FF:11491-119E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005782 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005782 | |||
|accession_numbers=CAGE;DRX008396;DRR009268;DRZ000693;DRZ002078;DRZ012043;DRZ013428 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037003;DRR041369;DRZ007011 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr13:100634031..100634045,+!p1@ZIC2!2.39!246.51!ZIC2;;chr3:147127142..147127168,+!p1@ZIC1!2.18!150.57!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!2.15!140.19!ZIC1;;chr2:19558373..19558392,-!p1@OSR1!2.02!272.95!OSR1;;chr19:46800289..46800327,+!p2@HIF3A!1.98!94.38!HIF3A;;chr5:72744445..72744466,-!p2@FOXD1!1.70!80.67!FOXD1;;chr14:61116183..61116208,-!p1@SIX1!1.69!175.05!SIX1;;chr5:92918919..92918942,+!p1@NR2F1!1.68!199.13!NR2F1;;chr5:72743793..72743855,-!p4@FOXD1!1.67!53.26!FOXD1;;chr13:100634004..100634025,+!p2@ZIC2!1.67!45.82!ZIC2;;chr3:147111231..147111281,+!p3@ZIC1!1.64!42.68!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.63!181.12!FOXD1;;chr6:85474299..85474324,-!p1@TBX18!1.57!63.83!TBX18;;chr2:45236540..45236577,-!p1@SIX2!1.57!35.83!SIX2;;chr12:54772960..54773015,-!p3@ZNF385A!1.56!164.47!ZNF385A;;chr16:86600426..86600441,+!p1@FOXC2!1.53!79.10!FOXC2;;chr17:1959369..1959388,+!p2@HIC1!1.47!73.62!HIC1;;chr13:100634130..100634143,+!p3@ZIC2!1.47!28.39!ZIC2;;chr5:72744336..72744359,-!p5@FOXD1!1.46!27.61!FOXD1;;chr7:19157248..19157268,-!p1@TWIST1!1.43!70.88!TWIST1;;chr5:72744562..72744573,-!p3@FOXD1!1.41!30.74!FOXD1;;chr3:147139053..147139112,+!p5@ZIC1!1.40!24.28!ZIC1;;chr7:44143925..44143970,+!p1@AEBP1!1.39!506.93!AEBP1;;chr20:39317868..39317884,-!p1@MAFB!1.39!269.42!MAFB;;chr15:96874145..96874166,+!p7@NR2F2!1.39!45.03!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!1.38!70.29!TBX2;;chr13:100638100..100638115,+!p4@ZIC2!1.35!21.34!ZIC2;;chr19:46801639..46801699,+!p1@HIF3A!1.32!19.97!HIF3A;;chr12:54785054..54785072,-!p4@ZNF385A!1.31!22.13!ZNF385A;;chr2:45236579..45236596,-!p2@SIX2!1.31!19.19!SIX2;;chr15:96874012..96874042,+!p2@NR2F2!1.30!166.24!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!1.30!134.52!NR2F2;;chr11:61520075..61520136,+!p1@C11orf9!1.29!38.96!C11orf9;;chr7:19157043..19157088,-!p2@TWIST1!1.26!42.49!TWIST1;;chr6:1610293..1610310,+!p1@FOXC1!1.26!28.59!FOXC1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.26!18.21!GLIS1;;chr2:85981222..85981259,+!p2@ATOH8!1.25!27.41!ATOH8;;chr6:1389789..1389821,+!p1@FOXF2!1.25!22.91!FOXF2;;chr19:46806868..46806883,+!p3@HIF3A!1.24!16.45!HIF3A;;chr16:86600870..86600921,+!p2@FOXC2!1.24!16.25!FOXC2;;chr8:49833948..49833973,-!p2@SNAI2!1.23!100.05!SNAI2;;chr7:150946015..150946070,-!p3@SMARCD3!1.23!34.27!SMARCD3;;chr6:126070769..126070801,+!p1@HEY2!1.23!18.60!HEY2;;chr12:54778471..54778528,-!p1@ZNF385A!1.22!15.66!ZNF385A;;chr3:147124307..147124336,-!p2@ZIC4!1.19!14.49!ZIC4;;chr2:85981107..85981120,+!p3@ATOH8!1.17!13.71!ATOH8;;chr17:1958388..1958404,+!p1@HIC1!1.15!82.43!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!68.14!CREB3L1;;chr14:21994337..21994442,-!p1@SALL2!1.15!36.22!SALL2;;chr15:96874927..96874938,+!p8@NR2F2!1.13!26.82!NR2F2;;chr3:147114260..147114290,-!p3@ZIC4!1.13!12.53!ZIC4;;chr3:147127489..147127503,+!p11@ZIC1!1.13!12.34!ZIC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.99!ZNF385A;;chr21:47063625..47063658,+!p1@PCBP3!1.11!51.50!PCBP3;;chr15:96874244..96874259,+!p5@NR2F2!1.11!28.78!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!1.11!21.93!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!1.10!25.45!GLI2;;chr19:45260775..45260838,+!p5@BCL3!1.09!14.88!BCL3;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.36!TCF21;;chr16:79633894..79633954,-!p3@MAF!1.08!21.15!MAF;;chr3:147123837..147123848,-!p7@ZIC4!1.08!11.16!ZIC4;;chr3:147111317..147111328,+!p8@ZIC1!1.07!10.77!ZIC1;;chr12:57522813..57522825,-!p10@STAT6!1.07!10.77!STAT6;;chr17:59477197..59477212,+!p2@TBX2!1.06!18.21!TBX2;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.94!MSX1;;chr14:61116168..61116180,-!p2@SIX1!1.04!11.36!SIX1;;chr16:79634624..79634642,-!p1@MAF!1.03!38.38!MAF;;chr15:80696703..80696754,+!p1@ARNT2!1.03!13.12!ARNT2;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.55!NR2F1;;chr5:92918894..92918912,+!p2@NR2F1!1.01!30.54!NR2F1;;chr12:66218183..66218209,+!p4@HMGA2!1.01!18.21!