FF:11459-119B1: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Skeletal Muscle Cells, donor6
Species:	Human (Homo sapiens)
Library ID:	CNhs12060
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	fetus
sex	unknown
age	fetal
cell type	skeletal muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4820
catalog number	SC3505
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005970

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12060		CAGE		DRX008457		DRR009329

Accession ID Hg19

Library id		BAM		CTSS
CNhs12060		DRZ000754		DRZ002139

Accession ID Hg38

Library id		BAM		CTSS
CNhs12060		DRZ012104		DRZ013489

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0708
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.513
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.0561
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.15
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0.0561
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.15
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0186
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.262
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.394
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.203
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.212
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.262
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.476
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00513
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0061
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.523
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0561
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.15
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.15
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.38
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.733
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.15
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.293
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.524
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12060

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0466
MA0003.1	MA0003.1	0.701
MA0004.1	MA0004.1	0.64
MA0006.1	MA0006.1	0.749
MA0007.1	MA0007.1	0.211
MA0009.1	MA0009.1	0.281
MA0014.1	MA0014.1	0.816
MA0017.1	MA0017.1	0.438
MA0018.2	MA0018.2	0.33
MA0019.1	MA0019.1	0.604
MA0024.1	MA0024.1	1.4083e-9
MA0025.1	MA0025.1	0.0208
MA0027.1	MA0027.1	0.362
MA0028.1	MA0028.1	2.10257e-4
MA0029.1	MA0029.1	0.349
MA0030.1	MA0030.1	0.00156
MA0031.1	MA0031.1	2.46809e-4
MA0035.2	MA0035.2	0.0412
MA0038.1	MA0038.1	0.0188
MA0039.2	MA0039.2	0.394
MA0040.1	MA0040.1	0.0956
MA0041.1	MA0041.1	0.188
MA0042.1	MA0042.1	0.186
MA0043.1	MA0043.1	0.0142
MA0046.1	MA0046.1	0.119
MA0047.2	MA0047.2	0.104
MA0048.1	MA0048.1	0.049
MA0050.1	MA0050.1	9.39505e-8
MA0051.1	MA0051.1	2.21444e-6
MA0052.1	MA0052.1	0.00117
MA0055.1	MA0055.1	0.00119
MA0057.1	MA0057.1	0.954
MA0058.1	MA0058.1	0.962
MA0059.1	MA0059.1	0.0236
MA0060.1	MA0060.1	1.92145e-5
MA0061.1	MA0061.1	0.135
MA0062.2	MA0062.2	0.664
MA0065.2	MA0065.2	0.329
MA0066.1	MA0066.1	0.595
MA0067.1	MA0067.1	0.109
MA0068.1	MA0068.1	0.222
MA0069.1	MA0069.1	0.371
MA0070.1	MA0070.1	0.433
MA0071.1	MA0071.1	0.423
MA0072.1	MA0072.1	0.474
MA0073.1	MA0073.1	0.492
MA0074.1	MA0074.1	0.89
MA0076.1	MA0076.1	0.0104
MA0077.1	MA0077.1	0.891
MA0078.1	MA0078.1	0.88
MA0079.2	MA0079.2	0.177
MA0080.2	MA0080.2	6.68197e-14
MA0081.1	MA0081.1	0.0162
MA0083.1	MA0083.1	7.01009e-5
MA0084.1	MA0084.1	0.0716
MA0087.1	MA0087.1	0.911
MA0088.1	MA0088.1	1.39222e-5
MA0090.1	MA0090.1	0.0026
MA0091.1	MA0091.1	0.0491
MA0092.1	MA0092.1	0.75
MA0093.1	MA0093.1	0.663
MA0099.2	MA0099.2	0.199
MA0100.1	MA0100.1	0.122
MA0101.1	MA0101.1	0.251
MA0102.2	MA0102.2	6.79728e-4
MA0103.1	MA0103.1	1.52867e-4
MA0104.2	MA0104.2	0.00456
MA0105.1	MA0105.1	0.583
MA0106.1	MA0106.1	0.254
MA0107.1	MA0107.1	0.0386
MA0108.2	MA0108.2	1.83446e-5
MA0111.1	MA0111.1	0.865
MA0112.2	MA0112.2	0.42
MA0113.1	MA0113.1	0.189
MA0114.1	MA0114.1	0.516
MA0115.1	MA0115.1	0.912
MA0116.1	MA0116.1	0.356
MA0117.1	MA0117.1	0.384
MA0119.1	MA0119.1	0.159
MA0122.1	MA0122.1	0.928
MA0124.1	MA0124.1	0.844
MA0125.1	MA0125.1	0.76
MA0131.1	MA0131.1	0.766
MA0135.1	MA0135.1	0.899
MA0136.1	MA0136.1	1.64005e-10
MA0137.2	MA0137.2	0.0367
MA0138.2	MA0138.2	0.761
MA0139.1	MA0139.1	0.1
MA0140.1	MA0140.1	0.251
MA0141.1	MA0141.1	0.103
MA0142.1	MA0142.1	0.0795
MA0143.1	MA0143.1	0.216
MA0144.1	MA0144.1	0.058
MA0145.1	MA0145.1	0.953
MA0146.1	MA0146.1	0.656
MA0147.1	MA0147.1	0.00307
MA0148.1	MA0148.1	0.039
MA0149.1	MA0149.1	0.651
MA0150.1	MA0150.1	0.0371
MA0152.1	MA0152.1	0.115
MA0153.1	MA0153.1	0.436
MA0154.1	MA0154.1	0.204
MA0155.1	MA0155.1	0.926
MA0156.1	MA0156.1	8.87055e-6
MA0157.1	MA0157.1	6.88793e-4
MA0159.1	MA0159.1	0.412
MA0160.1	MA0160.1	0.167
MA0162.1	MA0162.1	0.0642
MA0163.1	MA0163.1	0.0666
MA0164.1	MA0164.1	0.772
MA0258.1	MA0258.1	0.671
MA0259.1	MA0259.1	0.0294

