FF:11466-119B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005777 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005777 | ||
|accession_numbers=CAGE;DRX008515;DRR009387;DRZ000812;DRZ002197;DRZ012162;DRZ013547 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036998;DRR041364;DRZ007006 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002601 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000185 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.56!40.09!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.51!31.57!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.48!48.60!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.45!777.28!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.37!27.67!FOXF1;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.96!DRAP1;;chr1:170633348..170633399,+!p2@PRRX1!1.34!28.03!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.16!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.38!ZBED1;;chr3:141150883..141150961,+!p6@ZBTB38!1.24!16.32!ZBTB38;;chr9:77112244..77112262,+!p1@RORB!1.23!18.09!RORB;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.50!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.21!48.96!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.70!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.16!13.48!TBX3;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.76!DRAP1;;chr3:25470156..25470227,+!p2@RARB!1.13!12.42!RARB;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.37!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.71!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.35!HOXA11;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.74!HIC1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.41!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!1.03!12.42!DRAP1;;chr17:38256799..38256815,-!p3@NR1D1!0.99!16.32!NR1D1;;chr15:96873984..96873999,+!p3@NR2F2!0.98!63.86!NR2F2;;chr2:66662281..66662308,+!p1@MEIS1!0.98!30.15!MEIS1;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.77!NFIX;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.51!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.97!32.99!FOSL1;;chr14:24837368..24837401,+!p1@NFATC4!0.97!20.22!NFATC4;;chr11:32457075..32457095,-!p1@WT1!0.96!8.16!WT1;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.90!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.22!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.94!66.70!TBX3;;chr11:65687158..65687216,+!p4@DRAP1!0.93!45.05!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.93!7.45!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.92!29.09!MEIS1;;chr12:66218255..66218304,+!p3@HMGA2!0.92!20.58!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.92!12.77!TBX2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.42!TWIST2;;chr11:65667846..65667868,-!p1@FOSL1!0.90!192.99!FOSL1;;chr17:38256822..38256851,-!p1@NR1D1!0.88!54.63!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.87!TBX2;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.39!FOXL2;;chr7:27224795..27224840,-!p2@HOXA11!0.87!6.39!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!0.85!8.16!PRDM8;;chr15:57511589..57511608,+!p4@TCF12!0.85!6.03!TCF12;;chr1:170632250..170632277,+!p7@PRRX1!0.85!6.03!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.03!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.35!BHLHE41;;chr1:158979792..158979814,+!p2@IFI16!0.83!59.60!IFI16;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.90!FOXC2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.68!SMAD3;;chr7:27239703..27239715,-!p1@HOXA13!0.82!5.68!HOXA13;;chr12:115121770..115121781,-!p4@TBX3!0.82!5.68!