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!1.01!11.75!AEBP1;;chr11:47279248..47279264,+!p3@NR1H3!1.00!10.18!NR1H3;;chr15:80843484..80843499,+!p5@ARNT2!1.00!9.01!ARNT2;;chr16:8962202..8962222,-!p3@CARHSP1!0.99!15.66!CARHSP1;;chr13:100623375..100623425,-!p1@ZIC5!0.99!8.81!ZIC5;;chr8:48650715..48650735,-!p1@CEBPD!0.98!1117.24!CEBPD;;chr15:96873921..96873946,+!p1@NR2F2!0.98!245.53!NR2F2;;chr5:158526917..158526932,-!p1@EBF1!0.98!21.54!EBF1;;chr15:96874216..96874236,+!p13@NR2F2!0.98!13.51!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.57!FOXF1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.38!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!171.33!SNAI2;;chr17:46671108..46671147,-!p1@HOXB5!0.96!8.03!HOXB5;;chr22:42229246..42229270,+!p2@SREBF2!0.95!103.38!SREBF2;;chr12:57504975..57505019,-!p2@STAT6!0.95!32.89!STAT6;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.83!ZIC1;;chr3:147111285..147111298,+!p10@ZIC1!0.94!7.64!ZIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.21!NFATC4;;chr17:59477275..59477286,+!p3@TBX2!0.93!10.18!TBX2;;chr16:86600458..86600461,+!p3@FOXC2!0.93!7.44!FOXC2;;chr11:125034605..125034636,+!p2@PKNOX2!0.93!7.44!PKNOX2;;chrY:21906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AD4!0.36!3.72!TEAD4;;chr1:249132608..249132628,+!p5@ZNF672!0.36!2.94!ZNF672;;chr6:45389835..45389861,+!p7@RUNX2!0.36!2.55!RUNX2;;chr16:30583169..30583200,-!p2@ZNF688!0.36!2.35!ZNF688;;chr14:24025106..24025172,-!p2@ZFHX2!0.36!1.96!ZFHX2;;chr5:124082580..124082603,-!p4@ZNF608!0.36!1.57!ZNF608;;chr16:31128978..31129002,+!p1@KAT8!0.35!97.90!KAT8;;chr17:80477571..80477637,+!p1@FOXK2!0.35!60.70!FOXK2;;chr11:65430402..65430431,-!p2@RELA!0.35!52.28!RELA;;chr16:31085714..31085783,+!p1@ZNF646!0.35!32.89!ZNF646;;chr19:17356697..17356762,-!p1@NR2F6!0.35!27.22!NR2F6;;chr1:161015706..161015747,-!p1@USF1!0.35!23.89!USF1;;chr1:247495140..247495177,-!p1@ZNF496!0.35!21.34!ZNF496;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.57!ZNF500;;chr11:62369352..62369373,-!p5@MTA2!0.35!7.24!MTA2;;chr15:66994663..66994680,+!p1@SMAD6!0.35!4.11!SMAD6;;chr2:46524474..46524491,+!p4@EPAS1!0.35!4.11!EPAS1;;chr20:48807091..48807123,+!p7@CEBPB!0.35!3.72!CEBPB;;chr20:48807171..48807234,+!p4@CEBPB!0.35!3.72!CEBPB;;chr9:116638634..116638664,+!p2@ZNF618!0.35!3.13!ZNF618;;chr14:61191049..61191080,-!p2@SIX4!0.35!2.74!SIX4;;chr19:3572908..3572917,+!p3@HMG20B!0.35!2.74!HMG20B;;chr16:3185051..3185068,+!p3@ZNF213!0.35!2.55!ZNF213;;chr17:41623009..41623053,-!p4@ETV4!0.35!2.55!ETV4;;chr17:61919812..61919833,-!p6@SMARCD2!0.35!1.76!SMARCD2;;chr17:53342311..53342400,+!p1@HLF!0.35!1.57!HLF;;chr14:69259772..69259790,-!p1@ZFP36L1!0.34!201.87!ZFP36L1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.34!112.59!ZC3H7B;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.34!49.15!MEF2B;;chr19:19516561..19516644,+!p1@GATAD2A!0.34!41.71!GATAD2A;;chr14:65569244..65569264,-!p2@MAX!0.34!22.32!MAX;;chr19:55987963..55987996,+!p1@ZNF628!0.34!14.10!ZNF628;;chr1:154975258..154975330,+!p1@ZBTB7B!0.34!6.66!ZBTB7B;;chr19:46272106..46272115,-!p3@SIX5!0.34!4.70!SIX5;;chr9:137218362..137218385,+!p4@RXRA!0.34!4.50!RXRA;;chr17:17723626..17723663,-!p4@SREBF1!0.34!3.33!SREBF1;;chr2:242576946..242576996,-!p4@THAP4!0.34!3.13!THAP4;;chr15:96869222..96869251,+!p18@NR2F2!0.34!1.57!NR2F2;;chr15:96877425..96877441,+!p32@NR2F2!0.34!1.17!NR2F2;;chr16:86612174..86612188,+!p4@FOXL1!0.34!1.17!FOXL1;;chr17:59477266..59477273,+!p6@TBX2!0.34!1.17!TBX2;;chr18:42260920..42260951,+!p4@SETBP1!0.34!1.17!SETBP1;;chr2:45236648..45236659,-!p5@SIX2!0.34!1.17!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.34!1.17!RARB;;chr3:25470156..25470227,+!p2@RARB!0.34!1.17!RARB;;chr4:109089901..109089930,-!p3@LEF1!0.34!1.17!LEF1;;chr4:174451370..174451387,-!p1@HAND2!0.34!1.17!HAND2;;chr4:57522674..57522699,-!p5@HOPX!0.34!1.17!HOPX;;chr9:16728161..16728185,-!p4@BNC2!0.34!1.17!BNC2;;chrX:136648643..136648711,+!p2@ZIC3!0.34!1.17!ZIC3;;chr5:92920719..92920744,+!p17@NR2F1,p31@NR2F2!0.34!1.17!NR2F1;;chr7:150945865..150945896,-!p4@SMARCD3!0.34!1.17!SMARCD3;;chr8:128750164..128750173,+!p24@MYC!0.34!1.17!MYC;;chr19:47910182..47910187,-!p3@MEIS3!0.34!1.17!MEIS3;;chr19:58545454..58545498,+!p1@ZSCAN1!0.34!1.17!ZSCAN1;;chr1:110613238..110613272,-!p1@ALX3!0.34!1.17!ALX3;;chr11:46333883..46333900,+!p8@CREB3L1!0.34!1.17!