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12060

Novel motif	Logo	P-value
1	1	0.528
10	10	0.0895
100	100	0.097
101	101	0.201
102	102	0.624
103	103	0.183
104	104	0.584
105	105	0.572
106	106	0.00982
107	107	0.345
108	108	0.935
109	109	0.457
11	11	0.419
110	110	0.0293
111	111	0.456
112	112	0.0254
113	113	0.42
114	114	0.425
115	115	0.956
116	116	0.139
117	117	0.262
118	118	0.987
119	119	0.941
12	12	0.671
120	120	0.102
121	121	0.599
122	122	0.00924
123	123	0.434
124	124	0.187
125	125	0.297
126	126	0.665
127	127	0.56
128	128	0.0733
129	129	0.444
13	13	0.0514
130	130	0.0931
131	131	0.613
132	132	0.9
133	133	0.79
134	134	0.474
135	135	0.0417
136	136	0.853
137	137	0.0905
138	138	0.089
139	139	0.00994
14	14	0.107
140	140	0.152
141	141	0.856
142	142	0.406
143	143	0.55
144	144	0.762
145	145	0.503
146	146	0.909
147	147	0.337
148	148	0.669
149	149	0.868
15	15	0.319
150	150	0.34
151	151	0.699
152	152	0.857
153	153	0.538
154	154	0.702
155	155	0.0143
156	156	0.368
157	157	0.185
158	158	0.0251
159	159	0.237
16	16	0.581
160	160	0.215
161	161	0.812
162	162	0.572
163	163	0.948
164	164	0.419
165	165	0.0325
166	166	0.55
167	167	0.841
168	168	0.941
169	169	0.744
17	17	0.94
18	18	0.875
19	19	0.235
2	2	0.903
20	20	0.823
21	21	0.0302
22	22	0.954
23	23	0.0771
24	24	0.699
25	25	0.541
26	26	0.0933
27	27	0.398
28	28	0.175
29	29	0.656
3	3	0.739
30	30	0.736
31	31	0.507
32	32	0.0132
33	33	0.278
34	34	0.589
35	35	0.261
36	36	0.774
37	37	0.506
38	38	0.741
39	39	0.3
4	4	0.0932
40	40	0.555
41	41	0.0185
42	42	0.974
43	43	0.515
44	44	0.356
45	45	0.0574
46	46	0.989
47	47	0.549
48	48	0.421
49	49	0.455
5	5	0.197
50	50	0.148
51	51	0.996
52	52	0.151
53	53	0.614
54	54	0.671
55	55	0.558
56	56	0.855
57	57	0.481
58	58	0.0544
59	59	0.785
6	6	0.672
60	60	0.0324
61	61	0.688
62	62	0.151
63	63	0.731
64	64	0.559
65	65	0.707
66	66	0.314
67	67	0.847
68	68	0.76
69	69	0.922
7	7	0.644
70	70	0.00336
71	71	0.379
72	72	0.0286
73	73	0.248
74	74	0.991
75	75	0.704
76	76	0.565
77	77	0.78
78	78	0.97
79	79	0.318
8	8	0.189
80	80	0.0444
81	81	0.309
82	82	0.0103
83	83	0.966
84	84	0.956
85	85	0.0497
86	86	0.306
87	87	0.15
88	88	0.718
89	89	0.383
9	9	0.926
90	90	0.176
91	91	0.452
92	92	0.491
93	93	0.75
94	94	0.647
95	95	0.0541
96	96	0.568
97	97	0.808
98	98	0.312
99	99	9.34638e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12060

