FF:11531-120A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005510 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005510 | ||
|accession_numbers=CAGE;DRX008252;DRR009124;DRZ000549;DRZ001934;DRZ011899;DRZ013284 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037249;DRR041615;DRZ007257 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002550 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000061 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11531-120A1 | |id=FF:11531-120A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000061 | ||
|is_obsolete= | |||
|library_id=CNhs11339 | |||
|library_id_phase_based=2:CNhs11339 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11531 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.TGACCA.11531 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11531 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.TGACCA.11531 | |||
|name=Fibroblast - Conjunctival, donor1 | |name=Fibroblast - Conjunctival, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11339,LSID769,release014,COMPLETED | |profile_hcage=CNhs11339,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.00983154668442054,-0.236689425665965,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.061894740526474,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.231205542601898,0,-0.0242205516594359,0,0,0,0,0,0,0,0,0.0214991137981425,0,0,0,0.287193678877935,0,0.0564825385542088,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.145642932602464,0,0,0,0,0,0,-0.00925347717137726,0,0,0,-0.0210276943879586,-0.0205560361219855,0,0.0914282698219536,0.0457141349109768,0,-0.00660708141575279,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.050659459011484,0,0,0,0,0.00859004709069565,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.00660708141575279,0,0,0,0.0914282698219536,0,0,0,0,0.0914282698219536,0,0,-0.0159733326836664,0,0.0185195404087311,-0.143515142523472,0,0,0.0316798557846915,0,0,0,0,0,0,0,0,0,0.708079880653038,0,0.116503647743909,0,0,0,0,-0.0186252810838506,-0.214043961076454,0,-0.128543926238533,-0.0683442610773682,0,0,0,0,-0.0239377897539545,0,-0.120879483793741,0.0087081014985363,0.166916199333224,0.162608567745982,-0.055712496781182,0,0,0,-0.136802788880336,-0.182179165787286,0,0,0.0675311225980702,-0.135635483649682,0,0,0.34551980523199,0,-0.112138981342384,0.17985388490643,0,-0.169280315538305,0,0,0,0,0,0,0,0,0,0,0,0.071678767756152,-0.160072397345745,0.00423607607762945,0,0.0914282698219536,0,-0.15162959475764,0.0914282698219536,0,0.861438071611656,0.340658940143805,0.0708689678712885,0.0505730314072276,0,-0.21096145718796,0.0364477226941535,-0.19761538384276,0.193027217742709,0.139791829506796,0.0972119593280872,0.0857612360139168,-0.00925347717137726,0.0645179728998214,0.00329120200623153,0.260059909579039,0.122252169285367,0.275971677774084,-0.0912848301574527,0.0914282698219536,0,0.149082112144177,-0.477950108359495,0,0,0.116930335804938,-0.076936009140075,0.150149940863404,-0.106154747568366,-0.0200413222794203,0.166133283693272,0.856434736640155,0.001136655696236,0,0.245858392430317,0,0,-0.0027969933986397,-0.0105181991406302,-0.154417601086817,0.120738213604946,0,-0.147196197080029,-0.0683442610773682,0,0.176574818496057,0.177140844541529,0,0,0.0282678194102992,0,0,0,0,0,0.158395968090976,-0.252298464152232,-0.232855561555545,0,0.139496292691694,0,-0.035203971283328,0,0.218429116657491,0.0209063018758294,0,0.0733759341897067,0,0.221582384808212,-0.204056109787374,0.0832082018812441,-0.041112072243971,-0.0584468268118252,-0.0989774277552261,-0.0537400693857306,0.265493030642911,0.0165197322210866,0.123512976298875,1.32017675134365,0,-0.166058506246752,-0.342716866890572,0.0300168792442448,0.0520052090766911,0.0407522452153629,-0.314041791546375,0,-0.374134258471668,0,0.037222306277794,0.0407028691843322,0.0848748435578309,-0.328047719583968,0,0.151230355435241,-0.0157542090949491,0,0.0311930554864416,0,0,0.0808384592672587,0.123405629485182,-0.120222158042636,-0.0555313570125828,0,0.0607104436241765,0.0914282698219536,0,-0.0130852840843534,-0.144047767942435,0,-0.0150743853282777,-0.150629805620565,-0.145642932602464,0.220810191296018,0,0.0440527258178183,0.0518310170520064,0,0.381282733147767,-0.514499793996077,0.223473947825366,-0.0386467033010611,0.378168164533749,0.0152685327351449,-0.0251647097876438,0,0,-0.0106115666319521,0,0.372598419532666,0,0,0.248180955527166,0,0,0,0.231205542601898,0,0,0,0,0,0.0457141349109768,0,0,-0.753247302824889,-0.12362778761455,0,0.129030760151955,0,0.0914282698219536,0,0,0,0,0,0,0.0703298785932305,0,-0.12301741567642,0,0,0,0,-0.124295132731521,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.0336978127682896,-0.101318073591636,0,0,0,-0.27695440160179,0,0,0,0,-0.182171582014671,0,0,0,0,0.332981408382689,0.0098463902751122,0,-0.114561160140617,0.353196558968251,-0.458829738634629,0,0.0914282698219536,-0.094430932456664,0,0,-0.543338562472508,0,0,0,0,0,0,0,0,0,-0.122886242577802,0,0,0,0,0,0,0,0,0,0,0.0914282698219536,-0.213317017125219,0.138981485943388,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.194184670408783,0,0,0,0,0,0,0,0,-0.184232260785308,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.47337885133193,0,0,0.00983154668442054,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0318908162134941,0.133188029523972,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.173309305168957,0,0,0,-0.0133681149672028,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576661499225962,0.0586825208863895,-0.0547999550137163,0,0,0,0.16198819850463,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.132411989952707,0.118243494275967,-0.016543191455411,0,0,0,-0.054385572482455,0.287193678877935,0,0.107217059020564,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0914282698219536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.061894740526474,0,0,0,0,0,0,0,0,0,0,0,0.0457141349109768,0.0457141349109768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.12165795983509,0,0,0,0,0,0,0.0914282698219536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0241461338026281,0,0,0,0,0,0,0,0,0.231205542601898,0,0,0,0,-0.0482220752390542,0,0.0825395671031965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0057401453644584,0,0,0.0914282698219536,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.0816729772380949,0,0,0,0,0,0,0,0,0,0,0,0,0.169885363451772,0,0,0,0,0,0,0,0,0,0,0.0429982275962849,0,0,0,0,0,0,0,0,0.607045050281711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00859004709069565,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC6575 | |rna_catalog_number=SC6575 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120A1 | |rna_tube_id=120A1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.TGACCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.03302641329273e-235!GO:0043231;intracellular membrane-bound organelle;1.14891448345644e-192!GO:0043227;membrane-bound organelle;2.7735198382139e-192!GO:0043226;organelle;1.87329517358092e-191!GO:0043229;intracellular organelle;3.36124413380273e-191!GO:0005737;cytoplasm;1.17455376008134e-175!GO:0044422;organelle part;3.43739160127699e-135!GO:0044446;intracellular organelle part;5.43272400555435e-134!GO:0044444;cytoplasmic part;2.65151979837643e-122!GO:0044237;cellular metabolic process;2.04193578682949e-91!GO:0044238;primary metabolic process;3.68545193294695e-91!GO:0032991;macromolecular complex;1.72736714927065e-88!GO:0043170;macromolecule metabolic process;1.12635258240606e-82!GO:0030529;ribonucleoprotein complex;2.79042149598453e-82!GO:0005634;nucleus;5.34405295063843e-81!GO:0043233;organelle lumen;9.41306421972668e-74!GO:0031974;membrane-enclosed lumen;9.41306421972668e-74!GO:0005739;mitochondrion;8.16246073781604e-73!GO:0005515;protein binding;1.05200751762445e-69!GO:0044428;nuclear part;5.88778495469394e-68!GO:0003723;RNA binding;1.30924451545477e-63!GO:0005840;ribosome;2.02087666845075e-51!GO:0043283;biopolymer