0112.2	0.00972
MA0113.1	MA0113.1	0.919
MA0114.1	MA0114.1	0.243
MA0115.1	MA0115.1	0.933
MA0116.1	MA0116.1	0.267
MA0117.1	MA0117.1	0.925
MA0119.1	MA0119.1	0.87
MA0122.1	MA0122.1	0.526
MA0124.1	MA0124.1	0.7
MA0125.1	MA0125.1	0.411
MA0131.1	MA0131.1	0.132
MA0135.1	MA0135.1	0.999
MA0136.1	MA0136.1	7.19189e-7
MA0137.2	MA0137.2	0.0979
MA0138.2	MA0138.2	0.818
MA0139.1	MA0139.1	0.317
MA0140.1	MA0140.1	0.201
MA0141.1	MA0141.1	0.955
MA0142.1	MA0142.1	0.417
MA0143.1	MA0143.1	0.506
MA0144.1	MA0144.1	0.0576
MA0145.1	MA0145.1	0.0353
MA0146.1	MA0146.1	0.515
MA0147.1	MA0147.1	0.0628
MA0148.1	MA0148.1	0.252
MA0149.1	MA0149.1	0.848
MA0150.1	MA0150.1	0.221
MA0152.1	MA0152.1	0.0621
MA0153.1	MA0153.1	0.312
MA0154.1	MA0154.1	0.0164
MA0155.1	MA0155.1	0.0623
MA0156.1	MA0156.1	0.0161
MA0157.1	MA0157.1	0.0361
MA0159.1	MA0159.1	0.0352
MA0160.1	MA0160.1	0.199
MA0162.1	MA0162.1	0.387
MA0163.1	MA0163.1	0.602
MA0164.1	MA0164.1	0.471
MA0258.1	MA0258.1	0.0273
MA0259.1	MA0259.1	0.0686

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12059

Novel motif	Logo	P-value
1	1	0.706
10	10	0.204
100	100	0.601
101	101	0.381
102	102	0.346
103	103	0.0767
104	104	0.987
105	105	0.708
106	106	5.97005e-4
107	107	0.171
108	108	0.216
109	109	0.908
11	11	0.784
110	110	0.484
111	111	0.521
112	112	0.0534
113	113	0.0279
114	114	0.25
115	115	0.776
116	116	0.432
117	117	0.674
118	118	0.896
119	119	0.126
12	12	0.483
120	120	0.241
121	121	0.994
122	122	0.11
123	123	0.784
124	124	0.392
125	125	0.569
126	126	0.851
127	127	0.619
128	128	0.0171
129	129	0.144
13	13	0.684
130	130	0.0186
131	131	0.766
132	132	0.934
133	133	0.74
134	134	0.582
135	135	0.0106
136	136	0.5
137	137	0.179
138	138	0.251
139	139	9.22491e-6
14	14	0.179
140	140	0.839
141	141	0.701
142	142	0.536
143	143	0.335
144	144	0.683
145	145	0.397
146	146	0.717
147	147	0.539
148	148	0.338
149	149	0.208
15	15	0.283
150	150	0.982
151	151	0.418
152	152	0.0618
153	153	0.261
154	154	0.427
155	155	0.0826
156	156	0.684
157	157	0.183
158	158	0.0292
159	159	0.0295
16	16	0.626
160	160	0.523
161	161	0.458
162	162	0.815
163	163	0.904
164	164	0.76
165	165	0.255
166	166	0.87
167	167	0.576
168	168	0.445
169	169	0.104
17	17	0.399
18	18	0.817
19	19	0.515
2	2	0.559
20	20	0.21
21	21	0.0442
22	22	0.241
23	23	0.0351
24	24	0.439
25	25	0.988
26	26	0.327
27	27	0.471
28	28	0.554
29	29	0.983
3	3	0.691
30	30	0.383
31	31	0.489
32	32	0.605
33	33	0.426
34	34	0.263
35	35	0.453
36	36	0.874
37	37	0.448
38	38	0.41
39	39	0.933
4	4	0.138
40	40	0.539
41	41	0.135
42	42	0.979
43	43	0.222
44	44	0.766
45	45	0.0648
46	46	0.498
47	47	0.833
48	48	0.573
49	49	0.3
5	5	0.162
50	50	0.614
51	51	0.661
52	52	0.0932
53	53	0.547
54	54	0.499
55	55	0.708
56	56	0.753
57	57	0.54
58	58	0.126
59	59	0.226
6	6	0.748
60	60	0.0177
61	61	0.963
62	62	0.177
63	63	0.862
64	64	0.932
65	65	0.158
66	66	0.057
67	67	0.788
68	68	0.994
69	69	0.743
7	7	0.495
70	70	0.00218
71	71	0.96
72	72	0.179
73	73	0.468
74	74	0.143
75	75	0.597
76	76	0.703
77	77	0.544
78	78	0.834
79	79	0.597
8	8	0.965
80	80	0.0292
81	81	0.357
82	82	0.0126
83	83	0.385
84	84	0.778
85	85	0.00614
86	86	0.426
87	87	0.176
88	88	0.379
89	89	0.1
9	9	0.531
90	90	0.62
91	91	0.545
92	92	0.176
93	93	0.826
94	94	0.863
95	95	0.249
96	96	0.369
97	97	0.752
98	98	0.448
99	99	0.0789