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000162 human skeletal muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005970
-|accession_numbers=CAGE;DRX008457;DRR009329;DRZ000754;DRZ002139
+|accession_numbers=CAGE;DRX008457;DRR009329;DRZ000754;DRZ002139;DRZ012104;DRZ013489
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.03!105.58!MYOG;;chr12:66218255..66218304,+!p3@HMGA2!1.59!98.14!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.49!30.19!EBF2;;chr12:66218598..66218645,+!p2@HMGA2!1.47!127.09!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.41!66.85!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.32!28.53!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.36!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!518.95!HMGA1;;chr12:66218183..66218209,+!p4@HMGA2!1.25!32.25!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.23!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.33!ZFP106;;chr2:102091566..102091581,-!p1@RFX8!1.20!14.75!RFX8;;chr2:5832508..5832524,+!p1@SOX11!1.18!14.20!SOX11;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.38!SIX1;;chr7:15726296..15726315,-!p1@MEOX2!1.12!12.13!MEOX2;;chr15:57511609..57511651,+!p2@TCF12!1.11!19.99!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!1.10!11.72!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.10!11.58!HIF3A;;chr11:17741111..17741124,+!p1@MYOD1!1.09!11.16!MYOD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.09!11.16!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.97!8.27!HEYL;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.99!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.92!7.31!MYF5;;chrY:21906594..21906622,-!p1@KDM5D!0.90!7.03!KDM5D;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.34!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.89!6.75!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!0.88!18.19!HIC1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.62!HOXC8;;chr4:299227..299272,-!p1@ZNF732!0.87!6.48!ZNF732;;chr10:131762504..131762555,-!p1@EBF3!0.87!6.34!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.85!6.06!HMGA2;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.06!PRRX1;;chr2:239148671..239148686,-!p1@HES6!0.84!22.88!HES6;;chr2:102091478..102091490,-!p3@RFX8!0.84!5.93!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.75!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.75!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.75!BNC1;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.10!CERS6;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.61!TWIST1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.51!HOXD8;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.53!SNAI2;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.26!RUNX1;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.51!TBX2;;chr16:1031762..1031781,+!p1@SOX8!0.80!5.38!SOX8;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.19!EGR1;;chr11:65686732..65686756,+!p2@DRAP1!0.78!23.16!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.76!26.88!CREB3L1;;chr17:41623009..41623053,-!p4@ETV4!0.76!7.99!ETV4;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.47!BRCA1;;chr1:170632959..170632987,+!p4@PRRX1!0.75!5.10!PRRX1;;chr12:3068544..3068597,+!p1@TEAD4!0.74!30.19!TEAD4;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.55!HOXC9;;chr7:15725757..15725828,-!p5@MEOX2!0.74!4.55!MEOX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.90!SNAI2;;chr5:88178983..88179012,-!p1@MEF2C!0.73!37.49!MEF2C;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.79!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.02!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.72!DRAP1;;chr11:17741254..17741282,+!p2@MYOD1!0.71!4.14!MYOD1;;chr12:66358080..66358094,+!p15@HMGA2!0.70!4.00!HMGA2;;chr3:147127142..147127168,+!p1@ZIC1!0.70!4.00!ZIC1;;chr5:321810..321877,+!p1@AHRR!0.69!13.92!