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!0.34!1.17!CREB3L1;;chr12:114845810..114845824,-!p1@TBX5!0.34!1.17!TBX5;;chr12:124873824..124873833,-!p19@NCOR2!0.34!1.17!NCOR2;;chr12:57853596..57853613,+!p3@GLI1!0.34!1.17!GLI1;;chr12:85674018..85674039,+!p3@ALX1!0.34!1.17!ALX1;;chr13:100623360..100623373,-!p2@ZIC5!0.34!1.17!ZIC5;;chr14:61190359..61190385,-!p4@SIX4!0.34!1.17!SIX4;;chr1:26496382..26496457,+!p1@ZNF593!0.33!116.89!ZNF593;;chr8:103667935..103667960,-!p1@KLF10!0.33!86.94!KLF10;;chr19:3366570..3366619,+!p1@NFIC!0.33!61.68!NFIC;;chr14:21945335..21945419,+!p1@TOX4!0.33!49.93!TOX4;;chr12:57916584..57916682,+!p1@MBD6!0.33!38.38!MBD6;;chr6:35464817..35464894,-!p1@TEAD3!0.33!29.37!TEAD3;;chr6:144329384..144329405,-!p1@PLAGL1!0.33!21.93!PLAGL1;;chr19:42724436..42724507,+!p1@ZNF526!0.33!15.47!ZNF526;;chr8:144329092..144329140,+!p1@ZFP41!0.33!13.31!ZFP41;;chr15:85144229..85144273,+!p1@ZSCAN2!0.33!9.79!ZSCAN2;;chr16:71918033..71918101,-!p1@ZNF821!0.33!6.46!ZNF821;;chr15:67357992..67358009,+!p3@SMAD3!0.33!3.92!SMAD3;;chr11:64073006..64073017,+!p3@ESRRA!0.33!3.72!ESRRA;;chr1:8483821..8483845,-!p11@RERE!0.33!3.13!RERE;;chr15:42749722..42749739,-!p2@ZFP106!0.33!2.74!ZFP106;;chr19:44037334..44037365,+!p2@ZNF575!0.33!2.15!ZNF575;;chr7:6655225..6655279,+!p1@ENST00000457543!0.33!2.15!ZNF853;;chr19:12175504..12175519,+!p2@ZNF844!0.33!1.96!ZNF844;;chr4:103422232..103422241,+!p6@NFKB1!0.33!1.57!NFKB1;;chr1:8938736..8938756,-!p1@ENO1!0.32!2081.37!ENO1;;chr17:46125707..46125746,+!p2@NFE2L1!0.32!99.66!NFE2L1;;chr12:132628963..132629027,+!p1@NOC4L!0.32!27.41!NOC4L;;chr19:20844368..20844407,-!p1@ZNF626!0.32!26.04!ZNF626;;chr19:36208877..36208919,+!p1@MLL4!0.32!23.69!MLL4;;chr16:3162557..3162600,+!p1@ZNF205!0.32!15.47!ZNF205;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.32!14.10!ZNF319;;chr16:4322832..4322907,-!p1@TFAP4!0.32!13.90!TFAP4;;chr2:10183651..10183713,+!p1@KLF11!0.32!13.31!KLF11;;chr11:65686952..65686975,+!p5@DRAP1!0.32!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| |expression_enrichment_score=chr13:100634031..100634045,+!p1@ZIC2!2.39!246.51!ZIC2;;chr3:147127142..147127168,+!p1@ZIC1!2.18!150.57!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!2.15!140.19!ZIC1;;chr2:19558373..19558392,-!p1@OSR1!2.02!272.95!OSR1;;chr19:46800289..46800327,+!p2@HIF3A!1.98!94.38!HIF3A;;chr5:72744445..72744466,-!p2@FOXD1!1.70!80.67!FOXD1;;chr14:61116183..61116208,-!p1@SIX1!1.69!175.05!SIX1;;chr5:92918919..92918942,+!p1@NR2F1!1.68!199.13!NR2F1;;chr5:72743793..72743855,-!p4@FOXD1!1.67!53.26!FOXD1;;chr13:100634004..100634025,+!p2@ZIC2!1.67!45.82!ZIC2;;chr3:147111231..147111281,+!p3@ZIC1!1.64!42.68!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.63!181.12!FOXD1;;chr6:85474299..85474324,-!p1@TBX18!1.57!63.83!TBX18;;chr2:45236540..45236577,-!p1@SIX2!1.57!35.83!SIX2;;chr12:54772960..54773015,-!p3@ZNF385A!1.56!164.47!ZNF385A;;chr16:86600426..86600441,+!p1@FOXC2!1.53!79.10!FOXC2;;chr17:1959369..1959388,+!p2@HIC1!1.47!73.62!HIC1;;chr13:100634130..100634143,+!p3@ZIC2!1.47!28.39!ZIC2;;chr5:72744336..72744359,-!p5@FOXD1!1.46!27.61!FOXD1;;chr7:19157248..19157268,-!p1@TWIST1!1.43!70.88!TWIST1;;chr5:72744562..72744573,-!p3@FOXD1!1.41!30.74!FOXD1;;chr3:147139053..147139112,+!p5@ZIC1!1.40!24.28!ZIC1;;chr7:44143925..44143970,+!p1@AEBP1!1.39!506.93!AEBP1;;chr20:39317868..39317884,-!p1@MAFB!1.39!269.42!MAFB;;chr15:96874145..96874166,+!p7@NR2F2!1.39!45.03!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!1.38!70.29!TBX2;;chr13:100638100..100638115,+!p4@ZIC2!1.35!21.34!ZIC2;;chr19:46801639..46801699,+!p1@HIF3A!1.32!19.97!HIF3A;;chr12:54785054..54785072,-!p4@ZNF385A!1.31!22.13!ZNF385A;;chr2:45236579..45236596,-!p2@SIX2!1.31!19.19!SIX2;;chr15:96874012..96874042,+!p2@NR2F2!1.30!166.24!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!1.30!134.52!NR2F2;;chr11:61520075..61520136,+!p1@C11orf9!1.29!38.96!C11orf9;;chr7:19157043..19157088,-!p2@TWIST1!1.26!42.49!TWIST1;;chr6:1610293..1610310,+!p1@FOXC1!1.26!28.59!FOXC1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.26!18.21!GLIS1;;chr2:85981222..85981259,+!p2@ATOH8!1.25!27.41!ATOH8;;chr6:1389789..1389821,+!p1@FOXF2!1.25!22.91!FOXF2;;chr19:46806868..46806883,+!p3@HIF3A!1.24!16.45!HIF3A;;chr16:86600870..86600921,+!p2@FOXC2!1.24!16.25!FOXC2;;chr8:49833948..49833973,-!p2@SNAI2!1.23!100.05!SNAI2;;chr7:150946015..150946070,-!p3@SMARCD3!1.23!34.27!SMARCD3;;chr6:126070769..126070801,+!p1@HEY2!1.23!18.60!HEY2;;chr12:54778471..54778528,-!p1@ZNF385A!1.22!15.66!ZNF385A;;chr3:147124307..147124336,-!p2@ZIC4!1.19!14.49!ZIC4;;chr2:85981107..85981120,+!p3@ATOH8!1.17!13.71!ATOH8;;chr17:1958388..1958404,+!p1@HIC1!1.15!82.43!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!68.14!CREB3L1;;chr14:21994337..21994442,-!p1@SALL2!1.15!36.22!SALL2;;chr15:96874927..96874938,+!p8@NR2F2!1.13!26.82!NR2F2;;chr3:147114260..147114290,-!p3@ZIC4!1.13!12.53!ZIC4;;chr3:147127489..147127503,+!p11@ZIC1!1.13!12.34!ZIC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.99!ZNF385A;;chr21:47063625..47063658,+!p1@PCBP3!1.11!51.50!PCBP3;;chr15:96874244..96874259,+!p5@NR2F2!1.11!28.78!