metabolic process;4.59599506019109e-49!GO:0006412;translation;2.60065605310473e-48!GO:0044429;mitochondrial part;2.20089478726723e-47!GO:0031090;organelle membrane;9.28244154515515e-46!GO:0016043;cellular component organization and biogenesis;2.34445591003086e-45!GO:0010467;gene expression;2.85043057382439e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.93062047674416e-45!GO:0003735;structural constituent of ribosome;2.33856790396861e-44!GO:0006396;RNA processing;2.41453080324728e-44!GO:0031981;nuclear lumen;5.48013253011408e-44!GO:0019538;protein metabolic process;6.53602642197041e-44!GO:0009058;biosynthetic process;7.04762936372834e-44!GO:0043234;protein complex;8.56786235244051e-43!GO:0044249;cellular biosynthetic process;3.09817983893375e-42!GO:0044260;cellular macromolecule metabolic process;3.85208886085509e-40!GO:0031967;organelle envelope;5.5277838597248e-40!GO:0031975;envelope;1.37523895868537e-39!GO:0044267;cellular protein metabolic process;3.55157952703562e-39!GO:0033279;ribosomal subunit;5.45075094502782e-38!GO:0009059;macromolecule biosynthetic process;5.69540976379855e-38!GO:0006996;organelle organization and biogenesis;7.79240698992205e-37!GO:0033036;macromolecule localization;4.47349236161279e-36!GO:0015031;protein transport;7.7178571735678e-36!GO:0016071;mRNA metabolic process;1.80300006100926e-33!GO:0008104;protein localization;9.65695786263255e-33!GO:0045184;establishment of protein localization;1.43042480929473e-32!GO:0005829;cytosol;2.36541287774943e-32!GO:0043228;non-membrane-bound organelle;3.13263116296134e-32!GO:0043232;intracellular non-membrane-bound organelle;3.13263116296134e-32!GO:0008380;RNA splicing;3.41560369197507e-31!GO:0005740;mitochondrial envelope;4.23142508227058e-31!GO:0006259;DNA metabolic process;1.38377104676268e-30!GO:0065003;macromolecular complex assembly;4.87577216407547e-30!GO:0046907;intracellular transport;1.82420694431098e-29!GO:0031966;mitochondrial membrane;5.67156662326441e-29!GO:0006397;mRNA processing;2.77843302752171e-28!GO:0019866;organelle inner membrane;2.57479726408636e-27!GO:0003676;nucleic acid binding;3.08695062137106e-27!GO:0005654;nucleoplasm;4.5097724408836e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.11804578289202e-26!GO:0022607;cellular component assembly;1.41636780358777e-26!GO:0005743;mitochondrial inner membrane;5.1271693413526e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.1440361828651e-25!GO:0006886;intracellular protein transport;3.29476474057869e-25!GO:0044451;nucleoplasm part;5.40475580700017e-23!GO:0007049;cell cycle;9.5627981388049e-23!GO:0005681;spliceosome;3.62945044926999e-22!GO:0016070;RNA metabolic process;3.84252401633068e-21!GO:0044445;cytosolic part;1.60169560415314e-20!GO:0015934;large ribosomal subunit;1.78852757655548e-20!GO:0031980;mitochondrial lumen;4.81215530425108e-20!GO:0005759;mitochondrial matrix;4.81215530425108e-20!GO:0008134;transcription factor binding;3.21289541613433e-19!GO:0000166;nucleotide binding;3.67009711873745e-19!GO:0015935;small ribosomal subunit;1.65621081205466e-18!GO:0005730;nucleolus;2.82472337182698e-18!GO:0044455;mitochondrial membrane part;3.61348954839885e-18!GO:0016874;ligase activity;3.94618666762006e-18!GO:0006119;oxidative phosphorylation;4.32502047097473e-18!GO:0022402;cell cycle process;5.50291753852067e-18!GO:0051649;establishment of cellular localization;7.56116076781242e-18!GO:0051641;cellular localization;1.20107978334026e-17!GO:0006457;protein folding;1.61741801247903e-17!GO:0048770;pigment granule;1.95854018674996e-17!GO:0042470;melanosome;1.95854018674996e-17!GO:0051276;chromosome organization and biogenesis;1.67928215754218e-16!GO:0005783;endoplasmic reticulum;1.88440891828546e-16!GO:0012505;endomembrane system;2.31233380979501e-16!GO:0000278;mitotic cell cycle;3.4777310612403e-16!GO:0051186;cofactor metabolic process;6.42883309573312e-16!GO:0005761;mitochondrial ribosome;2.35217953898008e-15!GO:0000313;organellar ribosome;2.35217953898008e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.99188647038136e-15!GO:0006512;ubiquitin cycle;3.78479784741026e-15!GO:0016462;pyrophosphatase activity;4.60086062707957e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.73206787226945e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;6.98189141535807e-15!GO:0044432;endoplasmic reticulum part;8.7021686344127e-15!GO:0005746;mitochondrial respiratory chain;1.61238222040938e-14!GO:0017111;nucleoside-triphosphatase activity;2.0731292001375e-14!GO:0006323;DNA packaging;2.21312056835635e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.93824716380295e-14!GO:0005694;chromosome;4.61170508280652e-14!GO:0006605;protein targeting;6.65757740583128e-14!GO:0044265;cellular macromolecule catabolic process;6.70813118592911e-14!GO:0022618;protein-RNA complex assembly;9.40615785315871e-14!GO:0006974;response to DNA damage stimulus;1.35393872163886e-13!GO:0003712;transcription cofactor activity;1.74614163336266e-13!GO:0044427;chromosomal part;1.81700376536862e-13!GO:0043285;biopolymer catabolic process;2.04513449664451e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.39853261724983e-13!GO:0003954;NADH dehydrogenase activity;3.39853261724983e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.39853261724983e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.34318983606688e-13!GO:0008135;translation factor activity, nucleic acid binding;4.78853108886393e-13!GO:0032553;ribonucleotide binding;7.7566985661202e-13!GO:0032555;purine ribonucleotide binding;7.7566985661202e-13!GO:0017076;purine nucleotide binding;9.95510873005178e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.18618212959406e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.44022314712373e-12!GO:0019941;modification-dependent protein catabolic process;1.51643047944872e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.51643047944872e-12!GO:0065004;protein-DNA complex assembly;1.54362314710676e-12!GO:0009057;macromolecule catabolic process;2.61611694466132e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.61611694466132e-12!GO:0043412;biopolymer modification;2.61611694466132e-12!GO:0044257;cellular protein catabolic process;3.28424680282687e-12!GO:0044248;cellular catabolic process;3.5107381319246e-12!GO:0042254;ribosome biogenesis and assembly;3.68491912127665e-12!GO:0006732;coenzyme metabolic process;3.7945220841036e-12!GO:0022403;cell cycle phase;5.88097976170938e-12!GO:0051082;unfolded protein binding;7.49716991843162e-12!GO:0005794;Golgi apparatus;9.19045741918239e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.05557356484517e-11!GO:0042773;ATP synthesis coupled electron transport;1.05557356484517e-11!GO:0006366;transcription from RNA polymerase II promoter;1.24670774837416e-11!GO:0007067;mitosis;1.32297589764631e-11!GO:0000087;M phase of mitotic cell cycle;1.4124128057323e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.84602030275398e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.93676354018449e-11!GO:0000375;RNA splicing, via transesterification reactions;1.93676354018449e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.93676354018449e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.0239640873661e-11!GO:0045271;respiratory chain complex I;2.0239640873661e-11!GO:0005747;mitochondrial respiratory chain complex I;2.0239640873661e-11!GO:0006333;chromatin assembly or disassembly;2.11571405532848e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.62408934888412e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.10657866939155e-11!GO:0000785;chromatin;5.65501943536134e-11!GO:0006464;protein modification process;6.30065234328801e-11!GO:0005524;ATP binding;6.42749479492944e-11!GO:0006399;tRNA metabolic process;9.18540520997037e-11!GO:0012501;programmed cell death;9.45969920503908e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.45969920503908e-11!GO:0032559;adenyl ribonucleotide binding;9.83492078870651e-11!GO:0048193;Golgi