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(Created page with "{{f5samples |id=FF:11459-119B1 |name=Skeletal Muscle Cells, donor6 |sample_id=11459 |rna_tube_id=119B1 |rna_box=119 |rna_position=B1 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11459-119B1
|DRA_sample_Accession=CAGE@SAMD00005970
|name=Skeletal Muscle Cells, donor6
|accession_numbers=CAGE;DRX008457;DRR009329;DRZ000754;DRZ002139;DRZ012104;DRZ013489
|sample_id=11459
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|rna_tube_id=119B1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
|rna_box=119
|rna_position=B1
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=4820.00000
|rna_catalog_number=SC3505
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=skeletal muscle
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=skeletal muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.78000
|sample_note=
|profile_hcage=CNhs12060,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000188,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.03!105.58!MYOG;;chr12:66218255..66218304,+!p3@HMGA2!1.59!98.14!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.49!30.19!EBF2;;chr12:66218598..66218645,+!p2@HMGA2!1.47!127.09!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.41!66.85!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.32!28.53!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.36!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!518.95!HMGA1;;chr12:66218183..66218209,+!p4@HMGA2!1.25!32.25!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.23!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.33!ZFP106;;chr2:102091566..102091581,-!p1@RFX8!1.20!14.75!RFX8;;chr2:5832508..5832524,+!p1@SOX11!1.18!14.20!SOX11;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.38!SIX1;;chr7:15726296..15726315,-!p1@MEOX2!1.12!12.13!MEOX2;;chr15:57511609..57511651,+!p2@TCF12!1.11!19.99!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!1.10!11.72!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.10!11.58!HIF3A;;chr11:17741111..17741124,+!p1@MYOD1!1.09!11.16!MYOD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.09!11.16!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.97!8.27!HEYL;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.99!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.92!7.31!MYF5;;chrY:21906594..21906622,-!p1@KDM5D!0.90!7.03!KDM5D;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.34!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.89!6.75!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!0.88!18.19!HIC1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.62!HOXC8;;chr4:299227..299272,-!p1@ZNF732!0.87!6.48!ZNF732;;chr10:131762504..131762555,-!p1@EBF3!0.87!6.34!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.85!6.06!HMGA2;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.06!PRRX1;;chr2:239148671..239148686,-!p1@HES6!0.84!22.88!HES6;;chr2:102091478..102091490,-!p3@RFX8!0.84!5.93!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.75!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.75!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.75!BNC1;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.10!CERS6;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.61!TWIST1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.51!HOXD8;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.53!SNAI2;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.26!RUNX1;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.51!TBX2;;chr16:1031762..1031781,+!p1@SOX8!0.80!5.38!SOX8;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.19!EGR1;;chr11:65686732..65686756,+!p2@DRAP1!0.78!23.16!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.76!26.88!CREB3L1;;chr17:41623009..41623053,-!p4@ETV4!0.76!7.99!ETV4;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.47!BRCA1;;chr1:170632959..170632987,+!p4@PRRX1!0.75!5.10!PRRX1;;chr12:3068544..3068597,+!p1@TEAD4!0.74!30.19!TEAD4;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.55!HOXC9;;chr7:15725757..15725828,-!p5@MEOX2!0.74!4.55!MEOX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.90!SNAI2;;chr5:88178983..88179012,-!p1@MEF2C!0.73!37.49!MEF2C;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.79!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.02!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.72!DRAP1;;chr11:17741254..17741282,+!p2@MYOD1!0.71!4.14!MYOD1;;chr12:66358080..66358094,+!p15@HMGA2!0.70!4.00!HMGA2;;chr3:147127142..147127168,+!p1@ZIC1!0.70!4.00!ZIC1;;chr5:321810..321877,+!p1@AHRR!0.69!13.92!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr6:45390077..45390105,+!p9@RUNX2!0.69!5.24!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.68!6.06!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.68!5.38!RUNX1;;chr12:66218152..66218174,+!p10@HMGA2!0.67!4.00!HMGA2;;chr1:119530493..119530572,-!p1@TBX15!0.67!3.72!TBX15;;chr8:77593750..77593757,+!p3@ZFHX4!0.66!3.58!ZFHX4;;chr6:34204672..34204692,+!p1@HMGA1!0.65!465.06!HMGA1;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.48!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.65!ZBTB38;;chr6:45296048..45296082,+!p1@RUNX2!0.65!4.14!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.65!3.72!GLIS1;;chr2:102091514..102091528,-!p6@RFX8!0.65!3.45!RFX8;;chr2:102091590..102091601,-!p5@RFX8!0.65!3.45!RFX8;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.45!FOXL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.65!3.45!HOXC5;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.22!MATR3;;chr6:45390025..45390076,+!p2@RUNX2!0.64!9.10!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.20!CREB3L1;;chr16:54320646..54320672,-!p2@IRX3!0.64!5.51!IRX3;;chr11:65668011..65668020,-!p3@FOSL1!0.63!3.31!FOSL1;;chr12:54394309..54394336,+!p2@HOXC9!0.63!3.31!HOXC9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.63!3.31!PEG3;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.31!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.31!HOXA9;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.56!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.33!FOXM1;;chr12:54378923..54378966,+!p1@HOXC10!0.62!3.17!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.62!3.17!EN1;;chr9:16705069..16705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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor6.CNhs12060.11459-119B1.hg38.nobarcode.ctss.bed.gz
|id=FF:11459-119B1
|is_a=EFO:0002091;;FF:0000162
|is_obsolete=
|library_id=CNhs12060
|library_id_phase_based=2:CNhs12060
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11459
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11459
|name=Skeletal Muscle Cells, donor6
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12060,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_catalog_number=SC3505
|rna_concentration=0.78
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=4820
|rna_od260/230=
|rna_od260/280=
|rna_position=B1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119B1
|rna_weight_ug=10