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.82!5.68!ALX1;;chr14:33403881..33403924,+!p1@NPAS3!0.80!5.32!NPAS3;;chr6:34204672..34204692,+!p1@HMGA1!0.79!634.67!HMGA1;;chr3:25469724..25469773,+!p1@RARB!0.79!7.80!RARB;;chr7:14029283..14029311,-!p1@ETV1!0.78!29.09!ETV1;;chr11:65687243..65687276,+!p8@DRAP1!0.78!7.10!DRAP1;;chr3:128212033..128212051,-!p1@GATA2!0.78!4.97!GATA2;;chr17:1958388..1958404,+!p1@HIC1!0.77!34.41!HIC1;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.22!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.16!CREB3L1;;chr16:86612320..86612394,+!p1@FOXL1!0.75!4.61!FOXL1;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.75!4.61!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.75!AEBP1;;chr2:19558373..19558392,-!p1@OSR1!0.73!13.13!OSR1;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.93!SOX15;;chr3:141121847..141121868,+!p5@ZBTB38!0.72!6.74!ZBTB38;;chr19:45260775..45260838,+!p5@BCL3!0.72!5.68!BCL3;;chr10:119303078..119303169,+!p2@EMX2!0.72!4.26!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.72!4.26!RFX8;;chr3:141151009..141151033,+!p10@ZBTB38!0.72!4.26!ZBTB38;;chr2:66662895..66662907,+!p3@MEIS1!0.71!5.32!MEIS1;;chr4:26322267..26322334,+!p3@RBPJ!0.70!10.64!RBPJ;;chr10:63809106..63809127,+!p1@ARID5B!0.69!60.31!ARID5B;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.60!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.69!41.51!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.90!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.69!3.90!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.68!39.02!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.68!23.77!DRAP1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.68!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.97!SOX5;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.61!DRAP1;;chr1:151032860..151032918,+!p1@MLLT11!0.67!50.38!MLLT11;;chr15:96869114..96869160,+!p11@NR2F2!0.67!5.32!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.66!25.54!GATA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.66!17.38!ZFHX4;;chr1:170632137..170632172,+!p10@PRRX1!0.66!3.55!PRRX1;;chr9:77112225..77112238,+!p2@RORB!0.66!3.55!RORB;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.39!FOXP2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.03!RUNX1;;chr12:53614115..53614154,-!p1@RARG!0.64!20.93!RARG;;chr9:16870710..16870763,-!p1@BNC2!0.64!6.39!BNC2;;chr5:176738887..176738934,-!p1@MXD3!0.63!25.90!MXD3;;chr5:158526917..158526932,-!p1@EBF1!0.63!9.22!EBF1;;chr1:221052700..221052730,+!p5@HLX!0.63!5.32!HLX;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.58!ARNTL2;;chr7:14028488..14028516,-!p2@ETV1!0.62!3.55!ETV1;;chr2:66662396..66662407,+!p4@MEIS1!0.62!3.19!MEIS1;;chr3:141121820..141121838,+!p9@ZBTB38!0.62!3.19!ZBTB38;;chr16:51185172..51185197,-!p1@SALL1!0.62!3.19!SALL1;;chr15:96873921..96873946,+!p1@NR2F2!0.61!103.94!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.61!22.35!SREBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.03!ZFP106;;chr8:145159846..145159889,+!p6@MAF1!0.61!4.61!MAF1;;chr1:221052733..221052749,+!p2@HLX!0.61!4.26!HLX;;chr7:14029312..14029325,-!p4@ETV1!0.60!3.90!ETV1;;chr1:158979872..158979898,+!p3@IFI16!0.59!10.29!IFI16;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.93!MSX1;;chr19:13134457..13134462,+!p5@NFIX!0.59!5.68!NFIX;;chr5:92919068..92919082,+!p5@NR2F1!0.59!3.55!NR2F1;;chr2:66662510..66662521,+!p6@MEIS1!0.58!2.84!MEIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.58!2.84!PRRX1;;chr11:32457103..32457123,-!p3@WT1!0.58!2.84!WT1;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr10:31608127..31608156,+!p1@ZEB1!0.57!61.73!ZEB1;;chr12:26277817..26277863,-!p2@BHLHE41!0.57!3.90!