vesicle transport;1.11650020880692e-10!GO:0005793;ER-Golgi intermediate compartment;1.20245026701613e-10!GO:0051726;regulation of cell cycle;1.39116901639796e-10!GO:0030163;protein catabolic process;1.54598687492471e-10!GO:0000074;regulation of progression through cell cycle;1.54598687492471e-10!GO:0006281;DNA repair;1.62458528731986e-10!GO:0030554;adenyl nucleotide binding;1.72624698847725e-10!GO:0006334;nucleosome assembly;1.72624698847725e-10!GO:0006915;apoptosis;1.78441606086515e-10!GO:0005789;endoplasmic reticulum membrane;2.02802860164266e-10!GO:0031497;chromatin assembly;3.56890656364869e-10!GO:0016604;nuclear body;3.57420480277744e-10!GO:0009055;electron carrier activity;3.59117852457538e-10!GO:0003743;translation initiation factor activity;4.16024770367435e-10!GO:0005635;nuclear envelope;4.47142605429944e-10!GO:0006913;nucleocytoplasmic transport;5.47127685291508e-10!GO:0009719;response to endogenous stimulus;8.18876331221542e-10!GO:0006260;DNA replication;9.07044979107612e-10!GO:0051169;nuclear transport;9.7495499684951e-10!GO:0008219;cell death;2.2957517870278e-09!GO:0016265;death;2.2957517870278e-09!GO:0050794;regulation of cellular process;2.2957517870278e-09!GO:0043687;post-translational protein modification;2.30062821085266e-09!GO:0031965;nuclear membrane;2.30577047182933e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.04774056993509e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.04774056993509e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.04774056993509e-09!GO:0051188;cofactor biosynthetic process;5.09803638514104e-09!GO:0000279;M phase;7.29399914908573e-09!GO:0044453;nuclear membrane part;7.80039201834581e-09!GO:0006413;translational initiation;8.54682487846596e-09!GO:0051301;cell division;1.0360363447293e-08!GO:0043038;amino acid activation;1.07676912417942e-08!GO:0006418;tRNA aminoacylation for protein translation;1.07676912417942e-08!GO:0043039;tRNA aminoacylation;1.07676912417942e-08!GO:0017038;protein import;1.17406110719699e-08!GO:0006446;regulation of translational initiation;1.53288915604417e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.61333719002136e-08!GO:0048523;negative regulation of cellular process;1.77379112650787e-08!GO:0008639;small protein conjugating enzyme activity;1.78610093436111e-08!GO:0007005;mitochondrion organization and biogenesis;2.34118967261561e-08!GO:0015630;microtubule cytoskeleton;2.66776517478673e-08!GO:0006364;rRNA processing;2.85590500961983e-08!GO:0009259;ribonucleotide metabolic process;2.92911840812353e-08!GO:0016607;nuclear speck;2.9393419951496e-08!GO:0006163;purine nucleotide metabolic process;3.0408610050473e-08!GO:0004842;ubiquitin-protein ligase activity;3.7248395191774e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.14362990166664e-08!GO:0016072;rRNA metabolic process;5.09580030027691e-08!GO:0009150;purine ribonucleotide metabolic process;5.75752336459825e-08!GO:0065002;intracellular protein transport across a membrane;6.0073430491401e-08!GO:0016192;vesicle-mediated transport;6.94032946402008e-08!GO:0019787;small conjugating protein ligase activity;9.37257321601399e-08!GO:0006164;purine nucleotide biosynthetic process;9.47375819440699e-08!GO:0008565;protein transporter activity;1.0427232941223e-07!GO:0016568;chromatin modification;1.20326398149497e-07!GO:0003713;transcription coactivator activity;1.49194931557895e-07!GO:0009260;ribonucleotide biosynthetic process;1.57668267024033e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.72409024564266e-07!GO:0009060;aerobic respiration;1.92258283048106e-07!GO:0006461;protein complex assembly;1.97013448969272e-07!GO:0005667;transcription factor complex;2.13317316548941e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.19795834534343e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.19795834534343e-07!GO:0016563;transcription activator activity;2.53524827532404e-07!GO:0051246;regulation of protein metabolic process;3.25335319726355e-07!GO:0016881;acid-amino acid ligase activity;3.35046919675426e-07!GO:0016740;transferase activity;3.65896868076031e-07!GO:0045333;cellular respiration;3.70885525068038e-07!GO:0005643;nuclear pore;4.05983093834873e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.08553477358668e-07!GO:0048519;negative regulation of biological process;5.30591411124498e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.55533945858218e-07!GO:0009141;nucleoside triphosphate metabolic process;5.63268570924423e-07!GO:0042981;regulation of apoptosis;7.63184325850529e-07!GO:0009056;catabolic process;8.99515868006417e-07!GO:0043067;regulation of programmed cell death;9.06414266411266e-07!GO:0042623;ATPase activity, coupled;1.12716445247729e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12716445247729e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.12716445247729e-06!GO:0009108;coenzyme biosynthetic process;1.52864560000455e-06!GO:0003924;GTPase activity;1.70917489506797e-06!GO:0005788;endoplasmic reticulum lumen;1.86084166724118e-06!GO:0004386;helicase activity;1.86852347112172e-06!GO:0050789;regulation of biological process;1.87512299320818e-06!GO:0016887;ATPase activity;1.99285490823224e-06!GO:0003697;single-stranded DNA binding;2.00894746627174e-06!GO:0016779;nucleotidyltransferase activity;2.12341934818393e-06!GO:0045786;negative regulation of progression through cell cycle;2.18163563987546e-06!GO:0051329;interphase of mitotic cell cycle;2.2372840612586e-06!GO:0008026;ATP-dependent helicase activity;2.52229193141774e-06!GO:0046930;pore complex;2.58319967821039e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.64061277313808e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.64061277313808e-06!GO:0006099;tricarboxylic acid cycle;2.71439233762411e-06!GO:0046356;acetyl-CoA catabolic process;2.71439233762411e-06!GO:0006403;RNA localization;2.72606845102229e-06!GO:0050657;nucleic acid transport;2.87988542305956e-06!GO:0051236;establishment of RNA localization;2.87988542305956e-06!GO:0050658;RNA transport;2.87988542305956e-06!GO:0019222;regulation of metabolic process;2.89911184822158e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.00579993264828e-06!GO:0000786;nucleosome;3.00579993264828e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.42170623537181e-06!GO:0008654;phospholipid biosynthetic process;3.44654921643585e-06!GO:0015986;ATP synthesis coupled proton transport;3.46305943029396e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.46305943029396e-06!GO:0031324;negative regulation of cellular metabolic process;3.8845222351328e-06!GO:0016491;oxidoreductase activity;3.92843283145892e-06!GO:0005768;endosome;4.18347528168683e-06!GO:0003714;transcription corepressor activity;4.41192871634848e-06!GO:0009117;nucleotide metabolic process;4.47555922092882e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.84560710390567e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.24476943448703e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.24476943448703e-06!GO:0006084;acetyl-CoA metabolic process;5.52206103627086e-06!GO:0030120;vesicle coat;5.52206103627086e-06!GO:0030662;coated vesicle membrane;5.52206103627086e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.57759951783124e-06!GO:0032446;protein modification by small protein conjugation;5.59031131237023e-06!GO:0009109;coenzyme catabolic process;5.67302720907823e-06!GO:0051325;interphase;5.81614462967018e-06!GO:0048475;coated membrane;5.81614462967018e-06!GO:0030117;membrane coat;5.81614462967018e-06!GO:0051187;cofactor catabolic process;6.45615837941124e-06!GO:0005762;mitochondrial large ribosomal subunit;7.37187490227159e-06!GO:0000315;organellar large ribosomal subunit;7.37187490227159e-06!GO:0016567;protein ubiquitination;7.70317823569257e-06!GO:0046034;ATP metabolic process;7.77835189326233e-06!GO:0005813;centrosome;7.92443148724301e-06!GO:0045454;cell redox homeostasis;7.98503426716289e-06!GO:0045259;proton-transporting