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12059

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000062 human dermal fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008151
+|DRA_sample_Accession=CAGE@SAMD00005619
-|accession_numbers=CAGE;DRX008259;DRR009131;DRZ000556;DRZ001941
+|accession_numbers=CAGE;DRX008259;DRR009131;DRZ000556;DRZ001941;DRZ011906;DRZ013291
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.79!162.22!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.64!57.87!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.45!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.54!963.35!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.54!86.94!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.48!131.18!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.84!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.93!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.39!23.46!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.54!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.02!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.33!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.33!34.27!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.33!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.25!52.81!TWIST2;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.43!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.23!26.97!TWIST2;;chr2:102091566..102091581,-!p1@RFX8!1.19!14.47!RFX8;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.72!TBX18;;chr2:5832508..5832524,+!p1@SOX11!1.12!12.22!SOX11;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.42!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.81!HOXC8;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.83!ZIC1;;chr18:52969844..52969895,-!p27@TCF4!1.03!9.69!TCF4;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.55!HOXD8;;chr18:52969674..52969685,-!p24@TCF4!1.00!8.99!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.48!ETV4;;chr12:66218573..66218596,+!p7@HMGA2!0.99!13.34!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.29!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.94!35.53!TOX2;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.44!PAX3;;chr5:3595977..3595999,+!p1@IRX1!0.93!7.44!IRX1;;chr2:19558373..19558392,-!p1@OSR1!0.92!20.51!OSR1;;chr2:200322654..200322707,-!p2@SATB2!0.90!10.39!SATB2;;chr5:158526917..158526932,-!p1@EBF1!0.89!17.70!EBF1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.87!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.74!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.74!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr17:41623009..41623053,-!p4@ETV4!0.88!10.96!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.60!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.60!KDM5D;;chr12:66218469..66218477,+!p16@HMGA2!0.87!6.46!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.11!ETV1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.15!PPARG;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.59!TOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.32!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.32!GLIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.90!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.22!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.39!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.76!IRX2;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.16!FOXF1;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.86!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.32!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.90!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.48!EN1;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.76!SHOX2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.34!HOXB5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.34!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.34!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.30!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!0.79!6.74!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.06!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.78!5.06!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.92!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.92!ZIC1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.05!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.19!POU2F2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.12!BRCA1;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.44!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.63!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.75!4.63!HOXB8;;chr12:54422217..54422239,+!p3@HOXC6!0.75!4.63!HOXC6;;chr4:299227..299272,-!p1@ZNF732!0.75!4.63!ZNF732;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.74!22.61!TAL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.59!AHRR;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.74!4.49!HOXB6;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.19!MSX1;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.81!PPARG;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.35!HOXC10;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.22!ETV4;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.21!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!0.71!7.30!ZNF492;;chr5:3595961..3595975,+!p3@IRX1!0.71!4.07!IRX1;;chr12:96588143..96588185,+!p1@ELK3!0.70!55.90!ELK3;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.40!TCF19;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.79!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.83!