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.57!3.19!BNC1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:96874145..96874166,+!p7@NR2F2!0.56!5.68!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.55!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!0.56!3.55!AEBP1;;chr12:57914286..57914304,-!p1@DDIT3!0.55!117.78!DDIT3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.55!6.39!SOHLH2;;chr5:92918956..92918969,+!p4@NR2F1!0.55!2.84!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.90!HMGA2;;chr10:119302645..119302712,+!p3@EMX2!0.54!2.48!EMX2;;chr11:32456954..32456965,-!p4@WT1!0.54!2.48!WT1;;chr12:115122262..115122271,-!p7@TBX3!0.54!2.48!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.54!2.48!TBX3;;chr7:27192185..27192209,-!p1@HOXA3!0.54!2.48!HOXA3;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.48!ZNF668;;chr16:51185318..51185348,-!p2@SALL1!0.54!2.48!SALL1;;chr1:170632310..170632321,+!p15@PRRX1!0.54!2.48!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.90!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.84!PPARG;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.76!DRAP1;;chr19:20188776..20188826,+!p1@ZNF90!0.52!7.45!ZNF90;;chr18:52989031..52989079,-!p2@TCF4!0.52!6.39!TCF4;;chr1:158985493..158985535,+!p4@IFI16!0.52!3.90!IFI16;;chr11:65687882..65687902,+!p10@DRAP1!0.52!3.55!DRAP1;;chr1:164528445..164528459,+!p2@PBX1!0.51!8.51!PBX1;;chr12:115122005..115122016,-!p3@TBX3!0.51!2.84!TBX3;;chr17:47492252..47492265,-!p2@PHB!0.50!11.35!PHB;;chr12:53614155..53614187,-!p3@RARG!0.50!4.97!RARG;;chr12:115121587..115121597,-!p10@TBX3!0.50!2.13!TBX3;;chr16:86612046..86612065,+!p3@FOXL1!0.50!2.13!FOXL1;;chr7:27196267..27196311,-!p1@HOXA7!0.50!2.13!HOXA7;;chr7:27239740..27239759,-!p2@HOXA13!0.50!2.13!HOXA13;;chr8:55370487..55370503,+!p1@SOX17!0.50!2.13!SOX17;;chr2:176969179..176969226,+!p2@HOXD11!0.50!2.13!HOXD11;;chr2:185463158..185463181,+!p2@ZNF804A!0.50!2.13!ZNF804A;;chr3:138665774..138665786,-!p5@FOXL2!0.50!2.13!FOXL2;;chr3:25469815..25469866,+!p3@RARB!0.50!2.13!RARB;;chr3:25470062..25470084,+!p4@RARB!0.50!2.13!RARB;;chr4:26323764..26323821,+!p15@RBPJ!0.50!2.13!RBPJ;;chr16:8962202..8962222,-!p3@CARHSP1!0.49!4.26!CARHSP1;;chr6:42419290..42419314,-!p5@TRERF1!0.49!2.84!TRERF1;;chr7:14028743..14028799,-!p3@ETV1!0.49!2.84!ETV1;;chr20:55204351..55204377,+!p1@TFAP2C!0.49!2.84!TFAP2C;;chr8:72756637..72756664,-!p3@MSC!0.49!2.48!MSC;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.35!ZBTB20;;chr5:321810..321877,+!p1@AHRR!0.48!8.16!AHRR;;chr1:164528616..164528660,+!p5@PBX1!0.48!4.97!PBX1;;chr12:66218183..66218209,+!p4@HMGA2!0.48!4.61!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.48!4.26!HLX;;chr10:35484804..35484902,+!p2@CREM!0.47!9.58!CREM;;chr3:12329358..12329393,+!p3@PPARG!0.47!6.03!PPARG;;chr1:221052840..221052875,+!p4@HLX!0.47!2.48!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.47!2.13!SHOX2;;chr10:63853436..63853442,+!p4@ARID5B!0.46!13.48!ARID5B;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.46!11.35!TAL1;;chr10:63809134..63809145,+!p6@ARID5B!0.46!5.32!ARID5B;;chr3:12329397..12329433,+!p2@PPARG!0.46!5.32!PPARG;;chr20:32274150..32274166,-!p2@E2F1!0.46!4.26!E2F1;;chr19:47922750..47922795,-!p1@MEIS3!0.46!3.55!MEIS3;;chr1:8926369..8926385,-!p12@ENO1!