ATP synthase complex;8.17687738388046e-06!GO:0019829;cation-transporting ATPase activity;1.0566885980303e-05!GO:0043566;structure-specific DNA binding;1.09511945217202e-05!GO:0016564;transcription repressor activity;1.23559446043151e-05!GO:0005819;spindle;1.60380120868659e-05!GO:0051170;nuclear import;1.80141068520283e-05!GO:0006091;generation of precursor metabolites and energy;1.84090245363036e-05!GO:0031252;leading edge;2.38523697668621e-05!GO:0044440;endosomal part;2.4174153196658e-05!GO:0010008;endosome membrane;2.4174153196658e-05!GO:0051427;hormone receptor binding;2.43223013461561e-05!GO:0005815;microtubule organizing center;2.4442650016607e-05!GO:0043069;negative regulation of programmed cell death;2.50651317383171e-05!GO:0006606;protein import into nucleus;2.52364643508738e-05!GO:0006916;anti-apoptosis;2.664601022148e-05!GO:0003899;DNA-directed RNA polymerase activity;2.78162822168292e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.03713286515443e-05!GO:0043066;negative regulation of apoptosis;3.08314623918981e-05!GO:0006754;ATP biosynthetic process;3.5571532530707e-05!GO:0006753;nucleoside phosphate metabolic process;3.5571532530707e-05!GO:0016853;isomerase activity;3.6884718456031e-05!GO:0009892;negative regulation of metabolic process;3.98275374709934e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.62074383420335e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.86856584122253e-05!GO:0035257;nuclear hormone receptor binding;5.11163316857375e-05!GO:0044431;Golgi apparatus part;5.24109567231783e-05!GO:0000245;spliceosome assembly;5.5124164633932e-05!GO:0043623;cellular protein complex assembly;5.77077472363996e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.82923964608559e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.8375264291001e-05!GO:0005905;coated pit;5.98165731413262e-05!GO:0000314;organellar small ribosomal subunit;6.97119116284954e-05!GO:0005763;mitochondrial small ribosomal subunit;6.97119116284954e-05!GO:0046474;glycerophospholipid biosynthetic process;7.26249204174465e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.45552661899976e-05!GO:0016481;negative regulation of transcription;8.17794453606011e-05!GO:0006793;phosphorus metabolic process;8.39838212007085e-05!GO:0006796;phosphate metabolic process;8.39838212007085e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.62467174151686e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.24780964316279e-05!GO:0051028;mRNA transport;9.25955714267419e-05!GO:0030867;rough endoplasmic reticulum membrane;9.49339326895766e-05!GO:0005770;late endosome;0.00010052794236348!GO:0006752;group transfer coenzyme metabolic process;0.000101866247605372!GO:0005525;GTP binding;0.000145500532589176!GO:0016859;cis-trans isomerase activity;0.000157086332917657!GO:0045941;positive regulation of transcription;0.000166314043131158!GO:0048522;positive regulation of cellular process;0.000169484252877971!GO:0019867;outer membrane;0.000172798602384033!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000186587487094623!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000186622220190213!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000189790421380738!GO:0031968;organelle outer membrane;0.000193225702925356!GO:0005773;vacuole;0.000216209787720659!GO:0007010;cytoskeleton organization and biogenesis;0.000243283407179717!GO:0005791;rough endoplasmic reticulum;0.00026196126300288!GO:0033116;ER-Golgi intermediate compartment membrane;0.000281479041940103!GO:0030176;integral to endoplasmic reticulum membrane;0.000288053904899675!GO:0019899;enzyme binding;0.000295949581168444!GO:0030036;actin cytoskeleton organization and biogenesis;0.00033149137680233!GO:0007006;mitochondrial membrane organization and biogenesis;0.000346020902413401!GO:0000151;ubiquitin ligase complex;0.000350955998368497!GO:0006613;cotranslational protein targeting to membrane;0.000367684460241184!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000392989580378579!GO:0016023;cytoplasmic membrane-bound vesicle;0.000401893450773568!GO:0031323;regulation of cellular metabolic process;0.00040324343952834!GO:0006626;protein targeting to mitochondrion;0.000406482626375869!GO:0006350;transcription;0.000417824883533478!GO:0006839;mitochondrial transport;0.000421735510847955!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000443213845697873!GO:0004298;threonine endopeptidase activity;0.000444149750326536!GO:0008250;oligosaccharyl transferase complex;0.000449088308504298!GO:0043681;protein import into mitochondrion;0.000452631519484108!GO:0043021;ribonucleoprotein binding;0.000474612018709389!GO:0031988;membrane-bound vesicle;0.00047569018765691!GO:0016310;phosphorylation;0.000562187845283867!GO:0003724;RNA helicase activity;0.000583312636149125!GO:0046467;membrane lipid biosynthetic process;0.000611046165130199!GO:0007051;spindle organization and biogenesis;0.000618764795116948!GO:0005048;signal sequence binding;0.000619528370309428!GO:0045893;positive regulation of transcription, DNA-dependent;0.000650399807039943!GO:0030880;RNA polymerase complex;0.000661202182140607!GO:0005741;mitochondrial outer membrane;0.000666464000696514!GO:0051168;nuclear export;0.000668988439692681!GO:0007050;cell cycle arrest;0.000760242925647479!GO:0005798;Golgi-associated vesicle;0.000769557873001503!GO:0008033;tRNA processing;0.000770439325865995!GO:0016787;hydrolase activity;0.000820801519493018!GO:0005769;early endosome;0.00086220877222952!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000874891083391227!GO:0000139;Golgi membrane;0.000880416954114043!GO:0000323;lytic vacuole;0.00091604942544778!GO:0005764;lysosome;0.00091604942544778!GO:0051789;response to protein stimulus;0.000941642329263937!GO:0006986;response to unfolded protein;0.000941642329263937!GO:0008610;lipid biosynthetic process;0.000946084072208776!GO:0008361;regulation of cell size;0.000956808251546415!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00101599501892047!GO:0019752;carboxylic acid metabolic process;0.00106416460827849!GO:0005874;microtubule;0.00107502303419502!GO:0046489;phosphoinositide biosynthetic process;0.00110559935487395!GO:0006402;mRNA catabolic process;0.0011164476040544!GO:0032561;guanyl ribonucleotide binding;0.00117307796727683!GO:0019001;guanyl nucleotide binding;0.00117307796727683!GO:0006082;organic acid metabolic process;0.00117636516419047!GO:0016049;cell growth;0.00120332070117897!GO:0018196;peptidyl-asparagine modification;0.00131841358303612!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00131841358303612!GO:0042802;identical protein binding;0.00136600954833994!GO:0006414;translational elongation;0.00136600954833994!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.001440216512908!GO:0043488;regulation of mRNA stability;0.00145198949448715!GO:0043487;regulation of RNA stability;0.00145198949448715!GO:0006520;amino acid metabolic process;0.00145318803100051!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00155416234343669!GO:0000428;DNA-directed RNA polymerase complex;0.00155416234343669!GO:0010468;regulation of gene expression;0.00166455230542874!GO:0051920;peroxiredoxin activity;0.00168650305740526!GO:0043284;biopolymer biosynthetic process;0.00179090809845154!GO:0031982;vesicle;0.00179273333396477!GO:0031410;cytoplasmic vesicle;0.00183217958868337!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00183882988201145!GO:0005885;Arp2/3 protein complex;0.00186127327417208!GO:0065007;biological regulation;0.00203169802939296!GO:0006979;response to oxidative stress;0.00204935317383689!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0021636399841871!GO:0000049;tRNA binding;0.00217179962785486!GO:0016741;transferase activity, transferring one-carbon groups;0.00219702867692653!GO:0030132;clathrin coat of coated pit;0.00222807458908937!GO:0008632;apoptotic program;0.00226811605357282!GO:0030133;transport vesicle;0.00228372128549776!GO:0048471;perinuclear region of cytoplasm;0.00237490983114459!GO:0008168;methyltransferase activity;0.00240098630659608!GO:0019843;rRNA binding;0.0024023191762514!GO:0009165;nucleotide biosynthetic process;0.00240813871733067!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00254613401361456!GO:0008652;amino acid biosynthetic process;0.00257467688489699!GO:0044262;cellular carbohydrate metabolic process;0.00264853656831238!GO:0006261;DNA-dependent DNA replication;0.0027567101129583!GO:0006595;polyamine metabolic process;0.00278752712303968!GO:0004576;oligosaccharyl transferase activity;0.00278752712303968!GO:0031072;heat shock protein binding;0.00280902026636545!GO:0030029;actin filament-based process;0.00281877461243351!GO:0003684;damaged DNA binding;0.00288113961434881!GO:0015631;tubulin binding;0.00330256416147966!GO:0016126;sterol biosynthetic process;0.00335089774827049!GO:0003682;chromatin binding;0.00337199985313903!GO:0006401;RNA catabolic process;0.00342828665741944!GO:0006383;transcription from RNA polymerase III promoter;0.00342828665741944!GO:0005684;U2-dependent spliceosome;0.0034703959851301!GO:0044452;nucleolar part;0.0034703959851301!GO:0006984;ER-nuclear signaling pathway;0.00351021260295997!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00355532261295!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00358544420847704!GO:0006352;transcription initiation;0.00359900479456!GO:0045892;negative regulation of transcription, DNA-dependent;0.00359900479456!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00372547619566403!GO:0006778;porphyrin metabolic process;0.00397905544143826!GO:0033013;tetrapyrrole metabolic process;0.00397905544143826!GO:0006289;nucleotide-excision repair;0.00399172280890314!GO:0046483;heterocycle metabolic process;0.00399326976332192!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00400078056945341!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00400078056945341!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00400078056945341!GO:0000075;cell cycle checkpoint;0.00401384795772468!GO:0016363;nuclear matrix;0.00408145368453515!GO:0051539;4 iron, 4 sulfur cluster binding;0.00416044489186618!GO:0006740;NADPH regeneration;0.00431554163911728!GO:0006098;pentose-phosphate shunt;0.00431554163911728!GO:0006779;porphyrin biosynthetic process;0.00447651185558249!GO:0033014;tetrapyrrole biosynthetic process;0.00447651185558249!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00469683102067506!GO:0017166;vinculin binding;0.0047389722599084!GO:0051540;metal cluster binding;0.0047389722599084!GO:0051536;iron-sulfur cluster binding;0.0047389722599084!GO:0006612;protein targeting to membrane;0.00483089741888237!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00483685535974658!GO:0048487;beta-tubulin binding;0.00501423160731087!GO:0001558;regulation of cell growth;0.00502949023061507!GO:0000059;protein import into nucleus, docking;0.00504900336518857!GO:0000082;G1/S transition of mitotic cell cycle;0.00506644292788427!GO:0000775;chromosome, pericentric region;0.0050967345461998!GO:0030521;androgen receptor signaling pathway;0.00512180542378058!GO:0048518;positive regulation of biological process;0.00529888064801573!GO:0008186;RNA-dependent ATPase activity;0.00532483006823527!GO:0030118;clathrin coat;0.005397748358683!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00604321863116892!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00604321863116892!GO:0051252;regulation of RNA metabolic process;0.00618624641199508!GO:0006650;glycerophospholipid metabolic process;0.00629767838992758!GO:0019206;nucleoside kinase activity;0.0065272036348349!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00683553726514108!GO:0016272;prefoldin complex;0.00706163023549356!GO:0031902;late endosome membrane;0.00713423226670233!GO:0000209;protein polyubiquitination;0.0074159521698162!GO:0051087;chaperone binding;0.0074159521698162!GO:0008637;apoptotic mitochondrial changes;0.00785393647933456!GO:0000096;sulfur amino acid metabolic process;0.008020530332029!GO:0006497;protein amino acid lipidation;0.008020530332029!GO:0065009;regulation of a molecular function;0.0081421544815722!GO:0006220;pyrimidine nucleotide metabolic process;0.0081421544815722!GO:0050662;coenzyme binding;0.00835534525370828!GO:0040029;regulation of gene expression, epigenetic;0.00840467111074512!GO:0030027;lamellipodium;0.00880420109652!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0088908644358622!GO:0051128;regulation of cellular component organization and biogenesis;0.00899691706227534!GO:0006506;GPI anchor biosynthetic process;0.00914562823033687!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00977322259064145!GO:0008139;nuclear localization sequence binding;0.00983611425111881!GO:0006405;RNA export from nucleus;0.00985296328292183!GO:0001872;zymosan binding;0.0100994720760322!GO:0001878;response to yeast;0.0100994720760322!GO:0035258;steroid hormone receptor binding;0.0101624872351232!GO:0030663;COPI coated vesicle membrane;0.0101624872351232!GO:0030126;COPI vesicle coat;0.0101624872351232!GO:0051287;NAD binding;0.0104249212050667!GO:0005100;Rho GTPase activator activity;0.0104249212050667!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.010520345269235!GO:0032774;RNA biosynthetic process;0.0110121510236245!GO:0048037;cofactor binding;0.0110253340289977!GO:0006891;intra-Golgi vesicle-mediated transport;0.0112621785280436!GO:0006351;transcription, DNA-dependent;0.011581397830374!GO:0004004;ATP-dependent RNA helicase activity;0.0117253566182624!GO:0005657;replication fork;0.0117491962616722!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0118450737402021!GO:0015002;heme-copper terminal oxidase activity;0.0118450737402021!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0118450737402021!GO:0004129;cytochrome-c oxidase activity;0.0118450737402021!GO:0030137;COPI-coated vesicle;0.0123273501846231!GO:0042168;heme metabolic process;0.0123293698394092!GO:0005774;vacuolar membrane;0.0123441789899454!GO:0016044;membrane organization and biogenesis;0.0125223396588889!GO:0006739;NADP metabolic process;0.0128134660677915!GO:0004674;protein serine/threonine kinase activity;0.0132120372768994!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0133836192548814!GO:0007346;regulation of progression through mitotic cell cycle;0.013460933670891!GO:0007088;regulation of mitosis;0.0135629229318979!GO:0030145;manganese ion binding;0.0137030645422801!GO:0006505;GPI anchor metabolic process;0.0139156217442405!GO:0006783;heme biosynthetic process;0.0140241981230133!GO:0003678;DNA helicase activity;0.014051289555911!GO:0030503;regulation of cell redox homeostasis;0.0149849314176816!GO:0032508;DNA duplex unwinding;0.0152742639282396!GO:0032392;DNA geometric change;0.0152742639282396!GO:0030041;actin filament polymerization;0.0152742639282396!GO:0048500;signal recognition particle;0.0155021130760273!GO:0042158;lipoprotein biosynthetic process;0.0155021130760273!GO:0043065;positive regulation of apoptosis;0.0158841932785263!GO:0006509;membrane protein ectodomain proteolysis;0.0161183763177188!GO:0033619;membrane protein proteolysis;0.0161183763177188!GO:0005869;dynactin complex;0.0161183763177188!GO:0031272;regulation of pseudopodium formation;0.0164181171060676!GO:0031269;pseudopodium formation;0.0164181171060676!GO:0031344;regulation of cell projection organization and biogenesis;0.0164181171060676!GO:0031268;pseudopodium organization and biogenesis;0.0164181171060676!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0164181171060676!GO:0031274;positive regulation of pseudopodium formation;0.0164181171060676!GO:0022408;negative regulation of cell-cell adhesion;0.016831495581091!