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=skeletal muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.44346417143176e-280!GO:0043226;organelle;1.97416649650101e-231!GO:0043229;intracellular organelle;5.22886444980157e-231!GO:0043231;intracellular membrane-bound organelle;1.05375385511109e-214!GO:0043227;membrane-bound organelle;2.72793065016237e-214!GO:0005737;cytoplasm;2.26433027824147e-205!GO:0044422;organelle part;3.63973398945715e-178!GO:0044446;intracellular organelle part;9.79784704423852e-177!GO:0044444;cytoplasmic part;1.123692579126e-146!GO:0032991;macromolecular complex;6.53916478648961e-130!GO:0030529;ribonucleoprotein complex;9.51978172707707e-105!GO:0044237;cellular metabolic process;4.83016291864653e-96!GO:0044238;primary metabolic process;2.85157363405811e-95!GO:0005634;nucleus;3.15548592528243e-95!GO:0044428;nuclear part;3.82831121103435e-88!GO:0043233;organelle lumen;4.0392151531006e-88!GO:0031974;membrane-enclosed lumen;4.0392151531006e-88!GO:0043170;macromolecule metabolic process;4.43851881770723e-88!GO:0005515;protein binding;2.71884353608959e-86!GO:0003723;RNA binding;1.18537712282808e-80!GO:0005739;mitochondrion;6.01580512501295e-79!GO:0043234;protein complex;1.58748662722544e-67!GO:0005840;ribosome;1.39808736405373e-63!GO:0006396;RNA processing;5.11431702932758e-59!GO:0016043;cellular component organization and biogenesis;2.11223100374862e-58!GO:0006412;translation;7.35451468179071e-58!GO:0043228;non-membrane-bound organelle;3.48107878350728e-56!GO:0043232;intracellular non-membrane-bound organelle;3.48107878350728e-56!GO:0003735;structural constituent of ribosome;8.91859939151e-56!GO:0044429;mitochondrial part;9.63799793571319e-54!GO:0031981;nuclear lumen;2.30134195057832e-51!GO:0043283;biopolymer metabolic process;1.21909431956771e-50!GO:0031090;organelle membrane;1.34161457914826e-49!GO:0019538;protein metabolic process;3.17676085671264e-49!GO:0031967;organelle envelope;3.94147365084547e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.06653273439236e-49!GO:0031975;envelope;7.76726762317383e-49!GO:0033279;ribosomal subunit;3.00722414683884e-48!GO:0010467;gene expression;2.3752362764745e-47!GO:0009058;biosynthetic process;3.7030786905679e-46!GO:0044249;cellular biosynthetic process;3.78421560479723e-45!GO:0006996;organelle organization and biogenesis;2.02096462924634e-44!GO:0044260;cellular macromolecule metabolic process;4.21166399266851e-43!GO:0044267;cellular protein metabolic process;6.34818126879068e-43!GO:0016071;mRNA metabolic process;8.13934680299173e-43!GO:0009059;macromolecule biosynthetic process;1.22411495680582e-42!GO:0005829;cytosol;2.0102493167381e-41!GO:0033036;macromolecule localization;4.16620284058375e-41!GO:0015031;protein transport;2.67319576045294e-40!GO:0008380;RNA splicing;3.46642758812459e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.30808625353395e-39!GO:0006259;DNA metabolic process;4.34012921314027e-38!GO:0046907;intracellular transport;6.82594691257703e-38!GO:0008104;protein localization;1.68523851205307e-37!GO:0006397;mRNA processing;3.15517073411014e-37!GO:0045184;establishment of protein localization;4.95022650699983e-37!GO:0065003;macromolecular complex assembly;1.89954979439552e-35!GO:0022607;cellular component assembly;7.20574534881405e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.20574534881405e-34!GO:0005740;mitochondrial envelope;9.4184342380069e-34!GO:0007049;cell cycle;9.42646650951634e-34!GO:0031966;mitochondrial membrane;1.33455876955974e-31!GO:0019866;organelle inner membrane;4.47005992811868e-31!GO:0005654;nucleoplasm;3.23252216175627e-30!GO:0006886;intracellular protein transport;5.34450978386369e-30!GO:0003676;nucleic acid binding;1.46792251026346e-29!GO:0005743;mitochondrial inner membrane;3.57993327000424e-29!GO:0005681;spliceosome;1.24599614815268e-28!GO:0000278;mitotic cell cycle;1.62714410117461e-27!GO:0000166;nucleotide binding;2.0753488142346e-27!GO:0022402;cell cycle process;5.59610814046629e-27!GO:0044445;cytosolic part;8.80238223191372e-27!GO:0015934;large ribosomal subunit;8.72762537622913e-25!GO:0006974;response to DNA damage stimulus;8.87771288552246e-25!GO:0015935;small ribosomal subunit;1.37604415388068e-24!GO:0044451;nucleoplasm part;3.22971012502363e-24!GO:0051641;cellular localization;5.9664425360027e-24!GO:0051649;establishment of cellular localization;8.19095974079636e-24!GO:0031980;mitochondrial lumen;9.16302210046046e-24!GO:0005759;mitochondrial matrix;9.16302210046046e-24!GO:0006119;oxidative phosphorylation;1.53948945126158e-23!GO:0044455;mitochondrial membrane part;1.00787297495351e-22!GO:0005730;nucleolus;2.07580356873032e-22!GO:0016462;pyrophosphatase activity;2.14425342850831e-22!GO:0005694;chromosome;2.54804569727239e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.23597640475412e-22!GO:0022403;cell cycle phase;5.18726876170697e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.48156377640572e-22!GO:0017111;nucleoside-triphosphatase activity;1.47434978114284e-21!GO:0006457;protein folding;2.16839928828188e-21!GO:0000087;M phase of mitotic cell cycle;4.77378597357972e-21!GO:0006281;DNA repair;1.05420599831023e-20!GO:0007067;mitosis;1.18557080616006e-20!GO:0012505;endomembrane system;4.92751553056869e-20!GO:0022618;protein-RNA complex assembly;7.88670479417415e-20!GO:0016070;RNA metabolic process;1.13805573494643e-19!GO:0042254;ribosome biogenesis and assembly;1.13805573494643e-19!GO:0044427;chromosomal part;1.38682710132463e-19!GO:0005746;mitochondrial respiratory chain;2.30756253983761e-19!GO:0032553;ribonucleotide binding;8.88294130651424e-19!GO:0032555;purine ribonucleotide binding;8.88294130651424e-19!GO:0017076;purine nucleotide binding;1.02983564709328e-18!GO:0005761;mitochondrial ribosome;1.05457788369106e-18!GO:0000313;organellar ribosome;1.05457788369106e-18!GO:0000279;M phase;5.1280533932676e-18!GO:0051301;cell division;5.2577062554474e-18!GO:0009719;response to endogenous stimulus;5.44715567707781e-18!GO:0006260;DNA replication;5.67609337562591e-18!GO:0016874;ligase activity;7.45248195144934e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.89822579201459e-18!GO:0005783;endoplasmic reticulum;1.82880034413019e-17!GO:0006512;ubiquitin cycle;1.89381724716773e-17!GO:0051186;cofactor metabolic process;2.46019667015366e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5726226009795e-17!GO:0008135;translation factor activity, nucleic acid binding;4.26210270411125e-17!GO:0048770;pigment granule;5.78682309478021e-17!GO:0042470;melanosome;5.78682309478021e-17!GO:0050136;NADH dehydrogenase (quinone) activity;6.56367142901288e-17!GO:0003954;NADH dehydrogenase activity;6.56367142901288e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.56367142901288e-17!GO:0044265;cellular macromolecule catabolic process;7.69577025052667e-17!GO:0005524;ATP binding;9.36027620022227e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.02996257018714e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36047983541182e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.39831298519043e-16!GO:0019941;modification-dependent protein catabolic process;2.00426721574614e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.00426721574614e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.17453627454182e-16!GO:0032559;adenyl ribonucleotide binding;2.79692507685842e-16!GO:0043285;biopolymer catabolic process;4.00732100134516e-16!GO:0044257;cellular protein catabolic process;4.2542841296435e-16!GO:0030554;adenyl nucleotide binding;4.89637208581647e-16!GO:0005635;nuclear envelope;5.71371648457565e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.4186419242459e-15!GO:0000375;RNA splicing, via transesterification reactions;1.4186419242459e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.4186419242459e-15!GO:0006605;protein targeting;1.86623695086683e-15!GO:0044432;endoplasmic reticulum part;2.57643263808227e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.92729495056756e-15!GO:0042773;ATP synthesis coupled electron transport;2.92729495056756e-15!GO:0030964;NADH dehydrogenase complex (quinone);3.63773873220026e-15!GO:0045271;respiratory chain complex I;3.63773873220026e-15!GO:0005747;mitochondrial respiratory chain complex I;3.63773873220026e-15!GO:0009057;macromolecule catabolic process;3.94484732249364e-15!GO:0051276;chromosome organization and biogenesis;7.0578071267212e-15!GO:0031965;nuclear membrane;9.51674066663192e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.09181076075229e-14!GO:0030163;protein catabolic process;1.437516071452e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.62155228136758e-14!GO:0051082;unfolded protein binding;3.1581038905789e-14!GO:0044453;nuclear membrane part;4.4280509342712e-14!GO:0008134;transcription factor binding;8.18190394779356e-14!GO:0048193;Golgi vesicle transport;9.40019041595737e-14!GO:0006399;tRNA metabolic process;1.84575368434382e-13!GO:0006364;rRNA processing;2.00566060527921e-13!GO:0044248;cellular catabolic process;2.02584755382283e-13!GO:0003743;translation initiation factor activity;2.05007148899642e-13!GO:0006732;coenzyme metabolic process;2.26687458432832e-13!GO:0000074;regulation of progression through cell cycle;4.01677276856839e-13!GO:0051726;regulation of cell cycle;5.11042155689105e-13!GO:0016072;rRNA metabolic process;9.36852556421354e-13!GO:0042623;ATPase activity, coupled;1.18310692139855e-12!GO:0006413;translational initiation;1.54816597110525e-12!GO:0005794;Golgi apparatus;1.65903152700697e-12!GO:0016604;nuclear body;1.84769081576725e-12!GO:0016887;ATPase activity;3.91370620321272e-12!GO:0043412;biopolymer modification;5.27877525263627e-12!GO:0005643;nuclear pore;6.16744045043893e-12!GO:0009055;electron carrier activity;8.22061308608599e-12!GO:0005793;ER-Golgi intermediate compartment;9.96851696025828e-12!GO:0009259;ribonucleotide metabolic process;1.27368248285678e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.84815116403831e-11!GO:0004386;helicase activity;3.0376471808791e-11!GO:0006913;nucleocytoplasmic transport;3.89804386140584e-11!GO:0065002;intracellular protein transport across a membrane;3.96495759257134e-11!GO:0006163;purine nucleotide metabolic process;3.9740483886385e-11!GO:0006446;regulation of translational initiation;7.04535435916746e-11!GO:0015630;microtubule cytoskeleton;8.46620659759676e-11!GO:0006323;DNA packaging;9.16121497913182e-11!GO:0051169;nuclear transport;9.58879978638411e-11!GO:0006464;protein modification process;2.27368177373132e-10!GO:0009150;purine ribonucleotide metabolic process;2.5820141245263e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.5820141245263e-10!GO:0016192;vesicle-mediated transport;3.48482072424777e-10!GO:0008026;ATP-dependent helicase activity;4.11965683848988e-10!GO:0006461;protein complex assembly;4.58762096916194e-10!GO:0006403;RNA localization;4.99131927549495e-10!GO:0006164;purine nucleotide biosynthetic process;4.99131927549495e-10!GO:0030532;small nuclear ribonucleoprotein complex;5.27701036381117e-10!GO:0000785;chromatin;5.27701036381117e-10!GO:0050657;nucleic acid transport;5.27701036381117e-10!GO:0051236;establishment of RNA localization;5.27701036381117e-10!GO:0050658;RNA transport;5.27701036381117e-10!GO:0009260;ribonucleotide biosynthetic process;5.27701036381117e-10!GO:0065004;protein-DNA complex assembly;5.76476637269035e-10!GO:0012501;programmed cell death;5.78843570123585e-10!GO:0046930;pore complex;6.61108338553568e-10!GO:0005789;endoplasmic reticulum membrane;8.02162539968777e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.60277633747558e-10!GO:0004812;aminoacyl-tRNA ligase activity;8.60277633747558e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.60277633747558e-10!GO:0006915;apoptosis;9.74951159838883e-10!GO:0006333;chromatin assembly or disassembly;1.09522127554828e-09!GO:0008565;protein transporter activity;1.18006780570156e-09!GO:0016607;nuclear speck;1.22549408276002e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.48192855751824e-09!GO:0043038;amino acid activation;1.66611285778503e-09!GO:0006418;tRNA aminoacylation for protein translation;1.66611285778503e-09!GO:0043039;tRNA aminoacylation;1.66611285778503e-09!GO:0009060;aerobic respiration;2.42608596334649e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.83369083500085e-09!GO:0043687;post-translational protein modification;2.87267001080269e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.04721784936244e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.59367629895932e-09!GO:0003712;transcription cofactor activity;5.26765636741532e-09!GO:0008639;small protein conjugating enzyme activity;5.78956408623817e-09!GO:0045333;cellular respiration;5.78956408623817e-09!GO:0009141;nucleoside triphosphate metabolic process;6.05496041331494e-09!GO:0003697;single-stranded DNA binding;6.08095065097318e-09!GO:0017038;protein import;6.58622847649256e-09!GO:0006261;DNA-dependent DNA replication;6.96532636455777e-09!GO:0005788;endoplasmic reticulum lumen;7.26898721568256e-09!GO:0051188;cofactor biosynthetic process;8.93504921390192e-09!GO:0048523;negative regulation of cellular process;9.87188843054273e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.08082371629469e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.08082371629469e-08!GO:0004842;ubiquitin-protein ligase activity;1.23617581968752e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.24985736362095e-08!GO:0000775;chromosome, pericentric region;1.2931018945585e-08!GO:0016779;nucleotidyltransferase activity;1.2933689658757e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.30765458297073e-08!GO:0007005;mitochondrion organization and biogenesis;1.32756597940365e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.56395303376594e-08!GO:0008219;cell death;1.72382135099141e-08!GO:0016265;death;1.72382135099141e-08!GO:0043566;structure-specific DNA binding;1.97292634058283e-08!GO:0006366;transcription from RNA polymerase II promoter;2.28117028271714e-08!GO:0051028;mRNA transport;2.56387728103321e-08!GO:0006334;nucleosome assembly;2.64101341629564e-08!GO:0005819;spindle;2.69865072482414e-08!GO:0007010;cytoskeleton organization and biogenesis;2.77082284253029e-08!GO:0051329;interphase of mitotic cell cycle;2.8839016913286e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.90880646116565e-08!GO:0019787;small conjugating protein ligase activity;3.00505919257097e-08!GO:0009117;nucleotide metabolic process;3.82801424012455e-08!GO:0031497;chromatin assembly;6.51285429763812e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.65296394197818e-08!GO:0016740;transferase activity;6.83534564932705e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.09802200999878e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.09802200999878e-08!GO:0005813;centrosome;7.50968814876408e-08!GO:0006099;tricarboxylic acid cycle;7.50968814876408e-08!GO:0046356;acetyl-CoA catabolic process;7.50968814876408e-08!GO:0050794;regulation of cellular process;7.53855861249335e-08!GO:0015986;ATP synthesis coupled proton transport;8.42216198862723e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.42216198862723e-08!GO:0051325;interphase;9.98896684710011e-08!GO:0046034;ATP metabolic process;1.01519421310352e-07!GO:0005667;transcription factor complex;1.20716596457583e-07!GO:0003899;DNA-directed RNA polymerase activity;1.26019295594741e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.48678112350438e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.6927494288498e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.6927494288498e-07!GO:0009056;catabolic process;1.89553124668245e-07!GO:0006084;acetyl-CoA metabolic process;1.96297635865431e-07!GO:0019829;cation-transporting ATPase activity;2.05728471312066e-07!GO:0030120;vesicle coat;2.13067415520761e-07!GO:0030662;coated vesicle membrane;2.13067415520761e-07!GO:0016881;acid-amino acid ligase activity;2.14613711089079e-07!GO:0016853;isomerase activity;2.16657264152979e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.28163795475132e-07!GO:0005815;microtubule organizing center;2.398471690206e-07!GO:0051187;cofactor catabolic process;2.42776698349418e-07!GO:0048519;negative regulation of biological process;2.87068803210538e-07!GO:0009109;coenzyme catabolic process;2.87068803210538e-07!GO:0008092;cytoskeletal protein binding;2.9157926462078e-07!GO:0005762;mitochondrial large ribosomal subunit;3.08213950203094e-07!GO:0000315;organellar large ribosomal subunit;3.08213950203094e-07!GO:0051246;regulation