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!1.11!21.93!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!1.10!25.45!GLI2;;chr19:45260775..45260838,+!p5@BCL3!1.09!14.88!BCL3;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.36!TCF21;;chr16:79633894..79633954,-!p3@MAF!1.08!21.15!MAF;;chr3:147123837..147123848,-!p7@ZIC4!1.08!11.16!ZIC4;;chr3:147111317..147111328,+!p8@ZIC1!1.07!10.77!ZIC1;;chr12:57522813..57522825,-!p10@STAT6!1.07!10.77!STAT6;;chr17:59477197..59477212,+!p2@TBX2!1.06!18.21!TBX2;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.94!MSX1;;chr14:61116168..61116180,-!p2@SIX1!1.04!11.36!SIX1;;chr16:79634624..79634642,-!p1@MAF!1.03!38.38!MAF;;chr15:80696703..80696754,+!p1@ARNT2!1.03!13.12!ARNT2;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.55!NR2F1;;chr5:92918894..92918912,+!p2@NR2F1!1.01!30.54!NR2F1;;chr12:66218183..66218209,+!p4@HMGA2!1.01!18.21!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!1.01!11.75!AEBP1;;chr11:47279248..47279264,+!p3@NR1H3!1.00!10.18!NR1H3;;chr15:80843484..80843499,+!p5@ARNT2!1.00!9.01!ARNT2;;chr16:8962202..8962222,-!p3@CARHSP1!0.99!15.66!CARHSP1;;chr13:100623375..100623425,-!p1@ZIC5!0.99!8.81!ZIC5;;chr8:48650715..48650735,-!p1@CEBPD!0.98!1117.24!CEBPD;;chr15:96873921..96873946,+!p1@NR2F2!0.98!245.53!NR2F2;;chr5:158526917..158526932,-!p1@EBF1!0.98!21.54!EBF1;;chr15:96874216..96874236,+!p13@NR2F2!0.98!13.51!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.57!FOXF1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.38!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!171.33!SNAI2;;chr17:46671108..46671147,-!p1@HOXB5!0.96!8.03!HOXB5;;chr22:42229246..42229270,+!p2@SREBF2!0.95!103.38!SREBF2;;chr12:57504975..57505019,-!p2@STAT6!0.95!32.89!STAT6;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.83!ZIC1;;chr3:147111285..147111298,+!p10@ZIC1!0.94!7.64!ZIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.21!NFATC4;;chr17:59477275..59477286,+!p3@TBX2!0.93!10.18!TBX2;;chr16:86600458..86600461,+!p3@FOXC2!0.93!7.44!FOXC2;;chr11:125034605..125034636,+!p2@PKNOX2!0.93!7.44!PKNOX2;;chrY:21906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AD4!0.36!3.72!TEAD4;;chr1:249132608..249132628,+!p5@ZNF672!0.36!2.94!ZNF672;;chr6:45389835..45389861,+!p7@RUNX2!0.36!2.55!RUNX2;;chr16:30583169..30583200,-!p2@ZNF688!0.36!2.35!ZNF688;;chr14:24025106..24025172,-!p2@ZFHX2!0.36!1.96!ZFHX2;;chr5:124082580..124082603,-!p4@ZNF608!0.36!1.57!ZNF608;;chr16:31128978..31129002,+!p1@KAT8!0.35!97.90!KAT8;;chr17:80477571..80477637,+!p1@FOXK2!0.35!60.70!FOXK2;;chr11:65430402..65430431,-!p2@RELA!0.35!52.28!RELA;;chr16:31085714..31085783,+!p1@ZNF646!0.35!32.89!ZNF646;;chr19:17356697..17356762,-!p1@NR2F6!0.35!27.22!NR2F6;;chr1:161015706..161015747,-!p1@USF1!0.35!23.89!USF1;;chr1:247495140..247495177,-!p1@ZNF496!0.35!21.34!ZNF496;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.57!ZNF500;;chr11:62369352..62369373,-!p5@MTA2!0.35!7.24!MTA2;;chr15:66994663..66994680,+!p1@SMAD6!0.35!4.11!SMAD6;;chr2:46524474..46524491,+!p4@EPAS1!0.35!4.11!EPAS1;;chr20:48807091..48807123,+!p7@CEBPB!0.35!3.72!CEBPB;;chr20:48807171..48807234,+!p4@CEBPB!0.35!3.72!CEBPB;;chr9:116638634..116638664,+!p2@ZNF618!0.35!3.13!ZNF618;;chr14:61191049..61191080,-!p2@SIX4!0.35!2.74!SIX4;;chr19:3572908..3572917,+!p3@HMG20B!0.35!2.74!HMG20B;;chr16:3185051..3185068,+!p3@ZNF213!0.35!2.55!ZNF213;;chr17:41623009..41623053,-!p4@ETV4!0.35!2.55!ETV4;;chr17:61919812..61919833,-!p6@SMARCD2!0.35!1.76!SMARCD2;;chr17:53342311..53342400,+!p1@HLF!0.35!1.57!HLF;;chr14:69259772..69259790,-!p1@ZFP36L1!0.34!201.87!ZFP36L1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.34!112.59!ZC3H7B;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.34!49.15!MEF2B;;chr19:19516561..19516644,+!p1@GATAD2A!0.34!41.71!GATAD2A;;chr14:65569244..65569264,-!p2@MAX!0.34!22.32!MAX;;chr19:55987963..55987996,+!p1@ZNF628!0.34!14.10!ZNF628;;chr1:154975258..154975330,+!p1@ZBTB7B!0.34!6.66!ZBTB7B;;chr19:46272106..46272115,-!p3@SIX5!0.34!4.70!SIX5;;chr9:137218362..137218385,+!p4@RXRA!0.34!4.50!RXRA;;chr17:17723626..17723663,-!p4@SREBF1!0.34!3.33!SREBF1;;chr2:242576946..242576996,-!p4@THAP4!0.34!3.13!THAP4;;chr15:96869222..96869251,+!p18@NR2F2!0.34!1.57!NR2F2;;chr15:96877425..96877441,+!p32@NR2F2!0.34!1.17!NR2F2;;chr16:86612174..86612188,+!p4@FOXL1!0.34!1.17!FOXL1;;chr17:59477266..59477273,+!p6@TBX2!0.34!1.17!TBX2;;chr18:42260920..42260951,+!p4@SETBP1!0.34!1.17!SETBP1;;chr2:45236648..45236659,-!p5@SIX2!0.34!1.17!