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.70!7.30!CREB3L1;;chr3:141121847..141121868,+!p5@ZBTB38!0.69!6.32!ZBTB38;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.92!HOXC4;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.93!HAND2;;chr5:3595934..3595957,+!p2@IRX1!0.69!3.93!IRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.93!FOXL1;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.05!CREB3L1;;chr6:45390025..45390076,+!p2@RUNX2!0.68!10.11!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.78!TBX18;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.79!HOXA9;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.79!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.79!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.68!3.79!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.68!3.79!HOXC5;;chr8:49833978..49833996,-!p1@SNAI2!0.67!87.92!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.07!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr6:34204672..34204692,+!p1@HMGA1!0.65!464.61!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.06!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.28!SNAI2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.78!PRRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.65!3.51!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.64!3.37!ZFY;;chr2:119604456..119604501,-!p2@EN1!0.64!3.37!EN1;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.37!SHOX2;;chr17:59477233..59477263,+!p1@TBX2!0.63!11.66!TBX2;;chr7:42276787..42276815,-!p1@GLI3!0.63!9.97!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.23!HOXA9;;chr17:41622731..41622764,-!p5@ETV4!0.63!3.23!ETV4;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.23!RFX8;;chr2:102091478..102091490,-!p3@RFX8!0.63!3.23!RFX8;;chr20:32274179..32274213,-!p1@E2F1!0.61!24.02!E2F1;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.09!TBX18;;chr12:54447686..54447704,+!p5@HOXC4!0.61!3.09!HOXC4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.93!DPF1;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.37!HOXB2;;chr2:102091590..102091601,-!p5@RFX8!0.60!2.95!RFX8;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.61!MATR3;;chr16:86600426..86600441,+!p1@FOXC2!0.59!8.15!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.59!4.78!ENO1;;chr17:46655704..46655718,-!p2@HOXB4!0.59!4.63!HOXB4;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.79!TBX3;;chr14:55493763..55493824,-!p1@WDHD1!0.58!25.70!WDHD1;;chr6:45390077..45390105,+!p9@RUNX2!0.58!3.79!RUNX2;;chr3:12329320..12329338,+!p4@PPARG!0.58!3.09!PPARG;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.81!HOXC8;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.81!HOXB4;;chr5:158527139..158527161,-!p5@EBF1!0.58!2.81!EBF1;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.81!EBF2;;chr8:93074872..93074884,-!p10@RUNX1T1!0.58!2.81!RUNX1T1;;chr6:34204973..34204990,+!p4@HMGA1!0.57!45.08!HMGA1;;chr21:47063625..47063658,+!p1@PCBP3!0.57!14.19!PCBP3;;chr7:19157043..19157088,-!p2@TWIST1!0.57!8.01!TWIST1;;chr2:169312600..169312606,+!p2@CERS6!0.57!4.63!CERS6;;chr12:66218003..66218018,+!p9@HMGA2!0.57!3.51!HMGA2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.09!ZNF385D;;chr17:41623667..41623682,-!p8@ETV4!0.57!2.95!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.46!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.56!3.23!HOXB2;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.67!HOXB8;;chr3:21792631..21792665,-!p3@ZNF385D!0.56!2.67!ZNF385D;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.25!MYBL2;;chr9:4300050..4300118,-!p1@GLIS3!0.55!20.51!GLIS3;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.97!ENO1;;chr7:42276822..42276895,-!p2@GLI3!0.55!8.99!GLI3;;chr4:26322267..26322334,+!p3@RBPJ!0.55!7.16!RBPJ;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.32!SATB2;;chr2:175199675..175199688,+!p1@SP9!0.55!2.53!SP9;;chr3:147127177..147127194,+!p2@ZIC1!0.55!2.53!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.55!2.53!EBF1;;chr6:85473227..85473243,-!p5@TBX18!0.55!2.53!TBX18;;chr1:170633058..170633084,+!p5@PRRX1!0.55!2.53!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.54!17.98!MYBL2;;chr4:206390..206444,+!p1@ZNF876P!0.54!5.06!ZNF876P;;chr19:23299814..23299844,+!p1@ZNF730!0.54!3.23!ZNF730;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.26!AEBP1;;chr12:77459306..77459365,-!p1@E2F7!0.53!38.34!E2F7;;chr4:1873100..1873152,+!p1@WHSC1!0.53!23.31!WHSC1;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.93!ETV4;;chr4:109089095..109089144,-!p6@LEF1!0.53!2.39!LEF1;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.39!TBX15;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.39!PRRX1;;chr5:176738887..176738934,-!p1@MXD3!0.52!19.52!MXD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.52!7.58!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr2:185463247..185463263,+!p1@ZNF804A!0.52!4.63!ZNF804A;;chr8:128748308..128748324,+!p2@MYC!0.51!82.16!MYC;;chr12:2986275..2986363,-!p1@FOXM1!0.51!29.35!FOXM1;;chr1:247171347..247171366,-!p2@ZNF695!0.51!4.78!ZNF695;;chr15:57210759..57210775,+!p7@TCF12!0.51!3.65!TCF12;;chr3:147111198..147111225,+!p4@ZIC1!0.51!2.25!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.51!2.25!PITX2;;chr10:119302232..119302265,+!p1@EMX2!0.51!2.25!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.51!2.25!HOXC5;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11458-119A9
 |is_a=EFO:0002091;;FF:0000062
 |is_obsolete=
 |library_id=CNhs12059
-|library_ids=CNhs12059
+|library_id_phase_based=2:CNhs12059
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11458
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11458
 |name=Fibroblast - Dermal, donor6
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12059,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11458-119A9;search_select_hide=table117:FF:11458-119A9
 }}

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FF:11458-119A9: Difference between revisions

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Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0