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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.56!40.09!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.51!31.57!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.48!48.60!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.45!777.28!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.37!27.67!FOXF1;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.96!DRAP1;;chr1:170633348..170633399,+!p2@PRRX1!1.34!28.03!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.16!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.38!ZBED1;;chr3:141150883..141150961,+!p6@ZBTB38!1.24!16.32!ZBTB38;;chr9:77112244..77112262,+!p1@RORB!1.23!18.09!RORB;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.50!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.21!48.96!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.70!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.16!13.48!TBX3;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.76!DRAP1;;chr3:25470156..25470227,+!p2@RARB!1.13!12.42!RARB;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.37!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.71!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.35!HOXA11;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.74!HIC1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.41!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!1.03!12.42!DRAP1;;chr17:38256799..38256815,-!p3@NR1D1!0.99!16.32!NR1D1;;chr15:96873984..96873999,+!p3@NR2F2!0.98!63.86!NR2F2;;chr2:66662281..66662308,+!p1@MEIS1!0.98!30.15!MEIS1;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.77!NFIX;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.51!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.97!32.99!FOSL1;;chr14:24837368..24837401,+!p1@NFATC4!0.97!20.22!NFATC4;;chr11:32457075..32457095,-!p1@WT1!0.96!8.16!WT1;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.90!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.22!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.94!66.70!TBX3;;chr11:65687158..65687216,+!p4@DRAP1!0.93!45.05!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.93!7.45!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.92!29.09!MEIS1;;chr12:66218255..66218304,+!p3@HMGA2!0.92!20.58!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.92!12.77!TBX2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.42!TWIST2;;chr11:65667846..65667868,-!p1@FOSL1!0.90!192.99!FOSL1;;chr17:38256822..38256851,-!p1@NR1D1!0.88!54.63!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.87!TBX2;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.39!FOXL2;;chr7:27224795..27224840,-!p2@HOXA11!0.87!6.39!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!0.85!8.16!PRDM8;;chr15:57511589..57511608,+!p4@TCF12!0.85!6.03!TCF12;;chr1:170632250..170632277,+!p7@PRRX1!0.85!6.03!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.03!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.35!BHLHE41;;chr1:158979792..158979814,+!p2@IFI16!0.83!59.60!IFI16;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.90!FOXC2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.68!SMAD3;;chr7:27239703..27239715,-!p1@HOXA13!0.82!5.68!HOXA13;;chr12:115121770..115121781,-!p4@TBX3!0.82!5.68!