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.34!1.17!RARB;;chr3:25470156..25470227,+!p2@RARB!0.34!1.17!RARB;;chr4:109089901..109089930,-!p3@LEF1!0.34!1.17!LEF1;;chr4:174451370..174451387,-!p1@HAND2!0.34!1.17!HAND2;;chr4:57522674..57522699,-!p5@HOPX!0.34!1.17!HOPX;;chr9:16728161..16728185,-!p4@BNC2!0.34!1.17!BNC2;;chrX:136648643..136648711,+!p2@ZIC3!0.34!1.17!ZIC3;;chr5:92920719..92920744,+!p17@NR2F1,p31@NR2F2!0.34!1.17!NR2F1;;chr7:150945865..150945896,-!p4@SMARCD3!0.34!1.17!SMARCD3;;chr8:128750164..128750173,+!p24@MYC!0.34!1.17!MYC;;chr19:47910182..47910187,-!p3@MEIS3!0.34!1.17!MEIS3;;chr19:58545454..58545498,+!p1@ZSCAN1!0.34!1.17!ZSCAN1;;chr1:110613238..110613272,-!p1@ALX3!0.34!1.17!ALX3;;chr11:46333883..46333900,+!p8@CREB3L1!0.34!1.17!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!0.34!1.17!CREB3L1;;chr12:114845810..114845824,-!p1@TBX5!0.34!1.17!TBX5;;chr12:124873824..124873833,-!p19@NCOR2!0.34!1.17!NCOR2;;chr12:57853596..57853613,+!p3@GLI1!0.34!1.17!GLI1;;chr12:85674018..85674039,+!p3@ALX1!0.34!1.17!ALX1;;chr13:100623360..100623373,-!p2@ZIC5!0.34!1.17!ZIC5;;chr14:61190359..61190385,-!p4@SIX4!0.34!1.17!SIX4;;chr1:26496382..26496457,+!p1@ZNF593!0.33!116.89!ZNF593;;chr8:103667935..103667960,-!p1@KLF10!0.33!86.94!KLF10;;chr19:3366570..3366619,+!p1@NFIC!0.33!61.68!NFIC;;chr14:21945335..21945419,+!p1@TOX4!0.33!49.93!TOX4;;chr12:57916584..57916682,+!p1@MBD6!0.33!38.38!MBD6;;chr6:35464817..35464894,-!p1@TEAD3!0.33!29.37!TEAD3;;chr6:144329384..144329405,-!p1@PLAGL1!0.33!21.93!PLAGL1;;chr19:42724436..42724507,+!p1@ZNF526!0.33!15.47!ZNF526;;chr8:144329092..144329140,+!p1@ZFP41!0.33!13.31!ZFP41;;chr15:85144229..85144273,+!p1@ZSCAN2!0.33!9.79!ZSCAN2;;chr16:71918033..71918101,-!p1@ZNF821!0.33!6.46!ZNF821;;chr15:67357992..67358009,+!p3@SMAD3!0.33!3.92!SMAD3;;chr11:64073006..64073017,+!p3@ESRRA!0.33!3.72!ESRRA;;chr1:8483821..8483845,-!p11@RERE!0.33!3.13!RERE;;chr15:42749722..42749739,-!p2@ZFP106!0.33!2.74!ZFP106;;chr19:44037334..44037365,+!p2@ZNF575!0.33!2.15!ZNF575;;chr7:6655225..6655279,+!p1@ENST00000457543!0.33!2.15!ZNF853;;chr19:12175504..12175519,+!p2@ZNF844!0.33!1.96!ZNF844;;chr4:103422232..103422241,+!p6@NFKB1!0.33!1.57!NFKB1;;chr1:8938736..8938756,-!p1@ENO1!0.32!2081.37!ENO1;;chr17:46125707..46125746,+!p2@NFE2L1!0.32!99.66!NFE2L1;;chr12:132628963..132629027,+!p1@NOC4L!0.32!27.41!NOC4L;;chr19:20844368..20844407,-!p1@ZNF626!0.32!26.04!ZNF626;;chr19:36208877..36208919,+!p1@MLL4!0.32!23.69!MLL4;;chr16:3162557..3162600,+!p1@ZNF205!0.32!15.47!ZNF205;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.32!14.10!ZNF319;;chr16:4322832..4322907,-!p1@TFAP4!0.32!13.90!TFAP4;;chr2:10183651..10183713,+!p1@KLF11!0.32!13.31!KLF11;;chr11:65686952..65686975,+!p5@DRAP1!0.32!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor1.CNhs11317.11491-119E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor1.CNhs11317.11491-119E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor1.CNhs11317.11491-119E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor1.CNhs11317.11491-119E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor1.CNhs11317.11491-119E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11491-119E6 | |id=FF:11491-119E6 | ||
|is_a=EFO:0002091;;FF:0000133 | |is_a=EFO:0002091;;FF:0000133 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11317 | |||
|library_id_phase_based=2:CNhs11317 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11491 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CCGTCC.11491 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11491 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CCGTCC.11491 | |||
|name=Pericytes, donor1 | |name=Pericytes, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11317,LSID767,release009,COMPLETED | |profile_hcage=CNhs11317,LSID767,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0168028875629142,0,0.0600585789640377,-0.156802969046517,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0878009992655527,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.200687325974275,0,0.137757433569215,0.0776589694549609,-0.0969923612426051,0,0,-0.019684657758136,0,0,0,0,0,0,0,0,0.0776589694549609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055545935572767,0.0218612701204728,0,0,0,0.0192121426431357,0.0863862623038425,0,0.25120118306085,0,0,-0.0203763817827455,-0.138477200800895,0,0,0,0.0776589694549609,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0575441091949805,0,0,0,-0.00749697791456982,0.0116371516487101,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC1205 | |rna_catalog_number=SC1205 | ||