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr6:45390077..45390105,+!p9@RUNX2!0.69!5.24!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.68!6.06!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.68!5.38!RUNX1;;chr12:66218152..66218174,+!p10@HMGA2!0.67!4.00!HMGA2;;chr1:119530493..119530572,-!p1@TBX15!0.67!3.72!TBX15;;chr8:77593750..77593757,+!p3@ZFHX4!0.66!3.58!ZFHX4;;chr6:34204672..34204692,+!p1@HMGA1!0.65!465.06!HMGA1;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.48!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.65!ZBTB38;;chr6:45296048..45296082,+!p1@RUNX2!0.65!4.14!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.65!3.72!GLIS1;;chr2:102091514..102091528,-!p6@RFX8!0.65!3.45!RFX8;;chr2:102091590..102091601,-!p5@RFX8!0.65!3.45!RFX8;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.45!FOXL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.65!3.45!HOXC5;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.22!MATR3;;chr6:45390025..45390076,+!p2@RUNX2!0.64!9.10!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.20!CREB3L1;;chr16:54320646..54320672,-!p2@IRX3!0.64!5.51!IRX3;;chr11:65668011..65668020,-!p3@FOSL1!0.63!3.31!FOSL1;;chr12:54394309..54394336,+!p2@HOXC9!0.63!3.31!HOXC9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.63!3.31!PEG3;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.31!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.31!HOXA9;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.56!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.33!FOXM1;;chr12:54378923..54378966,+!p1@HOXC10!0.62!3.17!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.62!3.17!EN1;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.17!BNC2;;chr11:65667846..65667868,-!p1@FOSL1!0.61!99.24!FOSL1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.16!HIC1;;chr9:16870710..16870763,-!p1@BNC2!0.61!5.93!BNC2;;chr17:46622229..46622257,-!p6@HOXB2!0.61!3.72!HOXB2;;chr14:61116168..61116180,-!p2@SIX1!0.61!3.58!SIX1;;chr3:141087393..141087426,+!p3@ZBTB38!0.60!13.78!ZBTB38;;chr6:155635583..155635644,-!p1@TFB1M!0.59!45.07!TFB1M;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.58!TAL1;;chr3:12329358..12329393,+!p3@PPARG!0.59!8.13!PPARG;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.31!GLI2;;chr17:59477197..59477212,+!p2@TBX2!0.59!5.51!TBX2;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.89!RFX8;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.89!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.59!2.89!HOXA9;;chr9:16870659..16870675,-!p2@BNC2!0.58!3.58!BNC2;;chr8:128748308..128748324,+!p2@MYC!0.57!94.42!MYC;;chr20:32274179..32274213,-!p1@E2F1!0.57!22.05!E2F1;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.92!ETV4;;chr3:12329397..12329433,+!p2@PPARG!0.57!7.03!PPARG;;chr17:46682321..46682362,-!p1@HOXB6!0.57!2.76!HOXB6;;chr17:59477403..59477414,+!p4@TBX2!0.57!2.76!TBX2;;chr12:115122318..115122331,-!p2@TBX3!0.57!2.76!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.56!14.47!FOXD1;;chr17:46622205..46622218,-!p3@HOXB2!0.56!3.17!HOXB2;;chr12:54380036..54380091,+!p4@HOXC10!0.56!2.62!HOXC10;;chr12:66218904..66218913,+!p11@HMGA2!0.56!2.62!HMGA2;;chr11:6947720..6947812,+!p1@ZNF215!0.55!3.58!ZNF215;;chr16:54320617..54320643,-!p3@IRX3!0.55!3.45!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.31!TBX18;;chr16:54320675..54320715,-!p1@IRX3!0.54!6.20!IRX3;;chr20:50721803..50721857,-!p2@ZFP64!0.54!4.27!ZFP64;;chr19:58740449..58740456,+!p3@ZNF544!0.54!2.48!ZNF544;;chr12:54380404..54380433,+!p3@HOXC10!0.54!2.48!HOXC10;;chr8:93074848..93074871,-!p3@RUNX1T1!0.54!2.48!RUNX1T1;;chr14:55493763..55493824,-!p1@WDHD1!0.53!22.61!WDHD1;;chr1:8934931..8934947,-!p4@ENO1!0.53!9.51!ENO1;;chr19:42636586..42636607,-!p1@POU2F2!0.53!7.86!POU2F2;;chr21:47063625..47063658,+!p1@PCBP3!0.52!12.68!PCBP3;;chr9:16871214..16871260,-!p11@BNC2!0.52!2.34!BNC2;;chr1:170632439..170632465,+!p11@PRRX1!0.52!2.34!