of protein metabolic process;3.62580142070911e-07!GO:0003924;GTPase activity;4.42512074346229e-07!GO:0009108;coenzyme biosynthetic process;4.86180145885378e-07!GO:0005657;replication fork;5.73218425365467e-07!GO:0048475;coated membrane;5.73218425365467e-07!GO:0030117;membrane coat;5.73218425365467e-07!GO:0000245;spliceosome assembly;6.65460559600939e-07!GO:0045259;proton-transporting ATP synthase complex;8.90753132410788e-07!GO:0007051;spindle organization and biogenesis;9.25832460252334e-07!GO:0008094;DNA-dependent ATPase activity;1.19247271797518e-06!GO:0016491;oxidoreductase activity;1.32055253991445e-06!GO:0006754;ATP biosynthetic process;1.5808426570203e-06!GO:0006753;nucleoside phosphate metabolic process;1.5808426570203e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.79937775638625e-06!GO:0006752;group transfer coenzyme metabolic process;1.84603456992235e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.10886750732861e-06!GO:0051170;nuclear import;3.0727402579795e-06!GO:0016859;cis-trans isomerase activity;3.31435203497864e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.06120051936673e-06!GO:0000314;organellar small ribosomal subunit;4.17998689019941e-06!GO:0005763;mitochondrial small ribosomal subunit;4.17998689019941e-06!GO:0000075;cell cycle checkpoint;4.59236746651039e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.07760715703093e-06!GO:0050789;regulation of biological process;5.46265586974133e-06!GO:0043623;cellular protein complex assembly;5.57708149337829e-06!GO:0016568;chromatin modification;5.97691873107681e-06!GO:0005768;endosome;6.15414004898034e-06!GO:0043069;negative regulation of programmed cell death;6.27651157874327e-06!GO:0006606;protein import into nucleus;6.27651157874327e-06!GO:0032446;protein modification by small protein conjugation;6.38776081106057e-06!GO:0006613;cotranslational protein targeting to membrane;6.92449481507299e-06!GO:0006916;anti-apoptosis;7.05160254178432e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.59105769450651e-06!GO:0042981;regulation of apoptosis;8.23685216170444e-06!GO:0043066;negative regulation of apoptosis;8.25912659980514e-06!GO:0004298;threonine endopeptidase activity;8.84246992700273e-06!GO:0006091;generation of precursor metabolites and energy;8.92697949853782e-06!GO:0016567;protein ubiquitination;9.17922329916854e-06!GO:0030029;actin filament-based process;9.41863070908626e-06!GO:0031252;leading edge;9.79895374047899e-06!GO:0044431;Golgi apparatus part;1.01637318024032e-05!GO:0043067;regulation of programmed cell death;1.05285344786975e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.22696967720788e-05!GO:0045786;negative regulation of progression through cell cycle;1.42400554955305e-05!GO:0044452;nucleolar part;1.54447540601398e-05!GO:0019843;rRNA binding;1.58903068074838e-05!GO:0031324;negative regulation of cellular metabolic process;1.75964682381633e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.82145168591542e-05!GO:0008654;phospholipid biosynthetic process;2.09377425934355e-05!GO:0000151;ubiquitin ligase complex;2.26300206458067e-05!GO:0006793;phosphorus metabolic process;2.42212653503279e-05!GO:0006796;phosphate metabolic process;2.42212653503279e-05!GO:0008033;tRNA processing;2.42819661515137e-05!GO:0003724;RNA helicase activity;2.51609721434175e-05!GO:0045454;cell redox homeostasis;2.52265558153108e-05!GO:0051427;hormone receptor binding;2.70815295126025e-05!GO:0006302;double-strand break repair;2.91991070824785e-05!GO:0043021;ribonucleoprotein binding;3.04356776243602e-05!GO:0005798;Golgi-associated vesicle;4.06534471889367e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.12518808823911e-05!GO:0016787;hydrolase activity;4.93302988583029e-05!GO:0005525;GTP binding;5.34345087045478e-05!GO:0006626;protein targeting to mitochondrion;5.59592252183749e-05!GO:0019899;enzyme binding;5.60031108283008e-05!GO:0035257;nuclear hormone receptor binding;6.053368216654e-05!GO:0030867;rough endoplasmic reticulum membrane;6.1959833058467e-05!GO:0016564;transcription repressor activity;6.34789456592392e-05!GO:0003714;transcription corepressor activity;7.10375315358796e-05!GO:0009892;negative regulation of metabolic process;7.32786513277106e-05!GO:0005048;signal sequence binding;7.67397191793583e-05!GO:0016741;transferase activity, transferring one-carbon groups;7.79762314695377e-05!GO:0043681;protein import into mitochondrion;8.59404299420199e-05!GO:0006383;transcription from RNA polymerase III promoter;8.75377797093978e-05!GO:0044440;endosomal part;9.22550777709629e-05!GO:0010008;endosome membrane;9.22550777709629e-05!GO:0005791;rough endoplasmic reticulum;9.35336165752794e-05!GO:0016310;phosphorylation;0.00010479871697885!GO:0008168;methyltransferase activity;0.000110130354735187!GO:0016023;cytoplasmic membrane-bound vesicle;0.000110184968915249!GO:0016126;sterol biosynthetic process;0.00011275340327791!GO:0009165;nucleotide biosynthetic process;0.000116690694999176!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000117061775221131!GO:0016563;transcription activator activity;0.000117705921848808!GO:0006310;DNA recombination;0.00012085898925542!GO:0031988;membrane-bound vesicle;0.000121057936793149!GO:0051052;regulation of DNA metabolic process;0.000123795484913422!GO:0000776;kinetochore;0.000127534946034974!GO:0003684;damaged DNA binding;0.000131759999296121!GO:0003713;transcription coactivator activity;0.000145733955246363!GO:0007088;regulation of mitosis;0.000150776072260835!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000150843716385673!GO:0006612;protein targeting to membrane;0.000159666488725609!GO:0016363;nuclear matrix;0.000163064867294277!GO:0005769;early endosome;0.000167835920734302!GO:0000139;Golgi membrane;0.000171361477850003!GO:0000786;nucleosome;0.000176426033953137!GO:0004527;exonuclease activity;0.000182050672763184!GO:0003729;mRNA binding;0.000184518280542546!GO:0030880;RNA polymerase complex;0.000184629698480359!GO:0031968;organelle outer membrane;0.000203818223352181!GO:0005874;microtubule;0.000226321563669505!GO:0006839;mitochondrial transport;0.000230941175700216!GO:0000059;protein import into nucleus, docking;0.000237414946982068!GO:0019867;outer membrane;0.000238323382874073!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000242191270777139!GO:0008361;regulation of cell size;0.000269400950078675!GO:0033116;ER-Golgi intermediate compartment membrane;0.000274821108190116!GO:0030133;transport vesicle;0.000279283689632093!GO:0051789;response to protein stimulus;0.000280924535317707!GO:0006986;response to unfolded protein;0.000280924535317707!GO:0003678;DNA helicase activity;0.000282138868044723!GO:0016049;cell growth;0.000286846582484213!GO:0007059;chromosome segregation;0.000288708157529034!GO:0051168;nuclear export;0.000300770145168131!GO:0005770;late endosome;0.000306107746575177!GO:0042802;identical protein binding;0.000342134031676875!GO:0004576;oligosaccharyl transferase activity;0.000353279387184696!GO:0016481;negative regulation of transcription;0.000380666648111023!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000391785056454632!GO:0003690;double-stranded DNA binding;0.000391798357870829!GO:0032561;guanyl ribonucleotide binding;0.000397737376963954!GO:0019001;guanyl nucleotide binding;0.000397737376963954!GO:0019222;regulation of metabolic process;0.000399731521807224!GO:0007093;mitotic cell cycle checkpoint;0.000403673137645433!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000411865580974069!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000417964250788497!GO:0031982;vesicle;0.000419211981633567!GO:0008250;oligosaccharyl transferase complex;0.000430902688800281!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000460638619952936!GO:0000428;DNA-directed RNA polymerase complex;0.000460638619952936!GO:0005885;Arp2/3 protein complex;0.000471643038992634!GO:0031410;cytoplasmic vesicle;0.00050303062556422!GO:0006414;translational elongation;0.00051607522533199!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000534379136506727!GO:0046474;glycerophospholipid biosynthetic process;0.000534395861848864!GO:0001558;regulation of cell growth;0.000558464690623959!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0005732863810051!GO:0005856;cytoskeleton;0.000575106886693922!GO:0007006;mitochondrial membrane organization and biogenesis;0.000612421891267186!GO:0005684;U2-dependent spliceosome;0.000635299751131022!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000636989168031703!GO:0051252;regulation of RNA metabolic process;0.000672436860400855!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000683220281702756!GO:0007052;mitotic spindle organization and biogenesis;0.000700872989769204!GO:0000082;G1/S transition of mitotic cell cycle;0.000735519896046089!GO:0008186;RNA-dependent ATPase activity;0.00077069787613467!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00077937500008878!GO:0005741;mitochondrial outer membrane;0.000792412644448119!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00080679771576662!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00080679771576662!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00080679771576662!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00082328585178392!GO:0051540;metal cluster binding;0.000905540333790618!GO:0051536;iron-sulfur cluster binding;0.000905540333790618!GO:0006695;cholesterol biosynthetic process;0.000913538761379243!GO:0051920;peroxiredoxin activity;0.000944171299348389!GO:0015631;tubulin binding;0.00100968328081566!GO:0030663;COPI coated vesicle membrane;0.00105897999038201!GO:0030126;COPI vesicle coat;0.00105897999038201!GO:0035258;steroid hormone receptor binding;0.00106530830644837!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00112198799209665!GO:0003779;actin binding;0.00113440109703615!GO:0031072;heat shock protein binding;0.00113467280577559!GO:0015629;actin cytoskeleton;0.00114353109783582!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00115880075807251!GO:0048500;signal recognition particle;0.00121476894522784!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00125706351528561!GO:0015002;heme-copper terminal oxidase activity;0.00125706351528561!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00125706351528561!GO:0004129;cytochrome-c oxidase activity;0.00125706351528561!GO:0018196;peptidyl-asparagine modification;0.00130367468238348!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00130367468238348!GO:0009112;nucleobase metabolic process;0.00133631414919673!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00137009739581574!GO:0005905;coated pit;0.00138179123026593!GO:0006402;mRNA catabolic process;0.00142879995574514!GO:0006950;response to stress;0.00145459122870927!GO:0006891;intra-Golgi vesicle-mediated transport;0.00153255962014742!GO:0007017;microtubule-based process;0.00153853810106887!GO:0006275;regulation of DNA replication;0.00157051970363323!GO:0008139;nuclear localization sequence binding;0.00161678581162904!GO:0046483;heterocycle metabolic process;0.00167797175493004!GO:0051287;NAD binding;0.0017171185819589!GO:0043284;biopolymer biosynthetic process;0.00174051869116261!GO:0008312;7S RNA binding;0.00186530137956555!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00198232619748752!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00200619973574412!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00200619973574412!GO:0004004;ATP-dependent RNA helicase activity;0.0020282329564102!GO:0003682;chromatin binding;0.00210793237930922!GO:0000049;tRNA binding;0.00222845713467319!GO:0031124;mRNA 3'-end processing;0.00236011795504011!GO:0008610;lipid biosynthetic process;0.00246724908049935!GO:0001726;ruffle;0.0025025039409961!GO:0043488;regulation of mRNA stability;0.0025082724269051!GO:0043487;regulation of RNA stability;0.0025082724269051!GO:0004518;nuclease activity;0.00257442733610449!GO:0006595;polyamine metabolic process;0.00261533159386379!GO:0051539;4 iron, 4 sulfur cluster binding;0.00275016879064041!GO:0000228;nuclear chromosome;0.00291171860288093!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00314846936970896!GO:0045047;protein targeting to ER;0.00314846936970896!GO:0030137;COPI-coated vesicle;0.00320880656735782!GO:0009116;nucleoside metabolic process;0.00322872073289407!GO:0008180;signalosome;0.00325793216431569!GO:0032508;DNA duplex unwinding;0.00326179614736355!GO:0032392;DNA geometric change;0.00326179614736355!GO:0051087;chaperone binding;0.00343950217697574!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00363873925499926!GO:0065007;biological regulation;0.00363873925499926!GO:0043596;nuclear replication fork;0.00365781519348743!GO:0005758;mitochondrial intermembrane space;0.00365781519348743!GO:0030658;transport vesicle membrane;0.0036764240919555!GO:0050662;coenzyme binding;0.00383453660659313!GO:0006401;RNA catabolic process;0.00386452429274135!GO:0007050;cell cycle arrest;0.00392988601104153!GO:0016272;prefoldin complex;0.00404142830075618!GO:0006144;purine base metabolic process;0.0041363203336977!GO:0005865;striated muscle thin filament;0.00419989942220384!GO:0030132;clathrin coat of coated pit;0.00423886599568231!GO:0048471;perinuclear region of cytoplasm;0.00427724708380899!GO:0006220;pyrimidine nucleotide metabolic process;0.00431816893682602!GO:0004674;protein serine/threonine kinase activity;0.00437379728547553!GO:0000922;spindle pole;0.00438719282190072!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00439904107912805!GO:0007346;regulation of progression through mitotic cell cycle;0.00442112155811754!GO:0051128;regulation of cellular component organization and biogenesis;0.004510759011149!GO:0031970;organelle envelope lumen;0.00458805246375791!GO:0005876;spindle microtubule;0.0047128548932403!GO:0042770;DNA damage response, signal transduction;0.004714003790566!GO:0046489;phosphoinositide biosynthetic process;0.00478240559273963!GO:0003746;translation elongation factor activity;0.00493459604290563!GO:0046467;membrane lipid biosynthetic process;0.00499890542652647!GO:0030134;ER to Golgi transport vesicle;0.005030871517113!GO:0000910;cytokinesis;0.00506002485565017!GO:0030118;clathrin coat;0.00549510921263231!GO:0030521;androgen receptor signaling pathway;0.00556271324655966!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00557026276859439!GO:0004003;ATP-dependent DNA helicase activity;0.00568887787737151!GO:0001725;stress fiber;0.00577356913581171!GO:0032432;actin filament bundle;0.00577356913581171!GO:0030127;COPII vesicle coat;0.00587299490502635!GO:0012507;ER to Golgi transport vesicle membrane;0.00587299490502635!GO:0016044;membrane organization and biogenesis;0.00609302419552152!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00611446841493749!GO:0000178;exosome (RNase complex);0.00617040148882995!GO:0006268;DNA unwinding during replication;0.00622664114848859!GO:0006352;transcription initiation;0.00624426633112734!GO:0017166;vinculin binding;0.00642534097265099!GO:0030176;integral to endoplasmic reticulum membrane;0.00663102547452173!