Line 57: | Line 79: | ||
|rna_rin=9.4 | |rna_rin=9.4 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.19E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:3303 | |sample_cell_catalog=lot:3303 | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 105: | ||
|top_motifs=ZNF423:2.91828645731;EBF1:2.90190177844;GTF2A1,2:2.56398374841;ESR1:2.207699476;RXRA_VDR{dimer}:2.19513710948;ZIC1..3:1.96549922069;TAL1_TCF{3,4,12}:1.91558694578;ESRRA:1.86358450693;RXR{A,B,G}:1.83388711769;GZF1:1.705774058;TFAP4:1.70436747151;ZNF238:1.62499515314;TFCP2:1.58491370814;SP1:1.57242670777;TFAP2{A,C}:1.54827286875;RREB1:1.50138674443;PAX1,9:1.45453117524;HES1:1.39605002711;TLX1..3_NFIC{dimer}:1.37706946201;PATZ1:1.34414817119;bHLH_family:1.33710280448;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.27086941209;XCPE1{core}:1.25382718931;PAX5:1.22551218842;GLI1..3:1.21640125077;NR5A1,2:1.20690858493;ZNF148:1.17458380589;IKZF1:1.12367045058;RBPJ:1.11239314462;GTF2I:1.05820284008;HAND1,2:1.04833345506;FOXM1:1.00268073618;SRF:0.995391403227;ZBTB6:0.982388657036;MAZ:0.967182537452;RORA:0.917770509879;TFAP2B:0.822720172991;LHX3,4:0.766499126783;HNF4A_NR2F1,2:0.685025999342;HOX{A5,B5}:0.630166918834;FOXL1:0.609846642329;MED-1{core}:0.569718722956;HIC1:0.545622802704;ALX4:0.544789942768;GFI1B:0.53758454843;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.490941161968;TP53:0.458507906299;MZF1:0.449737185945;NR1H4:0.441605846247;NFE2L2:0.429544728812;TEAD1:0.428208896318;REST:0.422759567002;NR6A1:0.40893095099;LEF1_TCF7_TCF7L1,2:0.387355943891;KLF4:0.362662462771;GFI1:0.356917356575;EN1,2:0.33743926551;SOX5:0.292482765006;AR:0.264276015043;NANOG:0.223129509173;T:0.22010882552;ATF6:0.215847196054;EGR1..3:0.198344069665;XBP1:0.197316171949;STAT2,4,6:0.196452118787;HOX{A6,A7,B6,B7}:0.150650527618;MEF2{A,B,C,D}:0.140434962987;UFEwm:0.102741593688;HNF1A:0.0942407462137;TBP:0.0929608626862;NR3C1:0.0765500071993;SREBF1,2:0.0758662432448;HMX1:0.0722261567571;STAT5{A,B}:0.0637485530509;POU6F1:0.0549604076367;NKX2-3_NKX2-5:0.0274672991321;RFX1:0.0207810659653;MYBL2:0.0151175388431;NHLH1,2:0.0101503549941;ZNF143:0.00916325945905;CRX:-0.00340977433045;NFATC1..3:-0.0196164898414;SMAD1..7,9:-0.0361718482462;PBX1:-0.0409142591184;BACH2:-0.0488236253265;MTF1:-0.0594949370248;TBX4,5:-0.0665809478485;NFE2:-0.0759756690514;RUNX1..3:-0.0764999262419;YY1:-0.0910900921311;MYFfamily:-0.0912377066098;LMO2:-0.117606028527;SOX{8,9,10}:-0.126642130261;FOXQ1:-0.133781542373;NFIL3:-0.15038805893;EP300:-0.157518652979;GATA4:-0.165645366318;NFE2L1:-0.176706764886;MTE{core}:-0.178615386935;FOSL2:-0.189293224119;DBP:-0.19036141391;TOPORS:-0.220301891576;FOS_FOS{B,L1}_JUN{B,D}:-0.220740528886;NFY{A,B,C}:-0.224704617388;HLF:-0.26701166813;POU2F1..3:-0.272445486986;NFKB1_REL_RELA:-0.282071073271;ZNF384:-0.308435071193;SOX17:-0.35272975353;SNAI1..3:-0.357246035403;ETS1,2:-0.361324074332;PAX2:-0.36720811926;MYOD1:-0.374471417667;STAT1,3:-0.382548569004;NANOG{mouse}:-0.389775852481;JUN:-0.409040711646;PPARG:-0.411224725533;SPZ1:-0.417172946002;ZFP161:-0.42782058014;PRDM1:-0.433649298919;NRF1:-0.439527801408;PAX3,7:-0.4399286954;CUX2:-0.445877379193;BPTF:-0.448218916778;GCM1,2:-0.452195861097;PRRX1,2:-0.458347788481;AHR_ARNT_ARNT2:-0.465036376061;ONECUT1,2:-0.504822545954;VSX1,2:-0.508193464574;ADNP_IRX_SIX_ZHX:-0.521668008794;NKX6-1,2:-0.525098527057;FOXD3:-0.526037611894;CEBPA,B_DDIT3:-0.535159815391;SOX2:-0.54380754124;SPIB:-0.546500089956;MAFB:-0.556142962532;HIF1A:-0.55731128994;FOX{D1,D2}:-0.574719152383;TGIF1:-0.585301204777;AIRE:-0.61209727061;HMGA1,2:-0.613750875068;RFX2..5_RFXANK_RFXAP:-0.614541074826;GATA6:-0.651013295738;IRF1,2:-0.65461057432;FOXO1,3,4:-0.667647248434;IRF7:-0.679086861429;HSF1,2:-0.679830632407;ALX1:-0.694811629767;ZEB1:-0.69854308433;ARID5B:-0.726568954786;HOXA9_MEIS1:-0.731521188138;POU3F1..4:-0.742167464255;SPI1:-0.743229160843;EVI1:-0.752754938196;POU5F1:-0.792719543502;FOX{F1,F2,J1}:-0.808412002748;NKX3-2:-0.810330749563;ELK1,4_GABP{A,B1}:-0.838160271503;PDX1:-0.842755106785;TFDP1:-0.860389794026;ATF4:-0.88108246073;PAX8:-0.882460351966;HOX{A4,D4}:-0.934348662429;FOXP3:-0.939196159494;TEF:-0.95807691197;BREu{core}:-0.972929438185;PAX4:-0.980294940831;ATF2:-1.04638026613;OCT4_SOX2{dimer}:-1.06867881428;NKX2-2,8:-1.08643859105;ELF1,2,4:-1.12262567447;ATF5_CREB3:-1.12836331048;CREB1:-1.15851167507;NKX3-1:-1.20159190862;HBP1_HMGB_SSRP1_UBTF:-1.20397919505;FOXP1:-1.21254483042;CDC5L:-1.21684675101;CDX1,2,4:-1.22708654785;DMAP1_NCOR{1,2}_SMARC:-1.22738224626;PAX6:-1.24404365245;TLX2:-1.2996379659;FOXA2:-1.33470660966;MYB:-1.34608269895;E2F1..5:-1.36677229874;NKX2-1,4:-1.41465113441;NFIX:-1.47247248547;POU1F1:-1.62818136852;PITX1..3:-1.84963014469;FOX{I1,J2}:-2.07515912118;IKZF2:-2.29118732018;FOXN1:-2.3020028395;ZBTB16:-2.51930326011 | |top_motifs=ZNF423:2.91828645731;EBF1:2.90190177844;GTF2A1,2:2.56398374841;ESR1:2.207699476;RXRA_VDR{dimer}:2.19513710948;ZIC1..3:1.96549922069;TAL1_TCF{3,4,12}:1.91558694578;ESRRA:1.86358450693;RXR{A,B,G}:1.83388711769;GZF1:1.705774058;TFAP4:1.70436747151;ZNF238:1.62499515314;TFCP2:1.58491370814;SP1:1.57242670777;TFAP2{A,C}:1.54827286875;RREB1:1.50138674443;PAX1,9:1.45453117524;HES1:1.39605002711;TLX1..3_NFIC{dimer}:1.37706946201;PATZ1:1.34414817119;bHLH_family:1.33710280448;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.27086941209;XCPE1{core}:1.25382718931;PAX5:1.22551218842;GLI1..3:1.21640125077;NR5A1,2:1.20690858493;ZNF148:1.17458380589;IKZF1:1.12367045058;RBPJ:1.11239314462;GTF2I:1.05820284008;HAND1,2:1.04833345506;FOXM1:1.00268073618;SRF:0.995391403227;ZBTB6:0.982388657036;MAZ:0.967182537452;RORA:0.917770509879;TFAP2B:0.822720172991;LHX3,4:0.766499126783;HNF4A_NR2F1,2:0.685025999342;HOX{A5,B5}:0.630166918834;FOXL1:0.609846642329;MED-1{core}:0.569718722956;HIC1:0.545622802704;ALX4:0.544789942768;GFI1B:0.53758454843;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.490941161968;TP53:0.458507906299;MZF1:0.449737185945;NR1H4:0.441605846247;NFE2L2:0.429544728812;TEAD1:0.428208896318;REST:0.422759567002;NR6A1:0.40893095099;LEF1_TCF7_TCF7L1,2:0.387355943891;KLF4:0.362662462771;GFI1:0.356917356575;EN1,2:0.33743926551;SOX5:0.292482765006;AR:0.264276015043;NANOG:0.223129509173;T:0.22010882552;ATF6:0.215847196054;EGR1..3:0.198344069665;XBP1:0.197316171949;STAT2,4,6:0.196452118787;HOX{A6,A7,B6,B7}:0.150650527618;MEF2{A,B,C,D}:0.140434962987;UFEwm:0.102741593688;HNF1A:0.0942407462137;TBP:0.0929608626862;NR3C1:0.0765500071993;SREBF1,2:0.0758662432448;HMX1:0.0722261567571;STAT5{A,B}:0.0637485530509;POU6F1:0.0549604076367;NKX2-3_NKX2-5:0.0274672991321;RFX1:0.0207810659653;MYBL2:0.0151175388431;NHLH1,2:0.0101503549941;ZNF143:0.00916325945905;CRX:-0.00340977433045;NFATC1..3:-0.0196164898414;SMAD1..7,9:-0.0361718482462;PBX1:-0.0409142591184;BACH2:-0.0488236253265;MTF1:-0.0594949370248;TBX4,5:-0.0665809478485;NFE2:-0.0759756690514;RUNX1..3:-0.0764999262419;YY1:-0.0910900921311;MYFfamily:-0.0912377066098;LMO2:-0.117606028527;SOX{8,9,10}:-0.126642130261;FOXQ1:-0.133781542373;NFIL3:-0.15038805893;EP300:-0.157518652979;GATA4:-0.165645366318;NFE2L1:-0.176706764886;MTE{core}:-0.178615386935;FOSL2:-0.189293224119;DBP:-0.19036141391;TOPORS:-0.220301891576;FOS_FOS{B,L1}_JUN{B,D}:-0.220740528886;NFY{A,B,C}:-0.224704617388;HLF:-0.26701166813;POU2F1..3:-0.272445486986;NFKB1_REL_RELA:-0.282071073271;ZNF384:-0.308435071193;SOX17:-0.35272975353;SNAI1..3:-0.357246035403;ETS1,2:-0.361324074332;PAX2:-0.36720811926;MYOD1:-0.374471417667;STAT1,3:-0.382548569004;NANOG{mouse}:-0.389775852481;JUN:-0.409040711646;PPARG:-0.411224725533;SPZ1:-0.417172946002;ZFP161:-0.42782058014;PRDM1:-0.433649298919;NRF1:-0.439527801408;PAX3,7:-0.4399286954;CUX2:-0.445877379193;BPTF:-0.448218916778;GCM1,2:-0.452195861097;PRRX1,2:-0.458347788481;AHR_ARNT_ARNT2:-0.465036376061;ONECUT1,2:-0.504822545954;VSX1,2:-0.508193464574;ADNP_IRX_SIX_ZHX:-0.521668008794;NKX6-1,2:-0.525098527057;FOXD3:-0.526037611894;CEBPA,B_DDIT3:-0.535159815391;SOX2:-0.54380754124;SPIB:-0.546500089956;MAFB:-0.556142962532;HIF1A:-0.55731128994;FOX{D1,D2}:-0.574719152383;TGIF1:-0.585301204777;AIRE:-0.61209727061;HMGA1,2:-0.613750875068;RFX2..5_RFXANK_RFXAP:-0.614541074826;GATA6:-0.651013295738;IRF1,2:-0.65461057432;FOXO1,3,4:-0.667647248434;IRF7:-0.679086861429;HSF1,2:-0.679830632407;ALX1:-0.694811629767;ZEB1:-0.69854308433;ARID5B:-0.726568954786;HOXA9_MEIS1:-0.731521188138;POU3F1..4:-0.742167464255;SPI1:-0.743229160843;EVI1:-0.752754938196;POU5F1:-0.792719543502;FOX{F1,F2,J1}:-0.808412002748;NKX3-2:-0.810330749563;ELK1,4_GABP{A,B1}:-0.838160271503;PDX1:-0.842755106785;TFDP1:-0.860389794026;ATF4:-0.88108246073;PAX8:-0.882460351966;HOX{A4,D4}:-0.934348662429;FOXP3:-0.939196159494;TEF:-0.95807691197;BREu{core}:-0.972929438185;PAX4:-0.980294940831;ATF2:-1.04638026613;OCT4_SOX2{dimer}:-1.06867881428;NKX2-2,8:-1.08643859105;ELF1,2,4:-1.12262567447;ATF5_CREB3:-1.12836331048;CREB1:-1.15851167507;NKX3-1:-1.20159190862;HBP1_HMGB_SSRP1_UBTF:-1.20397919505;FOXP1:-1.21254483042;CDC5L:-1.21684675101;CDX1,2,4:-1.22708654785;DMAP1_NCOR{1,2}_SMARC:-1.22738224626;PAX6:-1.24404365245;TLX2:-1.2996379659;FOXA2:-1.33470660966;MYB:-1.34608269895;E2F1..5:-1.36677229874;NKX2-1,4:-1.41465113441;NFIX:-1.47247248547;POU1F1:-1.62818136852;PITX1..3:-1.84963014469;FOX{I1,J2}:-2.07515912118;IKZF2:-2.29118732018;FOXN1:-2.3020028395;ZBTB16:-2.51930326011 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11491-119E6;search_select_hide=table117:FF:11491-119E6 | |||