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.016831495581091!GO:0007243;protein kinase cascade;0.016831495581091!GO:0030134;ER to Golgi transport vesicle;0.0168613894162891!GO:0045449;regulation of transcription;0.01792045937865!GO:0008312;7S RNA binding;0.0179306312030274!GO:0000792;heterochromatin;0.0179306312030274!GO:0046966;thyroid hormone receptor binding;0.0179306312030274!GO:0003711;transcription elongation regulator activity;0.0181401130572873!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0184851898389266!GO:0043068;positive regulation of programmed cell death;0.0186345669012865!GO:0006338;chromatin remodeling;0.0186394336593458!GO:0004177;aminopeptidase activity;0.0186951514074597!GO:0051101;regulation of DNA binding;0.0191152753198116!GO:0005758;mitochondrial intermembrane space;0.0191653948509723!GO:0031529;ruffle organization and biogenesis;0.0194692515586105!GO:0006695;cholesterol biosynthetic process;0.0196467924773165!GO:0030658;transport vesicle membrane;0.0197722929105121!GO:0003729;mRNA binding;0.0200547752660444!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0201082185444438!GO:0043433;negative regulation of transcription factor activity;0.0202740761191223!GO:0001726;ruffle;0.0206809279512606!GO:0000123;histone acetyltransferase complex;0.0210216466750452!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0211088646697692!GO:0008286;insulin receptor signaling pathway;0.0212351255723015!GO:0031970;organelle envelope lumen;0.0216135996343838!GO:0006354;RNA elongation;0.0217058022255824!GO:0048468;cell development;0.0218312525671038!GO:0015992;proton transport;0.0219268318899767!GO:0006818;hydrogen transport;0.0219631569610641!GO:0046426;negative regulation of JAK-STAT cascade;0.0220389025888699!GO:0003702;RNA polymerase II transcription factor activity;0.0222756096932145!GO:0008092;cytoskeletal protein binding;0.0225519832017544!GO:0030508;thiol-disulfide exchange intermediate activity;0.023699962775918!GO:0000084;S phase of mitotic cell cycle;0.0244884494724759!GO:0016251;general RNA polymerase II transcription factor activity;0.0246260077752603!GO:0005862;muscle thin filament tropomyosin;0.02466359977376!GO:0030433;ER-associated protein catabolic process;0.0247204808630769!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0247204808630769!GO:0005765;lysosomal membrane;0.0255233078090199!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0255233078090199!GO:0035035;histone acetyltransferase binding;0.0256232574871533!GO:0006611;protein export from nucleus;0.0258744259194906!GO:0030384;phosphoinositide metabolic process;0.0261626425850514!GO:0008094;DNA-dependent ATPase activity;0.0262824621701114!GO:0030833;regulation of actin filament polymerization;0.026719430336767!GO:0007021;tubulin folding;0.026924553816439!GO:0001953;negative regulation of cell-matrix adhesion;0.0269751065326658!GO:0044437;vacuolar part;0.0269781643787288!GO:0006733;oxidoreduction coenzyme metabolic process;0.0273042558779079!GO:0003690;double-stranded DNA binding;0.0274726383134144!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0274726383134144!GO:0045047;protein targeting to ER;0.0274726383134144!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0275203362758035!GO:0009303;rRNA transcription;0.0281135104665905!GO:0009112;nucleobase metabolic process;0.0281329163731028!GO:0043414;biopolymer methylation;0.0283453526558169!GO:0030119;AP-type membrane coat adaptor complex;0.0284059908317928!GO:0007052;mitotic spindle organization and biogenesis;0.0285148992858956!GO:0004680;casein kinase activity;0.0285148992858956!GO:0016407;acetyltransferase activity;0.0285887460336879!GO:0009070;serine family amino acid biosynthetic process;0.0285887460336879!GO:0051716;cellular response to stimulus;0.0289269682342043!GO:0007040;lysosome organization and biogenesis;0.0290413447794576!GO:0016584;nucleosome positioning;0.0290520512257546!GO:0008154;actin polymerization and/or depolymerization;0.0290520512257546!GO:0043022;ribosome binding;0.0290885337338956!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0290885337338956!GO:0015399;primary active transmembrane transporter activity;0.0290885337338956!GO:0003756;protein disulfide isomerase activity;0.0290922048541404!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0290922048541404!GO:0003746;translation elongation factor activity;0.0292568558395643!GO:0007264;small GTPase mediated signal transduction;0.0302866547612658!GO:0051052;regulation of DNA metabolic process;0.0302866547612658!GO:0022890;inorganic cation transmembrane transporter activity;0.0303366523424656!GO:0008538;proteasome activator activity;0.0303457057749165!GO:0030125;clathrin vesicle coat;0.0304193802264171!GO:0030665;clathrin coated vesicle membrane;0.0304193802264171!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0305583873712867!GO:0009116;nucleoside metabolic process;0.0306098838300451!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0306509658765558!GO:0006564;L-serine biosynthetic process;0.0308605010693138!GO:0000910;cytokinesis;0.0308605010693138!GO:0001836;release of cytochrome c from mitochondria;0.0309028902299553!GO:0008629;induction of apoptosis by intracellular signals;0.0312050554067842!GO:0005637;nuclear inner membrane;0.0312149704178399!GO:0031418;L-ascorbic acid binding;0.031231707574652!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0317784495202607!GO:0030127;COPII vesicle coat;0.0323783040884114!GO:0012507;ER to Golgi transport vesicle membrane;0.0323783040884114!GO:0045936;negative regulation of phosphate metabolic process;0.0325386828116267!GO:0031901;early endosome membrane;0.0325573987904632!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0328180321087198!GO:0010257;NADH dehydrogenase complex assembly;0.0328180321087198!GO:0033108;mitochondrial respiratory chain complex assembly;0.0328180321087198!GO:0032259;methylation;0.0329037222174062!GO:0030518;steroid hormone receptor signaling pathway;0.0329037222174062!GO:0007017;microtubule-based process;0.0330215338758293!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0337225444053183!GO:0033559;unsaturated fatty acid metabolic process;0.0340702333015215!GO:0006636;unsaturated fatty acid biosynthetic process;0.0340702333015215!GO:0033673;negative regulation of kinase activity;0.0340921919452761!GO:0006469;negative regulation of protein kinase activity;0.0340921919452761!GO:0006268;DNA unwinding during replication;0.0342135263264686!GO:0000781;chromosome, telomeric region;0.0344129274512079!GO:0005881;cytoplasmic microtubule;0.0349790763740798!GO:0051348;negative regulation of transferase activity;0.0350423363407713!GO:0022415;viral reproductive process;0.0350894393155882!GO:0051098;regulation of binding;0.0350894393155882!GO:0042393;histone binding;0.0357518630924355!GO:0051775;response to redox state;0.0358619346555879!GO:0006980;redox signal response;0.0358619346555879!GO:0043189;H4/H2A histone acetyltransferase complex;0.0359868133808151!GO:0000922;spindle pole;0.0365101918325141!GO:0032200;telomere organization and biogenesis;0.0365101918325141!GO:0000723;telomere maintenance;0.0365101918325141!GO:0004527;exonuclease activity;0.0365321824851716!GO:0005832;chaperonin-containing T-complex;0.0367928672837528!GO:0009451;RNA modification;0.0368417735754646!GO:0000086;G2/M transition of mitotic cell cycle;0.0369069158020507!GO:0051059;NF-kappaB binding;0.0375418238262998!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0375846449808822!GO:0006519;amino acid and derivative metabolic process;0.0376061392183715!GO:0045792;negative regulation of cell size;0.0383698449737757!GO:0006417;regulation of translation;0.0383925402802382!GO:0016585;chromatin remodeling complex;0.0390665708959382!GO:0030131;clathrin adaptor complex;0.0393172884899084!GO:0016197;endosome transport;0.0401216610761956!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0403548344421964!GO:0009893;positive regulation of metabolic process;0.0404342189045347!GO:0047485;protein N-terminus binding;0.040551704941666!