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00672732027070091!GO:0030027;lamellipodium;0.00686699181298151!GO:0019752;carboxylic acid metabolic process;0.00715077112841256!GO:0005637;nuclear inner membrane;0.00715122149683852!GO:0006740;NADPH regeneration;0.00741497732241047!GO:0006098;pentose-phosphate shunt;0.00741497732241047!GO:0006082;organic acid metabolic process;0.0075327175279128!GO:0006520;amino acid metabolic process;0.0077579510506354!GO:0031570;DNA integrity checkpoint;0.00808277364197254!GO:0044262;cellular carbohydrate metabolic process;0.00819588870490246!GO:0043022;ribosome binding;0.00831518584655172!GO:0005832;chaperonin-containing T-complex;0.0083531087176061!GO:0016197;endosome transport;0.00841447142203506!GO:0008408;3'-5' exonuclease activity;0.00847667859879312!GO:0006007;glucose catabolic process;0.00848070839332478!GO:0000725;recombinational repair;0.00873046605191295!GO:0000724;double-strand break repair via homologous recombination;0.00873046605191295!GO:0048522;positive regulation of cellular process;0.00892570818082787!GO:0008243;plasminogen activator activity;0.00894346169024905!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0090556219548512!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00926796056163374!GO:0015992;proton transport;0.00960723397555355!GO:0016251;general RNA polymerase II transcription factor activity;0.00979683405961899!GO:0008047;enzyme activator activity;0.00980767149272934!GO:0022890;inorganic cation transmembrane transporter activity;0.00983446591519186!GO:0032984;macromolecular complex disassembly;0.0098381071308264!GO:0006289;nucleotide-excision repair;0.00983893652827538!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00983893652827538!GO:0009303;rRNA transcription;0.0100372243449485!GO:0009451;RNA modification;0.0101667306535503!GO:0006818;hydrogen transport;0.0101996122424925!GO:0043601;nuclear replisome;0.010398622272837!GO:0030894;replisome;0.010398622272837!GO:0048487;beta-tubulin binding;0.0105492033550931!GO:0030660;Golgi-associated vesicle membrane;0.0106517193367524!GO:0006611;protein export from nucleus;0.010738891980583!GO:0006405;RNA export from nucleus;0.010738891980583!GO:0004532;exoribonuclease activity;0.010738891980583!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.010738891980583!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0108055902484071!GO:0050681;androgen receptor binding;0.0108390506274588!GO:0031901;early endosome membrane;0.0108415835766662!GO:0031123;RNA 3'-end processing;0.0110417345515485!GO:0008022;protein C-terminus binding;0.0113272564680883!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0114578415345109!GO:0000339;RNA cap binding;0.0116674577269592!GO:0065009;regulation of a molecular function;0.0117479796816431!GO:0009124;nucleoside monophosphate biosynthetic process;0.0117479796816431!GO:0009123;nucleoside monophosphate metabolic process;0.0117479796816431!GO:0031625;ubiquitin protein ligase binding;0.0124062020425485!GO:0016408;C-acyltransferase activity;0.0124062020425485!GO:0003711;transcription elongation regulator activity;0.0125297276728249!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.012646666465228!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0127519106627115!GO:0005096;GTPase activator activity;0.0127797755132681!GO:0005869;dynactin complex;0.0132050146820716!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0132655495520793!GO:0005669;transcription factor TFIID complex;0.0133055219086177!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0136885649803313!GO:0015399;primary active transmembrane transporter activity;0.0136885649803313!GO:0005862;muscle thin filament tropomyosin;0.0138074682143276!GO:0006270;DNA replication initiation;0.0140363950343424!GO:0006541;glutamine metabolic process;0.0143494373022033!GO:0000792;heterochromatin;0.0143600443488686!GO:0043241;protein complex disassembly;0.0145679345422627!GO:0045941;positive regulation of transcription;0.014779738156787!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0147965054489333!GO:0000287;magnesium ion binding;0.0153247312962278!GO:0006284;base-excision repair;0.0153616144055916!GO:0007243;protein kinase cascade;0.0156276617513412!GO:0003756;protein disulfide isomerase activity;0.0156276617513412!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0156276617513412!GO:0030833;regulation of actin filament polymerization;0.0157279590729747!GO:0019206;nucleoside kinase activity;0.0157279590729747!GO:0007021;tubulin folding;0.0160292761960792!GO:0016860;intramolecular oxidoreductase activity;0.0161408726746245!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0162314622829195!GO:0051101;regulation of DNA binding;0.0164747804713399!GO:0043624;cellular protein complex disassembly;0.0167172931461563!GO:0006778;porphyrin metabolic process;0.0168311159336617!GO:0033013;tetrapyrrole metabolic process;0.0168311159336617!GO:0006979;response to oxidative stress;0.0175559778667158!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0175966536368014!GO:0032200;telomere organization and biogenesis;0.0175966536368014!GO:0000723;telomere maintenance;0.0175966536368014!GO:0033673;negative regulation of kinase activity;0.0176275615605125!GO:0006469;negative regulation of protein kinase activity;0.0176275615605125!GO:0031323;regulation of cellular metabolic process;0.0176275615605125!GO:0006378;mRNA polyadenylation;0.0183197907154559!GO:0048146;positive regulation of fibroblast proliferation;0.0184117048708622!GO:0048144;fibroblast proliferation;0.0184117048708622!GO:0048145;regulation of fibroblast proliferation;0.0184117048708622!GO:0030041;actin filament polymerization;0.0185790358796537!GO:0006650;glycerophospholipid metabolic process;0.0190525362160657!GO:0046112;nucleobase biosynthetic process;0.0195831506309793!GO:0006733;oxidoreduction coenzyme metabolic process;0.0196213116523514!GO:0000084;S phase of mitotic cell cycle;0.0203048440923988!GO:0051348;negative regulation of transferase activity;0.0203442284154921!GO:0040008;regulation of growth;0.0207827644721034!GO:0033559;unsaturated fatty acid metabolic process;0.0212313525271332!GO:0006636;unsaturated fatty acid biosynthetic process;0.0212313525271332!GO:0008629;induction of apoptosis by intracellular signals;0.0214158564094706!GO:0008632;apoptotic program;0.0219167402963218!GO:0048037;cofactor binding;0.0219883666614953!GO:0043189;H4/H2A histone acetyltransferase complex;0.0219902437320481!GO:0016407;acetyltransferase activity;0.0220313031808134!GO:0031529;ruffle organization and biogenesis;0.0223732957595273!GO:0016584;nucleosome positioning;0.0223732957595273!GO:0030496;midbody;0.0225498921620426!GO:0035267;NuA4 histone acetyltransferase complex;0.0225912539718429!GO:0006118;electron transport;0.0228689551077333!GO:0030032;lamellipodium biogenesis;0.0228954887541138!GO:0040029;regulation of gene expression, epigenetic;0.0233616953242704!GO:0009161;ribonucleoside monophosphate metabolic process;0.0233616953242704!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0233616953242704!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0235497090766265!GO:0045039;protein import into mitochondrial inner membrane;0.0235497090766265!GO:0051053;negative regulation of DNA metabolic process;0.0237213573450027!GO:0030031;cell projection biogenesis;0.023792220727826!GO:0006376;mRNA splice site selection;0.0241535782355689!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0241535782355689!GO:0000819;sister chromatid segregation;0.024206021478342!GO:0045892;negative regulation of transcription, DNA-dependent;0.024206021478342!GO:0000070;mitotic sister chromatid segregation;0.0243392255467914!GO:0030508;thiol-disulfide exchange intermediate activity;0.0243502775141441!GO:0000077;DNA damage checkpoint;0.0243773301398979!GO:0005663;DNA replication factor C complex;0.0248711685676919!GO:0022415;viral reproductive process;0.0251053676262922!GO:0000209;protein polyubiquitination;0.0255493591795477!GO:0006506;GPI anchor biosynthetic process;0.025804721241287!GO:0000096;sulfur amino acid metabolic process;0.0261802873574874!GO:0030119;AP-type membrane coat adaptor complex;0.0261861482441828!GO:0032981;mitochondrial respiratory chain complex I assembly;0.026259039799021!GO:0010257;NADH dehydrogenase complex assembly;0.026259039799021!GO:0033108;mitochondrial respiratory chain complex assembly;0.026259039799021!GO:0006350;transcription;0.0264104169464078!GO:0051098;regulation of binding;0.0264104169464078!GO:0007517;muscle development;0.0264512179530888!GO:0045792;negative regulation of cell size;0.0267002002968076!GO:0030308;negative regulation of cell growth;0.0271904454937989!