}} | }} |
Latest revision as of 18:04, 4 June 2020
Name: | Pericytes, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11317 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11317
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11317
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.41 |
10 | 10 | 0.16 |
100 | 100 | 0.985 |
101 | 101 | 0.445 |
102 | 102 | 0.674 |
103 | 103 | 0.913 |
104 | 104 | 0.342 |
105 | 105 | 0.0966 |
106 | 106 | 0.317 |
107 | 107 | 0.0904 |
108 | 108 | 0.805 |
109 | 109 | 0.12 |
11 | 11 | 0.206 |
110 | 110 | 0.236 |
111 | 111 | 0.575 |
112 | 112 | 0.715 |
113 | 113 | 0.0648 |
114 | 114 | 0.937 |
115 | 115 | 0.287 |
116 | 116 | 0.235 |
117 | 117 | 0.785 |
118 | 118 | 0.834 |
119 | 119 | 0.959 |
12 | 12 | 0.505 |
120 | 120 | 0.322 |
121 | 121 | 0.847 |
122 | 122 | 0.372 |
123 | 123 | 2.10785e-4 |
124 | 124 | 0.544 |
125 | 125 | 0.157 |
126 | 126 | 0.733 |
127 | 127 | 0.592 |
128 | 128 | 0.376 |
129 | 129 | 0.562 |
13 | 13 | 0.918 |
130 | 130 | 0.468 |
131 | 131 | 0.904 |
132 | 132 | 0.131 |
133 | 133 | 0.577 |
134 | 134 | 0.251 |
135 | 135 | 0.633 |
136 | 136 | 0.83 |
137 | 137 | 0.0342 |
138 | 138 | 0.435 |
139 | 139 | 0.855 |
14 | 14 | 0.789 |
140 | 140 | 0.206 |
141 | 141 | 0.165 |
142 | 142 | 0.83 |
143 | 143 | 0.324 |
144 | 144 | 0.843 |
145 | 145 | 0.472 |
146 | 146 | 0.332 |
147 | 147 | 0.38 |
148 | 148 | 0.559 |
149 | 149 | 0.0849 |
15 | 15 | 0.167 |
150 | 150 | 0.628 |
151 | 151 | 0.722 |
152 | 152 | 0.203 |
153 | 153 | 0.0639 |
154 | 154 | 0.0424 |
155 | 155 | 0.86 |
156 | 156 | 0.629 |
157 | 157 | 0.334 |
158 | 158 | 0.979 |
159 | 159 | 0.692 |
16 | 16 | 0.386 |
160 | 160 | 0.0753 |
161 | 161 | 0.728 |
162 | 162 | 0.173 |
163 | 163 | 0.621 |
164 | 164 | 0.327 |
165 | 165 | 0.125 |
166 | 166 | 0.66 |
167 | 167 | 0.188 |
168 | 168 | 0.998 |
169 | 169 | 0.0591 |
17 | 17 | 0.329 |
18 | 18 | 0.357 |
19 | 19 | 0.0843 |
2 | 2 | 0.167 |
20 | 20 | 0.732 |
21 | 21 | 0.802 |
22 | 22 | 0.0424 |
23 | 23 | 0.481 |
24 | 24 | 0.724 |
25 | 25 | 0.308 |
26 | 26 | 0.606 |
27 | 27 | 0.266 |
28 | 28 | 0.129 |
29 | 29 | 0.771 |
3 | 3 | 0.909 |
30 | 30 | 0.0311 |
31 | 31 | 0.401 |
32 | 32 | 2.70785e-8 |
33 | 33 | 0.969 |
34 | 34 | 0.0581 |
35 | 35 | 0.768 |
36 | 36 | 0.246 |
37 | 37 | 0.367 |
38 | 38 | 0.618 |
39 | 39 | 0.592 |
4 | 4 | 0.816 |
40 | 40 | 0.187 |
41 | 41 | 0.247 |
42 | 42 | 0.779 |
43 | 43 | 0.699 |
44 | 44 | 0.72 |
45 | 45 | 0.151 |
46 | 46 | 0.685 |
47 | 47 | 0.895 |
48 | 48 | 0.412 |
49 | 49 | 0.707 |
5 | 5 | 0.505 |
50 | 50 | 0.366 |
51 | 51 | 0.391 |
52 | 52 | 0.539 |
53 | 53 | 0.331 |
54 | 54 | 0.368 |
55 | 55 | 0.698 |
56 | 56 | 0.369 |
57 | 57 | 0.499 |
58 | 58 | 0.242 |
59 | 59 | 0.0156 |
6 | 6 | 0.387 |
60 | 60 | 0.451 |
61 | 61 | 0.906 |
62 | 62 | 0.295 |
63 | 63 | 0.746 |
64 | 64 | 0.328 |
65 | 65 | 0.061 |
66 | 66 | 0.872 |
67 | 67 | 0.754 |
68 | 68 | 0.187 |
69 | 69 | 0.134 |
7 | 7 | 0.971 |
70 | 70 | 0.664 |
71 | 71 | 0.898 |
72 | 72 | 0.57 |
73 | 73 | 0.121 |
74 | 74 | 0.152 |
75 | 75 | 0.818 |
76 | 76 | 0.293 |
77 | 77 | 0.0105 |
78 | 78 | 0.769 |
79 | 79 | 0.0163 |
8 | 8 | 0.395 |
80 | 80 | 0.538 |
81 | 81 | 0.412 |
82 | 82 | 0.221 |
83 | 83 | 0.487 |
84 | 84 | 0.312 |
85 | 85 | 0.159 |
86 | 86 | 0.93 |
87 | 87 | 0.924 |
88 | 88 | 0.268 |
89 | 89 | 0.265 |
9 | 9 | 0.0838 |
90 | 90 | 0.0187 |
91 | 91 | 0.335 |
92 | 92 | 0.998 |
93 | 93 | 0.709 |
94 | 94 | 0.936 |
95 | 95 | 0.518 |
96 | 96 | 0.616 |
97 | 97 | 0.388 |
98 | 98 | 0.462 |
99 | 99 | 0.0139 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11317
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000133 human pericyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0002575 (central nervous system pericyte)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000133 (human pericyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA