FF:11555-120C7: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	Fibroblast - skin spinal muscular atrophy, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11074
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	3 year old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005869

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11074		CAGE		DRX008289		DRR009161

Accession ID Hg19

Library id		BAM		CTSS
CNhs11074		DRZ000586		DRZ001971

Accession ID Hg38

Library id		BAM		CTSS
CNhs11074		DRZ011936		DRZ013321

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.147
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.653
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0117
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.268
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.106
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.409
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.519
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.344
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.164
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.393
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.279
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.089
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0734
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.439
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.376
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.575
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.323
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.635
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.644
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11074

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.229
MA0003.1	MA0003.1	0.97
MA0004.1	MA0004.1	0.0335
MA0006.1	MA0006.1	0.493
MA0007.1	MA0007.1	0.319
MA0009.1	MA0009.1	0.0966
MA0014.1	MA0014.1	0.269
MA0017.1	MA0017.1	0.0737
MA0018.2	MA0018.2	1.04611e-5
MA0019.1	MA0019.1	0.753
MA0024.1	MA0024.1	1.17138e-4
MA0025.1	MA0025.1	0.0627
MA0027.1	MA0027.1	0.442
MA0028.1	MA0028.1	0.224
MA0029.1	MA0029.1	0.53
MA0030.1	MA0030.1	0.799
MA0031.1	MA0031.1	0.771
MA0035.2	MA0035.2	0.0024
MA0038.1	MA0038.1	0.113
MA0039.2	MA0039.2	0.00314
MA0040.1	MA0040.1	0.396
MA0041.1	MA0041.1	0.826
MA0042.1	MA0042.1	0.497
MA0043.1	MA0043.1	0.00448
MA0046.1	MA0046.1	0.593
MA0047.2	MA0047.2	0.763
MA0048.1	MA0048.1	0.061
MA0050.1	MA0050.1	0.667
MA0051.1	MA0051.1	0.354
MA0052.1	MA0052.1	0.407
MA0055.1	MA0055.1	0.995
MA0057.1	MA0057.1	0.776
MA0058.1	MA0058.1	0.0206
MA0059.1	MA0059.1	0.112
MA0060.1	MA0060.1	3.21498e-8
MA0061.1	MA0061.1	0.00441
MA0062.2	MA0062.2	1.07797e-5
MA0065.2	MA0065.2	0.0243
MA0066.1	MA0066.1	0.925
MA0067.1	MA0067.1	0.0129
MA0068.1	MA0068.1	0.078
MA0069.1	MA0069.1	0.0443
MA0070.1	MA0070.1	0.942
MA0071.1	MA0071.1	0.349
MA0072.1	MA0072.1	0.556
MA0073.1	MA0073.1	0.618
MA0074.1	MA0074.1	0.892
MA0076.1	MA0076.1	0.342
MA0077.1	MA0077.1	0.172
MA0078.1	MA0078.1	0.417
MA0079.2	MA0079.2	0.418
MA0080.2	MA0080.2	2.3324e-8
MA0081.1	MA0081.1	0.0146
MA0083.1	MA0083.1	0.0908
MA0084.1	MA0084.1	0.209
MA0087.1	MA0087.1	0.762
MA0088.1	MA0088.1	0.901
MA0090.1	MA0090.1	5.1761e-7
MA0091.1	MA0091.1	0.118
MA0092.1	MA0092.1	0.117
MA0093.1	MA0093.1	0.0543
MA0099.2	MA0099.2	0.119
MA0100.1	MA0100.1	0.405
MA0101.1	MA0101.1	3.72456e-5
MA0102.2	MA0102.2	0.942
MA0103.1	MA0103.1	7.83997e-6
MA0104.2	MA0104.2	0.00177
MA0105.1	MA0105.1	0.0128
MA0106.1	MA0106.1	0.0455
MA0107.1	MA0107.1	4.06061e-4
MA0108.2	MA0108.2	0.366
MA0111.1	MA0111.1	0.0808
MA0112.2	MA0112.2	0.506
MA0113.1	MA0113.1	0.937
MA0114.1	MA0114.1	0.0577
MA0115.1	MA0115.1	0.0708
MA0116.1	MA0116.1	0.184
MA0117.1	MA0117.1	0.746
MA0119.1	MA0119.1	0.726
MA0122.1	MA0122.1	0.554
MA0124.1	MA0124.1	0.569
MA0125.1	MA0125.1	0.622
MA0131.1	MA0131.1	0.793
MA0135.1	MA0135.1	0.331
MA0136.1	MA0136.1	8.86919e-8
MA0137.2	MA0137.2	0.871
MA0138.2	MA0138.2	0.714
MA0139.1	MA0139.1	0.32
MA0140.1	MA0140.1	0.0541
MA0141.1	MA0141.1	0.166
MA0142.1	MA0142.1	0.0632
MA0143.1	MA0143.1	0.737
MA0144.1	MA0144.1	0.944
MA0145.1	MA0145.1	0.727
MA0146.1	MA0146.1	0.654
MA0147.1	MA0147.1	0.00502
MA0148.1	MA0148.1	0.534
MA0149.1	MA0149.1	0.382
MA0150.1	MA0150.1	0.0253
MA0152.1	MA0152.1	0.00883
MA0153.1	MA0153.1	0.209
MA0154.1	MA0154.1	0.277
MA0155.1	MA0155.1	0.604
MA0156.1	MA0156.1	1.21308e-4
MA0157.1	MA0157.1	0.568
MA0159.1	MA0159.1	0.469
MA0160.1	MA0160.1	0.00504
MA0162.1	MA0162.1	0.204
MA0163.1	MA0163.1	0.517
MA0164.1	MA0164.1	0.598
MA0258.1	MA0258.1	0.233
MA0259.1	MA0259.1	0.396

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11074

Novel motif	Logo	P-value
1	1	0.293
10	10	0.629
100	100	0.707
101	101	0.236
102	102	0.00565
103	103	0.776
104	104	0.498
105	105	0.664
106	106	0.2
107	107	0.938
108	108	0.924
109	109	0.158
11	11	0.264
110	110	0.432
111	111	0.0647
112	112	0.7
113	113	0.00194
114	114	0.64
115	115	0.717
116	116	0.424
117	117	0.109
118	118	0.285
119	119	0.227
12	12	0.327
120	120	0.959
121	121	0.518
122	122	0.114
123	123	2.73148e-4
124	124	0.634
125	125	0.873
126	126	0.858
127	127	0.385
128	128	0.471
129	129	0.305
13	13	0.207
130	130	0.132
131	131	0.909
132	132	0.264
133	133	0.546
134	134	0.342
135	135	0.29
136	136	0.0152
137	137	0.442
138	138	0.521
139	139	0.393
14	14	0.357
140	140	0.431
141	141	0.104
142	142	0.661
143	143	0.453
144	144	0.185
145	145	0.572
146	146	0.936
147	147	0.161
148	148	0.0614
149	149	0.0333
15	15	0.15
150	150	0.721
151	151	0.493
152	152	0.479
153	153	0.0549
154	154	0.927
155	155	0.0197
156	156	0.79
157	157	0.308
158	158	3.81296e-4
159	159	0.299
16	16	0.31
160	160	0.841
161	161	0.167
162	162	0.781
163	163	0.452
164	164	0.888
165	165	0.522
166	166	0.0142
167	167	0.217
168	168	0.837
169	169	0.443
17	17	0.555
18	18	0.29
19	19	0.0555
2	2	0.756
20	20	0.436
21	21	0.0326
22	22	0.465
23	23	0.639
24	24	0.277
25	25	0.231
26	26	0.804
27	27	0.981
28	28	0.256
29	29	0.634
3	3	0.941
30	30	0.242
31	31	0.851
32	32	9.20699e-10
33	33	0.469
34	34	0.904
35	35	0.755
36	36	0.0645
37	37	0.433
38	38	0.286
39	39	0.367
4	4	0.286
40	40	0.0292
41	41	0.966
42	42	0.478
43	43	0.573
44	44	0.437
45	45	0.613
46	46	0.616
47	47	0.241
48	48	0.31
49	49	0.235
5	5	0.693
50	50	0.881
51	51	0.688
52	52	0.879
53	53	0.163
54	54	0.988
55	55	0.0999
56	56	0.783
57	57	0.942
58	58	0.115
59	59	0.772
6	6	0.891
60	60	0.175
61	61	0.416
62	62	0.306
63	63	0.629
64	64	0.309
65	65	0.881
66	66	0.299
67	67	0.459
68	68	0.924
69	69	0.693
7	7	0.0879
70	70	0.887
71	71	0.69
72	72	0.788
73	73	0.624
74	74	0.165
75	75	0.21
76	76	0.797
77	77	0.432
78	78	0.06
79	79	0.13
8	8	0.63
80	80	0.621
81	81	0.646
82	82	0.801
83	83	0.258
84	84	0.423
85	85	0.659
86	86	0.736
87	87	0.709
88	88	0.38
89	89	0.63
9	9	0.843
90	90	0.889
91	91	0.799
92	92	0.635
93	93	0.782
94	94	0.692
95	95	0.901
96	96	0.914
97	97	0.517
98	98	0.0581
99	99	0.00849