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0272498971060845!GO:0006497;protein amino acid lipidation;0.0275857109336682!GO:0000152;nuclear ubiquitin ligase complex;0.0276491926290182!GO:0006509;membrane protein ectodomain proteolysis;0.0276593611517029!GO:0033619;membrane protein proteolysis;0.0276593611517029!GO:0048468;cell development;0.0279719227493811!GO:0004177;aminopeptidase activity;0.0283554706334883!GO:0045893;positive regulation of transcription, DNA-dependent;0.0288635292219415!GO:0005773;vacuole;0.0291436871864826!GO:0004448;isocitrate dehydrogenase activity;0.0293071548988572!GO:0006739;NADP metabolic process;0.029489163158461!GO:0030145;manganese ion binding;0.030334256415456!GO:0030125;clathrin vesicle coat;0.0304547104822354!GO:0030665;clathrin coated vesicle membrane;0.0304547104822354!GO:0046128;purine ribonucleoside metabolic process;0.0304716955892414!GO:0042278;purine nucleoside metabolic process;0.0304716955892414!GO:0006779;porphyrin biosynthetic process;0.0305712055896456!GO:0033014;tetrapyrrole biosynthetic process;0.0305712055896456!GO:0035035;histone acetyltransferase binding;0.030931384502655!GO:0031371;ubiquitin conjugating enzyme complex;0.031332144379522!GO:0005732;small nucleolar ribonucleoprotein complex;0.031612896207744!GO:0042393;histone binding;0.0322702361380772!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0325772662564323!GO:0033043;regulation of organelle organization and biogenesis;0.0325772662564323!GO:0006505;GPI anchor metabolic process;0.0332135249506122!GO:0032259;methylation;0.0333562306635464!GO:0000793;condensed chromosome;0.0334099761227547!GO:0051320;S phase;0.033476401465012!GO:0030433;ER-associated protein catabolic process;0.033615227510573!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.033615227510573!GO:0030911;TPR domain binding;0.0338596175860712!GO:0008538;proteasome activator activity;0.0344140328441986!GO:0009081;branched chain family amino acid metabolic process;0.0344583728203471!GO:0004523;ribonuclease H activity;0.034529069745344!GO:0006596;polyamine biosynthetic process;0.0347778095751794!GO:0008234;cysteine-type peptidase activity;0.0352247638122209!GO:0007264;small GTPase mediated signal transduction;0.0357417504231509!GO:0042026;protein refolding;0.0363538175164113!GO:0051537;2 iron, 2 sulfur cluster binding;0.0367534071537482!GO:0000175;3'-5'-exoribonuclease activity;0.0370488602295449!GO:0008143;poly(A) binding;0.037359326724425!GO:0030865;cortical cytoskeleton organization and biogenesis;0.037359326724425!GO:0009262;deoxyribonucleotide metabolic process;0.037359326724425!GO:0006360;transcription from RNA polymerase I promoter;0.03750554237837!GO:0009119;ribonucleoside metabolic process;0.0376308629174113!GO:0005784;translocon complex;0.0376332199867238!GO:0030518;steroid hormone receptor signaling pathway;0.0377259608379418!GO:0031577;spindle checkpoint;0.037726948461747!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0378078324494123!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0378078324494123!GO:0043414;biopolymer methylation;0.0378078324494123!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0380666042935672!GO:0019783;small conjugating protein-specific protease activity;0.0383086136684457!GO:0050178;phenylpyruvate tautomerase activity;0.038556856901822!GO:0006892;post-Golgi vesicle-mediated transport;0.0393445963407626!GO:0008299;isoprenoid biosynthetic process;0.0393885676187675!GO:0042168;heme metabolic process;0.0403757322706159!GO:0006607;NLS-bearing substrate import into nucleus;0.0408540117761655!GO:0006338;chromatin remodeling;0.0408540117761655!GO:0008652;amino acid biosynthetic process;0.0413996132133216!GO:0008154;actin polymerization and/or depolymerization;0.0415463656055009!GO:0004843;ubiquitin-specific protease activity;0.0416985702048386!GO:0008017;microtubule binding;0.0416985702048386!GO:0000726;non-recombinational repair;0.0418797363658805!GO:0044430;cytoskeletal part;0.0426545076230174!GO:0030131;clathrin adaptor complex;0.0427299251266637!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0428637917843243!GO:0005100;Rho GTPase activator activity;0.0434648528110161!GO:0042158;lipoprotein biosynthetic process;0.043511840911053!GO:0007569;cell aging;0.0436000396025661!GO:0009225;nucleotide-sugar metabolic process;0.0438588211233951!GO:0022411;cellular component disassembly;0.0442863729307379!GO:0015036;disulfide oxidoreductase activity;0.044695757058673!GO:0030659;cytoplasmic vesicle membrane;0.0455109142606161!GO:0003887;DNA-directed DNA polymerase activity;0.0455109142606161!GO:0008097;5S rRNA binding;0.0465152083346611!GO:0006417;regulation of translation;0.0465152083346611!GO:0044454;nuclear chromosome part;0.0465152083346611!GO:0000781;chromosome, telomeric region;0.0469782476273577!GO:0007004;telomere maintenance via telomerase;0.0472749722974426!GO:0003702;RNA polymerase II transcription factor activity;0.0475565430587453!GO:0005680;anaphase-promoting complex;0.048141821917181!GO:0006400;tRNA modification;0.0481547666294428!GO:0005850;eukaryotic translation initiation factor 2 complex;0.048179508915046!GO:0000123;histone acetyltransferase complex;0.0483170244461438
|sample_id=11459
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle
|top_motifs=NKX3-1:1.32918982569;NR3C1:1.21715964299;TFDP1:1.21077742298;RXR{A,B,G}:1.1690623629;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15612512097;SRF:1.14437992248;E2F1..5:1.11715537782;POU3F1..4:1.07316271712;ALX4:1.06314440746;HES1:0.974545485156;POU1F1:0.947924912669;GFI1:0.947917551617;EN1,2:0.854857309452;GFI1B:0.797172530709;TEAD1:0.795231920816;UFEwm:0.794940581357;MEF2{A,B,C,D}:0.786410528187;NKX2-2,8:0.7184468274;MYB:0.695766193336;NFY{A,B,C}:0.667906682098;TBP:0.656115082885;GZF1:0.651558884071;PBX1:0.642488603243;PAX3,7:0.630265219035;YY1:0.630041766244;ZNF143:0.616183763733;MYBL2:0.614523366372;HOX{A5,B5}:0.608027712929;NANOG{mouse}:0.597658551384;ELK1,4_GABP{A,B1}:0.583710720476;ZNF238:0.566078578554;RXRA_VDR{dimer}:0.562693008617;TAL1_TCF{3,4,12}:0.558892807911;MYOD1:0.550777952311;FOXP1:0.535660486138;NKX2-1,4:0.530973951865;ESRRA:0.500815571664;TFAP4:0.49635374791;EVI1:0.489507110682;SOX17:0.487359242711;PITX1..3:0.485856375715;PAX1,9:0.480253965187;PAX8:0.476003481809;HSF1,2:0.470107510629;AIRE:0.455045513664;TLX1..3_NFIC{dimer}:0.434681940415;CDC5L:0.430441156434;TOPORS:0.429964684219;STAT5{A,B}:0.420056282565;KLF4:0.41444882431;HOX{A4,D4}:0.408646965907;PDX1:0.391725286657;FOXL1:0.387474878987;NHLH1,2:0.362043464792;GLI1..3:0.360619537002;GCM1,2:0.337537667375;ESR1:0.336010503861;PAX5:0.311164413203;NR1H4:0.30357682823;NR5A1,2:0.300575719558;GATA4:0.299680743773;TBX4,5:0.294505185148;AHR_ARNT_ARNT2:0.278451206945;GTF2A1,2:0.26906572362;PAX4:0.252080025078;NRF1:0.23195881911;LEF1_TCF7_TCF7L1,2:0.2261011916;BACH2:0.223223499025;IKZF1:0.215934850815;POU2F1..3:0.214907162759;SPZ1:0.2097419897;HOXA9_MEIS1:0.202222334855;TFCP2:0.171241294962;CREB1:0.17006658915;SOX5:0.154744399361;NFIX:0.151866874506;XCPE1{core}:0.139298550944;XBP1:0.135717700805;EBF1:0.133669680096;MZF1:0.125001270312;FOS_FOS{B,L1}_JUN{B,D}:0.103402886715;ZIC1..3:0.0946058450638;TGIF1:0.0917563954619;NKX2-3_NKX2-5:0.0872804588065;NFE2L1:0.0642728875681;PRDM1:0.0606796403654;TP53:0.059049604221;T:0.0522697657942;ZNF384:0.0487736398818;TFAP2{A,C}:0.0480590919038;ONECUT1,2:0.0295461903724;GTF2I:0.0241484936689;HIC1:0.00555246087431;PRRX1,2:-0.0086081992453;FOSL2:-0.0167588769942;FOXD3:-0.0199312576963