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.52!2.34!PRRX1;;chr19:23433144..23433204,-!p1@ZNF724P!0.51!12.68!ZNF724P;;chr12:3068501..3068515,+!p4@TEAD4!0.51!4.41!TEAD4;;chr19:22817119..22817145,+!p1@ZNF492!0.51!4.27!ZNF492;;chr8:128747661..128747703,+!p6@MYC!0.51!3.31!MYC;;chr19:45260775..45260838,+!p5@BCL3!0.51!3.17!BCL3;;chr12:54447599..54447630,+!p3@HOXC4!0.51!2.89!HOXC4;;chr12:54394059..54394088,+!p3@HOXC9!0.51!2.21!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.51!2.21!HOXC5;;chr2:45236540..45236577,-!p1@SIX2!0.51!2.21!SIX2;;chr2:5832493..5832507,+!p2@SOX11!0.51!2.21!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.51!2.21!ZFY;;chr7:44143925..44143970,+!p1@AEBP1!0.50!64.78!AEBP1;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.54!MYBL2;;chr12:115122005..115122016,-!p3@TBX3!0.50!2.76!TBX3;;chr17:46675420..46675465,-!p3@HOXB6!0.50!2.62!HOXB6;;chr12:96588143..96588185,+!p1@ELK3!0.49!34.18!ELK3;;chr10:114710244..114710257,+!p3@TCF7L2!0.49!7.03!TCF7L2;;chr19:20188776..20188826,+!p1@ZNF90!0.49!6.89!ZNF90;;chr1:244214577..244214593,+!p1@ZNF238!0.49!2.07!ZNF238;;chr5:158527104..158527135,-!p4@EBF1!0.49!2.07!EBF1;;chr11:46299443..46299459,+!p4@CREB3L1!0.49!2.07!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.49!2.07!HOXC8;;chr12:54447637..54447659,+!p4@HOXC4!0.49!2.07!HOXC4;;chr4:4291861..4291913,-!p1@LYAR!0.48!62.72!LYAR;;chr14:62162258..62162269,+!p2@HIF1A!0.48!25.91!HIF1A;;chr17:46622440..46622477,-!p5@HOXB2!0.48!2.34!HOXB2;;chr20:42543441..42543497,+!p1@TOX2!0.47!11.44!TOX2;;chr3:114343768..114343822,-!p1@ZBTB20!0.47!11.03!ZBTB20;;chr6:45390002..45390023,+!p6@RUNX2!0.47!4.00!RUNX2;;chr1:8926369..8926385,-!p12@ENO1!0.47!2.89!ENO1;;chr1:170632115..170632136,+!p9@PRRX1!0.47!1.93!PRRX1;;chr21:36421401..36421414,-!p16@RUNX1!0.47!1.93!RUNX1;;chr18:3447536..3447542,+!p23@TGIF1!0.47!1.93!TGIF1;;chr11:17741084..17741094,+!p3@MYOD1!0.47!1.93!MYOD1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.47!1.93!RUNX1T1;;chr2:119605214..119605230,-!p1@EN1!0.47!1.93!EN1;;chr9:4300050..4300118,-!p1@GLIS3!0.46!16.54!GLIS3;;chr17:41622925..41622976,-!p3@ETV4!0.46!3.17!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.46!2.76!TBX2;;chr11:65687222..65687240,+!p7@DRAP1!0.46!2.62!DRAP1;;chr3:21792585..21792625,-!p2@ZNF385D!0.46!2.21!ZNF385D;;chr5:137804130..137804156,+!p5@EGR1!0.46!2.07!EGR1;;chr17:46622070..46622109,-!p1@HOXB2!0.45!5.10!HOXB2;;chr4:206390..206444,+!p1@ZNF876P!0.45!3.86!ZNF876P;;chr17:46622114..46622138,-!p4@HOXB2!0.45!3.17!HOXB2;;chr11:120107344..120107351,+!p1@POU2F3!0.45!2.34!POU2F3;;chr12:3068634..3068656,+!p5@TEAD4!0.45!1.79!TEAD4;;chr12:54422217..54422239,+!p3@HOXC6!0.45!1.79!HOXC6;;chr12:66218923..66218934,+!p14@HMGA2!0.45!1.79!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.45!1.79!FOXC2;;chr17:41622982..41623001,-!p11@ETV4!0.45!1.79!ETV4;;chr19:2867325..2867348,+!p1@ZNF556!0.45!1.79!ZNF556;;chr2:24714729..24714761,+!p1@NCOA1!0.45!1.79!NCOA1;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=CL:0000355,CL:0000222
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11459-119B1
 |is_a=EFO:0002091;;FF:0000162
 |is_obsolete=
 |library_id=CNhs12060
-|library_id_phase_based=1:CNhs12060
+|library_id_phase_based=2:CNhs12060
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11459
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11459
 |name=Skeletal Muscle Cells, donor6
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12060,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11459-119B1;search_select_hide=table117:FF:11459-119B1
 }}

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FF:11459-119B1: Difference between revisions

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Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0