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11074

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005869
-|accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971
+|accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971;DRZ011936;DRZ013321
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.39!246.23!LHX9;;chr2:239756671..239756732,+!p1@TWIST2!1.87!227.73!TWIST2;;chr4:174451370..174451387,-!p1@HAND2!1.72!51.73!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.30!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.71!50.35!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.62!66.55!TCF12;;chr2:239756739..239756755,+!p2@TWIST2!1.61!66.92!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.57!35.81!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.54!33.97!EMX2;;chr10:119302232..119302265,+!p1@EMX2!1.49!29.64!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!134.39!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.42!113.31!FOXD1;;chr9:132427972..132428056,+!p1@PRRX2!1.42!32.86!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.39!26.69!PRRX1;;chr10:28034739..28034756,-!p1@MKX!1.39!23.75!MKX;;chr4:174450089..174450153,-!p2@HAND2!1.38!23.10!HAND2;;chr18:53068911..53068935,-!p4@TCF4!1.31!22.00!TCF4;;chr8:93074803..93074845,-!p1@RUNX1T1!1.30!18.78!RUNX1T1;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.67!HOXA11;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.40!IRX2;;chr7:27224795..27224840,-!p2@HOXA11!1.26!17.21!HOXA11;;chr2:19558373..19558392,-!p1@OSR1!1.25!45.29!OSR1;;chr19:13134772..13134822,+!p2@NFIX!1.25!24.39!NFIX;;chr12:54402745..54402788,+!p1@HOXC8!1.22!15.46!HOXC8;;chr2:176969097..176969109,+!p3@HOXD11!1.17!13.62!HOXD11;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.16!13.35!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.15!17.86!PRRX1;;chr10:63809013..63809041,+!p3@ARID5B!1.14!70.23!ARID5B;;chr7:27205136..27205164,-!p1@HOXA9!1.14!12.70!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.23!HOXA10;;chr3:157823517..157823562,-!p1@SHOX2!1.06!11.23!SHOX2;;chrY:2803415..2803468,+!p1@ZFY!1.06!10.49!ZFY;;chr1:197886665..197886732,+!p3@LHX9!1.06!10.49!LHX9;;chr5:72744445..72744466,-!p2@FOXD1!1.05!17.21!FOXD1;;chr4:174451350..174451363,-!p3@HAND2!1.04!10.03!HAND2;;chr8:93074848..93074871,-!p3@RUNX1T1!1.04!9.94!RUNX1T1;;chr3:141121847..141121868,+!p5@ZBTB38!1.03!15.00!ZBTB38;;chr20:55204351..55204377,+!p1@TFAP2C!1.03!12.43!TFAP2C;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.67!KDM5D;;chr1:197886421..197886432,+!p2@LHX9!1.02!9.57!LHX9;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.48!HOXD8;;chr7:27192185..27192209,-!p1@HOXA3!1.02!9.48!HOXA3;;chr2:176969124..176969155,+!p5@HOXD11!1.01!9.20!HOXD11;;chr8:99956662..99956684,+!p1@OSR2!0.98!13.26!OSR2;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