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0408998975851052!GO:0008287;protein serine/threonine phosphatase complex;0.0409427812077621!GO:0006950;response to stress;0.0409876444713239!GO:0003677;DNA binding;0.0411808547564657!GO:0030660;Golgi-associated vesicle membrane;0.0413634355428588!GO:0006118;electron transport;0.0417080598295763!GO:0016860;intramolecular oxidoreductase activity;0.0419058956043901!GO:0031371;ubiquitin conjugating enzyme complex;0.0419275785150369!GO:0046983;protein dimerization activity;0.0423842164869188!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0437323457736733!GO:0016311;dephosphorylation;0.0442841598527196!GO:0006007;glucose catabolic process;0.0442846116191653!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0443382780903169!GO:0000118;histone deacetylase complex;0.0444444725024365!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0447020276382363!GO:0035303;regulation of dephosphorylation;0.0448969468666198!GO:0046128;purine ribonucleoside metabolic process;0.0448969468666198!GO:0042278;purine nucleoside metabolic process;0.0448969468666198!GO:0031124;mRNA 3'-end processing;0.0450688739327889!GO:0003923;GPI-anchor transamidase activity;0.0451080375525717!GO:0016255;attachment of GPI anchor to protein;0.0451080375525717!GO:0042765;GPI-anchor transamidase complex;0.0451080375525717!GO:0006767;water-soluble vitamin metabolic process;0.0451080375525717!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0451713504032636!GO:0045039;protein import into mitochondrial inner membrane;0.0451713504032636!GO:0030496;midbody;0.0451734998979772!GO:0050178;phenylpyruvate tautomerase activity;0.0451875286765538!GO:0006310;DNA recombination;0.0452274915690606!GO:0004448;isocitrate dehydrogenase activity;0.0452274915690606!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0460150183549254!GO:0048144;fibroblast proliferation;0.0463549959947123!GO:0048145;regulation of fibroblast proliferation;0.0463549959947123!GO:0031301;integral to organelle membrane;0.0467306683029804!GO:0035267;NuA4 histone acetyltransferase complex;0.0488322187021063!GO:0045210;FasL biosynthetic process;0.0492331866820816!GO:0030308;negative regulation of cell growth;0.0493895814460283!GO:0006275;regulation of DNA replication;0.0494541874491619!GO:0016301;kinase activity;0.0497939684982366!GO:0006596;polyamine biosynthetic process;0.0497993305729078 | |||
|sample_id=11531 | |sample_id=11531 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=GTF2A1,2:1.32187276234;CEBPA,B_DDIT3:1.16946024969;EBF1:1.16145463659;bHLH_family:1.14498760795;TFAP4:1.11711191025;CRX:1.07311864325;ZIC1..3:1.06530081484;ZNF238:1.04667613541;PBX1:0.961855420039;LHX3,4:0.958957101571;HOX{A6,A7,B6,B7}:0.941586334492;NKX3-1:0.908054145098;POU2F1..3:0.881385850942;PDX1:0.859946135296;HOX{A5,B5}:0.800695831894;NR3C1:0.785838237757;GZF1:0.729331707656;TAL1_TCF{3,4,12}:0.708618389749;ZNF148:0.692617009159;GFI1:0.650511534091;NR1H4:0.635789434817;TLX1..3_NFIC{dimer}:0.575392158558;HLF:0.557322598923;NR5A1,2:0.547325134446;HES1:0.538600912554;PATZ1:0.533689209356;GFI1B:0.53325278205;RXRA_VDR{dimer}:0.503169284763;TBX4,5:0.489230920128;HAND1,2:0.467518897055;SOX17:0.456391045485;TFDP1:0.451529493594;TFCP2:0.451520124657;RXR{A,B,G}:0.445061307973;TP53:0.434271148367;TFAP2B:0.42989379397;NFY{A,B,C}:0.426072686852;TEAD1:0.421969968286;HIF1A:0.419478980752;ZNF423:0.39734662632;ESR1:0.37876348989;LEF1_TCF7_TCF7L1,2:0.369916431376;SOX5:0.369380808885;GTF2I:0.346447619377;RREB1:0.34120921946;ZNF143:0.326942730964;NANOG:0.305733961185;TFAP2{A,C}:0.283680129039;EN1,2:0.277873522327;NFE2L2:0.275870245641;HIC1:0.262029570509;PAX5:0.242702829982;YY1:0.241863316828;ZBTB6:0.232272947254;NKX2-2,8:0.231624339306;XCPE1{core}:0.227721946288;MZF1:0.201057100993;BACH2:0.200870728816;ELK1,4_GABP{A,B1}:0.192576727346;IKZF1:0.192293376146;NR6A1:0.178983803416;AHR_ARNT_ARNT2:0.14993116963;NKX2-3_NKX2-5:0.148281420264;ATF4:0.144369472111;ALX4:0.138937812618;NFE2:0.132842236402;MTF1:0.130740278798;POU1F1:0.121329366947;XBP1:0.113498537426;MYB:0.101376664508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.101132139635;NFATC1..3:0.0989755878745;HNF4A_NR2F1,2:0.0975915604651;SRF:0.0899673894252;FOS_FOS{B,L1}_JUN{B,D}:0.0871131687306;ESRRA:0.0818709346431;AR:0.0795318589116;GLI1..3:0.0770157769246;TOPORS:0.0760303714431;PAX1,9:0.0752306357222;RORA:0.0710311076659;RFX1:0.06577076771;NFIX:0.0554448803665;SP1:0.0535814829822;MYBL2:0.0429137784047;PRRX1,2:0.0336078341759;POU3F1..4:0.0303431684531;CUX2:0.0215566646576;CREB1:0.00913351901627;FOSL2:-0.00496978623898;ONECUT1,2:-0.00837390937775;NANOG{mouse}:-0.0118738319592;ADNP_IRX_SIX_ZHX:-0.017687897787;HNF1A:-0.0179295766363;TEF:-0.0184902245581;NFIL3:-0.0316220527465;KLF4:-0.0345380575777;TBP:-0.036475359914;NRF1:-0.0474210875741;POU5F1:-0.048187735629;STAT5{A,B}:-0.055539794548;SOX{8,9,10}:-0.0617020889741;FOXO1,3,4:-0.0645163702561;FOXM1:-0.0672338141904;JUN:-0.0713760311131;CDC5L:-0.0743308530193;HOX{A4,D4}:-0.0781977332909;E2F1..5:-0.0913817824802;GCM1,2:-0.0986143392205;LMO2:-0.10566820923;TLX2:-0.111063789591;GATA6:-0.113226480171;NHLH1,2:-0.115416831379;PPARG:-0.155616250673;RUNX1..3:-0.158411138892;MAZ:-0.160921837056;MED-1{core}:-0.165361289399;STAT2,4,6:-0.170002516217;FOXA2:-0.18249182218;PAX8:-0.187242936136;MTE{core}:-0.208784528205;NFKB1_REL_RELA:-0.217051875029;T:-0.217670046027;MYOD1:-0.217836140287;IRF7:-0.219582060747;PAX3,7:-0.236872261025;REST:-0.23737868775;ATF2:-0.238345199014;SNAI1..3:-0.257552165838;MYFfamily:-0.261503838892;MEF2{A,B,C,D}:-0.280206416453;PRDM1:-0.281042031097;FOXD3:-0.303394951732;EGR1..3:-0.311172829061;AIRE:-0.339181697251;EP300:-0.346054957805;NKX2-1,4:-0.351930671779;SPZ1:-0.366847977639;POU6F1:-0.378453025713;UFEwm:-0.378915048992;BREu{core}:-0.393151397724;OCT4_SOX2{dimer}:-0.397290753437;STAT1,3:-0.400901585325;ZNF384:-0.40122091033;NFE2L1:-0.404103090151;VSX1,2:-0.40509522413;FOX{F1,F2,J1}:-0.406029824479;ALX1:-0.406438369754;FOX{I1,J2}:-0.437044427413;FOXQ1:-0.44285096242;RFX2..5_RFXANK_RFXAP:-0.452441075023;TGIF1:-0.453035005889;ETS1,2:-0.475980582073;SPI1:-0.484910470325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.520817132946;NKX6-1,2:-0.532035608741;ZEB1:-0.535926131377;PAX6:-0.537850929406;HOXA9_MEIS1:-0.543522656288;NKX3-2:-0.55422951319;DMAP1_NCOR{1,2}_SMARC:-0.5661671016;MAFB:-0.58079610482;SOX2:-0.581321927681;SPIB:-0.587501222791;PAX4:-0.606867523017;CDX1,2,4:-0.610303132378;IRF1,2:-0.614941956815;ATF5_CREB3:-0.636058036001;ELF1,2,4:-0.644145106225;PITX1..3:-0.644770152939;ZFP161:-0.646329673655;ARID5B:-0.650299409219;HMX1:-0.700963840701;HBP1_HMGB_SSRP1_UBTF:-0.702503320397;DBP:-0.719174796614;GATA4:-0.720154257984;EVI1:-0.732756186031;FOXL1:-0.741868048924;BPTF:-0.752947216084;FOX{D1,D2}:-0.856429131266;PAX2:-0.861640116261;ATF6:-0.867416775125;FOXP3:-0.869447665249;SMAD1..7,9:-0.932072366762;RBPJ:-0.962300981305;HSF1,2:-1.02310511826;HMGA1,2:-1.07269498558;FOXP1:-1.17912599593;ZBTB16:-1.20277825238;SREBF1,2:-1.37368014281;FOXN1:-1.38648744334;IKZF2:-1.67171466636 | |top_motifs=GTF2A1,2:1.32187276234;CEBPA,B_DDIT3:1.16946024969;EBF1:1.16145463659;bHLH_family:1.14498760795;TFAP4:1.11711191025;CRX:1.07311864325;ZIC1..3:1.06530081484;ZNF238:1.04667613541;PBX1:0.961855420039;LHX3,4:0.958957101571;HOX{A6,A7,B6,B7}:0.941586334492;NKX3-1:0.908054145098;POU2F1..3:0.881385850942;PDX1:0.859946135296;HOX{A5,B5}:0.800695831894;NR3C1:0.785838237757;GZF1:0.729331707656;TAL1_TCF{3,4,12}:0.708618389749;ZNF148:0.692617009159;GFI1:0.650511534091;NR1H4:0.635789434817;TLX1..3_NFIC{dimer}:0.575392158558;HLF:0.557322598923;NR5A1,2:0.547325134446;HES1:0.538600912554;PATZ1:0.533689209356;GFI1B:0.53325278205;RXRA_VDR{dimer}:0.503169284763;TBX4,5:0.489230920128;HAND1,2:0.467518897055;SOX17:0.456391045485;TFDP1:0.451529493594;TFCP2:0.451520124657;RXR{A,B,G}:0.445061307973;TP53:0.434271148367;TFAP2B:0.42989379397;NFY{A,B,C}:0.426072686852;TEAD1:0.421969968286;HIF1A:0.419478980752;ZNF423:0.39734662632;ESR1:0.37876348989;LEF1_TCF7_TCF7L1,2:0.369916431376;SOX5:0.369380808885;GTF2I:0.346447619377;RREB1:0.34120921946;ZNF143:0.326942730964;NANOG:0.305733961185;TFAP2{A,C}:0.283680129039;EN1,2:0.277873522327;NFE2L2:0.275870245641;HIC1:0.262029570509;PAX5:0.242702829982;YY1:0.241863316828;ZBTB6:0.232272947254;NKX2-2,8:0.231624339306;XCPE1{core}:0.227721946288;MZF1:0.201057100993;BACH2:0.200870728816;ELK1,4_GABP{A,B1}:0.192576727346;IKZF1:0.192293376146;NR6A1:0.178983803416;AHR_ARNT_ARNT2:0.14993116963;NKX2-3_NKX2-5:0.148281420264;ATF4:0.144369472111;ALX4:0.138937812618;NFE2:0.132842236402;MTF1:0.130740278798;POU1F1:0.121329366947;XBP1:0.113498537426;MYB:0.101376664508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.101132139635;NFATC1..3:0.0989755878745;HNF4A_NR2F1,2:0.0975915604651;SRF:0.0899673894252;FOS_FOS{B,L1}_JUN{B,D}:0.0871131687306;ESRRA:0.0818709346431;AR:0.0795318589116;GLI1..3:0.0770157769246;TOPORS:0.0760303714431;PAX1,9:0.0752306357222;RORA:0.0710311076659;RFX1:0.06577076771;NFIX:0.0554448803665;SP1:0.0535814829822;MYBL2:0.0429137784047;PRRX1,2:0.0336078341759;POU3F1..4:0.0303431684531;CUX2:0.0215566646576;CREB1:0.00913351901627;FOSL2:-0.00496978623898;ONECUT1,2:-0.00837390937775;NANOG{mouse}:-0.0118738319592;ADNP_IRX_SIX_ZHX:-0.017687897787;HNF1A:-0.0179295766363;TEF:-0.0184902245581;NFIL3:-0.0316220527465;KLF4:-0.0345380575777;TBP:-0.036475359914;NRF1:-0.0474210875741;POU5F1:-0.048187735629;STAT5{A,B}:-0.055539794548;SOX{8,9,10}:-0.0617020889741;FOXO1,3,4:-0.0645163702561;FOXM1:-0.0672338141904;JUN:-0.0713760311131;CDC5L:-0.0743308530193;HOX{A4,D4}:-0.0781977332909;E2F1..5:-0.0913817824802;GCM1,2:-0.0986143392205;LMO2:-0.10566820923;TLX2:-0.111063789591;GATA6:-0.113226480171;NHLH1,2:-0.115416831379;PPARG:-0.155616250673;RUNX1..3:-0.158411138892;MAZ:-0.160921837056;MED-1{core}:-0.165361289399;STAT2,4,6:-0.170002516217;FOXA2:-0.18249182218;PAX8:-0.187242936136;MTE{core}:-0.208784528205;NFKB1_REL_RELA:-0.217051875029;T:-0.217670046027;MYOD1:-0.217836140287;IRF7:-0.219582060747;PAX3,7:-0.236872261025;REST:-0.23737868775;ATF2:-0.238345199014;SNAI1..3:-0.257552165838;MYFfamily:-0.261503838892;MEF2{A,B,C,D}:-0.280206416453;PRDM1:-0.281042031097;FOXD3:-0.303394951732;EGR1..3:-0.311172829061;AIRE:-0.339181697251;EP300:-0.346054957805;NKX2-1,4:-0.351930671779;SPZ1:-0.366847977639;POU6F1:-0.378453025713;UFEwm:-0.378915048992;BREu{core}:-0.393151397724;OCT4_SOX2{dimer}:-0.397290753437;STAT1,3:-0.400901585325;ZNF384:-0.40122091033;NFE2L1:-0.404103090151;VSX1,2:-0.40509522413;FOX{F1,F2,J1}:-0.406029824479;ALX1:-0.406438369754;FOX{I1,J2}:-0.437044427413;FOXQ1:-0.44285096242;RFX2..5_RFXANK_RFXAP:-0.452441075023;TGIF1:-0.453035005889;ETS1,2:-0.475980582073;SPI1:-0.484910470325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.520817132946;NKX6-1,2:-0.532035608741;ZEB1:-0.535926131377;PAX6:-0.537850929406;HOXA9_MEIS1:-0.543522656288;NKX3-2:-0.55422951319;DMAP1_NCOR{1,2}_SMARC:-0.5661671016;MAFB:-0.58079610482;SOX2:-0.581321927681;SPIB:-0.587501222791;PAX4:-0.606867523017;CDX1,2,4:-0.610303132378;IRF1,2:-0.614941956815;ATF5_CREB3:-0.636058036001;ELF1,2,4:-0.644145106225;PITX1..3:-0.644770152939;ZFP161:-0.646329673655;ARID5B:-0.650299409219;HMX1:-0.700963840701;HBP1_HMGB_SSRP1_UBTF:-0.702503320397;DBP:-0.719174796614;GATA4:-0.720154257984;EVI1:-0.732756186031;FOXL1:-0.741868048924;BPTF:-0.752947216084;FOX{D1,D2}:-0.856429131266;PAX2:-0.861640116261;ATF6:-0.867416775125;FOXP3:-0.869447665249;SMAD1..7,9:-0.932072366762;RBPJ:-0.962300981305;HSF1,2:-1.02310511826;HMGA1,2:-1.07269498558;FOXP1:-1.17912599593;ZBTB16:-1.20277825238;SREBF1,2:-1.37368014281;FOXN1:-1.38648744334;IKZF2:-1.67171466636 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11531-120A1;search_select_hide=table117:FF:11531-120A1 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Fibroblast - Conjunctival, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11339 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11339
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11339
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.289 |
| 10 | 10 | 0.317 |
| 100 | 100 | 0.753 |
| 101 | 101 | 0.379 |
| 102 | 102 | 0.375 |
| 103 | 103 | 0.219 |
| 104 | 104 | 0.118 |
| 105 | 105 | 0.0276 |
| 106 | 106 | 0.993 |
| 107 | 107 | 0.207 |
| 108 | 108 | 0.142 |
| 109 | 109 | 0.0461 |
| 11 | 11 | 0.18 |
| 110 | 110 | 0.0976 |
| 111 | 111 | 0.421 |
| 112 | 112 | 0.134 |
| 113 | 113 | 0.0564 |
| 114 | 114 | 0.319 |
| 115 | 115 | 0.271 |
| 116 | 116 | 0.147 |
| 117 | 117 | 0.786 |
| 118 | 118 | 0.768 |
| 119 | 119 | 0.801 |
| 12 | 12 | 0.56 |
| 120 | 120 | 0.906 |
| 121 | 121 | 0.943 |
| 122 | 122 | 0.424 |
| 123 | 123 | 0.00409 |
| 124 | 124 | 0.917 |
| 125 | 125 | 0.777 |
| 126 | 126 | 0.707 |
| 127 | 127 | 0.787 |
| 128 | 128 | 0.417 |
| 129 | 129 | 0.834 |
| 13 | 13 | 0.996 |
| 130 | 130 | 0.0504 |
| 131 | 131 | 0.389 |
| 132 | 132 | 0.572 |
| 133 | 133 | 0.297 |
| 134 | 134 | 0.171 |
| 135 | 135 | 0.605 |
| 136 | 136 | 0.885 |
| 137 | 137 | 0.0616 |
| 138 | 138 | 0.377 |
| 139 | 139 | 0.168 |
| 14 | 14 | 0.678 |
| 140 | 140 | 0.797 |
| 141 | 141 | 0.264 |
| 142 | 142 | 0.236 |
| 143 | 143 | 0.761 |
| 144 | 144 | 0.585 |
| 145 | 145 | 0.482 |
| 146 | 146 | 0.0386 |
| 147 | 147 | 0.547 |
| 148 | 148 | 0.671 |
| 149 | 149 | 0.61 |
| 15 | 15 | 0.756 |
| 150 | 150 | 0.324 |
| 151 | 151 | 0.888 |
| 152 | 152 | 0.0768 |
| 153 | 153 | 0.623 |
| 154 | 154 | 0.0159 |
| 155 | 155 | 0.215 |
| 156 | 156 | 0.2 |
| 157 | 157 | 0.356 |
| 158 | 158 | 0.0905 |
| 159 | 159 | 0.512 |
| 16 | 16 | 0.788 |
| 160 | 160 | 0.106 |
| 161 | 161 | 0.511 |
| 162 | 162 | 0.0241 |
| 163 | 163 | 0.933 |
| 164 | 164 | 0.888 |
| 165 | 165 | 0.117 |
| 166 | 166 | 0.574 |
| 167 | 167 | 0.275 |
| 168 | 168 | 0.385 |
| 169 | 169 | 0.222 |
| 17 | 17 | 0.785 |
| 18 | 18 | 0.00426 |
| 19 | 19 | 0.126 |
| 2 | 2 | 0.721 |
| 20 | 20 | 0.966 |
| 21 | 21 | 0.675 |
| 22 | 22 | 0.242 |
| 23 | 23 | 0.55 |
| 24 | 24 | 0.662 |
| 25 | 25 | 0.193 |
| 26 | 26 | 0.407 |
| 27 | 27 | 0.973 |
| 28 | 28 | 0.0518 |
| 29 | 29 | 0.333 |
| 3 | 3 | 0.497 |
| 30 | 30 | 0.0518 |
| 31 | 31 | 0.556 |
| 32 | 32 | 0.0665 |
| 33 | 33 | 0.0584 |
| 34 | 34 | 0.132 |
| 35 | 35 | 0.717 |
| 36 | 36 | 0.78 |
| 37 | 37 | 0.272 |
| 38 | 38 | 0.75 |
| 39 | 39 | 0.479 |
| 4 | 4 | 0.573 |
| 40 | 40 | 0.105 |
| 41 | 41 | 0.346 |
| 42 | 42 | 0.905 |
| 43 | 43 | 0.449 |
| 44 | 44 | 0.0502 |
| 45 | 45 | 0.169 |
| 46 | 46 | 0.757 |
| 47 | 47 | 0.594 |
| 48 | 48 | 0.371 |
| 49 | 49 | 0.538 |
| 5 | 5 | 0.326 |
| 50 | 50 | 0.179 |
| 51 | 51 | 0.823 |
| 52 | 52 | 0.979 |
| 53 | 53 | 0.163 |
| 54 | 54 | 0.621 |
| 55 | 55 | 0.315 |
| 56 | 56 | 0.282 |
| 57 | 57 | 0.815 |
| 58 | 58 | 0.0899 |
| 59 | 59 | 0.185 |
| 6 | 6 | 0.716 |
| 60 | 60 | 0.887 |
| 61 | 61 | 0.392 |
| 62 | 62 | 0.061 |
| 63 | 63 | 0.575 |
| 64 | 64 | 0.117 |
| 65 | 65 | 0.275 |
| 66 | 66 | 0.017 |
| 67 | 67 | 0.387 |
| 68 | 68 | 0.0603 |
| 69 | 69 | 0.386 |
| 7 | 7 | 0.766 |
| 70 | 70 | 0.413 |
| 71 | 71 | 0.716 |
| 72 | 72 | 0.779 |
| 73 | 73 | 0.0186 |
| 74 | 74 | 0.729 |
| 75 | 75 | 0.933 |
| 76 | 76 | 0.517 |
| 77 | 77 | 0.187 |
| 78 | 78 | 0.289 |
| 79 | 79 | 0.554 |
| 8 | 8 | 0.347 |
| 80 | 80 | 0.494 |
| 81 | 81 | 0.752 |
| 82 | 82 | 0.23 |
| 83 | 83 | 0.477 |
| 84 | 84 | 0.301 |
| 85 | 85 | 0.965 |
| 86 | 86 | 0.702 |
| 87 | 87 | 0.107 |
| 88 | 88 | 0.143 |
| 89 | 89 | 0.725 |
| 9 | 9 | 0.148 |
| 90 | 90 | 0.0249 |
| 91 | 91 | 0.624 |
| 92 | 92 | 0.909 |
| 93 | 93 | 0.934 |
| 94 | 94 | 0.397 |
| 95 | 95 | 0.357 |
| 96 | 96 | 0.936 |
| 97 | 97 | 0.338 |
| 98 | 98 | 0.881 |
| 99 | 99 | 0.00395 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11339
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002550 (fibroblast of the conjuctiva)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000061 (human fibroblast of conjuctivia sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