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.82!5.68!ALX1;;chr14:33403881..33403924,+!p1@NPAS3!0.80!5.32!NPAS3;;chr6:34204672..34204692,+!p1@HMGA1!0.79!634.67!HMGA1;;chr3:25469724..25469773,+!p1@RARB!0.79!7.80!RARB;;chr7:14029283..14029311,-!p1@ETV1!0.78!29.09!ETV1;;chr11:65687243..65687276,+!p8@DRAP1!0.78!7.10!DRAP1;;chr3:128212033..128212051,-!p1@GATA2!0.78!4.97!GATA2;;chr17:1958388..1958404,+!p1@HIC1!0.77!34.41!HIC1;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.22!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.16!CREB3L1;;chr16:86612320..86612394,+!p1@FOXL1!0.75!4.61!FOXL1;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.75!4.61!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.75!AEBP1;;chr2:19558373..19558392,-!p1@OSR1!0.73!13.13!OSR1;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.93!SOX15;;chr3:141121847..141121868,+!p5@ZBTB38!0.72!6.74!ZBTB38;;chr19:45260775..45260838,+!p5@BCL3!0.72!5.68!BCL3;;chr10:119303078..119303169,+!p2@EMX2!0.72!4.26!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.72!4.26!RFX8;;chr3:141151009..141151033,+!p10@ZBTB38!0.72!4.26!ZBTB38;;chr2:66662895..66662907,+!p3@MEIS1!0.71!5.32!MEIS1;;chr4:26322267..26322334,+!p3@RBPJ!0.70!10.64!RBPJ;;chr10:63809106..63809127,+!p1@ARID5B!0.69!60.31!ARID5B;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.60!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.69!41.51!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.90!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.69!3.90!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.68!39.02!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.68!23.77!DRAP1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.68!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.97!SOX5;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.61!DRAP1;;chr1:151032860..151032918,+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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000995;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11466-119B8 | |id=FF:11466-119B8 | ||
|is_a=EFO:0002091;;FF:0000185 | |is_a=EFO:0002091;;FF:0000185 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11927 | |||
|library_id_phase_based=2:CNhs11927 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11466 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GGCTAC.11466 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11466 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GGCTAC.11466 | |||
|name=Smooth Muscle Cells - Uterine, donor3 | |name=Smooth Muscle Cells - Uterine, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11927,LSID835,release010,COMPLETED | |profile_hcage=CNhs11927,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 82: | ||
|rna_tube_id=119B8 | |rna_tube_id=119B8 | ||
|rna_weight_ug=5.6 | |rna_weight_ug=5.6 | ||
|rnaseq_library_id=SRhi10002.GGCTAC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=C-14059 | |sample_cell_catalog=C-14059 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547 | |top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11466-119B8;search_select_hide=table117:FF:11466-119B8 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Smooth Muscle Cells - Uterine, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11927 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11927
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11927
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.486 |
| 10 | 10 | 0.139 |
| 100 | 100 | 0.698 |
| 101 | 101 | 0.681 |
| 102 | 102 | 0.902 |
| 103 | 103 | 0.51 |
| 104 | 104 | 0.627 |
| 105 | 105 | 0.356 |
| 106 | 106 | 0.999 |
| 107 | 107 | 0.156 |
| 108 | 108 | 0.211 |
| 109 | 109 | 0.0612 |
| 11 | 11 | 0.156 |
| 110 | 110 | 9.92908e-4 |
| 111 | 111 | 0.197 |
| 112 | 112 | 0.742 |
| 113 | 113 | 0.00287 |
| 114 | 114 | 0.483 |
| 115 | 115 | 0.914 |
| 116 | 116 | 0.277 |
| 117 | 117 | 0.0167 |
| 118 | 118 | 0.582 |
| 119 | 119 | 0.988 |
| 12 | 12 | 0.949 |
| 120 | 120 | 0.116 |
| 121 | 121 | 0.951 |
| 122 | 122 | 0.432 |
| 123 | 123 | 1.13479e-4 |
| 124 | 124 | 0.893 |
| 125 | 125 | 0.53 |
| 126 | 126 | 0.452 |
| 127 | 127 | 0.678 |
| 128 | 128 | 0.761 |
| 129 | 129 | 0.963 |
| 13 | 13 | 0.178 |
| 130 | 130 | 0.00823 |
| 131 | 131 | 0.902 |
| 132 | 132 | 0.748 |
| 133 | 133 | 0.336 |
| 134 | 134 | 0.439 |
| 135 | 135 | 0.72 |
| 136 | 136 | 0.838 |
| 137 | 137 | 0.464 |
| 138 | 138 | 0.137 |
| 139 | 139 | 0.00618 |
| 14 | 14 | 0.222 |
| 140 | 140 | 0.114 |
| 141 | 141 | 0.37 |
| 142 | 142 | 0.356 |
| 143 | 143 | 0.969 |
| 144 | 144 | 0.418 |
| 145 | 145 | 0.523 |
| 146 | 146 | 0.397 |
| 147 | 147 | 0.115 |
| 148 | 148 | 0.875 |
| 149 | 149 | 0.425 |
| 15 | 15 | 0.679 |
| 150 | 150 | 0.448 |
| 151 | 151 | 0.569 |
| 152 | 152 | 0.495 |
| 153 | 153 | 0.242 |
| 154 | 154 | 0.214 |
| 155 | 155 | 0.00326 |
| 156 | 156 | 0.857 |
| 157 | 157 | 0.41 |
| 158 | 158 | 0.00134 |
| 159 | 159 | 0.0379 |
| 16 | 16 | 0.083 |
| 160 | 160 | 0.257 |
| 161 | 161 | 0.518 |
| 162 | 162 | 0.813 |
| 163 | 163 | 0.82 |
| 164 | 164 | 0.977 |
| 165 | 165 | 0.773 |
| 166 | 166 | 0.409 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.979 |
| 169 | 169 | 0.0821 |
| 17 | 17 | 0.935 |
| 18 | 18 | 0.142 |
| 19 | 19 | 0.0876 |
| 2 | 2 | 0.555 |
| 20 | 20 | 0.612 |
| 21 | 21 | 0.596 |
| 22 | 22 | 0.122 |
| 23 | 23 | 0.407 |
| 24 | 24 | 0.113 |
| 25 | 25 | 0.221 |
| 26 | 26 | 0.276 |
| 27 | 27 | 0.438 |
| 28 | 28 | 0.205 |
| 29 | 29 | 0.169 |
| 3 | 3 | 0.38 |
| 30 | 30 | 0.278 |
| 31 | 31 | 0.711 |
| 32 | 32 | 0.349 |
| 33 | 33 | 0.326 |
| 34 | 34 | 0.49 |
| 35 | 35 | 0.86 |
| 36 | 36 | 0.378 |
| 37 | 37 | 0.0948 |
| 38 | 38 | 0.675 |
| 39 | 39 | 0.244 |
| 4 | 4 | 0.394 |
| 40 | 40 | 0.813 |
| 41 | 41 | 0.12 |
| 42 | 42 | 0.47 |
| 43 | 43 | 0.547 |
| 44 | 44 | 0.937 |
| 45 | 45 | 0.546 |
| 46 | 46 | 0.36 |
| 47 | 47 | 0.755 |
| 48 | 48 | 0.293 |
| 49 | 49 | 0.523 |
| 5 | 5 | 0.596 |
| 50 | 50 | 0.598 |
| 51 | 51 | 0.376 |
| 52 | 52 | 0.44 |
| 53 | 53 | 0.0268 |
| 54 | 54 | 0.912 |
| 55 | 55 | 0.897 |
| 56 | 56 | 0.704 |
| 57 | 57 | 0.473 |
| 58 | 58 | 0.533 |
| 59 | 59 | 0.399 |
| 6 | 6 | 0.302 |
| 60 | 60 | 0.618 |
| 61 | 61 | 0.957 |
| 62 | 62 | 0.873 |
| 63 | 63 | 0.968 |
| 64 | 64 | 0.539 |
| 65 | 65 | 0.578 |
| 66 | 66 | 0.0927 |
| 67 | 67 | 0.599 |
| 68 | 68 | 0.277 |
| 69 | 69 | 0.471 |
| 7 | 7 | 0.356 |
| 70 | 70 | 0.476 |
| 71 | 71 | 0.0735 |
| 72 | 72 | 0.917 |
| 73 | 73 | 0.218 |
| 74 | 74 | 0.473 |
| 75 | 75 | 0.151 |
| 76 | 76 | 0.232 |
| 77 | 77 | 0.153 |
| 78 | 78 | 0.167 |
| 79 | 79 | 0.743 |
| 8 | 8 | 0.408 |
| 80 | 80 | 0.415 |
| 81 | 81 | 0.766 |
| 82 | 82 | 0.405 |
| 83 | 83 | 0.295 |
| 84 | 84 | 0.754 |
| 85 | 85 | 0.145 |
| 86 | 86 | 0.54 |
| 87 | 87 | 0.0102 |
| 88 | 88 | 0.301 |
| 89 | 89 | 0.169 |
| 9 | 9 | 0.184 |
| 90 | 90 | 0.745 |
| 91 | 91 | 0.119 |
| 92 | 92 | 0.43 |
| 93 | 93 | 0.732 |
| 94 | 94 | 0.79 |
| 95 | 95 | 0.201 |
| 96 | 96 | 0.644 |
| 97 | 97 | 0.417 |
| 98 | 98 | 0.555 |
| 99 | 99 | 0.0164 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11927
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000185 human uterine smooth muscle cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002601 (uterine smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000185 (human uterine smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