.68!FOXF1;;chr7:27205106..27205134,-!p2@HOXA9!0.98!8.65!HOXA9;;chr5:321810..321877,+!p1@AHRR!0.97!27.43!AHRR;;chr2:176969228..176969260,+!p1@HOXD11!0.97!8.28!HOXD11;;chr10:63809106..63809127,+!p1@ARID5B!0.96!112.67!ARID5B;;chr6:134210243..134210257,+!p1@TCF21!0.96!8.19!TCF21;;chr2:176969179..176969226,+!p2@HOXD11!0.96!8.10!HOXD11;;chr3:147111231..147111281,+!p3@ZIC1!0.96!8.10!ZIC1;;chr7:42276787..42276815,-!p1@GLI3!0.95!21.72!GLI3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.47!GLIS1;;chr10:119302645..119302712,+!p3@EMX2!0.95!8.01!EMX2;;chr16:31076332..31076388,-!p3@ZNF668!0.94!7.64!ZNF668;;chr3:147111198..147111225,+!p4@ZIC1!0.93!7.46!ZIC1;;chr7:44143925..44143970,+!p1@AEBP1!0.92!170.20!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.79!CREB3L1;;chr10:63809077..63809089,+!p5@ARID5B!0.88!14.82!ARID5B;;chr16:54964740..54964789,+!p1@IRX5!0.88!9.67!IRX5;;chr10:119302508..119302559,+!p5@EMX2!0.88!6.63!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.88!6.54!ZEB1;;chr15:37390850..37390909,-!p3@MEIS2!0.87!13.07!MEIS2;;chr19:13135386..13135435,+!p4@NFIX!0.87!6.44!NFIX;;chr10:119302268..119302282,+!p4@EMX2!0.87!6.44!EMX2;;chr8:49833978..49833996,-!p1@SNAI2!0.86!135.22!SNAI2;;chr6:85474299..85474324,-!p1@TBX18!0.86!11.60!TBX18;;chr15:37392724..37392757,-!p1@MEIS2!0.85!29.64!MEIS2;;chr6:19837592..19837621,+!p1@ID4!0.84!38.29!ID4;;chr22:19748231..19748317,+!p1@TBX1!0.84!5.89!TBX1;;chr10:28032421..28032494,-!p2@MKX!0.84!5.89!MKX;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.31!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.83!10.86!ZFP106;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.44!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.90!NFATC4;;chr14:75894714..75894733,+!p1@JDP2!0.81!167.44!JDP2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.20!RARG;;chr7:44143978..44143989,+!p2@AEBP1!0.81!10.49!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.35!BNC1;;chr5:3595934..3595957,+!p2@IRX1!0.81!5.43!IRX1;;chr3:138665937..138665968,-!p1@FOXL2!0.81!5.43!FOXL2;;chr15:57511589..57511608,+!p4@TCF12!0.80!5.34!TCF12;;chr3:21792585..21792625,-!p2@ZNF385D!0.79!5.89!ZNF385D;;chr5:158526917..158526932,-!p1@EBF1!0.78!13.44!EBF1;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.26!TFAP2A;;chr19:13135582..13135600,+!p3@NFIX!0.78!4.97!NFIX;;chr15:37392616..37392638,-!p2@MEIS2!0.77!16.66!MEIS2;;chr5:2751785..2751808,-!p2@IRX2!0.77!4.88!IRX2;;chr19:47523058..47523114,+!p1@NPAS1!0.77!4.88!NPAS1;;chr1:158969752..158969780,+!p6@IFI16!0.76!8.65!IFI16;;chr12:54402790..54402805,+!p2@HOXC8!0.76!4.79!HOXC8;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.47!TSC22D1;;chr2:102091566..102091581,-!p1@RFX8!0.75!4.60!RFX8;;chr4:4861385..4861398,+!p1@MSX1!0.74!14.45!MSX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.74!7.92!TFAP2A;;chr12:80085061..80085119,-!p6@PAWR!0.74!7.46!PAWR;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.51!HOXA7;;chr9:2015335..2015370,+!p1@SMARCA2!0.73!59.28!SMARCA2;;chr14:62162285..62162296,+!p3@HIF1A!0.73!25.31!HIF1A;;chr11:65687362..65687436,+!p3@DRAP1!0.73!22.00!DRAP1;;chr9:2015306..2015323,+!p3@SMARCA2!0.72!12.06!SMARCA2;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.97!