;AR:-0.0449752284634;HIF1A:-0.0618079386335;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0810592180071;ATF6:-0.0820207866852;HLF:-0.0850064716758;HNF1A:-0.106342913028;PATZ1:-0.106584459316;ZBTB16:-0.109002584704;CDX1,2,4:-0.113248431354;NFKB1_REL_RELA:-0.113511605471;EGR1..3:-0.114896908731;ELF1,2,4:-0.115153475819;ZNF148:-0.119805994171;ZFP161:-0.120158943427;RUNX1..3:-0.131121855727;POU6F1:-0.142678784409;ALX1:-0.158990686744;CEBPA,B_DDIT3:-0.166795619574;HNF4A_NR2F1,2:-0.178244409166;TFAP2B:-0.183848290457;NR6A1:-0.184525076667;SP1:-0.193751417456;STAT1,3:-0.193925663362;SOX{8,9,10}:-0.194209067461;MTE{core}:-0.198809288094;bHLH_family:-0.199570277042;LHX3,4:-0.204575835748;BREu{core}:-0.214393823848;MAZ:-0.218168276443;NFATC1..3:-0.223597054308;NFE2:-0.233135796183;TEF:-0.241233439293;HMGA1,2:-0.25474118938;SMAD1..7,9:-0.256396681266;FOXM1:-0.258053732817;ARID5B:-0.263896939117;RFX1:-0.273368963714;STAT2,4,6:-0.288197115191;NKX6-1,2:-0.295048457775;NFE2L2:-0.29534726387;JUN:-0.309815502232;ZBTB6:-0.311297259289;REST:-0.311302881468;RBPJ:-0.312955273453;MTF1:-0.31888655756;HAND1,2:-0.32931390684;NKX3-2:-0.332243798507;PAX6:-0.344916465546;CUX2:-0.346440832577;IKZF2:-0.346841173199;DMAP1_NCOR{1,2}_SMARC:-0.386152917033;PAX2:-0.390937914185;ZNF423:-0.393032508735;CRX:-0.394795685561;OCT4_SOX2{dimer}:-0.396067840496;PPARG:-0.39984073869;ATF4:-0.410216628792;ADNP_IRX_SIX_ZHX:-0.418917965476;MAFB:-0.419609197878;RREB1:-0.444897797101;LMO2:-0.445788001247;DBP:-0.450144425922;HMX1:-0.454219076472;NFIL3:-0.455384361058;MED-1{core}:-0.456569646526;SPI1:-0.463345617493;RFX2..5_RFXANK_RFXAP:-0.467986879457;SOX2:-0.484106857401;ATF5_CREB3:-0.508446940017;FOXP3:-0.529940152625;HBP1_HMGB_SSRP1_UBTF:-0.552474874685;MYFfamily:-0.571558275212;SPIB:-0.580744819707;VSX1,2:-0.587699836689;SNAI1..3:-0.604811249411;GATA6:-0.614338568025;ATF2:-0.615629224319;ETS1,2:-0.617818481246;FOXQ1:-0.644333076828;FOX{I1,J2}:-0.64466198261;HOX{A6,A7,B6,B7}:-0.667007983174;IRF1,2:-0.707661282964;FOXA2:-0.774290543499;POU5F1:-0.804815669203;FOXO1,3,4:-0.807864133645;BPTF:-0.808019101426;NANOG:-0.857215138796;FOX{F1,F2,J1}:-0.875636086563;IRF7:-0.883047983917;RORA:-0.920575421113;ZEB1:-0.986888450743;TLX2:-0.990491566916;EP300:-1.11438322851;FOXN1:-1.11663940804;SREBF1,2:-1.14100984833;FOX{D1,D2}:-1.17562531462
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11459-119B1;search_select_hide=table117:FF:11459-119B1
}}
}}

Latest revision as of 18:02, 4 June 2020

Name:Skeletal Muscle Cells, donor6
Species:Human (Homo sapiens)
Library ID:CNhs12060
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexunknown
agefetal
cell typeskeletal muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4820
catalog numberSC3505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005970
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12060 CAGE DRX008457 DRR009329
Accession ID Hg19

Library idBAMCTSS
CNhs12060 DRZ000754 DRZ002139
Accession ID Hg38

Library idBAMCTSS
CNhs12060 DRZ012104 DRZ013489
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0708
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.513
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.0561
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.15
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0.0561
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.15
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0186
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.262
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.394
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.203
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.212
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.262
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.476
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00513
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0061
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.523
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0561
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.15
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.15
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.38
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.733
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.15
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.293
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.524
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12060

Jaspar motifP-value
MA0002.20.0466
MA0003.10.701
MA0004.10.64
MA0006.10.749
MA0007.10.211
MA0009.10.281
MA0014.10.816
MA0017.10.438
MA0018.20.33
MA0019.10.604
MA0024.11.4083e-9
MA0025.10.0208
MA0027.10.362
MA0028.12.10257e-4
MA0029.10.349
MA0030.10.00156
MA0031.12.46809e-4
MA0035.20.0412
MA0038.10.0188
MA0039.20.394
MA0040.10.0956
MA0041.10.188
MA0042.10.186
MA0043.10.0142
MA0046.10.119
MA0047.20.104
MA0048.10.049
MA0050.19.39505e-8
MA0051.12.21444e-6
MA0052.10.00117
MA0055.10.00119
MA0057.10.954
MA0058.10.962
MA0059.10.0236
MA0060.11.92145e-5
MA0061.10.135
MA0062.20.664
MA0065.20.329
MA0066.10.595
MA0067.10.109
MA0068.10.222
MA0069.10.371
MA0070.10.433
MA0071.10.423
MA0072.10.474
MA0073.10.492
MA0074.10.89
MA0076.10.0104
MA0077.10.891
MA0078.10.88
MA0079.20.177
MA0080.26.68197e-14
MA0081.10.0162
MA0083.17.01009e-5
MA0084.10.0716
MA0087.10.911
MA0088.11.39222e-5
MA0090.10.0026
MA0091.10.0491
MA0092.10.75
MA0093.10.663
MA0099.20.199
MA0100.10.122
MA0101.10.251
MA0102.26.79728e-4
MA0103.11.52867e-4
MA0104.20.00456
MA0105.10.583
MA0106.10.254
MA0107.10.0386
MA0108.21.83446e-5
MA0111.10.865
MA0112.20.42
MA0113.10.189
MA0114.10.516
MA0115.10.912
MA0116.10.356
MA0117.10.384
MA0119.10.159
MA0122.10.928
MA0124.10.844
MA0125.10.76
MA0131.10.766
MA0135.10.899
MA0136.11.64005e-10
MA0137.20.0367
MA0138.20.761
MA0139.10.1
MA0140.10.251
MA0141.10.103
MA0142.10.0795
MA0143.10.216
MA0144.10.058
MA0145.10.953
MA0146.10.656
MA0147.10.00307
MA0148.10.039
MA0149.10.651
MA0150.10.0371
MA0152.10.115
MA0153.10.436
MA0154.10.204
MA0155.10.926
MA0156.18.87055e-6
MA0157.16.88793e-4
MA0159.10.412
MA0160.10.167
MA0162.10.0642
MA0163.10.0666
MA0164.10.772
MA0258.10.671
MA0259.10.0294



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12060

Novel motifP-value
10.528
100.0895
1000.097
1010.201
1020.624
1030.183
1040.584
1050.572
1060.00982
1070.345
1080.935
1090.457
110.419
1100.0293
1110.456
1120.0254
1130.42
1140.425
1150.956
1160.139
1170.262
1180.987
1190.941
120.671
1200.102
1210.599
1220.00924
1230.434
1240.187
1250.297
1260.665
1270.56
1280.0733
1290.444
130.0514
1300.0931
1310.613
1320.9
1330.79
1340.474
1350.0417
1360.853
1370.0905
1380.089
1390.00994
140.107
1400.152
1410.856
1420.406
1430.55
1440.762
1450.503
1460.909
1470.337
1480.669
1490.868
150.319
1500.34
1510.699
1520.857
1530.538
1540.702
1550.0143
1560.368
1570.185
1580.0251
1590.237
160.581
1600.215
1610.812
1620.572
1630.948
1640.419
1650.0325
1660.55
1670.841
1680.941
1690.744
170.94
180.875
190.235
20.903
200.823
210.0302
220.954
230.0771
240.699
250.541
260.0933
270.398
280.175
290.656
30.739
300.736
310.507
320.0132
330.278
340.589
350.261
360.774
370.506
380.741
390.3
40.0932
400.555
410.0185
420.974
430.515
440.356
450.0574
460.989
470.549
480.421
490.455
50.197
500.148
510.996
520.151
530.614
540.671
550.558
560.855
570.481
580.0544
590.785
60.672
600.0324
610.688
620.151
630.731
640.559
650.707
660.314
670.847
680.76
690.922
70.644
700.00336
710.379
720.0286
730.248
740.991
750.704
760.565
770.78
780.97
790.318
80.189
800.0444
810.309
820.0103
830.966
840.956
850.0497
860.306
870.15
880.718
890.383
90.926
900.176
910.452
920.491
930.75
940.647
950.0541
960.568
970.808
980.312
999.34638e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12060


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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