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.23!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.74!HIF1A;;chr3:24536253..24536328,-!p1@THRB!0.71!8.28!THRB;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.25!TBX18;;chr14:61116183..61116208,-!p1@SIX1!0.70!17.03!SIX1;;chr10:119302182..119302196,+!p6@EMX2!0.70!4.05!EMX2;;chr1:119530493..119530572,-!p1@TBX15!0.70!4.05!TBX15;;chr8:93115274..93115323,-!p4@RUNX1T1!0.70!3.96!RUNX1T1;;chr10:119301928..119301955,+!p7@EMX2!0.70!3.96!EMX2;;chr2:119604456..119604501,-!p2@EN1!0.70!3.96!EN1;;chr3:147110055..147110129,-!p1@ZIC4!0.70!3.96!ZIC4;;chr19:13106214..13106382,+!p1@NFIX!0.69!104.02!NFIX;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.68!TWIST1;;chr1:23696448..23696453,-!p5@ZNF436!0.69!4.97!ZNF436;;chr5:142780189..142780223,-!p6@NR3C1!0.69!3.87!NR3C1;;chr10:31607702..31607755,+!p3@ZEB1!0.68!4.51!ZEB1;;chr1:170632250..170632277,+!p7@PRRX1!0.68!3.77!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.35!TBX3;;chr6:1389789..1389821,+!p1@FOXF2!0.67!5.25!FOXF2;;chr5:72744562..72744573,-!p3@FOXD1!0.67!4.79!FOXD1;;chr6:100912785..100912822,-!p1@SIM1!0.67!3.68!SIM1;;chr3:141121820..141121838,+!p9@ZBTB38!0.67!3.68!ZBTB38;;chr10:28035133..28035148,-!p3@MKX!0.67!3.68!MKX;;chr12:54394309..54394336,+!p2@HOXC9!0.67!3.68!HOXC9;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.31!ZNF521;;chr21:36421535..36421610,-!p2@RUNX1!0.66!14.54!RUNX1;;chr15:37390482..37390572,-!p7@MEIS2!0.66!5.15!MEIS2;;chr1:170633058..170633084,+!p5@PRRX1!0.66!3.59!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!0.66!3.59!TBX5;;chr10:114709999..114710031,+!p1@TCF7L2!0.65!96.56!TCF7L2;;chr10:63853436..63853442,+!p4@ARID5B!0.65!21.54!ARID5B;;chr1:170632723..170632739,+!p8@PRRX1!0.65!3.50!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.63!384.77!EPAS1;;chr16:54320101..54320125,-!p4@IRX3!0.63!4.88!IRX3;;chr7:44143997..44144008,+!p3@AEBP1!0.63!4.42!AEBP1;;chr3:157824001..157824078,-!p2@SHOX2!0.63!3.31!SHOX2;;chr4:111558135..111558198,-!p2@PITX2!0.63!3.22!PITX2;;chr1:119530857..119530884,-!p4@TBX15!0.63!3.22!TBX15;;chr10:31607811..31607837,+!p6@ZEB1!0.63!3.22!ZEB1;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.19!NR3C1;;chr3:128206762..128206781,-!p2@GATA2!0.62!23.01!GATA2;;chr13:41635067..41635100,-!p5@ELF1!0.62!6.54!ELF1;;chr15:37392703..37392717,-!p8@MEIS2!0.62!4.79!MEIS2;;chr3:128212033..128212051,-!p1@GATA2!0.62!3.13!GATA2;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.13!PRRX1;;chr2:191878874..191878938,-!p1@STAT1!0.61!202.23!STAT1;;chr1:164528410..164528428,+!p1@PBX1!0.61!27.52!PBX1;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.56!ZNF281;;chr10:77161504..77161530,-!p1@ZNF503!0.60!48.42!ZNF503;;chr1:158979872..158979898,+!p3@IFI16!0.60!10.68!IFI16;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.77!MEIS2;;chr15:37392534..37392562,-!p10@MEIS2!0.60!3.31!MEIS2;;chr1:119530706..119530736,-!p3@TBX15!0.59!2.85!TBX15;;chr12:54410948..54410992,+!p3@HOXC5!0.59!2.85!HOXC5;;chr2:172950227..172950249,+!p2@DLX1!0.59!2.85!DLX1;;chr3:138665969..138665993,-!p2@FOXL2!0.59!2.85!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.59!2.85!ZBTB38;;chr5:142780237..142780261,-!p7@NR3C1!0.59!2.85!NR3C1;;chr12:48298785..48298828,-!p1@VDR!0.58!17.86!VDR;;chr8:116681409..116681431,-!p2@TRPS1!0.58!8.84!TRPS1;;chr12:48298765..48298783,-!p2@VDR!0.58!6.72!VDR;;chr2:191878812..191878823,-!p2@STAT1!0.58!3.77!STAT1;;chr3:147111505..147111529,+!p6@ZIC1!0.58!2.76!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!0.58!2.76!ZIC1;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.76!HOXC8;;chr2:145275162..145275202,-!p2@ZEB2!0.57!19.33!ZEB2;;chr7:42276822..42276895,-!p2@GLI3!0.57!9.67!GLI3;;chr5:139487608..139487663,+!p3@PURA!0.57!6.72!PURA;;chr10:63661437..63661465,+!p2@ARID5B!0.56!62.87!ARID5B;;chr3:178789522..178789564,-!p2@ZMAT3!0.56!24.03!ZMAT3;;chr13:45151403..45151433,-!p5@TSC22D1!0.56!6.63!TSC22D1;;chr2:28618532..28618610,+!p4@FOSL2!0.56!5.06!FOSL2;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.68!TEAD1;;chr8:72756213..72756243,-!p5@MSC!0.56!3.59!MSC;;chr11:46299443..46299459,+!p4@CREB3L1!0.56!2.67!CREB3L1;;chr12:114845810..114845824,-!p1@TBX5!0.56!2.67!TBX5;;chr12:57914286..57914304,-!p1@DDIT3!0.55!117.27!DDIT3;;chr21:36260980..36261011,-!p1@RUNX1!0.55!93.15!RUNX1;;chr19:13136130..13136165,+!p6@NFIX!0.55!3.59!NFIX;;chr5:3595977..3595999,+!p1@IRX1!0.55!2.58!IRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.55!2.58!RUNX1T1;;chr3:24536332..24536358,-!p2@THRB!0.55!2.58!THRB;;chr2:71127699..71127744,+!p1@VAX2!0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11555-120C7
 |is_a=EFO:0002091;;FF:0000251
@@ Line 46: / Line 52: @@
 |library_id=CNhs11074
 |library_id_phase_based=2:CNhs11074
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11555
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11555
 |name=Fibroblast - skin spinal muscular atrophy, donor1
 |namespace=FANTOM5
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11555-120C7;search_select_hide=table117:FF:11555-120C7
 }}

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FF:11555-120C7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:08, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0